CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015219	Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 plasmid pSGG1, complete sequence	0 crisprs	NA	0	0	0	0
NC_015215	Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069, complete genome	3 crisprs	DEDDh,cas3,csa3,csm6,WYL,csn2,cas2,cas1,cas9,DinG	0	17	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015215_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015215_1

1515726-1516570

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR

12 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NC_015215_1

>merge|NC_015215|1|1515726-1516570|CRISPRCasFinder,CRT,PILER-CR
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAACTGCTTCTTAGCGGTGTTATTTTAATGGCAGGTTTTGGAACCATTCGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTGACAAGGAAAGTGGCGTATCCCAATCTGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGGTGGTGGAACAGTTGGAGTAGTTCCTGCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGATTTAGCAGGCTATTCAGCTATTGAAAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGAACCAAAAACGTTTTCAACCGTTGGCTCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGTTGGCTTTGATTGGTCTGATAACGGTATTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGTGAATTGTTCAATCATTGATGTTATATAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACTGCTTTACGTTGAAGAGCTTCTTCCATAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTATTAGATGTTTGTGATGTCTTTGATGAATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAATCTTTATGGTAGAACAGTTCCAACGTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACGGGAATTGGCTAATTATTAAAAATATAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCCTATGATATGCCCATTGTTATCCATTTTGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACC

>NC_015215|1|1|1515726-1516570|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGCTTCTTAGCGGTGTTATTTTAATGGCAGGTTTTGGAACCATTCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTGACAAGGAAAGTGGCGTATCCCAATCTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGGTGGTGGAACAGTTGGAGTAGTTCCTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGATTTAGCAGGCTATTCAGCTATTGAAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAACCAAAAACGTTTTCAACCGTTGGCTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTTGGCTTTGATTGGTCTGATAACGGTATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTGAATTGTTCAATCATTGATGTTATATAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTGCTTTACGTTGAAGAGCTTCTTCCATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTAGATGTTTGTGATGTCTTTGATGAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAATCTTTATGGTAGAACAGTTCCAACGTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGGGAATTGGCTAATTATTAAAAATATAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CCTATGATATGCCCATTGTTATCCATTTTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACC

>NC_015215|1|1|1515726-1516569|CRT
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGCTTCTTAGCGGTGTTATTTTAATGGCAGGTTTTGGAACCATTCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTGACAAGGAAAGTGGCGTATCCCAATCTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGGTGGTGGAACAGTTGGAGTAGTTCCTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGATTTAGCAGGCTATTCAGCTATTGAAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAACCAAAAACGTTTTCAACCGTTGGCTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTTGGCTTTGATTGGTCTGATAACGGTATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTGAATTGTTCAATCATTGATGTTATATAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTGCTTTACGTTGAAGAGCTTCTTCCATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTAGATGTTTGTGATGTCTTTGATGAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAATCTTTATGGTAGAACAGTTCCAACGTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGGGAATTGGCTAATTATTAAAAATATAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CCTATGATATGCCCATTGTTATCCATTTTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NC_015215|1|1|1515808-1516569|PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTGACAAGGAAAGTGGCGTATCCCAATCTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGGTGGTGGAACAGTTGGAGTAGTTCCTGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGATTTAGCAGGCTATTCAGCTATTGAAAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAACCAAAAACGTTTTCAACCGTTGGCTC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTTGGCTTTGATTGGTCTGATAACGGTATT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GTGAATTGTTCAATCATTGATGTTATATAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTGCTTTACGTTGAAGAGCTTCTTCCATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTAGATGTTTGTGATGTCTTTGATGAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAATCTTTATGGTAGAACAGTTCCAACGTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGGGAATTGGCTAATTATTAAAAATATAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CCTATGATATGCCCATTGTTATCCATTTTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015215.1\|WP_009854538.1\|1519697_1520042_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_015215.1\|WP_172855736.1\|1519045_1519711_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NC_015215.1\|WP_013643274.1\|1505475_1505994_-\|hypothetical-protein	unknown	unknown	unknown
NC_015215.1\|WP_009854522.1\|1506289_1506763_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_015215.1\|WP_013643275.1\|1512216_1513500_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NC_015215.1\|WP_009854535.1\|1518369_1518750_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_015215.1\|WP_009854539.1\|1520038_1520905_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_015215.1\|WP_009854536.1\|1518761_1518950_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_015215.1\|WP_009854528.1\|1510926_1511751_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
NC_015215.1\|WP_013643273.1\|1504984_1505446_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_015215.1\|WP_009854527.1\|1509397_1510840_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NC_015215.1\|WP_013643276.1\|1525746_1526442_-\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NC_015215.1\|WP_009854540.1\|1520904_1525017_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_015215.1\|WP_009854523.1\|1507061_1508423_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_015215.1\|WP_009854526.1\|1509005_1509239_-\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225215
NC_015215.1\|WP_009854529.1\|1511747_1512224_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NC_015215.1\|WP_012962176.1\|1526416_1527190_-\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NC_015215.1\|WP_009854531.1\|1516653_1517070_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NC_015215.1\|WP_003065532.1\|1513721_1515557_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_015215.1\|WP_009854541.1\|1525574_1525745_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015215.1\|WP_009854538.1\|1519697_1520042_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.71482e-48
NC_015215.1\|WP_172855736.1\|1519045_1519711_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.58428e-114
NC_015215.1\|WP_009854522.1\|1506289_1506763_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.09298e-15
NC_015215.1\|WP_013643275.1\|1512216_1513500_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NC_015215.1\|WP_009854535.1\|1518369_1518750_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.96722e-17
NC_015215.1\|WP_009854539.1\|1520038_1520905_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.46732e-130
NC_015215.1\|WP_009854536.1\|1518761_1518950_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	8.16808e-15
NC_015215.1\|WP_009854528.1\|1510926_1511751_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.56293e-150
NC_015215.1\|WP_013643273.1\|1504984_1505446_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.4261e-10
NC_015215.1\|WP_009854527.1\|1509397_1510840_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	5.63463e-55
NC_015215.1\|WP_013643276.1\|1525746_1526442_-\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	2.10334e-66
NC_015215.1\|WP_009854540.1\|1520904_1525017_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NC_015215.1\|WP_009854523.1\|1507061_1508423_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	3.03591e-178
NC_015215.1\|WP_009854526.1\|1509005_1509239_-\|AbrB-family-transcriptional-regulator	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	7.60191e-05
NC_015215.1\|WP_009854529.1\|1511747_1512224_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	2.50906e-59
NC_015215.1\|WP_012962176.1\|1526416_1527190_-\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.09682e-129
NC_015215.1\|WP_009854531.1\|1516653_1517070_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	9.46762e-80
NC_015215.1\|WP_003065532.1\|1513721_1515557_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0

>NC_015215.1|WP_003065532.1|1513721_1515557_-|elongation-factor-4
MDIQELKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFSYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRQEIEDVIGLDASEAVLASAKAGIGIEEILEQIVEYVPAPAGDVEAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQLMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTVTLAENPAEAPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTKVASIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDENRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSKLVKMDILLNGDKVDALSFIVHNEFAYERGKLIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDNSKK
>NC_015215.1|WP_013643275.1|1512216_1513500_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKLLTNVSQLKGTLRVPGDKSISHRSIMFGSLAKGTTTVHDILRGEDVLSTMQVFRDLGVDIQDDGNIVTITGVGFDGLKAPKNKLDMGNSGTSIRLISGVLAGQDFTVEMFGDDSLSKRPMDRVTIPLRQMGVEVSGQTDRDLPPLTMRGSKALKPIHYQLPVASAQVKSALIFAALQADGESVIIEKEKTRNHTEDMIVQFGGAIDVNGKEIRIKGGQEFTGQDVVVPGDISSAAFWLVAGLIVPNAKVTLENVGINETRTGIIDVIKEMGGKMTISNVDEIAKSATITVETSELHGVEIGGEIIPRLIDELPIIALLATQANGTTIIRDAEELKVKETDRIQVVADALNAMGTDITPTDDGMIIKGKTPLHGAKVNTFGDHRIGMMTAIAALLVSDGDVELGRAEAINTSYPSFFNDLEVLSRG
>NC_015215.1|WP_009854529.1|1511747_1512224_-|shikimate-kinase
MARIIIGFMGSGKSTISSLLDENYIDMDALITERIGMSIADFFAKEGEAKFREIESQVLAELADSDQVISTGGGVVINPINREILAKNPETIYLKSDFETLYDRIEHDTENVRPLFVNNSKEAFKEIFDGRQEMYETAANRIIDVAGKTPEEIVEEIG
>NC_015215.1|WP_009854528.1|1510926_1511751_-|prephenate-dehydratase
MKVGYLGPSGSFTHNVAVKAFPEANRMPFANITEVIKSYEEGFVDYAIIPVENSIEGSVHETLDYLFHQAEIEAIAEIIQPIKQQLLATTQTKKIEKIFSHPQAIAQGKKYIKAHYPAAKIEMTASTAYAARFIAEHPEENFAAIAPVAAAKEYGLEIIAQDIQEMDENYTRFWVLGHQKWSFDLAKLNQKVSLALTLPDNLPGALYKALSVFAWRGIDLTKIESRPLKTALGEYFFIVDVENKNDTLVSFALEELSVLGIGYKILGRYDVYKL
>NC_015215.1|WP_009854527.1|1509397_1510840_-|LCP-family-protein
MARSNLSRHEELRYEYLLSNLEYLSAREKQEFDYLYNKKQASEVSEPPRSQPSSAYNDNYYGDYYDDAYDNQVDYYDDDNWTSQGLPKYPEEKKQSKRSFRRTSEQQAEILPTYQDNYENYNEAFYQEPEPVTPKKAKKPKKKRRKIRIKRLLKLLGFLVILVMAGMIYMFFKGVNDVSSGETNYTAAVTETFNGEDSDDGTNILILGSDQRITQGSSDARTDTIMVMNIGNSDGKIKLVSFMRDTLVNIDGVSYNAYSNDQKLNVAFNIGEQDDNQGAELMRQTLKDNFDINIKYYVMVDFETFAEAIDTLFPNGVEIDAKFGTVDGQAVSSVEVPDDLNMQADGTVPNQTIEVGTQKMDGRTLLNYARFRKDDDGDYGRTQRQQQVISAIINQIKDPSKLFTGSAAIGKIYALTSTNISYPFLLKEGLSVITSGQEGIEQTTIPAEGDWTDDYDMYGGLGIAIDFDKYQEELKELGLR
>NC_015215.1|WP_009854526.1|1509005_1509239_-|AbrB-family-transcriptional-regulator
MIVKSRKQGNSLMITIPSYLNVPEGTEYEVKASANGELIFSPVEKSKREFATNEDISAITDDIFKDYDDVFKELVDK
>NC_015215.1|WP_009854523.1|1507061_1508423_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MLSKNAIVDAEITDLSHEGAGVAKVDGFVFFVENALPGEKIKMRVLKVKKNIGFGKVEEYVTISEHRNQDLNVDYLRTGIADFGHLAYAEQLKFKRKQVMDNLYKTAGISDIEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSGKMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKNTNVIFGNEFKTLYGKDTIIDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPASMARDIKLYQELGYKLIKVQPVDLFPNTHHVETVVLMSRVER
>NC_015215.1|WP_009854522.1|1506289_1506763_-|GNAT-family-N-acetyltransferase
MKIETYKGKYDDEIISLILDIQNNEAKINLSLQEQPDLIDISRFYQQDGGEFWIALSDEKVVGTIGLMLKENQCAILKKFFVHKDFRSKKVGLSLYNALLKYAKEIDIQHIILDTPSVATASHRFYERAGFHIISMEELPIPYTYPDRDSILYMLDF
>NC_015215.1|WP_013643274.1|1505475_1505994_-|hypothetical-protein
MGLLDFFKKKKRLTSSDVLDDESYIKEIRHCSQEAWHQYDVLLAARGYGWKGMVDWASYMNKADLMNISTITYSSLPGSKEIECIESFRQNENDFFKMQELKDEQSSLAVGGESKTLKVPIKIVWFNQTRTLRFFTLFLDDEKLMERYIETMIRRTFLTADAMKLAKSGRID
>NC_015215.1|WP_013643273.1|1504984_1505446_-|GNAT-family-N-acetyltransferase
MKLKEIIDDTEKQDITHFILGALPEWFGISEARKNYIKESAKCPFIAAYDKKHPLGFVYLKETGRDTVELFVMGVLKEYHRQGVGKALVLKAKEIATKKGYTFLQVKTVQMGKYDSYDSTNHFYLSLGFKEFEVFPTLWDDCNPCQIYVMALE
>NC_015215.1|WP_009854531.1|1516653_1517070_-|nucleoside-diphosphate-kinase
MEKTFFMIKPDGVRRGLVGEVLHRIERRGFTIEKLEMRMATPELLEKHYADLVDRPFFPLIVDFMTSGPVITGVMSGNEVITSWRTMMGATNPKEALPGTIRGDYAQAPDEGGATFNIVHGSDSPESVEREIALWFGE
>NC_015215.1|WP_009854535.1|1518369_1518750_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLKSYPAIFHKEDDGSFWVEFPGFGGGTEGDDVEEAMKNAREMLESSLAAYLDEGLELPKVVNMSELSVEDGFITLIQADPSPYLKSTKAIRKNVTVPEWLVRLADRENVNYSEVLTQALEKKLQL
>NC_015215.1|WP_009854536.1|1518761_1518950_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MPLTGRELAKLAVLKGWKEVRVKGSHHQFKKDGVPYILTIPIHGNKVLGVGLEKKILKDIGL
>NC_015215.1|WP_172855736.1|1519045_1519711_-|type-II-A-CRISPR-associated-protein-Csn2
MMKINFPILDEPIEILDATILTVEDVTVFSNLVRQFYSYSEECDLKLFDEKLRSLKVSELLLVTDIFGFDVNSQSMLKLIHADLESQLNDKSEVKSMIEQLANTITELLSYECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEILQIYNYLSKKKLLIFVNSGAYLTKNEMKKLIEYIKLSNQKVIFLEPRRLYDFPQYVLDSDYFLIAENMN
>NC_015215.1|WP_009854538.1|1519697_1520042_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNSANKAMIDRLQANNPKKGSITLLTVTEKQFARMIYLNGERNTSVANSDRRLVFLGEDYSDEN
>NC_015215.1|WP_009854539.1|1520038_1520905_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVIVNEHSKLSYKNNHLIFKDAYHTEMIHLEEIDILLLETTNIVLTTMLIERLVERNILIIFCDEKRLPTAMLTPYYGRHDSSLQLTNQIAWDDDVKCDVWTTIIAQKILNQSMYLGECSFFEKSQSIMELYHGLEPFDPSNREGHSARIYFNTLFGNDFSREQDNDINAGLDYGYTLLLSMFARELVVCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIVYENRNASFVKIKRELFTMFDETYSYNNKEMFLNNIVSDYTKKVVKALNHGGKGVPEFRI
>NC_015215.1|WP_009854540.1|1520904_1525017_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKKNYSIGLDIGTNSVGWAVITDDYKVPAKKMKVLGNTDKKYIKKNLLGALLFDSGETAEATRLKRTARRRYTRRKNRLRYLQEIFAEEMTKVDESFFYRLDESFLTTDEKDFERHPIFGNKAEEDAYHQKFPTIYHLRNYLADSSEKADLRLVYLALAHMIKYRGHFLIEGKLNAENTDVQKLFTDFVGVYDRTFDDSHLSEITVDVASTLTEKISKSRRLENLIKYYPTEKKNTLFGNLIALALGLQPNFKMNFKLSEDAKLQFSKDTYEEDLEELLGKIGDDYADLFTSAKNLYDAILLSGILTVDDNSTKAPLSASMIKRYVEHHEDLEKLKEFIKANKSELYHDIFKDKNKNGYAGYIENGVKQDEFYKYLKNTLSKIDGSDYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMHAILRRQGDYYPFLKEKQDRIEKILTFRIPYYVGPLVRKDSRFAWAEYRSDEKITPWNFDKVIDKEKSAEKFITRMTLNDLYLPEEKVLPKHSHVYETYAVYNELTKIKYVNEQGKESFFDSNMKQEIFDHVFKENRKVTKEKLLNYLNKEFPEYRIKDLIGLDKENKSFNASLGTYHDLKKILDKAFLDDKVNEEVIEDIIKTLTLFEDKDMIHERLQKYSDIFTANQLKKLERRHYTGWGRLSYKLINGIRNKENNKTILDYLIDDGSANRNFMQLINDDTLPFKQIIQKSQVVGDVDDIEAVVHDLPGSPAIKKGILQSVKIVDELVKVMGDNPDNIVIEMARENQTTNRGRSQSQQRLKKLQSSLKELGSNILNEEKPSYIEDKVENSHLQNDQLFLYYIQNGKDMYTGDELDIDHLSDYDIDHIIPQAFIKDDSIDNRVLTSSAKNRGKSDDVPSLDIVRARKAEWVRLYKSGLISKRKFDNLTKAERGGLTEADKAGFIKRQLVETRQITKHVAQILDARFNTEHDENDKVIRDVKVITLKSNLVSQFRKDFEFYKVREINDYHHAHDAYLNAVVGTALLKKYPKLASEFVYGEYKKYDIRKFITNSSDKATAKYFFYSNLMNFFKTKVKYADGTVFERPIIETNADGEIAWNKQIDFEKVRKVLSYPQVNIVKKVETQTGGFSKESILPKGDSDKLIPRKTKKVYWDTKKYGGFDSPTVAYSVFVVADVEKGKAKKLKTVKELVGISIMERSFFEENPVEFLENKGYHNIREDKLIKLPKYSLFEFEGGRRRLLASASELQKGNEMVLPGYLVELLYHAHRADNFNSTEYLNYVSEHKKEFEKVLSCVEDFANLYVDVEKNLSKIRAVADSMDNFSIEEISNSFINLLTLTALGAPADFNFLGEKIPRKRYTSTKECLTATLIHQSITGLYETRIDLSKLGEE
>NC_015215.1|WP_009854541.1|1525574_1525745_-|hypothetical-protein
MSLAWYYWLLFAVSWLFAILLWIKSTTIPQKWLKALFVICGLIAFALPFFWGWLVS
>NC_015215.1|WP_013643276.1|1525746_1526442_-|TIGR01906-family-membrane-protein
MNGILMKNKLWTFSTWLWLLALAVLVAIYGAWLIYPLEVDWLKLTLQVTITKDDLLKNFNILMTYLTNPLSHTLSMPDFPSSTDGLKHFRDVKHLFHLAQAVFVVMLYPSWRFWKNSRAEKSLFLHQRAFTLAAVLPVLIAVAGLLIGFDQFFTLFHEVLFPGDSTWLFNPATDPIIWVLPEEFFLHCFIIFFVTYEVIMIGLVVIARRQLAKRLQDQQKHPKTIKVERND
>NC_015215.1|WP_012962176.1|1526416_1527190_-|TIGR01457-family-HAD-type-hydrolase
MTYKGYLIDLDGTIYKGKNRIPAGERFIQRLQERNIPYVLVTNNTTRTPEKVQEMLATQFNVHTPLETIYTATMATIDYMNDMNRGKTVYVIGETGLKTAIAEAGYVEDTENPAYVVVGLDTQLTYEMLAVATLAIQKGAVFIGTNPDLNIPTERGLMPGAGSINKLLETATRVQPVFIGKPNAIIMNKALDVLGVKREEAIMVGDNYLTDIMAGIQNDIATLLVTTGFTKPEEVPTLPVKPDHVLASLDEWNFDEK

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Crispr_ID: NC_015215_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015215_2

1517213-1518237

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT

15 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NC_015215_2

>merge|NC_015215|2|1517213-1518237|PILER-CR,CRISPRCasFinder,CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACAAAGTCGTTGACTACGACGATAAAATTAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACATATTACGATTATTTGTCTAACTTTAATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTACTTCTCAGCTGTTATTGAAGAAGATACGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGAGTCCGTTGTTGCAGGTCTGAATACTTCGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCAAGTTCCGACACAGTCGAAGATGAACCTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTATTCGAGAGTGTCAACAATTTTGTCTATAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAATATAAAGATTTACCATTTTAAAAGGAGGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGAACCATTGTTCCTTGTGTAGTTTGTCCTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTAATATTCGAATACTCCGATATCACCATCTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGCATTGAATTACCATAAGGAAAAGCAGCGCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTATAGATGTCTTGTGTAATTTGGTACACAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAACAACGGAAGTAACTTTAATCATTGATGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGTTCACCATACGCAATGACTTTGATGTAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGTTCGTTGTATAATGTGTATGTTAGTCTGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGATAAGCGACATGGTATTGACTTTTCATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NC_015215|2|2|1517213-1518237|PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAAAGTCGTTGACTACGACGATAAAATTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACATATTACGATTATTTGTCTAACTTTAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTACTTCTCAGCTGTTATTGAAGAAGATAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAGTCCGTTGTTGCAGGTCTGAATACTTCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAAGTTCCGACACAGTCGAAGATGAACCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTCGAGAGTGTCAACAATTTTGTCTATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATATAAAGATTTACCATTTTAAAAGGAGG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAACCATTGTTCCTTGTGTAGTTTGTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAATATTCGAATACTCCGATATCACCATCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GCATTGAATTACCATAAGGAAAAGCAGCGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTATAGATGTCTTGTGTAATTTGGTACACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACAACGGAAGTAACTTTAATCATTGATGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTTCACCATACGCAATGACTTTGATGTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTTCGTTGTATAATGTGTATGTTAGTCTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATAAGCGACATGGTATTGACTTTTCATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NC_015215|2|2|1517213-1518237|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAAAGTCGTTGACTACGACGATAAAATTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACATATTACGATTATTTGTCTAACTTTAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTACTTCTCAGCTGTTATTGAAGAAGATAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAGTCCGTTGTTGCAGGTCTGAATACTTCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAAGTTCCGACACAGTCGAAGATGAACCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTCGAGAGTGTCAACAATTTTGTCTATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATATAAAGATTTACCATTTTAAAAGGAGG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAACCATTGTTCCTTGTGTAGTTTGTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAATATTCGAATACTCCGATATCACCATCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GCATTGAATTACCATAAGGAAAAGCAGCGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTATAGATGTCTTGTGTAATTTGGTACACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACAACGGAAGTAACTTTAATCATTGATGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTTCACCATACGCAATGACTTTGATGTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTTCGTTGTATAATGTGTATGTTAGTCTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATAAGCGACATGGTATTGACTTTTCATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NC_015215|2|2|1517213-1518237|CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACAAAGTCGTTGACTACGACGATAAAATTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACATATTACGATTATTTGTCTAACTTTAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTACTTCTCAGCTGTTATTGAAGAAGATAC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAGTCCGTTGTTGCAGGTCTGAATACTTCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCAAGTTCCGACACAGTCGAAGATGAACCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTCGAGAGTGTCAACAATTTTGTCTATA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATATAAAGATTTACCATTTTAAAAGGAGG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAACCATTGTTCCTTGTGTAGTTTGTCCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TAATATTCGAATACTCCGATATCACCATCT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GCATTGAATTACCATAAGGAAAAGCAGCGC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTATAGATGTCTTGTGTAATTTGGTACACA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AACAACGGAAGTAACTTTAATCATTGATGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTTCACCATACGCAATGACTTTGATGTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGTTCGTTGTATAATGTGTATGTTAGTCTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATAAGCGACATGGTATTGACTTTTCATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015215.1\|WP_009854538.1\|1519697_1520042_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_015215.1\|WP_172855736.1\|1519045_1519711_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NC_015215.1\|WP_013643274.1\|1505475_1505994_-\|hypothetical-protein	unknown	unknown	unknown
NC_015215.1\|WP_009854522.1\|1506289_1506763_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_015215.1\|WP_013643275.1\|1512216_1513500_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NC_015215.1\|WP_009854535.1\|1518369_1518750_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_015215.1\|WP_009854539.1\|1520038_1520905_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_015215.1\|WP_009854536.1\|1518761_1518950_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_015215.1\|WP_009854528.1\|1510926_1511751_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
NC_015215.1\|WP_012962176.1\|1526416_1527190_-\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NC_015215.1\|WP_009854527.1\|1509397_1510840_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NC_015215.1\|WP_013643276.1\|1525746_1526442_-\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NC_015215.1\|WP_009854540.1\|1520904_1525017_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NC_015215.1\|WP_009854523.1\|1507061_1508423_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_015215.1\|WP_009854526.1\|1509005_1509239_-\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225215
NC_015215.1\|WP_009854529.1\|1511747_1512224_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NC_015215.1\|WP_012962177.1\|1527249_1527873_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240029
NC_015215.1\|WP_009854531.1\|1516653_1517070_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NC_015215.1\|WP_003065532.1\|1513721_1515557_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_015215.1\|WP_009854541.1\|1525574_1525745_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015215.1\|WP_009854538.1\|1519697_1520042_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.71482e-48
NC_015215.1\|WP_172855736.1\|1519045_1519711_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.58428e-114
NC_015215.1\|WP_009854522.1\|1506289_1506763_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.09298e-15
NC_015215.1\|WP_013643275.1\|1512216_1513500_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NC_015215.1\|WP_009854535.1\|1518369_1518750_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.96722e-17
NC_015215.1\|WP_009854539.1\|1520038_1520905_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.46732e-130
NC_015215.1\|WP_009854536.1\|1518761_1518950_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	8.16808e-15
NC_015215.1\|WP_009854528.1\|1510926_1511751_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.56293e-150
NC_015215.1\|WP_012962176.1\|1526416_1527190_-\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.09682e-129
NC_015215.1\|WP_009854527.1\|1509397_1510840_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	5.63463e-55
NC_015215.1\|WP_013643276.1\|1525746_1526442_-\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	2.10334e-66
NC_015215.1\|WP_009854540.1\|1520904_1525017_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NC_015215.1\|WP_009854523.1\|1507061_1508423_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	3.03591e-178
NC_015215.1\|WP_009854526.1\|1509005_1509239_-\|AbrB-family-transcriptional-regulator	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	7.60191e-05
NC_015215.1\|WP_009854529.1\|1511747_1512224_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	2.50906e-59
NC_015215.1\|WP_009854531.1\|1516653_1517070_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	9.46762e-80
NC_015215.1\|WP_003065532.1\|1513721_1515557_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_015215.1\|WP_012962177.1\|1527249_1527873_-\|NUDIX-hydrolase	gnl\|CDD\|240029	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.56275e-57

>NC_015215.1|WP_009854531.1|1516653_1517070_-|nucleoside-diphosphate-kinase
MEKTFFMIKPDGVRRGLVGEVLHRIERRGFTIEKLEMRMATPELLEKHYADLVDRPFFPLIVDFMTSGPVITGVMSGNEVITSWRTMMGATNPKEALPGTIRGDYAQAPDEGGATFNIVHGSDSPESVEREIALWFGE
>NC_015215.1|WP_003065532.1|1513721_1515557_-|elongation-factor-4
MDIQELKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFSYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRQEIEDVIGLDASEAVLASAKAGIGIEEILEQIVEYVPAPAGDVEAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQLMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTVTLAENPAEAPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTKVASIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDENRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSKLVKMDILLNGDKVDALSFIVHNEFAYERGKLIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDNSKK
>NC_015215.1|WP_013643275.1|1512216_1513500_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKLLTNVSQLKGTLRVPGDKSISHRSIMFGSLAKGTTTVHDILRGEDVLSTMQVFRDLGVDIQDDGNIVTITGVGFDGLKAPKNKLDMGNSGTSIRLISGVLAGQDFTVEMFGDDSLSKRPMDRVTIPLRQMGVEVSGQTDRDLPPLTMRGSKALKPIHYQLPVASAQVKSALIFAALQADGESVIIEKEKTRNHTEDMIVQFGGAIDVNGKEIRIKGGQEFTGQDVVVPGDISSAAFWLVAGLIVPNAKVTLENVGINETRTGIIDVIKEMGGKMTISNVDEIAKSATITVETSELHGVEIGGEIIPRLIDELPIIALLATQANGTTIIRDAEELKVKETDRIQVVADALNAMGTDITPTDDGMIIKGKTPLHGAKVNTFGDHRIGMMTAIAALLVSDGDVELGRAEAINTSYPSFFNDLEVLSRG
>NC_015215.1|WP_009854529.1|1511747_1512224_-|shikimate-kinase
MARIIIGFMGSGKSTISSLLDENYIDMDALITERIGMSIADFFAKEGEAKFREIESQVLAELADSDQVISTGGGVVINPINREILAKNPETIYLKSDFETLYDRIEHDTENVRPLFVNNSKEAFKEIFDGRQEMYETAANRIIDVAGKTPEEIVEEIG
>NC_015215.1|WP_009854528.1|1510926_1511751_-|prephenate-dehydratase
MKVGYLGPSGSFTHNVAVKAFPEANRMPFANITEVIKSYEEGFVDYAIIPVENSIEGSVHETLDYLFHQAEIEAIAEIIQPIKQQLLATTQTKKIEKIFSHPQAIAQGKKYIKAHYPAAKIEMTASTAYAARFIAEHPEENFAAIAPVAAAKEYGLEIIAQDIQEMDENYTRFWVLGHQKWSFDLAKLNQKVSLALTLPDNLPGALYKALSVFAWRGIDLTKIESRPLKTALGEYFFIVDVENKNDTLVSFALEELSVLGIGYKILGRYDVYKL
>NC_015215.1|WP_009854527.1|1509397_1510840_-|LCP-family-protein
MARSNLSRHEELRYEYLLSNLEYLSAREKQEFDYLYNKKQASEVSEPPRSQPSSAYNDNYYGDYYDDAYDNQVDYYDDDNWTSQGLPKYPEEKKQSKRSFRRTSEQQAEILPTYQDNYENYNEAFYQEPEPVTPKKAKKPKKKRRKIRIKRLLKLLGFLVILVMAGMIYMFFKGVNDVSSGETNYTAAVTETFNGEDSDDGTNILILGSDQRITQGSSDARTDTIMVMNIGNSDGKIKLVSFMRDTLVNIDGVSYNAYSNDQKLNVAFNIGEQDDNQGAELMRQTLKDNFDINIKYYVMVDFETFAEAIDTLFPNGVEIDAKFGTVDGQAVSSVEVPDDLNMQADGTVPNQTIEVGTQKMDGRTLLNYARFRKDDDGDYGRTQRQQQVISAIINQIKDPSKLFTGSAAIGKIYALTSTNISYPFLLKEGLSVITSGQEGIEQTTIPAEGDWTDDYDMYGGLGIAIDFDKYQEELKELGLR
>NC_015215.1|WP_009854526.1|1509005_1509239_-|AbrB-family-transcriptional-regulator
MIVKSRKQGNSLMITIPSYLNVPEGTEYEVKASANGELIFSPVEKSKREFATNEDISAITDDIFKDYDDVFKELVDK
>NC_015215.1|WP_009854523.1|1507061_1508423_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MLSKNAIVDAEITDLSHEGAGVAKVDGFVFFVENALPGEKIKMRVLKVKKNIGFGKVEEYVTISEHRNQDLNVDYLRTGIADFGHLAYAEQLKFKRKQVMDNLYKTAGISDIEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSGKMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKNTNVIFGNEFKTLYGKDTIIDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPASMARDIKLYQELGYKLIKVQPVDLFPNTHHVETVVLMSRVER
>NC_015215.1|WP_009854522.1|1506289_1506763_-|GNAT-family-N-acetyltransferase
MKIETYKGKYDDEIISLILDIQNNEAKINLSLQEQPDLIDISRFYQQDGGEFWIALSDEKVVGTIGLMLKENQCAILKKFFVHKDFRSKKVGLSLYNALLKYAKEIDIQHIILDTPSVATASHRFYERAGFHIISMEELPIPYTYPDRDSILYMLDF
>NC_015215.1|WP_013643274.1|1505475_1505994_-|hypothetical-protein
MGLLDFFKKKKRLTSSDVLDDESYIKEIRHCSQEAWHQYDVLLAARGYGWKGMVDWASYMNKADLMNISTITYSSLPGSKEIECIESFRQNENDFFKMQELKDEQSSLAVGGESKTLKVPIKIVWFNQTRTLRFFTLFLDDEKLMERYIETMIRRTFLTADAMKLAKSGRID
>NC_015215.1|WP_009854535.1|1518369_1518750_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLKSYPAIFHKEDDGSFWVEFPGFGGGTEGDDVEEAMKNAREMLESSLAAYLDEGLELPKVVNMSELSVEDGFITLIQADPSPYLKSTKAIRKNVTVPEWLVRLADRENVNYSEVLTQALEKKLQL
>NC_015215.1|WP_009854536.1|1518761_1518950_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MPLTGRELAKLAVLKGWKEVRVKGSHHQFKKDGVPYILTIPIHGNKVLGVGLEKKILKDIGL
>NC_015215.1|WP_172855736.1|1519045_1519711_-|type-II-A-CRISPR-associated-protein-Csn2
MMKINFPILDEPIEILDATILTVEDVTVFSNLVRQFYSYSEECDLKLFDEKLRSLKVSELLLVTDIFGFDVNSQSMLKLIHADLESQLNDKSEVKSMIEQLANTITELLSYECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEILQIYNYLSKKKLLIFVNSGAYLTKNEMKKLIEYIKLSNQKVIFLEPRRLYDFPQYVLDSDYFLIAENMN
>NC_015215.1|WP_009854538.1|1519697_1520042_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNSANKAMIDRLQANNPKKGSITLLTVTEKQFARMIYLNGERNTSVANSDRRLVFLGEDYSDEN
>NC_015215.1|WP_009854539.1|1520038_1520905_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVIVNEHSKLSYKNNHLIFKDAYHTEMIHLEEIDILLLETTNIVLTTMLIERLVERNILIIFCDEKRLPTAMLTPYYGRHDSSLQLTNQIAWDDDVKCDVWTTIIAQKILNQSMYLGECSFFEKSQSIMELYHGLEPFDPSNREGHSARIYFNTLFGNDFSREQDNDINAGLDYGYTLLLSMFARELVVCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIVYENRNASFVKIKRELFTMFDETYSYNNKEMFLNNIVSDYTKKVVKALNHGGKGVPEFRI
>NC_015215.1|WP_009854540.1|1520904_1525017_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKKNYSIGLDIGTNSVGWAVITDDYKVPAKKMKVLGNTDKKYIKKNLLGALLFDSGETAEATRLKRTARRRYTRRKNRLRYLQEIFAEEMTKVDESFFYRLDESFLTTDEKDFERHPIFGNKAEEDAYHQKFPTIYHLRNYLADSSEKADLRLVYLALAHMIKYRGHFLIEGKLNAENTDVQKLFTDFVGVYDRTFDDSHLSEITVDVASTLTEKISKSRRLENLIKYYPTEKKNTLFGNLIALALGLQPNFKMNFKLSEDAKLQFSKDTYEEDLEELLGKIGDDYADLFTSAKNLYDAILLSGILTVDDNSTKAPLSASMIKRYVEHHEDLEKLKEFIKANKSELYHDIFKDKNKNGYAGYIENGVKQDEFYKYLKNTLSKIDGSDYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMHAILRRQGDYYPFLKEKQDRIEKILTFRIPYYVGPLVRKDSRFAWAEYRSDEKITPWNFDKVIDKEKSAEKFITRMTLNDLYLPEEKVLPKHSHVYETYAVYNELTKIKYVNEQGKESFFDSNMKQEIFDHVFKENRKVTKEKLLNYLNKEFPEYRIKDLIGLDKENKSFNASLGTYHDLKKILDKAFLDDKVNEEVIEDIIKTLTLFEDKDMIHERLQKYSDIFTANQLKKLERRHYTGWGRLSYKLINGIRNKENNKTILDYLIDDGSANRNFMQLINDDTLPFKQIIQKSQVVGDVDDIEAVVHDLPGSPAIKKGILQSVKIVDELVKVMGDNPDNIVIEMARENQTTNRGRSQSQQRLKKLQSSLKELGSNILNEEKPSYIEDKVENSHLQNDQLFLYYIQNGKDMYTGDELDIDHLSDYDIDHIIPQAFIKDDSIDNRVLTSSAKNRGKSDDVPSLDIVRARKAEWVRLYKSGLISKRKFDNLTKAERGGLTEADKAGFIKRQLVETRQITKHVAQILDARFNTEHDENDKVIRDVKVITLKSNLVSQFRKDFEFYKVREINDYHHAHDAYLNAVVGTALLKKYPKLASEFVYGEYKKYDIRKFITNSSDKATAKYFFYSNLMNFFKTKVKYADGTVFERPIIETNADGEIAWNKQIDFEKVRKVLSYPQVNIVKKVETQTGGFSKESILPKGDSDKLIPRKTKKVYWDTKKYGGFDSPTVAYSVFVVADVEKGKAKKLKTVKELVGISIMERSFFEENPVEFLENKGYHNIREDKLIKLPKYSLFEFEGGRRRLLASASELQKGNEMVLPGYLVELLYHAHRADNFNSTEYLNYVSEHKKEFEKVLSCVEDFANLYVDVEKNLSKIRAVADSMDNFSIEEISNSFINLLTLTALGAPADFNFLGEKIPRKRYTSTKECLTATLIHQSITGLYETRIDLSKLGEE
>NC_015215.1|WP_009854541.1|1525574_1525745_-|hypothetical-protein
MSLAWYYWLLFAVSWLFAILLWIKSTTIPQKWLKALFVICGLIAFALPFFWGWLVS
>NC_015215.1|WP_013643276.1|1525746_1526442_-|TIGR01906-family-membrane-protein
MNGILMKNKLWTFSTWLWLLALAVLVAIYGAWLIYPLEVDWLKLTLQVTITKDDLLKNFNILMTYLTNPLSHTLSMPDFPSSTDGLKHFRDVKHLFHLAQAVFVVMLYPSWRFWKNSRAEKSLFLHQRAFTLAAVLPVLIAVAGLLIGFDQFFTLFHEVLFPGDSTWLFNPATDPIIWVLPEEFFLHCFIIFFVTYEVIMIGLVVIARRQLAKRLQDQQKHPKTIKVERND
>NC_015215.1|WP_012962176.1|1526416_1527190_-|TIGR01457-family-HAD-type-hydrolase
MTYKGYLIDLDGTIYKGKNRIPAGERFIQRLQERNIPYVLVTNNTTRTPEKVQEMLATQFNVHTPLETIYTATMATIDYMNDMNRGKTVYVIGETGLKTAIAEAGYVEDTENPAYVVVGLDTQLTYEMLAVATLAIQKGAVFIGTNPDLNIPTERGLMPGAGSINKLLETATRVQPVFIGKPNAIIMNKALDVLGVKREEAIMVGDNYLTDIMAGIQNDIATLLVTTGFTKPEEVPTLPVKPDHVLASLDEWNFDEK
>NC_015215.1|WP_012962177.1|1527249_1527873_-|NUDIX-hydrolase
MTVDDKKWVDWLVRLQSLAQAGLAYGRDKYDIERFKEIREISVAMMAELSQLPAQKVADLFANETGYQTPKIDTRAAIFQDDKILLVQEANGKWALPGGWCDVDQSVAENTLKEAKEEAGLDVELERVIAIQDREKHNQPVSAHKICKIFSLCHAKGGHFTKNLETIASGYFACDNLPELAKSKTTKEQIAMCFTAYYDENWKTLID

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Crispr_ID: NC_015215_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015215_3

1793648-1793719

Orphan

Consensus_repeat	Method
GTGAAAAAACAGTCCACTGGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015215_3

>merge|NC_015215|3|1793648-1793719|CRISPRCasFinder
GTGAAAAAACAGTCCACTGGACTTGACTCGCTTTCTTGTTTCTAGGCGAGTGAAAAAACAGTCCGCTGGACT

>NC_015215|3|3|1793648-1793719|CRISPRCasFinder
GTGAAAAAACAGTCCACTGGACT	TGACTCGCTTTCTTGTTTCTAGGCGA
GTGAAAAAACAGTCCGCTGGACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015215.1\|WP_013643341.1\|1792182_1793184_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NC_015215.1\|WP_013643346.1\|1797098_1797746_-\|hypothetical-protein	unknown	unknown	unknown
NC_015215.1\|WP_012962382.1\|1790153_1791086_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238558
NC_015215.1\|WP_012962381.1\|1789349_1790132_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_015215.1\|WP_003066034.1\|1782647_1783277_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NC_015215.1\|WP_013643345.1\|1795809_1795953_-\|hypothetical-protein	unknown	unknown	unknown
NC_015215.1\|WP_013643347.1\|1800203_1800992_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NC_015215.1\|WP_012962390.1\|1797800_1798589_-\|pyruvate-formate-lyase-activating-protein	unknown	unknown	gnl\|CDD\|131546
NC_015215.1\|WP_013643344.1\|1794999_1795731_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NC_015215.1\|WP_013643342.1\|1793725_1794382_-\|DUF1803-domain-containing-protein	unknown	unknown	gnl\|CDD\|370139
NC_015215.1\|WP_013643338.1\|1781712_1782582_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176102
NC_015215.1\|WP_009854771.1\|1791163_1792186_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NC_015215.1\|WP_009854766.1\|1784599_1785694_-\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|235983
NC_015215.1\|WP_013643339.1\|1783434_1784598_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|224090
NC_015215.1\|WP_009854777.1\|1796016_1796949_-\|manganese-dependent-inorganic-pyrophosphatase	unknown	unknown	gnl\|CDD\|235458
NC_015215.1\|WP_080570102.1\|1801026_1803087_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NC_015215.1\|WP_009854780.1\|1798662_1799994_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NC_015215.1\|WP_013643343.1\|1794374_1794890_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368573
NC_015215.1\|WP_013643340.1\|1787721_1789173_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	unknown	unknown	gnl\|CDD\|237588
NC_015215.1\|WP_009854767.1\|1785990_1787625_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529

Protein	Function_ID	Function_description	E-value
NC_015215.1\|WP_013643341.1\|1792182_1793184_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.47884e-77
NC_015215.1\|WP_012962382.1\|1790153_1791086_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	9.71677e-61
NC_015215.1\|WP_012962381.1\|1789349_1790132_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.70463e-122
NC_015215.1\|WP_003066034.1\|1782647_1783277_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	6.37828e-145
NC_015215.1\|WP_009854777.1\|1796016_1796949_-\|manganese-dependent-inorganic-pyrophosphatase	gnl\|CDD\|235458	PRK05427, PRK05427, putative manganese-dependent inorganic pyrophosphatase; Provisional.	0
NC_015215.1\|WP_013643347.1\|1800203_1800992_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.59749e-91
NC_015215.1\|WP_012962390.1\|1797800_1798589_-\|pyruvate-formate-lyase-activating-protein	gnl\|CDD\|131546	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. [Energy metabolism, Anaerobic, Protein fate, Protein modification and repair].	3.42307e-116
NC_015215.1\|WP_013643344.1\|1794999_1795731_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	1.90561e-88
NC_015215.1\|WP_013643342.1\|1793725_1794382_-\|DUF1803-domain-containing-protein	gnl\|CDD\|370139	pfam08820, DUF1803, Domain of unknown function (DUF1803). This small domain is found in one or two copies in proteins from bacteria. The function of this domain is unknown.	3.08009e-40
NC_015215.1\|WP_013643338.1\|1781712_1782582_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.67549e-51
NC_015215.1\|WP_009854771.1\|1791163_1792186_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.11365e-80
NC_015215.1\|WP_009854766.1\|1784599_1785694_-\|cystathionine-gamma-synthase	gnl\|CDD\|235983	PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed.	0
NC_015215.1\|WP_013643339.1\|1783434_1784598_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	0
NC_015215.1\|WP_080570102.1\|1801026_1803087_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.62887e-72
NC_015215.1\|WP_009854780.1\|1798662_1799994_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	4.15934e-134
NC_015215.1\|WP_013643343.1\|1794374_1794890_-\|hypothetical-protein	gnl\|CDD\|368573	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family. Amidase_YiiX is a family of permuted papain-like amidases. It has amidase specificity for the amide bond between a lipid and an amino acid (or peptide). From the structure, a tetramer, each monomer is made up of a layered alpha-beta fold with a central, 6-stranded, antiparallel beta-sheet that is protected by helices on either side. The catalytic Cys154 in UniProtKB:Q74NK7, Structure 3kw0, is located on the N-terminus of helix alphaF. The two additional helices located above Cys154 contribute to the formation of the active site, where the lysine ligand is bound.	7.23009e-21
NC_015215.1\|WP_013643340.1\|1787721_1789173_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	gnl\|CDD\|237588	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase.	0
NC_015215.1\|WP_009854767.1\|1785990_1787625_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.16773e-115

>NC_015215.1|WP_013643341.1|1792182_1793184_+|iron-ABC-transporter-permease
MTSGKKVACHFSVLIFLLCLIFLLSLSLGYANSSLLEVCKVFLGKSDATMSFIVTQIRLPRILACMLGGGSLAMLGVLLQTLTKNPLADSGILGINAGAGLVIAIMVGLLDVTNSMMIALMPFLAMLGGILTICTVYFVSRQKNQPISPTRLIITGVGISSLLSGIMISIIANLDTSKTDYIVSWLSGKVSGGNWQTLMILAPLLLVTWLLTYSQSYALNIMSLNEETAIALGLNLKRERLYTLIFSTALAALSVVLVGNITFIGLLAGHITRQLLGSDHRISLPSSLLIGMIIFLIADTIGRVFLVGTGIPTGLVVAVIGAPYFLYLMIKTT
>NC_015215.1|WP_009854771.1|1791163_1792186_+|iron-ABC-transporter-permease
MKQLYLLFQKNKRLRAWLLFFSLCFLFILGWYLSLRFGAVAYSNAQLMSVFRHPLTDSNLQDVIFDLRLPRTIAAILVGAAMAQAGSIIQGVTRNPIADPGLLGINAGAGLALIVGYAIFGSMHYSLILIICLFGAILAAILVFGIAYHPRKGYQQLRLILAGAMISTLFSSLGQAITLYFDLSKAVIGWQSGGLAQINWKMLGIIAPFIILGLLLAQLFARQLTILSLDETVAKALGQRTFAMTMTFLAIVVILSAAAVALVGSIAFVGLIIPHFVKMFVAKDYRIILPLTAFAGSTFMLWVDLICRTINPPAETPVSAIVSIVGLPCFLWLVRKGENL
>NC_015215.1|WP_012962382.1|1790153_1791086_+|ABC-transporter-substrate-binding-protein
MKKFFAVLTTFLATFLLVACHNTSSTSDDTELSSMPKITGFSYEGDIPKNPQKVINFAYSYTGYLLELGVNVSSYSLDLEKNSPAFGDQLADAVQLTSDDTEAIAAQKPDLIIAFSTDENLDDLKAIAPVLVIEYGKSDYLEMMTNLGKVFDKENEAQEWLDNWETKTAEAKEELSQYIDSSTTFTVMDFYDKDIYLYGNNWGRGGELIYDSLGYAAPQKVQDDVFPAGWFGISQEVLGDYIGDYVVLNVSDDTKEAAASLKESDVWNNISAVKNNHVLEVDESLFYFSDPMSLDKQLDAFVSAIKQANS
>NC_015215.1|WP_012962381.1|1789349_1790132_+|ABC-transporter-ATP-binding-protein
MSDIYAENISVAYDDKVIINDLSVTIAKQKITTIIGANGCGKSTLLKALTRIHALKAGQVFIDGEAIAHLPTKEIAKKLALLPQMLEATEGISVYELVSYGRFPHQNYLGSLSDTDKEKINWAMEITKVVEFANEKVDSLSGGQRQRVWIAMALAQDTDTIFLDEPTTYLDMNHQLEILELLQKLNQDTQKTIIMVLHDLNLSARFSDELIAMKAGAIKYHGKVQDIMTADILRDIFNIEAHIVQDPIHNRPILLTYQLT
>NC_015215.1|WP_013643340.1|1787721_1789173_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase
MITLEKTLDILKNDHNFREIIFHNHYSLDWKENPSFSKISFDSREADNSTLFFTKGATFKKEYLEQAIENGLTFYVSQVDYELDIPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAFTGTKGKTTAAYFAYNILKQSHKTAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMAIAVQNGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANSKAVVVNAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQTSVPGRMEVITQTNGAKVFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIVNGERTAYAGDLNIAKNYLN
>NC_015215.1|WP_009854767.1|1785990_1787625_-|polysaccharide-biosynthesis-protein
MSENKTNMTQQQQMVRGAAWLTASNFISRLLGAFYIIPWYAWMGTHGEQANALFGMGYNIYAVFLLISTAGIPVAIAKQVSKYNTLGQEDTSYYLLRKILRLTLVLGLIFAAIMYIGSPILAAWSGGGADLVRVMKSLSWALLLFPSMSVLRGFFQGFNNLKPYAMSQIAEQIIRVIWMLLTAFMIMKIGSGDYVSAVVQSTFAAFIGMIASVLVLLFFLWREGKLQAIFSAGNNDVDIDANAIIIETIKEAIPFIITGAAIQLFQIVDQLSFINTMKLFTSHTTKELQILYAYLSSNPNKVTMILISLATAIGGAGIPLLTENFVNKDKKAAAHLVINSLQMLCMVLFPAMLGAIILAQPVYTLFYGAPNSTALWLFVGALVQVIFLALYSLLAPMLQALFENRKAIRYFGYGLIIKIVLQIPFIYFFHAYGPLLSTAIGLTIPIILMYKRIHEVTRFNRKALWRGILLVSILTVIMGVIVAIATVGLHFIVSPTTRVGSVVYIVLVGALGVLVYGFLALVTRLLDKLIGGRAKALRQKLHLE
>NC_015215.1|WP_009854766.1|1784599_1785694_-|cystathionine-gamma-synthase
MKSDCRLATILAHAGIKSDEATGALAAPIHFSTTYQHPEFGKSTGFDYTRTKNPTRATLEKTLAAIEKADYALATSSGMSAIVLAFEIFPVGAKVVAARDLYGGSFRWFNDKEKEGRFSFEYTNTEAELLAAISDDTDIVYIETPTNPLMVEFDIEKVANAAHAKGAKLIVDNTFYSPIYQNPIPLGADIVVHSATKYLAGHNDVLAGVVITNDKETYDKLFYNLNTTGPTLSPFDSYMLMRGLKTLKLRMEKSTENARDIVAFLEKLPAVKEVLYTGKGGMISFRVVDESKIPDIINSLDIITFAESLGGVESLITYPRTQTHADIPEEVRLSYGLTNDLLRLSIGIEDVEDLIDDLKHALEA
>NC_015215.1|WP_013643339.1|1783434_1784598_-|pyridoxal-phosphate-dependent-aminotransferase
MGTYDFTTRPNRLTHFTYKWQTSENDPDLLQLWVADMDFLPVPEIKEAIIDYGQEHIFGYNYFKDSLYQSVIDWERNEHGYNITKDDISFIDGVVPAISVAIQAFTEKGDAVLINSPVYYPFARTIRLNDRKLVENSLVIKNGHFEIDFDQLEKDIVDNQVKLYVFCSPHNPGGRIWSAQELQKIGVLCEKHGVILVSDEIHQDLALFGNKHHSFNTVDDRFKEFTLILSSATKTFNIAGTKNSFAIIQNPKLRKQFKRVQLANNQHEVPTLGMITTETAFTYGKPWLEELKKVIEENINYVVDYFEENTKIKVMKPEGTYLVWLDFSAYGIEQPQLDEKLQKEAKVVLNDGAHFGKEGKSFARLNVAAPLETVKEASKRIASVFGK
>NC_015215.1|WP_003066034.1|1782647_1783277_-|uracil-phosphoribosyltransferase
MGKFQVISHPLIQHKLSILRRTTTSTKDFRELVNEIAMLMGYEVLRDLPLEDVEIETPITKTTQKQLAGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETLQPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGAANIKFVCLVSAPEGVKALQEAHPDIDIYTATLDEKLNEHGYIVPGLGDAGDRLFGTK
>NC_015215.1|WP_013643338.1|1781712_1782582_+|LysR-family-transcriptional-regulator
MVSKYAIFCSVIELGSFTKTAKQLNYSQSAVSQTIKNLEEEIGTRLLTRGNEGIKLTKDGQTLYPYFQQIVQGEKQLTKKIKELQGLDKAEIRIGIFTSASRNFILPFIKAFKANYPSVNFVLKQGEYTSIYQWLETGQVDLGFTHMDYVGQLQSQILYQDSLYAVLPSKHPLAQQSEISLADLAQTELILLDEGDHSLTRTAFAKENIVPTFTYEIYDDYTILEMIRQGLGVSLLYENFLDGLSLEDLAVRQISENPFRTVVLAWKNWQTLPLAAQQFAKNISSAIHD
>NC_015215.1|WP_013643342.1|1793725_1794382_-|DUF1803-domain-containing-protein
MINIFNPDKLTRQAFFQDLINFLYQTDDVTLRQIKTNFPEVPKIDRLIEEYVQAGYIIRDNKRYTIGFDLLDSLENVSLDSQLFVDDQSAIYEDLMALTFETRLTNEANDLVLVEKTSIARSELTLSNYFFKLADNLPMSKAQEPLYDLLGDVNPQYALKYMTTFLLKFGRKDEVAQKRPDIFVETLEKLDYIRKNDQGKYELNMLFDKENLIFTSKA
>NC_015215.1|WP_013643343.1|1794374_1794890_-|hypothetical-protein
MNIQELRAGDLLFMCGISDMSQAIQKATGQYSHVAIYFDSMIYHATKDKGVIKQQLREFLKTKQHRIFVYRYPRIEAEQVQAAAEHLLGRPYNHSFYLDNGSYYCSQYIADILPIFETIPMQFGDDKHTISEFWQQYYDELGVAVPLNQSGTNPSQLAQSEHLQYLGELHD
>NC_015215.1|WP_013643344.1|1794999_1795731_+|peroxide-stress-protein-YaaA
MKILIPNAKELHTNQDAFPSQPLSAKSQAVLKALQKYSVESLANFYKINSSKADQEWTRWQRLADKQAKTYPSWLLYDGLMYRYMKRTQVTEAERHYLDNHLRIATALYGLISPMTLIAPHRLDFQGNLKIDNTSLKQFWRQQYDEEVQDDELIISLLSSEFEQVFSPNIRKRMVKIVFMENRNGKPKVHSTISKKGRGRLVSLMAEKQIETIEQIKHLTFDGFQFSPELSQDQTLTFIREQE
>NC_015215.1|WP_013643345.1|1795809_1795953_-|hypothetical-protein
MTDEKILYHKKGKHWEITLSKTSKREKVEGVIGLLVLIALIAYFLMK
>NC_015215.1|WP_009854777.1|1796016_1796949_-|manganese-dependent-inorganic-pyrophosphatase
MSKILVFGHQNPDSDAIGSSVAYAYLKRELGVDAEAVALGTPNEETTFALNYFGVEAPRVVESAKAEGADQVILTDHNEFQQSISDIRDVEVIEVVDHHRVANFETANPLYMRLEPVGSASSIVYRLYKENNVVIPKEMAGLLLSGLISDTLLLKSPTTHATDPAVAADLAEIAGVNLEEYGLALLKAGTNLATKSAEELIDIDAKTFELNGNQVRVAQVNTVDINEVLERQAEIEAAITAANTANGYSDFVLMITDILNSNSEILALGSNIDKVEAAFNFKLENNHAFLAGAVSRKKQVVPQLTESFNA
>NC_015215.1|WP_013643346.1|1797098_1797746_-|hypothetical-protein
MNSYKVLKFDDEFVYLTQDGKIKKLARDLFDFDIKLGDRVDYIQDGDIVLVLPNQDEAALDLNDDKSVKSGLLQGILNLFLETLSIHNNDLGNLKKIFSQLLVTLFMAWSLLGVIAIEISLLIESLITFIWRLLVKGVKGLHIVDNSRKYMAYRKEQEAIRNQENREEEERLLRLALEQEKTAKAEAAKDDSSDNETPDVKETNNDSTQNTTEKD
>NC_015215.1|WP_012962390.1|1797800_1798589_-|pyruvate-formate-lyase-activating-protein
MTEIDYGKVTGMIHSTESFGSVDGPGIRFVIFMQGCKMRCQYCHNPDTWAMETNQSQERTVDDVLAEALRYKHFWGKNGGITVSGGEAMLQIEFVTALFTKAKELGIHCTLDTCGFAFRDTPEYHEIVDKLLAVTDLVLLDLKEINPKQHIVVTRQPNTNILAFARYLSDKGVPVWIRHVLVPGLTDFDDDLIELGKFVATLKNVDKFEILPYHTLGEFKWHELGIPYTLEGVKPPTKERVQNAKDLMHTESYTEYMKRIHQ
>NC_015215.1|WP_009854780.1|1798662_1799994_-|HlyC/CorC-family-transporter
MEDPSQNLVLQFVLLLILTLLNAFFSASEMALVSLNRSRVEQKAEEGDKKFIRLLSVLENPNNFLSTIQVGITFISLLQGASLSASLGSVIASWFGDFVWAQTAGSVISLVFLTYISIVLGELYPKRIAMNLKENLAVISAPVIIFIGKIVSPFVWLLSASTNLLSRITPMQFDDADEKMTRDEIEYMLSNSEETLDAEEIEMLQGVFSLDELMAREVMVPRTDAFMIDINDDTQENIQEILKQNFSRIPVYDDDKDKIIGVLHTKRLLDAGFRDGFDNIVLRKILQEPLFVPETIFVDDLLRQLRNTQNQMAILLDEYGGVAGIVTLEDLLEEIVGEIDDETDKAEQFVREIGEHTYIVLGTMTLNEFNDYFDVDLESDDVDTIAGYYLTGVGNIPDQDSRETFEVDTKEKHLALTNDKVKDGRVTKLKVIFSDIEQSIEED
>NC_015215.1|WP_013643347.1|1800203_1800992_+|ABC-transporter-ATP-binding-protein
MLQVKLKNVSLERQHKLLLKNLNWEVNKGEHWAILGLNGSGKTTLLKLIMAEYWKTDGEVEVLGTPFGGTDISDIRTKIGIVGSFIAERLPANMLAEKIVLTGKYKSSILYKEYGEKELDEARQMLISIGGEHLLGRIYASLSQGEKQLLLIARSLMENPEILILDEATSGLDLFAREKLLTQIEQITSLPNAPTILYVTHHAEEITQSMTHVLLLKKGEIIAQGPKNDVLTEDILTDFYDQTVSIIPLGNERIYIKPEFKS
>NC_015215.1|WP_080570102.1|1801026_1803087_-|sodium:proton-antiporter
MESSILVIAFLLMLIVSNVINRLYPKLPLPFIQIVLGILVGVLAKETTLTLNSELFLALVIAPLNFREGQESDVTTFVKYKSIVAYLILPTVLITMLTVGYVTGKLLPVDVPLAASFALGAALAPTDAVAFLSIAKRFKFPKRVESILTIEGLLNDASGLISFQFAVTALTTGAFSLLTASFSLFWAIIGGMLVGLFFALLNRGVMAFLEKIDVADVTGALLLELSLPIVSYFVASLFGVSGIIAVVIAGLSQASRFKRIRLFDAEVDRVSQIIWETVSFILNGFVFIVFGYELTRIVEPALTNPLVNNYRLVAIVLIVTALLFLVRFVMVGFYYILHYRKGKRSSKSLLREVLLLTFSGVKGTVSIATILLLPQFESYAYSLILFTVAAVTLLSFLIGVFVLPNLAQSSDDTDTTDYVTQIAILNEVVKTLEQDLKEVEDKGPLYAAIDNYNGRIEHLILEQEPTIVKKELAYLRLMILGIESDGLEHAFSEGKIELVEYRLYQRYLQNLERQINRGFISTFSYFFTISMRVIRRLVRESLSFWPTIRHFLSGKSREIKLTEDNRDRLTELYLSNTELVLEGLQDLEGIYNSELIGFLQRSRLQEANIIESGVFVERVIAHMKPDNIDEMLRGYYLERKVIAEYEMRGDITSSYATFLRRNVNKLESYSLKDDYGTLPYNYFIIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	MK448899	Streptococcus phage Javan288, complete genome	8733-8762	2	0.933
NC_015215_2	2.13\|1518041\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1518041-1518070	30	MK448879	Streptococcus phage Javan226, complete genome	9214-9243	2	0.933
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	MK448816	Streptococcus phage Javan589, complete genome	10651-10680	3	0.9
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	MK448984	Streptococcus phage Javan562, complete genome	10651-10680	3	0.9
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	MK448985	Streptococcus phage Javan566, complete genome	11827-11856	3	0.9
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	MK202161	Streptococcus phage CHPC1282, complete genome	28104-28133	3	0.9
NC_015215_2	2.9\|1517777\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517777-1517806	30	MK448879	Streptococcus phage Javan226, complete genome	2848-2877	4	0.867
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP050836	Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-2, complete sequence	5552-5581	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP050847	Klebsiella pneumoniae strain Bckp206 plasmid pBckp206-2, complete sequence	5769-5798	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP029739	Klebsiella pneumoniae strain AR_0087 plasmid unnamed1, complete sequence	163430-163459	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP031563	Klebsiella pneumoniae strain 2-1 plasmid pKP21HI1, complete sequence	85771-85800	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP042482	Klebsiella pneumoniae strain C51 plasmid pC51_001, complete sequence	139164-139193	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP024875	Klebsiella pneumoniae strain NH25 plasmid pNH25.1, complete sequence	25581-25610	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP045194	Klebsiella pneumoniae strain YML0508 plasmid pYML0508_1, complete sequence	67695-67724	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	CP027603	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence	172007-172036	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP046613	Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-1, complete sequence	121714-121743	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP050827	Klebsiella pneumoniae strain Bckp212 plasmid pBckp212-1, complete sequence	18693-18722	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP043934	Klebsiella pneumoniae strain 555 plasmid pSCKLB555-2, complete sequence	102136-102165	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_MK773537	Klebsiella pneumoniae strain QDE2 plasmid pQDE2-C, complete sequence	56614-56643	5	0.833
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP028952	Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence	335533-335562	5	0.833
NC_015215_2	2.3\|1517381\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517381-1517410	30	MN234206	Arthrobacter phage Racecar, complete genome	74154-74183	5	0.833
NC_015215_2	2.3\|1517381\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517381-1517410	30	MN234211	Arthrobacter phage Mimi, complete genome	72832-72861	5	0.833
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NZ_CP024810	Staphylococcus haemolyticus strain 83131A plasmid p83131A-A, complete sequence	13083-13112	5	0.833
NC_015215_1	1.3\|1515910\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1515910-1515939	30	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	254285-254314	6	0.8
NC_015215_1	1.4\|1515976\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1515976-1516005	30	MN693025	Marine virus AFVG_117M63, complete genome	36096-36125	6	0.8
NC_015215_1	1.7\|1516174\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516174-1516203	30	MN693812	Marine virus AFVG_250M1204, complete genome	41159-41188	6	0.8
NC_015215_2	2.10\|1517843\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517843-1517872	30	MK448899	Streptococcus phage Javan288, complete genome	12692-12721	6	0.8
NC_015215_2	2.10\|1517843\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517843-1517872	30	MK448707	Streptococcus phage Javan227, complete genome	18155-18184	6	0.8
NC_015215_1	1.2\|1515844\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1515844-1515873	30	MT926124	Staphylococcus phage vB_SauP_EBHT, complete genome	14729-14758	7	0.767
NC_015215_1	1.3\|1515910\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1515910-1515939	30	AP013375	Uncultured Mediterranean phage uvMED DNA, complete genome, group G13, isolate: uvMED-CGR-U-MedDCM-OCT-S29-C4	4767-4796	7	0.767
NC_015215_1	1.5\|1516042\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516042-1516071	30	NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	101974-102003	7	0.767
NC_015215_1	1.5\|1516042\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516042-1516071	30	NZ_CP038855	Pantoea vagans strain LMG 24199 plasmid unnamed2, complete sequence	129007-129036	7	0.767
NC_015215_1	1.5\|1516042\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516042-1516071	30	CP053317	Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence	60907-60936	7	0.767
NC_015215_1	1.5\|1516042\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516042-1516071	30	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	42041-42070	7	0.767
NC_015215_1	1.7\|1516174\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516174-1516203	30	MF360958	Salicola phage SCTP-2, complete genome	318047-318076	7	0.767
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	NZ_CP021670	Bacillus licheniformis strain SRCM100141 plasmid pBL141-2 sequence	67323-67352	7	0.767
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	NZ_CP035189	Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence	197944-197973	7	0.767
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	NZ_CP014852	Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence	111034-111063	7	0.767
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	NZ_CP014852	Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence	152590-152619	7	0.767
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	NZ_CP014843	Bacillus licheniformis strain SCDB 14 plasmid pSCDB14, complete sequence	208-237	7	0.767
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NZ_CP009683	Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence	28214-28243	7	0.767
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	GU943068	Uncultured phage MedDCM-OCT-S05-C849 genomic sequence	12135-12164	7	0.767
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	GU943072	Uncultured phage MedDCM-OCT-S08-C304 genomic sequence	5816-5845	7	0.767
NC_015215_2	2.10\|1517843\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517843-1517872	30	MN693317	Marine virus AFVG_25M47, complete genome	58102-58131	7	0.767
NC_015215_2	2.10\|1517843\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517843-1517872	30	MN693096	Marine virus AFVG_25M80, complete genome	59656-59685	7	0.767
NC_015215_2	2.12\|1517975\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517975-1518004	30	NZ_CP028965	Burkholderia sp. IDO3 plasmid p1, complete sequence	149725-149754	7	0.767
NC_015215_1	1.3\|1515910\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1515910-1515939	30	MN692983	Marine virus AFVG_117M11, complete genome	17024-17053	8	0.733
NC_015215_1	1.5\|1516042\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516042-1516071	30	NZ_CP031947	Ruegeria sp. AD91A plasmid unnamed1, complete sequence	562560-562589	8	0.733
NC_015215_1	1.6\|1516108\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516108-1516137	30	MN693213	Marine virus AFVG_25M174, complete genome	21778-21807	8	0.733
NC_015215_1	1.6\|1516108\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516108-1516137	30	MN693464	Marine virus AFVG_25M123, complete genome	12117-12146	8	0.733
NC_015215_1	1.6\|1516108\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516108-1516137	30	MN693599	Marine virus AFVG_25M122, complete genome	22648-22677	8	0.733
NC_015215_1	1.6\|1516108\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516108-1516137	30	MN693280	Marine virus AFVG_25M171, complete genome	21773-21802	8	0.733
NC_015215_1	1.6\|1516108\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516108-1516137	30	MN693251	Marine virus AFVG_25M125, complete genome	11743-11772	8	0.733
NC_015215_1	1.6\|1516108\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516108-1516137	30	MN693438	Marine virus AFVG_25M124, complete genome	22023-22052	8	0.733
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	NC_030920	Bacillus phage Eldridge, complete genome	85245-85274	8	0.733
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	1055816-1055845	8	0.733
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	NZ_CP020951	Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence	185064-185093	8	0.733
NC_015215_1	1.8\|1516240\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516240-1516269	30	MH616963	CrAssphage sp. isolate ctbg_1, complete genome	55557-55586	8	0.733
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_AP017296	Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence	158571-158600	8	0.733
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP024790	Nostoc flagelliforme CCNUN1 plasmid pNFSY05, complete sequence	93849-93878	8	0.733
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	239274-239303	8	0.733
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NC_007410	Trichormus variabilis ATCC 29413 plasmid A, complete sequence	19449-19478	8	0.733
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	NZ_CP047243	Trichormus variabilis 0441 plasmid unnamed1, complete sequence	29496-29525	8	0.733
NC_015215_1	1.9\|1516306\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516306-1516335	30	KU594606	Cyanophage S-RIM32 isolate RW_108_0702, complete genome	55148-55177	8	0.733
NC_015215_1	1.12\|1516504\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516504-1516533	30	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	235737-235766	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	NC_049384	Enterobacter phage EspM4VN DNA, complete genome	99831-99860	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MH807820	Dickeya phage Coodle, complete genome	93820-93849	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MN813053	Dickeya phage Ds25CZ, complete genome	91522-91551	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MN813049	Dickeya phage Ds9CZ, complete genome	93978-94007	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	KM209320	Dickeya phage phiDP23.1 clone pD23.contig.46_1 genomic sequence	73226-73255	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	KM209271	Dickeya phage phiDP10.3 clone pD10.contig.42_1 genomic sequence	5621-5650	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	KM209228	Dickeya phage phiD3, complete genome	94832-94861	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MN788369	Dickeya phage Ds3CZ, complete genome	94503-94532	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	KY942057	Dickeya phage XF4, complete genome	92826-92855	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MN813048	Dickeya phage Ds5CZ, complete genome	93985-94014	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MN813051	Dickeya phage Ds20CZ, complete genome	93977-94006	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MN813052	Dickeya phage Ds23CZ, complete genome	90196-90225	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	HE600015	Dickeya phage vB_DsoM_LIMEstone1 complete genome	91649-91678	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MH807812	Dickeya phage Kamild, complete genome	94025-94054	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	KY942056	Dickeya phage JA15, complete genome	92856-92885	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MG266157	Dickeya phage PP35, complete genome	92875-92904	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	LC373201	Enterobacter phage phiEM4 DNA, complete genome	99831-99860	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	KJ716335	Dickeya phage RC-2014, complete genome	67125-67154	8	0.733
NC_015215_2	2.4\|1517447\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517447-1517476	30	MN813050	Dickeya phage Ds16CZ, complete genome	93482-93511	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NZ_CP054441	Staphylococcus saprophyticus strain UTI-058y plasmid pUTI-058y-1, complete sequence	20089-20118	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NZ_CP054445	Staphylococcus saprophyticus strain UTI-056 plasmid pUTI-056-1, complete sequence	20517-20546	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NZ_CP042047	Staphylococcus aureus strain B2-7A plasmid pSALNBL75, complete sequence	30793-30822	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NC_016770	Bacteroides phage B124-14, complete genome	36765-36794	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	HE608841	Bacteroides phage B124-14 complete genome	36765-36794	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	MT630433	Bacteroides phage vB_BfrS_23, complete genome	39040-39069	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NZ_CP054832	Staphylococcus saprophyticus strain UTI-045 plasmid pUTI-045-1, complete sequence	51192-51221	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NZ_CP025497	Staphylococcus aureus subsp. aureus strain 3020.C01 plasmid p3020.C01b, complete sequence	60315-60344	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NZ_CP016860	Staphylococcus aureus subsp. aureus strain 1969.N plasmid p1969.Nb, complete sequence	60315-60344	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NZ_CP012121	Staphylococcus aureus subsp. aureus strain USA300_2014.C02 plasmid pC02, complete sequence	60350-60379	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	MN909556	Staphylococcus saprophyticus strain 1005578 plasmid p1005578_vga, complete sequence	35108-35137	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	MN078104	Bacteroides phage Barc2635, complete genome	29342-29371	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	FJ008913	Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome	33701-33730	8	0.733
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	NC_011222	Bacteroides phage B40-8, complete genome	33701-33730	8	0.733
NC_015215_2	2.10\|1517843\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517843-1517872	30	JN638751	Bacillus phage G, complete genome	481071-481100	8	0.733
NC_015215_1	1.11\|1516438\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516438-1516467	30	MK249148	Blackfly microvirus SF02 isolate 044, complete genome	4520-4549	9	0.7
NC_015215_2	2.7\|1517645\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517645-1517674	30	MN694783	Marine virus AFVG_250M759, complete genome	27813-27842	9	0.7
NC_015215_2	2.10\|1517843\|30\|NC_015215\|PILER-CR,CRISPRCasFinder,CRT	1517843-1517872	30	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	417042-417071	9	0.7
NC_015215_1	1.11\|1516438\|30\|NC_015215\|CRISPRCasFinder,CRT,PILER-CR	1516438-1516467	30	NZ_CP011457	Anabaena sp. WA102 plasmid, complete sequence	34252-34281	10	0.667

1. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MK448899 (Streptococcus phage Javan288, complete genome) position: , mismatch: 2, identity: 0.933

actgctttacgttgaagagcttcttccata	CRISPR spacer
accgctttacgttgaagggcttcttccata	Protospacer
**.**************.************

2. spacer 2.13|1518041|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MK448879 (Streptococcus phage Javan226, complete genome) position: , mismatch: 2, identity: 0.933

agttcaccatacgcaatgactttgatgtag	CRISPR spacer
agttcaccatacgcaaccactttgatgtag	Protospacer
****************. ************

3. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MK448816 (Streptococcus phage Javan589, complete genome) position: , mismatch: 3, identity: 0.9

actgctttacgttgaagagcttcttccata	CRISPR spacer
actgctttacgtttcagagcttcttccatg	Protospacer
*************  **************.

4. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MK448984 (Streptococcus phage Javan562, complete genome) position: , mismatch: 3, identity: 0.9

actgctttacgttgaagagcttcttccata	CRISPR spacer
actgctttacgtttcagagcttcttccatg	Protospacer
*************  **************.

5. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MK448985 (Streptococcus phage Javan566, complete genome) position: , mismatch: 3, identity: 0.9

actgctttacgttgaagagcttcttccata	CRISPR spacer
actgctttacgtttcagagcttcttccatg	Protospacer
*************  **************.

6. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 3, identity: 0.9

actgctttacgttgaagagcttcttccata	CRISPR spacer
actgctttacgttgaagtgcctcttccaaa	Protospacer
***************** **.******* *

7. spacer 2.9|1517777|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MK448879 (Streptococcus phage Javan226, complete genome) position: , mismatch: 4, identity: 0.867

taatattcgaatactccgatatcaccatct	CRISPR spacer
taatactcgaatactcctatatcaccactt	Protospacer
*****.*********** *********..*

8. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050836 (Klebsiella pneumoniae strain Bckp021 plasmid pBckp021-2, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

9. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050847 (Klebsiella pneumoniae strain Bckp206 plasmid pBckp206-2, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

10. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029739 (Klebsiella pneumoniae strain AR_0087 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

11. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031563 (Klebsiella pneumoniae strain 2-1 plasmid pKP21HI1, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

12. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042482 (Klebsiella pneumoniae strain C51 plasmid pC51_001, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

13. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024875 (Klebsiella pneumoniae strain NH25 plasmid pNH25.1, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

14. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045194 (Klebsiella pneumoniae strain YML0508 plasmid pYML0508_1, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

15. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to CP027603 (UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

16. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046613 (Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-1, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

17. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050827 (Klebsiella pneumoniae strain Bckp212 plasmid pBckp212-1, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

18. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043934 (Klebsiella pneumoniae strain 555 plasmid pSCKLB555-2, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

19. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK773537 (Klebsiella pneumoniae strain QDE2 plasmid pQDE2-C, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

20. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028952 (Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

tatta-gatgtttgtgatgtctttgatgaat	CRISPR spacer
-attgtaatgtttgtgatggctttgttgaat	Protospacer
 ***. .************ ***** *****

21. spacer 2.3|1517381|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN234206 (Arthrobacter phage Racecar, complete genome) position: , mismatch: 5, identity: 0.833

ttacttctcagctgttattgaagaagatac	CRISPR spacer
ctacttctcagatgttactgaagaagaaat	Protospacer
.********** *****.********* *.

22. spacer 2.3|1517381|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN234211 (Arthrobacter phage Mimi, complete genome) position: , mismatch: 5, identity: 0.833

ttacttctcagctgttattgaagaagatac	CRISPR spacer
ctacttctcagatgttactgaagaagaaat	Protospacer
.********** *****.********* *.

23. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024810 (Staphylococcus haemolyticus strain 83131A plasmid p83131A-A, complete sequence) position: , mismatch: 5, identity: 0.833

-aatataaagatttaccattttaaaaggagg	CRISPR spacer
tagta-aaatatttactattttaaaaggagt	Protospacer
 *.** *** ******.*************

24. spacer 1.3|1515910|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 6, identity: 0.8

aggtggtggaacagttggagtagttcctgc--	CRISPR spacer
tggtggtggatcagttggagta--tcttgata	Protospacer
 ********* ***********  **.**

25. spacer 1.4|1515976|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MN693025 (Marine virus AFVG_117M63, complete genome) position: , mismatch: 6, identity: 0.8

agatttagcaggctattcagctattgaaag	CRISPR spacer
atttacagcaggcaattcagctattaaaag	Protospacer
*  * .******* ***********.****

26. spacer 1.7|1516174|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MN693812 (Marine virus AFVG_250M1204, complete genome) position: , mismatch: 6, identity: 0.8

gtgaattgttcaatcattgatgttatataa	CRISPR spacer
ttgaattgttccatcattgatgccacatca	Protospacer
 ********** **********..*.** *

27. spacer 2.10|1517843|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MK448899 (Streptococcus phage Javan288, complete genome) position: , mismatch: 6, identity: 0.8

gcattgaattaccataaggaaaagcagcgc	CRISPR spacer
gcaatgaattaccataaggaaatatagcag	Protospacer
*** ****************** ..***.

28. spacer 2.10|1517843|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MK448707 (Streptococcus phage Javan227, complete genome) position: , mismatch: 6, identity: 0.8

gcattgaattaccataaggaaaa-gcagcgc	CRISPR spacer
acattgaattaccatgaggaaaatatagca-	Protospacer
.**************.******* ..***.

29. spacer 1.2|1515844|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MT926124 (Staphylococcus phage vB_SauP_EBHT, complete genome) position: , mismatch: 7, identity: 0.767

ttgacaaggaaagtggcgtatcccaatctg	CRISPR spacer
ttgataaggaaagtggtgtatccgatgaag	Protospacer
****.***********.****** *    *

30. spacer 1.3|1515910|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to AP013375 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G13, isolate: uvMED-CGR-U-MedDCM-OCT-S29-C4) position: , mismatch: 7, identity: 0.767

aggtggtggaacagttggagtagttcctgc	CRISPR spacer
tggaggtggaacagttgtagtagtagttgt	Protospacer
 ** ************* ******  .**.

31. spacer 1.5|1516042|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

agaaccaaaaacgttttcaaccgttggctc	CRISPR spacer
agacccaaaaacgttttcagccggaaggta	Protospacer
*** ***************.***  .* *

32. spacer 1.5|1516042|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038855 (Pantoea vagans strain LMG 24199 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

agaaccaaaaacgttttcaaccgttggctc	CRISPR spacer
cgcaccacaaacattttcaaccgttgccag	Protospacer
 * **** ****.************* *

33. spacer 1.5|1516042|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to CP053317 (Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

agaaccaaaaacgttttcaaccgttggctc	CRISPR spacer
agacccaaaaacgttttcagccggaaggta	Protospacer
*** ***************.***  .* *

34. spacer 1.5|1516042|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 7, identity: 0.767

agaaccaaaaacgttttcaaccgttggctc	CRISPR spacer
cgcaccacaaacattttcaaccgttgccag	Protospacer
 * **** ****.************* *

35. spacer 1.7|1516174|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 7, identity: 0.767

gtgaattgttcaatcattgatgttatataa	CRISPR spacer
aacaattgttctatcattgatgttaattag	Protospacer
.  ******** *************  **.

36. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021670 (Bacillus licheniformis strain SRCM100141 plasmid pBL141-2 sequence) position: , mismatch: 7, identity: 0.767

actgctttacgttgaagagcttcttccata	CRISPR spacer
agggctttactttgaagtgcttcttctgaa	Protospacer
*  ******* ****** ********.. *

37. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035189 (Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

actgctttacgttgaagagcttcttccata	CRISPR spacer
agggctttactttgaagtgcttcttctgaa	Protospacer
*  ******* ****** ********.. *

38. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014852 (Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence) position: , mismatch: 7, identity: 0.767

actgctttacgttgaagagcttcttccata	CRISPR spacer
attgctttacgttgttgagcttctttaaat	Protospacer
*.************  *********. *

39. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014852 (Bacillus thuringiensis strain HD12 plasmid pHD120161, complete sequence) position: , mismatch: 7, identity: 0.767

actgctttacgttgaagagcttcttccata	CRISPR spacer
attgctttacgttgttgagcttctttaaat	Protospacer
*.************  *********. *

40. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014843 (Bacillus licheniformis strain SCDB 14 plasmid pSCDB14, complete sequence) position: , mismatch: 7, identity: 0.767

actgctttacgttgaagagcttcttccata	CRISPR spacer
agggctttactttgaagtgcttcttctgaa	Protospacer
*  ******* ****** ********.. *

41. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009683 (Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence) position: , mismatch: 7, identity: 0.767

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aatataaagatttaacattgtaaatatatt	Protospacer
************** **** **** . *

42. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to GU943068 (Uncultured phage MedDCM-OCT-S05-C849 genomic sequence) position: , mismatch: 7, identity: 0.767

aatataaagatttaccattttaaaaggagg	CRISPR spacer
gagataaagattcaccatttttaaagtact	Protospacer
.* *********.******** **** *

43. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to GU943072 (Uncultured phage MedDCM-OCT-S08-C304 genomic sequence) position: , mismatch: 7, identity: 0.767

aatataaagatttaccattttaaaaggagg	CRISPR spacer
gagataaagattcaccatttttaaagtact	Protospacer
.* *********.******** **** *

44. spacer 2.10|1517843|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN693317 (Marine virus AFVG_25M47, complete genome) position: , mismatch: 7, identity: 0.767

gcattg-aattaccataaggaaaagcagcgc	CRISPR spacer
-cgtcatgatcaccataagggaaagcagcgc	Protospacer
 *.*.. .**.*********.**********

45. spacer 2.10|1517843|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN693096 (Marine virus AFVG_25M80, complete genome) position: , mismatch: 7, identity: 0.767

gcattg-aattaccataaggaaaagcagcgc	CRISPR spacer
-cgtcatgatcaccataagggaaagcagcgc	Protospacer
 *.*.. .**.*********.**********

46. spacer 2.12|1517975|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028965 (Burkholderia sp. IDO3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

aacaacggaagtaactttaatcattgatgt	CRISPR spacer
gactacggaagtaacgttaatcatcgccat	Protospacer
.** *********** ********.* ..*

47. spacer 1.3|1515910|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MN692983 (Marine virus AFVG_117M11, complete genome) position: , mismatch: 8, identity: 0.733

aggtggtggaacagttggagtagttcctgc	CRISPR spacer
tggaggtggaacagttgtagtagtggtagt	Protospacer
 ** ************* ******  . *.

48. spacer 1.5|1516042|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031947 (Ruegeria sp. AD91A plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

agaaccaaaaacgttttcaaccgttggctc	CRISPR spacer
caaagtgcgaacgttttcatccgttggctc	Protospacer
 .** .. .********** **********

49. spacer 1.6|1516108|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MN693213 (Marine virus AFVG_25M174, complete genome) position: , mismatch: 8, identity: 0.733

gttggctttgattggtctgataacggtatt	CRISPR spacer
gttggctttgaattgtctgataatcttgac	Protospacer
*********** * *********.  *. .

50. spacer 1.6|1516108|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MN693464 (Marine virus AFVG_25M123, complete genome) position: , mismatch: 8, identity: 0.733

gttggctttgattggtctgataacggtatt	CRISPR spacer
gttggctttgaattgtctgataatcttgac	Protospacer
*********** * *********.  *. .

51. spacer 1.6|1516108|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MN693599 (Marine virus AFVG_25M122, complete genome) position: , mismatch: 8, identity: 0.733

gttggctttgattggtctgataacggtatt	CRISPR spacer
gttggctttgaattgtctgataatcttgac	Protospacer
*********** * *********.  *. .

52. spacer 1.6|1516108|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MN693280 (Marine virus AFVG_25M171, complete genome) position: , mismatch: 8, identity: 0.733

gttggctttgattggtctgataacggtatt	CRISPR spacer
gttggctttgaattgtctgataatcttgac	Protospacer
*********** * *********.  *. .

53. spacer 1.6|1516108|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MN693251 (Marine virus AFVG_25M125, complete genome) position: , mismatch: 8, identity: 0.733

gttggctttgattggtctgataacggtatt	CRISPR spacer
gttggctttgaattgtctgataatcttgac	Protospacer
*********** * *********.  *. .

54. spacer 1.6|1516108|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MN693438 (Marine virus AFVG_25M124, complete genome) position: , mismatch: 8, identity: 0.733

gttggctttgattggtctgataacggtatt	CRISPR spacer
gttggctttgaattgtctgataatcttgac	Protospacer
*********** * *********.  *. .

55. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NC_030920 (Bacillus phage Eldridge, complete genome) position: , mismatch: 8, identity: 0.733

actgctttacgttgaagagcttcttccata	CRISPR spacer
cagtcaatacgttgaagagcttctcccatg	Protospacer
    *  *****************.****.

56. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 8, identity: 0.733

actgctttacgttgaagagcttcttccata	CRISPR spacer
ggtcctatacgctgaagagcttcttccgcg	Protospacer
. * ** ****.***************...

57. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 8, identity: 0.733

actgctttacgttgaagagcttcttccata	CRISPR spacer
ggtcctatacgctgaagagcttcttccgcg	Protospacer
. * ** ****.***************...

58. spacer 1.8|1516240|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 8, identity: 0.733

actgctttacgttgaagagcttcttccata	CRISPR spacer
tcagctttacgtttaagagtttcttcatct	Protospacer
 * ********** *****.******  .

59. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017296 (Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence) position: , mismatch: 8, identity: 0.733

tattagatgtttgtgatgtctttgatgaat	CRISPR spacer
ttgatggcgttggtgatgtctttgatgaag	Protospacer
*    *..*** *****************

60. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024790 (Nostoc flagelliforme CCNUN1 plasmid pNFSY05, complete sequence) position: , mismatch: 8, identity: 0.733

tattagatgtttgtgatgtctttgatgaat	CRISPR spacer
ttgacggcgttggtgatgtctttgatgaaa	Protospacer
*    *..*** *****************

61. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 8, identity: 0.733

tattagatgtttgtgatgtctttgatgaat	CRISPR spacer
ttgatggcgttggtgatgtctttgatgaag	Protospacer
*    *..*** *****************

62. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NC_007410 (Trichormus variabilis ATCC 29413 plasmid A, complete sequence) position: , mismatch: 8, identity: 0.733

tattagatgtttgtgatgtctttgatgaat	CRISPR spacer
ttgatggcgttggtgatgtctttgatgaag	Protospacer
*    *..*** *****************

63. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047243 (Trichormus variabilis 0441 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tattagatgtttgtgatgtctttgatgaat	CRISPR spacer
ttgatggcgttggtgatgtctttgatgaag	Protospacer
*    *..*** *****************

64. spacer 1.9|1516306|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to KU594606 (Cyanophage S-RIM32 isolate RW_108_0702, complete genome) position: , mismatch: 8, identity: 0.733

tattagatgtttgtgatgtctttgatgaat	CRISPR spacer
tcggcgtagtttgtgatgactttgatgaag	Protospacer
*    *  ********** **********

65. spacer 1.12|1516504|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

cctatgatatgcccattgttatccattttg	CRISPR spacer
aatatgttatgccctttgttatccaactaa	Protospacer
  **** ******* ********** .* .

66. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NC_049384 (Enterobacter phage EspM4VN DNA, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

67. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MH807820 (Dickeya phage Coodle, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

68. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN813053 (Dickeya phage Ds25CZ, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

69. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN813049 (Dickeya phage Ds9CZ, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

70. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to KM209320 (Dickeya phage phiDP23.1 clone pD23.contig.46_1 genomic sequence) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

71. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to KM209271 (Dickeya phage phiDP10.3 clone pD10.contig.42_1 genomic sequence) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

72. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to KM209228 (Dickeya phage phiD3, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

73. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN788369 (Dickeya phage Ds3CZ, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

74. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to KY942057 (Dickeya phage XF4, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

75. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN813048 (Dickeya phage Ds5CZ, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

76. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN813051 (Dickeya phage Ds20CZ, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

77. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN813052 (Dickeya phage Ds23CZ, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

78. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to HE600015 (Dickeya phage vB_DsoM_LIMEstone1 complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

79. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MH807812 (Dickeya phage Kamild, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

80. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to KY942056 (Dickeya phage JA15, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

81. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MG266157 (Dickeya phage PP35, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

82. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to LC373201 (Enterobacter phage phiEM4 DNA, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

83. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to KJ716335 (Dickeya phage RC-2014, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

84. spacer 2.4|1517447|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN813050 (Dickeya phage Ds16CZ, complete genome) position: , mismatch: 8, identity: 0.733

gagtccgttgttgcaggtctgaatacttcg	CRISPR spacer
gattcctttgttgcaggtctgaacatcagc	Protospacer
** *** ****************.*..

85. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054441 (Staphylococcus saprophyticus strain UTI-058y plasmid pUTI-058y-1, complete sequence) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aagatgaagatttaccattttaatttagga	Protospacer
** **.*****************   ..*.

86. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054445 (Staphylococcus saprophyticus strain UTI-056 plasmid pUTI-056-1, complete sequence) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aagatgaagatttaccattttaatttagga	Protospacer
** **.*****************   ..*.

87. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042047 (Staphylococcus aureus strain B2-7A plasmid pSALNBL75, complete sequence) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aagatgaagatttaccattttaatttagga	Protospacer
** **.*****************   ..*.

88. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NC_016770 (Bacteroides phage B124-14, complete genome) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aatttagagatttaccattttaataactaa	Protospacer
*** **.**************** *.  ..

89. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to HE608841 (Bacteroides phage B124-14 complete genome) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aatttagagatttaccattttaataactaa	Protospacer
*** **.**************** *.  ..

90. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MT630433 (Bacteroides phage vB_BfrS_23, complete genome) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aatttagagatttaccattttaataactaa	Protospacer
*** **.**************** *.  ..

91. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054832 (Staphylococcus saprophyticus strain UTI-045 plasmid pUTI-045-1, complete sequence) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aagatgaagatttaccattttaatttagga	Protospacer
** **.*****************   ..*.

92. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025497 (Staphylococcus aureus subsp. aureus strain 3020.C01 plasmid p3020.C01b, complete sequence) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aagatgaagatttaccattttaatttagga	Protospacer
** **.*****************   ..*.

93. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016860 (Staphylococcus aureus subsp. aureus strain 1969.N plasmid p1969.Nb, complete sequence) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aagatgaagatttaccattttaatttagga	Protospacer
** **.*****************   ..*.

94. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012121 (Staphylococcus aureus subsp. aureus strain USA300_2014.C02 plasmid pC02, complete sequence) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aagatgaagatttaccattttaatttagga	Protospacer
** **.*****************   ..*.

95. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN909556 (Staphylococcus saprophyticus strain 1005578 plasmid p1005578_vga, complete sequence) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aagatgaagatttaccattttaatttagga	Protospacer
** **.*****************   ..*.

96. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN078104 (Bacteroides phage Barc2635, complete genome) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aatttagagatttaccattttaataactaa	Protospacer
*** **.**************** *.  ..

97. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to FJ008913 (Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aatttagagatttaccattttaataactaa	Protospacer
*** **.**************** *.  ..

98. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to NC_011222 (Bacteroides phage B40-8, complete genome) position: , mismatch: 8, identity: 0.733

aatataaagatttaccattttaaaaggagg	CRISPR spacer
aatttagagatttaccattttaataactaa	Protospacer
*** **.**************** *.  ..

99. spacer 2.10|1517843|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 8, identity: 0.733

gcattgaattaccataaggaaaagcagcgc	CRISPR spacer
cgtttgaattaccataaggataagctacaa	Protospacer
   ***************** **** .*.

100. spacer 1.11|1516438|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to MK249148 (Blackfly microvirus SF02 isolate 044, complete genome) position: , mismatch: 9, identity: 0.7

acgggaattggctaattattaaaaatataa	CRISPR spacer
acggtaattggcaaattattaaaggcgagt	Protospacer
**** ******* **********.... .

101. spacer 2.7|1517645|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MN694783 (Marine virus AFVG_250M759, complete genome) position: , mismatch: 9, identity: 0.7

aatataaagatttaccattttaaaaggagg	CRISPR spacer
tatataaagatttacaatttaaaatattat	Protospacer
 ************** **** *** .  .

102. spacer 2.10|1517843|30|NC_015215|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 9, identity: 0.7

gcattgaattaccataaggaaaagcagcgc	CRISPR spacer
gtattggattaccataaggaaaattcaaat	Protospacer
*.****.**************** . . ..

103. spacer 1.11|1516438|30|NC_015215|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011457 (Anabaena sp. WA102 plasmid, complete sequence) position: , mismatch: 10, identity: 0.667

acgggaattggctaattattaaaaatataa	CRISPR spacer
ctcctcgttggttaattattaaaaatattg	Protospacer
 .    .****.**************** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1186524 : 1195132

Bacillus_virus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009854245.1\|1186524_1187445_+	type I pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	1.6e-34	33.5
WP_003064878.1\|1187519_1187771_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_009854246.1\|1187906_1189247_-	HAMP domain-containing histidine kinase	Q8QNA2	Ectocarpus_siliculosus_virus	2.2e-08	34.0
WP_009854247.1\|1189236_1189911_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.9e-25	32.3
WP_009854248.1\|1190108_1192652_-	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	3.3e-66	24.3
WP_009854249.1\|1192874_1193528_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_009854250.1\|1193558_1194317_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-18	30.5
WP_009854251.1\|1194328_1195132_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.9e-16	28.5

DBSCAN-SWA_2

1339801 : 1349015

Bacillus_phage(37.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009854400.1\|1339801_1340293_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.3e-46	62.3
WP_173362011.1\|1340305_1341022_-	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	3.7e-63	47.5
WP_009854402.1\|1341011_1341458_-	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	5.8e-43	58.4
WP_013643189.1\|1341463_1342111_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.8e-61	54.2
WP_009854404.1\|1342352_1344122_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.0e-57	30.1
WP_013643190.1\|1344124_1345864_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-38	26.4
WP_013643191.1\|1345941_1347813_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.8e-64	32.1
WP_013643192.1\|1347809_1349015_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	1.2e-42	48.5

DBSCAN-SWA_3

1760116 : 1776014

Streptococcus_phage(76.92%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012962367.1\|1760116_1760953_-	aldo/keto reductase	A0A1V0SDE7	Indivirus	4.5e-28	32.3
WP_013643326.1\|1760965_1761787_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012962369.1\|1761891_1762764_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009854745.1\|1762900_1763257_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	8.0e-35	59.1
WP_009854746.1\|1763269_1763755_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.1e-42	52.8
WP_012962370.1\|1763813_1764041_-	hypothetical protein	NA	NA	NA	NA
WP_012962371.1\|1764141_1765320_-	3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	2.3e-179	80.9
WP_013643327.1\|1765365_1765914_-	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	3.9e-57	58.4
WP_009854749.1\|1765984_1767076_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	3.5e-174	81.8
WP_013643328.1\|1767211_1767850_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_003066000.1\|1767982_1768324_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_013643329.1\|1768380_1769616_-	ammonium transporter	NA	NA	NA	NA
WP_013643330.1\|1770016_1770883_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.1e-114	71.9
WP_013643331.1\|1770889_1771210_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	1.0e-28	60.4
WP_013643332.1\|1771202_1772003_-	signal peptidase II	NA	NA	NA	NA
WP_013643333.1\|1771999_1772875_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.8e-73	50.0
WP_013643334.1\|1772889_1773522_-	dTMP kinase	M1PSC7	Streptococcus_phage	4.2e-71	65.9
WP_012962376.1\|1773706_1774366_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	2.5e-74	65.1
WP_013643335.1\|1774539_1775250_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-17	27.4
WP_013643336.1\|1775249_1776014_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.5e-17	25.2

DBSCAN-SWA_4

1976029 : 2030693

Staphylococcus_phage(14.29%)

tRNA,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013643456.1\|1976029_1976857_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_013643457.1\|1976948_1977680_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_009854962.1\|1977782_1978370_-	3'-5' exonuclease	NA	NA	NA	NA
WP_009854963.1\|1978442_1978976_-	DUF536 domain-containing protein	NA	NA	NA	NA
WP_013643458.1\|1979197_1980370_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	8.5e-17	56.6
WP_003066499.1\|1980500_1980770_+	30S ribosomal protein S14	NA	NA	NA	NA
WP_013643459.1\|1980833_1981313_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013643460.1\|1981322_1982348_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_009854967.1\|1982456_1982858_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_009854968.1\|1982846_1983173_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_013643461.1\|1983162_1983858_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_012962496.1\|1983995_1984535_-	SIS domain-containing protein	NA	NA	NA	NA
WP_012962497.1\|1984552_1985005_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_012962498.1\|1985014_1985305_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_013643462.1\|1985329_1986685_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_013643463.1\|1986723_1987242_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_013643464.1\|1987417_1988170_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_013643467.1\|1988783_1989794_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.8e-62	41.0
WP_009854971.1\|1989803_1990244_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_013643468.1\|1990227_1990920_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_009854973.1\|1991097_1991328_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA
WP_009854974.1\|1991329_1993012_+	ribonuclease J	NA	NA	NA	NA
WP_013643469.1\|1993277_1993907_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_013643470.1\|1994094_1995534_-	glutamate synthase subunit beta	NA	NA	NA	NA
WP_039694263.1\|1995535_2000053_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_013643472.1\|2000230_2001577_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_009854980.1\|2001626_2001998_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.0e-05	35.8
WP_009854981.1\|2002086_2002623_-	aromatic acid exporter family protein	NA	NA	NA	NA
WP_009854982.1\|2002852_2004049_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_004233286.1\|2004236_2005250_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_009854983.1\|2005455_2007534_-	elongation factor G	E4ZFJ7	Streptococcus_phage	9.7e-64	29.1
WP_003066535.1\|2007734_2008205_-	30S ribosomal protein S7	NA	NA	NA	NA
WP_009854984.1\|2008225_2008639_-	30S ribosomal protein S12	NA	NA	NA	NA
WP_012962508.1\|2008928_2009741_-	pur operon repressor	NA	NA	NA	NA
WP_013643473.1\|2009897_2010836_-	HD domain-containing protein	NA	NA	NA	NA
WP_013643474.1\|2010825_2012100_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_013643475.1\|2012101_2012731_-	thiamine diphosphokinase	NA	NA	NA	NA
WP_013643476.1\|2012723_2013386_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_013643477.1\|2013392_2014265_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_013643478.1\|2015401_2015602_-	hypothetical protein	NA	NA	NA	NA
WP_039695025.1\|2015733_2017098_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_043913786.1\|2017110_2017839_-	LytTR family transcriptional regulator DNA-binding domain-containing protein	NA	NA	NA	NA
WP_009854994.1\|2017936_2018230_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_013643481.1\|2018280_2018508_-	hypothetical protein	NA	NA	NA	NA
WP_003066564.1\|2018776_2019088_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_013643483.1\|2019099_2019249_-	hypothetical protein	NA	NA	NA	NA
WP_013643486.1\|2019857_2020028_+	hypothetical protein	NA	NA	NA	NA
WP_013643487.1\|2020016_2021327_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_013643488.1\|2021331_2022063_-	response regulator transcription factor	A0A1V0E029	Clostridioides_phage	1.3e-18	24.6
WP_009855002.1\|2022079_2022406_-	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_013643489.1\|2022589_2023882_-	glycosyltransferase family 2 protein	S5WBE2	Pseudomonas_phage	3.0e-07	27.0
WP_013643490.1\|2023883_2024183_-	DUF3884 family protein	NA	NA	NA	NA
WP_013643491.1\|2024208_2024391_-	hypothetical protein	NA	NA	NA	NA
WP_013643492.1\|2024472_2024682_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013643493.1\|2024671_2025685_-	thiol reductase thioredoxin	NA	NA	NA	NA
WP_009855009.1\|2026061_2026259_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_009855010.1\|2026277_2026529_-\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_009855011.1\|2026775_2027033_+	hypothetical protein	NA	NA	NA	NA
WP_013643495.1\|2027139_2029287_+	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	1.6e-45	28.6
WP_013643496.1\|2029298_2030693_+\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA

DBSCAN-SWA_5

2188329 : 2197688

Streptococcus_phage(87.5%)

integrase

attL 2191782:2191797|attR 2197737:2197752

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012962601.1\|2188329_2189958_-	DNA primase	A0A1X9I717	Streptococcus_phage	1.1e-200	67.7
WP_013643538.1\|2189932_2190481_-	hypothetical protein	NA	NA	NA	NA
WP_013643539.1\|2190482_2190629_-	hypothetical protein	NA	NA	NA	NA
WP_012962603.1\|2190615_2190780_-	hypothetical protein	NA	NA	NA	NA
WP_012962604.1\|2190776_2191049_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	1.9e-20	54.7
WP_013643540.1\|2191051_2191393_-	hypothetical protein	NA	NA	NA	NA
WP_012962606.1\|2191404_2191599_-	hypothetical protein	NA	NA	NA	NA
WP_012962607.1\|2191602_2191833_-	hypothetical protein	NA	NA	NA	NA
2191782:2191797	attL	NA	NA	NA	NA
WP_012962608.1\|2192194_2192416_-	helix-turn-helix transcriptional regulator	X2KUC2	Streptococcus_phage	3.2e-10	48.5
WP_012962609.1\|2192563_2192956_+	helix-turn-helix transcriptional regulator	A0A1S5S7K7	Streptococcus_phage	1.5e-18	50.5
WP_013643541.1\|2192956_2193325_+	hypothetical protein	A0A2H4IZZ1	uncultured_Caudovirales_phage	5.4e-18	43.3
WP_012962611.1\|2193519_2193756_+	hypothetical protein	NA	NA	NA	NA
WP_012962612.1\|2194261_2195428_+\|integrase	site-specific integrase	A0A1X9I6A9	Streptococcus_phage	1.1e-144	66.4
WP_009855124.1\|2195553_2196381_+	hypothetical protein	M1PFV6	Streptococcus_phage	8.6e-32	61.7
WP_009855125.1\|2196410_2197688_+	toxic anion resistance protein	M1PLC8	Streptococcus_phage	3.5e-149	70.8
2197737:2197752	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2333306 : 2341443

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009855203.1\|2333306_2333960_-	transglycosylase SLT domain-containing protein	Q4Z8Z7	Staphylococcus_phage	6.4e-22	76.8
WP_009855204.1\|2334166_2334757_-	LysM peptidoglycan-binding domain-containing protein	A0A0E3XCL7	Enterococcus_phage	1.1e-20	76.9
WP_012962644.1\|2334889_2335687_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_009855206.1\|2335679_2336522_-	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	8.8e-16	28.5
WP_009855207.1\|2336497_2337340_-	energy-coupling factor transporter ATPase	W8CYL7	Bacillus_phage	1.3e-14	30.3
WP_009855208.1\|2337336_2337891_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_009855209.1\|2337900_2338845_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009855210.1\|2338908_2340198_-	insulinase family protein	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	1.2e-19	31.2
WP_013643601.1\|2340198_2341443_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	4.2e-91	42.9

Anti-CRISPR protein detection

Acr_ID: NC_015215.1|WP_013642915.1|743392_743719_-|replication-initiator-protein-A

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_015215.1|WP_013642915.1|743392_743719_-|replication-initiator-protein-A

743392_743719_-

108 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|63	0.75	1	1.0

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015215

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information