CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_008686	Paracoccus denitrificans PD1222 chromosome 1, complete sequence	4 crisprs	csa3,WYL,cas3,DEDDh	2	7	5
NC_008687	Paracoccus denitrificans PD1222 chromosome 2, complete sequence	0 crisprs	csa3	0	0	4
NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	0 crisprs	csa3,DEDDh	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NC_008686_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008686_1

551212-551697

Orphan

Consensus_repeat	Method
CNCAGGGAGGAGGAGNGN	CRT

11 spacers

The CRISPR arrays of NC_008686_1

>merge|NC_008686|1|551212-551697|CRT
CCCAGGGAGGAGGAGGGGGCACCGCCGCGCAACGCTGGCCCAGGGAGGAGGAGGGGCCGCGTATGGGGTGCGGCAATGGCAGGGAGGAGGAGGCCATTACCGCGTGCTGACGATCCCAGGGAGGAGGAGAGGACCGTCGCATTCCGTTCCGCCTTGCGGCGGTATTTCTTGGCGGCACCCTCAGGGAGGAGGAGGGAGGGTGCCGCCTGAACCGGGAAGCCCAGGGAGGAGGAGGGGCTTCACCGTATCGGTTTGGCGGCGCCTCCGGGAGGAGGAGAGAGGCGGCCGCCGGAACCGCGAGACCCAGGGAGGAGGAGGGGTCTCGCCGTATGGGGTGGCGGCATCCCCAGGGAGGAGGAGGGGGAGCCGCCTGGAACGCGAAGCCTGAGGGAGGAGGAACAGACTTCGCCGTATCTGAGCGGCGGCATCCTCAGGGAGGAGGAGGGAGGATGCCGCCTGAACCCGGACCCAAGGGAGGAGGAGTGG

>NC_008686|1|1|551212-551697|CRT
CCCAGGGAGGAGGAGGGG	GCACCGCCGCGCAACGCTGG
CCCAGGGAGGAGGAGGGG	CCGCGTATGGGGTGCGGCAAT
GGCAGGGAGGAGGAGGCC	ATTACCGCGTGCTGACGAT
CCCAGGGAGGAGGAGAGG	ACCGTCGCATTCCGTTCCGCCTTGCGGCGGTATTTCTTGGCGGCACC
CTCAGGGAGGAGGAGGGA	GGGTGCCGCCTGAACCGGGAAG
CCCAGGGAGGAGGAGGGG	CTTCACCGTATCGGTTTGGCGGCGC
CTCCGGGAGGAGGAGAGA	GGCGGCCGCCGGAACCGCGAGA
CCCAGGGAGGAGGAGGGG	TCTCGCCGTATGGGGTGGCGGCATC
CCCAGGGAGGAGGAGGGG	GAGCCGCCTGGAACGCGAAGC
CTGAGGGAGGAGGAACAG	ACTTCGCCGTATCTGAGCGGCGGCATC
CTCAGGGAGGAGGAGGGA	GGATGCCGCCTGAACCCGGAC
CCAAGGGAGGAGGAGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008686.1\|WP_011746930.1\|555879_557685_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NC_008686.1\|WP_011746931.1\|557714_559184_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NC_008686.1\|WP_157137424.1\|545428_545590_+\|hypothetical-protein	unknown	unknown	unknown
NC_008686.1\|WP_011746928.1\|554531_555500_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NC_008686.1\|WP_011746917.1\|544519_545299_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NC_008686.1\|WP_011746919.1\|546645_547338_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NC_008686.1\|WP_041529762.1\|551715_551946_-\|DUF1127-domain-containing-protein	unknown	unknown	gnl\|CDD\|227744
NC_008686.1\|WP_011746918.1\|545815_546649_+\|urea-carboxylase-associated-family-protein	unknown	unknown	gnl\|CDD\|378156
NC_008686.1\|WP_081465019.1\|555496_555883_+\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|227749
NC_008686.1\|WP_011746923.1\|549779_550406_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NC_008686.1\|WP_011746932.1\|559180_560566_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|184501
NC_008686.1\|WP_011746934.1\|561730_563131_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|234950
NC_008686.1\|WP_011746921.1\|547753_549235_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NC_008686.1\|WP_011746926.1\|552276_553380_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NC_008686.1\|WP_011746920.1\|547469_547757_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NC_008686.1\|WP_011746933.1\|560565_561648_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NC_008686.1\|WP_011746924.1\|550393_551167_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NC_008686.1\|WP_011746916.1\|544122_544449_+\|hypothetical-protein	unknown	unknown	unknown
NC_008686.1\|WP_011746927.1\|554020_554530_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|234728
NC_008686.1\|WP_011746922.1\|549258_549783_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315952

Protein	Function_ID	Function_description	E-value
NC_008686.1\|WP_011746930.1\|555879_557685_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	7.21162e-126
NC_008686.1\|WP_011746931.1\|557714_559184_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NC_008686.1\|WP_011746928.1\|554531_555500_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	1.29835e-143
NC_008686.1\|WP_011746917.1\|544519_545299_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	6.62686e-174
NC_008686.1\|WP_011746919.1\|546645_547338_-\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	3.32226e-86
NC_008686.1\|WP_041529762.1\|551715_551946_-\|DUF1127-domain-containing-protein	gnl\|CDD\|227744	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown].	1.22791e-07
NC_008686.1\|WP_011746918.1\|545815_546649_+\|urea-carboxylase-associated-family-protein	gnl\|CDD\|378156	pfam09347, DUF1989, Domain of unknown function (DUF1989). This family of proteins are functionally uncharacterized.	1.02401e-69
NC_008686.1\|WP_081465019.1\|555496_555883_+\|cell-division-protein-FtsL	gnl\|CDD\|227749	COG5462, COG5462, Predicted secreted (periplasmic) protein [Function unknown].	3.2763e-09
NC_008686.1\|WP_011746923.1\|549779_550406_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	3.33496e-63
NC_008686.1\|WP_011746932.1\|559180_560566_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|184501	PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional.	1.15555e-133
NC_008686.1\|WP_011746934.1\|561730_563131_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|234950	PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.	0
NC_008686.1\|WP_011746921.1\|547753_549235_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NC_008686.1\|WP_011746926.1\|552276_553380_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.45787e-140
NC_008686.1\|WP_011746920.1\|547469_547757_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.18276e-35
NC_008686.1\|WP_011746933.1\|560565_561648_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	0
NC_008686.1\|WP_011746924.1\|550393_551167_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	1.09567e-74
NC_008686.1\|WP_011746927.1\|554020_554530_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	3.75453e-39
NC_008686.1\|WP_011746922.1\|549258_549783_+\|hypothetical-protein	gnl\|CDD\|315952	pfam13388, DUF4106, Protein of unknown function (DUF4106). This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown.	0.00382523

>NC_008686.1|WP_011746924.1|550393_551167_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MLSYQHAYHAGNLADLYKHALLASILAYLTAKPKPLSYLETHAGRGLYDLSSPEADKTGEAAAGITRALAENWLPADHPLCLALDAVRARHGASAYPGSPLIARHFLRPGDVAHLAELHPAEHEALAEIAGFAHLHRQDGFQMAQAICPPTPRRGLLLIDPSYEVKADYDAIPRQIAKLARKWNVGVIVLWYPILTDLRHAPMVEALRRNHPEALVSEVRFPPARPGHGMVGSGMVVLNPPYGLAEEALRIEALYDR
>NC_008686.1|WP_011746923.1|549779_550406_+|N-acetylmuramoyl-L-alanine-amidase
MSPSPNHGDRRGQRPSLVVIHYTGMADGPSARARLCDPEAEVSAHWLVHEDGLTEALVPEDRRAWHAGAGSWQGCEDVNSRSIGIELANPGDRPFPEPQMAALEALLRGIMARWPIGPEGVIGHSDMAPGRKIDPGPRFDWRRLALQGLAVWPEGEGRDLSLAESLSRIGYAKEPAQLAAFRLRFRPWAEGPEDATDRRLAAALAYRS
>NC_008686.1|WP_011746922.1|549258_549783_+|hypothetical-protein
MRNLAILAVLGLAACGENTGWNPNYSAMHNGSPYAEYLQAREVALHGKGPVPTAIPVQLPAQAPTAADIAGTPAKKQPAQAAAPAAPVRAQAVPPSLLRYAQQETQAPGTRKYQRSGGSESAAARACRSYGSADAAQSAFISAGGPVIDPGGLDPDGDGFVCGWDPRPLRQSGL
>NC_008686.1|WP_011746921.1|547753_549235_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MSDLNKLTIAAARDGLRKGDFTSAELTETCLVAIEAAGALNAWCHKTPEKAREMAAAADKRIAAGDAPAMCGIPLGIKDLFCTRDVPSQAASRILDGFLPQYESTVTQNLWDAGAVMLGKLSMDEFAMGSSNESACYGPVVNPWKVDDRQLTPGGSSGGSAAAVAADLCLAATGTDTGGSIRQPAAFTGTVGLKPTYGRVSRWGVIAFASSLDQAGPMTKTVRDAAIMLGAMASVDAKDSTSAERAVPDYEAALTGDIRGRRIGIPREYRMEGMSDEIDALWHKAAEMLRDAGAEVVDITLPHTKYALPAYYVIAPAEASSNLARYDGVRYGRRARLGAGDGVVEMYEKTRAEGFGPEVQRRVMIGTYVLSAGFYDAYYNRARKVRALIKRDFDQVFADGIDAILTPATPSAAFGLGEMSGKDPVEMYLNDVFTVTVNLAGLPGISVPVGLDRQGLPLGMQLIGRPWDEGGLLNLAQSLESAAGFTAKPSRWW
>NC_008686.1|WP_011746920.1|547469_547757_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MAITEDEARKVAHLARIAVKDADLPALAQELNGILHFMEQLNEVDVEGVQPMTGVEPMRLKRRQDIVTDGEMQDLILKNAPDAREGFFAVPKVVE
>NC_008686.1|WP_011746919.1|546645_547338_-|metal-dependent-hydrolase
MKLTWLGHSGFRLEIEQAVILIDPWLSGNPMFPEDRRDEAIQGATHILLTHGHGDHTGDTLSIARELKIPVVGIYDLINTWQTHQGIEGLGFNKGGTVDLGGAKVTMVNASHSSSFDGNEGPVYAGHESGYMIAGEGHVIYVSGDTDIMADMQWMGEYHQPDIGILCAGGHFTMDMDRAAWAARKYFDFKTVIPCHYKTFPLLAQDAEVLKAGLPGVQVIEPEVMQPIPL
>NC_008686.1|WP_011746918.1|545815_546649_+|urea-carboxylase-associated-family-protein
MTRIIPEDAVERRAVRPVICYLNETLPDPDLPGLQALRLTARKSGECLVPPREARCFHVPAGHFFRITSVEGPQVGDLNLWSAADPRERFYSGKTRALHGTHLTRGDRMWSSFPNLRPMATVTEDTLEWYGIDEYGGSVHDVIGTRCDPYTHRLLSGQDYHHCCHSNLTNALMAELSLARDEAEPLVHDVLNVFMCTGFTRDSGQYFMKASPVRPGDYIEFFAEIDLIGGLSACPGGDCGSAHSSDAAACHPLLVEIFAPARSAARAQPGPSAYRWP
>NC_008686.1|WP_157137424.1|545428_545590_+|hypothetical-protein
MKTLAETQKQTAKLAVLKPAKAESHAALAVLEQMYGYFSFDPMPLEADIRHAA
>NC_008686.1|WP_011746917.1|544519_545299_+|succinate-dehydrogenase-iron-sulfur-subunit
MVQLTLPKNSRMRVGKTWPKPEGATNVRRFNIYRWDPDTGENPRIDTYFVDMDKCGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGGNHLACIYGMDEIKGDVNIYPLPHMPVVKDLVPDLTHFYAQHASVQPYLITETPTPDKEWRQSIEDRKKLDGLYECVMCASCSTACPSYWWNGDRYLGPAALLHAYRWIIDSRDEATGERLDSLEDPFKLYRCHTIMNCTNTCPKGLNPAKAIASIKHMMVDRIV
>NC_008686.1|WP_011746916.1|544122_544449_+|hypothetical-protein
MAGRGALGLGFAPALLGLAACAPAPVRISVAEAERLCMVQALDARAPRTEVGLGIGSHGYRGGFVRVDLSSDQILGRDPSQVFNECVRRRSGQQPTRPLYQQPGWRVN
>NC_008686.1|WP_041529762.1|551715_551946_-|DUF1127-domain-containing-protein
MAVLDLIHGGMHRNDIAGNGAIAKFVANVRENMARRAVYRQTLRELGELSNRDLADLGLNRGNIRSVAYEAAWGKK
>NC_008686.1|WP_011746926.1|552276_553380_+|Mrp/NBP35-family-ATP-binding-protein
MTISRERVLEELARIAVPGGGNLVSADLVRALSVESGVVRFVIEAADAAARSLGPVEAEAQRALSALPGVEKVQIVTTAPTVPRGAAPQVTARSGGEGAPPSLKIGRHPTPQAGPAPVSGVARILAIGSGKGGVGKSTLTSNLAVALARKGRRVGLLDADIYGPSQPRMLGLTGQRPTSDGQMIEPLHAHGVTVMSLGLMMKEGEAVVWRGPMLMGALQQMLNQVKWGELDVLLVDLPPGTGDVQLSLCQKAQVSGAIIVSTPQDVALIDARRAIDMFDKLKTPVLGLVENMSTYICPNCGHEAHLFGHGGVAAEAAALGLPFLGEIPLNLDLRLSGDAGTPIAAGDGPVAQSFARLAERLIDGGMA
>NC_008686.1|WP_011746927.1|554020_554530_+|division/cell-wall-cluster-transcriptional-repressor-MraZ
MARRFRGSEEVKVDAKGRVSIPAKFRRVFEASDPDWQAGKRAQLVIVYGTRDWNWLQLFTIQAMEEIEDGIAAMPRGSAARNLLENIYQGHADEAEIDGDGRLVLPQKLREKIGLTDSAFFISAGDSLKVWTPEAYAEEERALEARVPELEPGADPLSLLAPATARDEG
>NC_008686.1|WP_011746928.1|554531_555500_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MAEAPHIPVLLGPLLRAVAPVEGTWVDGTFGAGGYARGLLEQGADRVIGIDRDPAVFRMAEAWAGEYGDRLRLVEGTFSDLDSLAGGPVDGVVLDLGVSSMQLDQPERGFSFLRDGPLDMRMGGDGPTAAELLNTAPEQVIADVLYLYGEERASRRIAKAIVAARPLSRTGQLSDIVSACLPRPKPGQSHPSTRAFQAIRIWVNDEFGQLVAGLAAAERALRPGGKLAVVSFHSLEDRIVKRFMQARSNSAGGGSRYAPEAAREEPAFTLPFRRAIGPDEAELATNPRARSALLRVGIRTEAPAGRVDPAALGLPLLSERRA
>NC_008686.1|WP_081465019.1|555496_555883_+|cell-division-protein-FtsL
MMRSVLYLLTALSVMGLAFWAYRENYRTQAAISEMSDIQRQIGRLREDLGVLRAEWAYLNRPGRLRQLVDLNFERLKLVPFGSDQFVDVGQVAFPTPKAPEREPGADADMPVERPAGFPPRRPQESTP
>NC_008686.1|WP_011746930.1|555879_557685_+|penicillin-binding-protein-2
MIRTPLRPLARILRARETGENPDAIEAENRAQRHAAIQERARGSARTRLFFMSCAFALAFGTVGAKMGVLAASQPSEPRVQTTGAQIISQRADITDRHGRVLATNLLTHSLYAHPQQMVEPERAARELVRIFPDLEVERLDKDFTGKRTFVWIKKKISPEQMQAVHDIGEPGLLFGPREMRLYPNGHIAAHILGGATFGKEDVASAEVVGVAGVEKAFDHWLRDPANDGAPLMLSLDLTVQAAMEEVLGNGMKVMNAKGATGILMEIKTGEIVAMASLPDFDPNDRPRPLLKGDPSDSPLFNRAVQGQYELGSTFKIFPVAQAIDLKLVSPTTMINAKAPMKIGKYLINEFRGHNYGTLSVTDIIVKSSNVGTVRVAQLLGPDRQRDFLQKLGFFDPTPIEMSEAPTGKPLVPKRWPAVTSATVAFGHGLAASPLHLATAYATVANGGKRVMPTLIHDRSQRGGEQVLSPEAARIAVQMLRQVVVRGSGRSANVEGYEVAGKTGTADKPRPTGGYYGNKVVSTFASVFPASDPQYVLVLSLDEPSTIGAGGESRTAGATSAPVAAEVIRRVAPLLGLRPSTETQLPMVERPLPDRLKLVSN
>NC_008686.1|WP_011746931.1|557714_559184_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MRLSLLGLRGDKGRDPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTDRKGAEIAAAELVGADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTRQIWQALGHKAISLGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGLDQRRLDGVRLKAGAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGRQMAQIAGERGLKLTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAENVLAAAGLAIAAGDEAPRVIETLPGLTTVRGRMELAAVRENGAAVFVDYSHKPGALASALQSLRPHVMGRIVVVFGAGGDRDRLKRPLMGEAARQFADVVYVTDDNPRSEDPAAIRAEVMAGAGPDAIEVGDRAEAILRGVDALQPGDALLIAGKGHETGQIIGSDVYPFDDAEQASVAVAALDGKI
>NC_008686.1|WP_011746932.1|559180_560566_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MTLWTSQDAAEATGGRATRDFAVGGVSIDTRTIRPGDLFVALQAARDGHDFVARALEKGACAALVSRIPEGVAPDAPLLVVPDVLPALEALGRAGRARMRGKVVAITGSVGKTSTKEMARVALAGQGRVHAAEASYNNHWGVPLTLARMPEDTDFAIVEIGMNHPGEIEPLARLARPHVAMVTTVAAAHLEAFGAIEGIAREKGAIFRGLIQPGTAIIPEDLPVTQLLRDCADDAAAIVIGFGQQGMARPLKAETLDGVTRVRARVLGETVDFMLASAGTHFVMNAVGMLAALSAAGADVAEAAKHLSDWRPPLGRGAVEDLDGIRLIDDAYNSNPTSLSAGLATLARLTGGRRVAILGDMLELGPDEIALHAGMAGDPAMEAVDLVHTAGPRMRALHEALPQGRRGMHAETAAELAGKVGELVASGDIVLVKGSKSSKVSTVVDALRRTRQSTPPGERTA
>NC_008686.1|WP_011746933.1|560565_561648_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLYWLTNLSDGGDFFNLFRYITFRAGGAFFTALLFGFFFGRPLIDLLRRKQKKGQPIRDDGPENHFSKAGTPTMGGLLILAALTIGTLLWARLDNGYVWIVLLVTLGFAAIGFADDYAKVTKQHHAGLSGKVRLLIGLCIAAAAGAAAAWLHPAALSGELALPFFKDALINLGLLYVPFTVLVILGAANAVNLTDGLDGLAIMPVMIAAASFSVIAYMVGNANFANYLGVHFVPGTGELAVFVAALIGGGLGFLWYNAPPAAVFMGDTGSLALGGALGAIAVVTKHEIVLAIVGGLFVVEALSVIIQVLYFKRTGKRVFLMAPIHHHFEKKGWGEAQIVIRFWIIALILALIGLATLKLR
>NC_008686.1|WP_011746934.1|561730_563131_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MIPVQGVQNQTIAVLGLGRSGRATAAALAAGGARVVAWDDGVDTREQAEQEGLHLLDLTQDQNWDGISALIASPGIPHLYPKPHPVIARAYALGVPVDNDIGLFFRSFATAEWERFDTTPRVIAVTGSNGKSTTTALIHHILKETGRPTQIGGNIGTGVLSLDPAHDGEVVVLELSSYQTDLARALTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAEGGPDRAVIGVDEVEGRYLAGQLGMGAADDRVIRVSSGQKLEGFGWSVFARKGYLAEYRKGRQVASIDLRGIQGLPGAHNHQNACAAYAAARAVGIAPREIERAFHSFQGLPHRSQTVAEIGGVAWVNDSKATNVDAAAKALAAFPRIRWIAGGMGKDGGIEALAPCLGPVVKAYLIGHSARDFALQIGQTPYEIVETMEQAVARAAAEAQPGETVLLAPAAASFDQYPNFEKRGEHFTALVKALQA

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Crispr_ID: NC_008686_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008686_2

718091-718185

Orphan

Consensus_repeat	Method
GTGTCGAAGATCCTGAAGTGATCCGTCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008686_2

>merge|NC_008686|2|718091-718185|CRISPRCasFinder
GTGTCGAAGATCCTGAAGTGATCCGTCAGGATCACGGAAGGGTCCCGAGACGCGCTGCAAGCTCCGTGTCGAAGATCCTGAAGTGATCCGTCAGG

>NC_008686|2|1|718091-718185|CRISPRCasFinder
GTGTCGAAGATCCTGAAGTGATCCGTCAGG	ATCACGGAAGGGTCCCGAGACGCGCTGCAAGCTCC
GTGTCGAAGATCCTGAAGTGATCCGTCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008686.1\|WP_011747088.1\|725042_725495_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NC_008686.1\|WP_011747074.1\|710812_711985_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|99744
NC_008686.1\|WP_011747075.1\|712245_713985_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_008686.1\|WP_011747073.1\|709714_710752_-\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|99790
NC_008686.1\|WP_011747084.1\|721048_722890_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_008686.1\|WP_011747080.1\|718357_719248_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NC_008686.1\|WP_011747081.1\|719299_719692_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NC_008686.1\|WP_011747077.1\|714697_715789_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NC_008686.1\|WP_011747086.1\|723962_724208_+\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NC_008686.1\|WP_011747089.1\|725498_726200_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NC_008686.1\|WP_011747070.1\|706916_707765_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NC_008686.1\|WP_011747082.1\|719688_720102_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_008686.1\|WP_011747076.1\|713984_714701_+\|folate-binding-protein-YgfZ	unknown	unknown	gnl\|CDD\|223431
NC_008686.1\|WP_011747085.1\|723026_723938_+\|hypothetical-protein	unknown	unknown	unknown
NC_008686.1\|WP_011747078.1\|715779_716727_-\|DUF533-domain-containing-protein	unknown	unknown	gnl\|CDD\|377342
NC_008686.1\|WP_011747087.1\|724403_724943_+\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NC_008686.1\|WP_041529771.1\|708328_709561_-\|tonB-system-energizer-ExbB	unknown	unknown	gnl\|CDD\|131844
NC_008686.1\|WP_011747069.1\|705952_706936_+\|hydrogen-peroxide-inducible-genes-activator	unknown	unknown	gnl\|CDD\|176103
NC_008686.1\|WP_011747071.1\|707761_708325_-\|TonB-system-transport-protein-ExbD	unknown	unknown	gnl\|CDD\|183064
NC_008686.1\|WP_011747083.1\|720337_720991_+\|CatB-related-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100040

Protein	Function_ID	Function_description	E-value
NC_008686.1\|WP_011747088.1\|725042_725495_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	2.40225e-86
NC_008686.1\|WP_011747074.1\|710812_711985_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|99744	cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.	2.68613e-83
NC_008686.1\|WP_011747075.1\|712245_713985_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.95987e-154
NC_008686.1\|WP_011747073.1\|709714_710752_-\|siderophore-interacting-protein	gnl\|CDD\|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	5.35597e-55
NC_008686.1\|WP_011747084.1\|721048_722890_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.07427e-151
NC_008686.1\|WP_011747080.1\|718357_719248_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	4.05105e-56
NC_008686.1\|WP_011747081.1\|719299_719692_+\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	2.47456e-50
NC_008686.1\|WP_011747077.1\|714697_715789_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NC_008686.1\|WP_011747086.1\|723962_724208_+\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	4.29271e-17
NC_008686.1\|WP_011747089.1\|725498_726200_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	6.99321e-139
NC_008686.1\|WP_011747070.1\|706916_707765_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.38408e-09
NC_008686.1\|WP_011747082.1\|719688_720102_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	1.12836e-17
NC_008686.1\|WP_011747076.1\|713984_714701_+\|folate-binding-protein-YgfZ	gnl\|CDD\|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	6.3853e-48
NC_008686.1\|WP_011747078.1\|715779_716727_-\|DUF533-domain-containing-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	2.92769e-39
NC_008686.1\|WP_011747087.1\|724403_724943_+\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	6.6153e-80
NC_008686.1\|WP_041529771.1\|708328_709561_-\|tonB-system-energizer-ExbB	gnl\|CDD\|131844	TIGR02797, Biopolymer_transport_protein_ExbB, tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane. [Transport and binding proteins, Cations and iron carrying compounds].	1.5811e-107
NC_008686.1\|WP_011747069.1\|705952_706936_+\|hydrogen-peroxide-inducible-genes-activator	gnl\|CDD\|176103	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The C-terminal domain also contains the redox-active cysteines that mediate the redox-dependent conformational switch. Thus, the interaction between the OxyR-tetramer and DNA is notably different between the oxidized and reduced forms. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.87451e-74
NC_008686.1\|WP_011747071.1\|707761_708325_-\|TonB-system-transport-protein-ExbD	gnl\|CDD\|183064	PRK11267, PRK11267, biopolymer transport protein ExbD; Provisional.	5.18399e-62
NC_008686.1\|WP_011747083.1\|720337_720991_+\|CatB-related-O-acetyltransferase	gnl\|CDD\|100040	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.	7.44021e-61

>NC_008686.1|WP_011747078.1|715779_716727_-|DUF533-domain-containing-protein
MSLMKSLARVAAGVMLAKGIGTMMKNAQNRPQSGGGRGSGGLLDELFGNNTAGAGNRSTGSGGLGDMLGQVLGGRSGGAGGGAVVVGGGAPYGGSHSPRHAGTAQGGLGGLLDQLTGSRGSSGSGGGLGGILGGAAAGGLGGMLGDLLGGRGAHQGQAPQGGGLAQKDAQPQNDASFGELFNEALASGDEPTTAPTPEQNALAGLMLKAMIQAAKSDGEIDENEKTKLMSEFGELDDEERAFIREQMAAPVDAAALAREVPQGFGPQVYLMSLMAIEFDNRKEAEYLHALAEGLGLDKETVNGIHQKVGVINLYA
>NC_008686.1|WP_011747077.1|714697_715789_+|DNA-polymerase-IV
MTPDPTERIRRIVHVDMDAFYASVEQRDDPALRGKPVAVGGIQRGVVAAASYEARRYGVRSAMPSMRAMRLCPDLIFVKPRFDVYRAVSQQVRAIFAEYTPLVEPLSLDEAYLDLTDHLNGSTATRIAKEIRARIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPEAGAEFVQGLPIGRFHGIGPATAARMEAHGILTGADLARQSLDFLTARFGKSGAYYWNISRGIDTREVKPDRIRKSIGAENTYFEDLRDIAAAHEALAVLADKVWRHTTTAALRGRTVTLKVKYGDFRQITRARSLPRAVESRDEMLEMACELLAPVFADPHGVRLLGITLSGLEEARQDEPPRQLGLFDQA
>NC_008686.1|WP_011747076.1|713984_714701_+|folate-binding-protein-YgfZ
MRRILAVSGEDRVEFLQGLVTNKVGPEPCWAALLTPQGKYLADFLIVPDGERLLVDVDARLEGDLMRRLSMYKLRSKVALEPTDLTVARGTGPAPEGAIMDPRHDALGWRLYGGEGDDGSDWDAIRVAHCIPETLVELIPNETFILEAGFERLHGVDFRKGCYVGQEVTARMKHKTELRKGLVTVGIEGAAPVGTPILMADGREVGTLFTQSGDRAIAYMRFDRMGEGLVAGDARILP
>NC_008686.1|WP_011747075.1|712245_713985_+|ABC-transporter-ATP-binding-protein
MADRIHRTANLFARMWRDYLHPYSGRILLALLFLVIEGSTLGLLSWMLKPLFDRVFVGGDTDAIWWVGGVIFALFLIRAATFVINRSLMTSVSLAVSTSMQTDLLRHIMVLDGGFFQQNPPGALIERVQGDSIAVQGVWSTFIAGAGRDMVSLVSLFGVALAVDPWWTMAAVVGAPLLILPTLVVQRYIRRKMRQNRVNASQRATRLDEVLHGINAVKLNRMEDYQAGRFAQIVTRIRQAEVKMSGIGATVPALVDVVTGLGFIGVLALGGAEVTRGERTVGDFMSFFTAMALAFQPLRRLGALTGTWQIAAASLERIYAVLDMRPTIVSGPRREPPPDTTIRFADVRLAYDNHPVLNGLSFTAEAGKTTALVGPSGAGKSTVFNLLTRLIDPESGQITLGGVPLREFDLGVLRDQFSTVSQDAALFDETLRENILLGREQDDEALRRAIVAAHVADFTDALPMGLDTPAGPRGSALSGGQRQRVAIARAVLRNAPVLLLDEATSALDAQSERVVQQALDELSAGRTTLVIAHRLSTVRQADKIVVVDAGRVVEEGDHDQLMAQGGAYAALVRLQFGEE
>NC_008686.1|WP_011747074.1|710812_711985_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MSFAQGRAVLAIPGPSPVPDRVLRAMHRASPDIYGPELAAENRAMIAGLKRLAGTAGHVAPYIGNGHAGWEAANVNLLDRGERALALVSGHFGRSWAASARALGIEVEELDFDLAPPDPQRLADRLAQDREGRIRAVLVCQVDTASSARADIPALRAAMGDHPVFLAVDAIASLGCEPMRMDEWGVDLLVSASQKGLMVPPGLTFVWFSDRVKARARSGLATPYWDWTPRAEAEELWQFWGGTPPVQHIFGLNEALHILLDEETLPAAWARHEGLAQATWAALDHWGAGGHGIGPLIADPAGRARSVTAARLPNAAALREWTAAKAGVTLGIGLGAPDPDNALRIAHMGHANAHQLLGVLAVIEAGMAALSIPHGKGALEAAAAEIARLA
>NC_008686.1|WP_011747073.1|709714_710752_-|siderophore-interacting-protein
MRITPLPEFQSEALLPEQDFAPIERLIRDEAREHGLDLHTGHGRSIWCQVEMGEFGAKRRGDGVLVFARAHRAEWLDAMQQAISEHLAHHLPGAAAALRWPSAADAGQLPGNFSFAQVAGVRPLCPGFLRVRLAAPDLHRLAGGDSIHFRLVLPRSRDAAPEWPHIGANGQIVWPKGDKALHRPVYTVRRIDADAGWLDLDVFDHAGGRAAHWARTAPAGTRIGLAGPSGGGIPQVARLMLAGDETAYPAIARILESRAAQAQGEVWLLGAQADYPLPRPAGFRFRHLPGGTAALCALLRTEPPPPDSYLWMAAEKSGIASIRALMLETLGHDKARSHLAAYWSA
>NC_008686.1|WP_041529771.1|708328_709561_-|tonB-system-energizer-ExbB
MTQMSLPRHRAGTAVALTCLLLTAPLSAQESTTSGQPGPAPEVQAQPASPAAPEAAAPQTAAPETTAPATPAPATPEPAATETTPPTQAPETAAPATPATPPAATEPAPTATTPETVEPAPATPAPAAEAPAAQTPATTPETPAPATPEAAEPAGSGFLPQAVQDALAPMLTPPERDPNLPHDLSPWGMFLAADWVVKAVMIGLAFASVVTWTVLVAKVLELLGATNRAQSGIRRIEHAASLPAALASAGSRRDPVSRMIRAAAAEYDRSAPALDQAGDSGIKERVDSHLDRIEAIAGRRMSRGTGVLATIGSTAPFVGLFGTVWGIMNSFIGISQAQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARAITGYRLRLANAAAGVKRLVSRDLDFRGSVSRTEV
>NC_008686.1|WP_011747071.1|707761_708325_-|TonB-system-transport-protein-ExbD
MAGGIRETQGDDLVENHEINVTPFIDVMLVLLIIFMVAAPLATVDVNVDLPISNATPAQRPDQPVYITVKPDLTLAIGNEDVPAGGLAAALATATENNREERIFLRADKDVSYGDLMGVMNTLRETGYLKIALVGLETTGAGAALDPASPTGAEPAPAPGAAAAPAPAAPAPAQTASTPTSRGAPTP
>NC_008686.1|WP_011747070.1|706916_707765_-|energy-transducer-TonB
MSWKPSSALRESALWGTAAAVALAAHMGGALWILQRAEAAAPPGLPDPVFVELAPMPEAAAPPDEAETPEMAEAEPEPEPEPEPEPEPEPEPELAMPPLEELEPLADMNSLFPPPPDAVVLQKSERPPERPEREPEPEPKVVEKQPEPKKREKKEKAPEEQPARQRTTQVRAPQSERTAAPQGQVGTPSPRQVASWQSKVQSAVARHMQRTRFSGRGGTMTVTVRFSVDPSGRVAGASLASSTGDASIDSALNRQASRMPRLPAPPSGQTTSLVLPVKIVLR
>NC_008686.1|WP_011747069.1|705952_706936_+|hydrogen-peroxide-inducible-genes-activator
MNSTLRQITYFLAVARLGNFGRAAETVHVSQPGLSSQIAQLEARLGGTLFERGAGAGPVRLTALGERLLPVAQELIDTAKRLDALARAGRSPLSGRLRLAIIPTVAPYLIPHLVPALRANHPTLDLEMHEIATDEVISGVLSHRFDVGIMALPVSEPGIEAEAVLRDAFLVALPGGDTSFLSGSAHPESIEADRLLLLADGHCLRDQALEVCGMRSPRRKLNLEASSMATLMRMVASGMGMTLIPRLALADENRDGRLRIVPFTEPAPSRDLAVVWRRNAEAETDARTLAEAVRGLAPVLGIEPIARPAPGLPPKEPVRRRVTAGRS
>NC_008686.1|WP_011747080.1|718357_719248_+|dienelactone-hydrolase-family-protein
MTERRKASDFHPRILEIFDGYVHGRIGKRDFMVQAAQFATAGMTAAAIFEALKPNYALAQQVPPDDPAIATETASYDSPEGHGRISGLMARPAGAQGKLPAVLVVHENRGLNPYVQDVVRRLGKAGYLAFGPDGLSPLGGYPGNDDEGREMQASLDPARLMEDFFAAHEFLRDHADSTGKVGAVGFCYGGGVCNALAVAYPELAASVPFYGRQPRPEEVAQIQAPLMLHYAEKDERVNEGWPAYEAALKEQGKEYQAFFYPGTQHGFHNDTTPRHDEAAAELAWQRTLDFFAEKLS
>NC_008686.1|WP_011747081.1|719299_719692_+|VOC-family-protein
MIDHIGFPVSDLARSRAFYDRALAPLGIELLMEVTEQMTGGHGAHLGYGRDGKPFFWIGSGRSAGAGTHVAFAASDRATVDAFHAAALAAGGRDNGAPGLRPEYHPGYYGAFVLDPDGNNIEAVHHGEPA
>NC_008686.1|WP_011747082.1|719688_720102_+|GFA-family-protein
MTRYHGSCFCGAVRFEAEGDLSQGTMRCNCSFCRKMRYWEMRLPDPERFRVTHGAEILAETPRRQQDGVDMHHMFCVRCGTRLWTEGYLEEMGGRFVQVCVSALDDVPEAELIAAPVFYADGAHDAWWNPAPETRHL
>NC_008686.1|WP_011747083.1|720337_720991_+|CatB-related-O-acetyltransferase
MTADFLDAALPHPMRFPDGTLNRGLVHLNRVIDHPNIEIGDFTYASSFDPPDDWAVRLAPYTYAGAPEQLVIGRFCQIADRVRIVTASANHPMAGISTYPFAIFDHARVGDYIDQISGLPDTVIGHDVWIGDGATILPGARIGSGVIIGAGAVVGGLVPDYAVVAGNPARVMRMRFDDATIARLLALQWWHWPPARIARATAALARADVAALEELAA
>NC_008686.1|WP_011747084.1|721048_722890_+|ABC-transporter-ATP-binding-protein
MFSWFERRLDPYPADPPRMPPQGLWRFILHFSRGAEGYMLSMAACSAMIAVAEVVLFGYLGELVNRLAGADRQNFWAQEGNRLILMGAILVIGLPLLQVLFSLLMHQTLMGNFPQRIRWQAHRYLLRQSMSYFQDEFAGRIATKLMQTALAVREVAMKFMDVLVYVGVYFIGALVLAASTDGWLAIPFAGWGILYGVLLWWLIPRIGRISEAQADARAQMTGRVVDSYTNISTVKLFSHSSREEAYVRESMDGFLQTVHGQMRLASIQNIMLSTLNSLLTFSVTVLGLWLWVGGKIEVGAVAVAIPLALRLGNMSHWIMWEFAGLFENIGTVRDGIGSLSLPRMVTDARGARPLAVPEGRVEFDRVTFRYGEAARPGRGAVLDDLSLTIAPGERIGLVGRSGAGKSTLVNLMLRFHDLESGRILIDGQDISQVTQESLRAAIGVVTQDTSLLHRSIRDNIAYGRPDASEAEILRAAELAEADFIATLTDSQGRHGLDAHVGERGVKLSGGQRQRIAIARVLLKDAPILVLDEATSALDSEVEAAIQSQLDMLMQGKTVIAIAHRLSTIARMDRLVVMEQGRIVEQGTHEALLARGGIYAGLWARQSGGFLEAE
>NC_008686.1|WP_011747085.1|723026_723938_+|hypothetical-protein
MSCACPDPPLRSHALSIHLGAHKTASTHLQHSLRQVRDGLREAGLALVDPNLLRGEPLSLSLILAQGMGGPDEAGARQVLRDLRQGCPDLLISEENILGLTHRSRLFSRKGELYPRAAARLRHVIALAGDEPAVLYLSLRDPASFIVSAFALQVAGGKEIDLDSYLCGRDPARSVWLDLVGRLAAVEEVSRIVLWRYEDYPALRPQLLERLLPPGLAALVPDPPPANVGLTQAGYEWLLRRAAAEPEADIRLLARRARARFQPAGGHAPLRLLDEATHARSAENYARDIEILRAIPGVELLEP
>NC_008686.1|WP_011747086.1|723962_724208_+|preprotein-translocase-subunit-SecE
MPAGAGYLTRCKTEGKSMANPVQFISQVRAELGKITWPTRREVVTTTIMVFIMATLASIFFFLVDLLIKTGLSAVIHLIGS
>NC_008686.1|WP_011747087.1|724403_724943_+|transcription-termination/antitermination-protein-NusG
MAKRWYSVSVLSNFEKKVAEAIRQAVVEKGIEDQIDEVLVPTEEVIEIRRGKKVTSERRFMPGYVLVRMELSDKTYHLVNSINRVTGFLGAQGKPMPMRDDEVNAILHRTGEGGAEVAPRNLIRFDVGEKVNVTDGPFEGFSGMVEEVDEAANRIKVTVSIFGRPTPVELEFTQVAKTA
>NC_008686.1|WP_011747088.1|725042_725495_+|50S-ribosomal-protein-L11
MAKKVVGSLKLQIKAGQANPSPPVGPALGQRGINIMEFCKAFNAKTQEMEQGAPVPVVITYYADKSFTFETKTPPASFLLKKAAGLKPQGKRNRAKGSEKPGRQTAGTVTAKQVREIAEAKMKDLSANDVEAAMQIILGSARSIGIEVKG
>NC_008686.1|WP_011747089.1|725498_726200_+|50S-ribosomal-protein-L1
MAKLSKKQVSARAAFAGKSNLAVEEAVKLVKENASAKFDETVEIAMNLGVDPRHADQMVRGVVTLPNGTGKDVRVAVFARGPKADEAKAAGAEIVGAEDLMETIQSGKIEFDRCIATPDMMPLVGRLGKILGPRNLMPNPKVGTVTMDVKAAVEAAKGGEVQFKAEKAGVVHAGVGKASFEIEKLAENIRAFVDAVNRAKPSGAKGTYVKKVSISSTMGPGVSLDLGSTAAAQ

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Crispr_ID: NC_008686_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008686_3

743527-743621

Orphan

Consensus_repeat	Method
GTGTCGAAGATCCTGAAGTGATCCGTCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008686_3

>merge|NC_008686|3|743527-743621|CRISPRCasFinder
GTGTCGAAGATCCTGAAGTGATCCGTCAGGATCACGGAAGGGTCCCGAGACGCGCTGCAAGCTCCGTGTCGAAGATCCTGAAGTGATCCGTCAGG

>NC_008686|3|2|743527-743621|CRISPRCasFinder
GTGTCGAAGATCCTGAAGTGATCCGTCAGG	ATCACGGAAGGGTCCCGAGACGCGCTGCAAGCTCC
GTGTCGAAGATCCTGAAGTGATCCGTCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008686.1\|WP_011747099.1\|740161_742285_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NC_008686.1\|WP_010400227.1\|744794_745103_+\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NC_008686.1\|WP_011747104.1\|746859_747699_+\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NC_008686.1\|WP_011747094.1\|732339_736548_+\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NC_008686.1\|WP_011747097.1\|738155_738995_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371463
NC_008686.1\|WP_011747095.1\|736779_737055_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379084
NC_008686.1\|WP_157137425.1\|737159_737330_-\|hypothetical-protein	unknown	unknown	unknown
NC_008686.1\|WP_010399029.1\|739288_739660_+\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NC_008686.1\|WP_011747106.1\|748366_749089_+\|30S-ribosomal-protein-S3	unknown	unknown	gnl\|CDD\|234722
NC_008686.1\|WP_011747103.1\|746467_746764_+\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NC_008686.1\|WP_011747105.1\|747986_748367_+\|50S-ribosomal-protein-L22	unknown	unknown	gnl\|CDD\|234793
NC_008686.1\|WP_011747092.1\|727880_732029_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|181983
NC_008686.1\|WP_011747101.1\|745113_745851_+\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NC_008686.1\|WP_010400236.1\|747702_747981_+\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NC_008686.1\|WP_074810713.1\|737316_738156_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_008686.1\|WP_011747107.1\|749101_749515_+\|50S-ribosomal-protein-L16	unknown	unknown	gnl\|CDD\|236411
NC_008686.1\|WP_011747102.1\|745850_746471_+\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NC_008686.1\|WP_011747100.1\|743730_744531_-\|hypothetical-protein	unknown	unknown	unknown
NC_008686.1\|WP_011747098.1\|739672_740143_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NC_008686.1\|WP_011747093.1\|732031_732343_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008686.1\|WP_011747103.1\|746467_746764_+\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	6.98022e-41
NC_008686.1\|WP_010400227.1\|744794_745103_+\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	3.96185e-68
NC_008686.1\|WP_011747097.1\|738155_738995_+\|hypothetical-protein	gnl\|CDD\|371463	pfam11316, Rhamno_transf, Putative rhamnosyl transferase. Most members of this family are uncharacterized, but one is a putative side-chain-rhamnosyl transferase.	1.3654e-105
NC_008686.1\|WP_011747101.1\|745113_745851_+\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	3.21837e-125
NC_008686.1\|WP_011747095.1\|736779_737055_+\|hypothetical-protein	gnl\|CDD\|379084	pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	0.006858
NC_008686.1\|WP_010399029.1\|739288_739660_+\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	1.83911e-86
NC_008686.1\|WP_011747106.1\|748366_749089_+\|30S-ribosomal-protein-S3	gnl\|CDD\|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	4.52123e-158
NC_008686.1\|WP_011747104.1\|746859_747699_+\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NC_008686.1\|WP_011747105.1\|747986_748367_+\|50S-ribosomal-protein-L22	gnl\|CDD\|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	1.34438e-56
NC_008686.1\|WP_011747092.1\|727880_732029_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|181983	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'.	0
NC_008686.1\|WP_011747102.1\|745850_746471_+\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	3.08282e-107
NC_008686.1\|WP_010400236.1\|747702_747981_+\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	3.81392e-61
NC_008686.1\|WP_074810713.1\|737316_738156_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.20737e-08
NC_008686.1\|WP_011747107.1\|749101_749515_+\|50S-ribosomal-protein-L16	gnl\|CDD\|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	1.24626e-91
NC_008686.1\|WP_011747094.1\|732339_736548_+\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NC_008686.1\|WP_011747098.1\|739672_740143_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	3.66007e-107
NC_008686.1\|WP_011747099.1\|740161_742285_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0

>NC_008686.1|WP_011747099.1|740161_742285_+|elongation-factor-G
MAREYPLERYRNFGIMAHIDAGKTTTTERILFYTGKNHKMGETHEGASTMDWMEQEAERGITITSAATTTFWQRHEDADFTPDDSERCRFNIIDTPGHVDFTIEVERSLAVLDGAICLLDGNAGVEPQTETVWRQADRYKVPRIVFVNKMDKIGADFFKCVAMIKDRTGGTPCPIALPIGAEDKLEGIVDLIKMEEWVWKGEDLGASWVRQPIRDELQDVAEEWRGKMIELAVEQDDEAMEAYLDGNEPDEATLRKLIRKGTLSLSFFPVMAGSAFKNKGVQPLLNAVVDFLPAPTDVPAYLGFAPGDETETRNIERSASDDQPFSALAFKIMNDPFVGSLTFTRIYSGQLKKGDQMLNATKGKRERVGRMMVMHAINREEIEEAFAGEIIALAGLKETTTGDTLCDPAKPVVLETMTFPEPVIEIAVEPKSKADQEKMGLALQRLAAEDPSFRVETDMESGQTIMKGMGELHLDILVDRMKREFKVEANIGAPQVAYRETISQPAEIDYTHKKQTGGTGQFARVKLQIEPTEPGEGYSFESKIVGGAVPKEYIPGVEKGIKSVMDSGPLAGFPVIDFKVALIDGAFHDVDSSVLAFEIAARAGMREGLKKAGAKLLEPIMRVEVVTPEEYTGSIIGDLTSRRGMVRGQDTRGNANVIDAFVPLANMFGYINNLRSMSSGRAVFTMQFDHYEAVPQNISDEIQKKYA
>NC_008686.1|WP_011747098.1|739672_740143_+|30S-ribosomal-protein-S7
MSRRHAAEKREVLPDAKYGDRVLTKFMNNLMIDGKKSVAERIVYNALDRVQGKLKREPIEVFHEALDNVKPSVEVRSRRVGGATYQVPVEVRPSRREALAIRWLIDASKKRNEHTMEERLAGELADAVNGRGTAVKKREDTHKMADANKAFSHYRW
>NC_008686.1|WP_010399029.1|739288_739660_+|30S-ribosomal-protein-S12
MPTIQQLIRKPRQPKVQRSKSQHLQSCPQKRGVCTRVYTTTPKKPNSAMRKVAKVRLTNGFEVISYIPGEKHNLQEHSVVLIRGGRVKDLPGVRYHILRGVLDTQGVKDRRQRRSKYGAKRPK
>NC_008686.1|WP_011747097.1|738155_738995_+|hypothetical-protein
MRVQMLGLCRFSYLGGRGFQVMHETLAERRAFLYDPERLARRWFWFENVTLPGLLAQTDPDFTLVLMTGPDLPEPWLSRLRELAGIMPQARLELVPPMEKHLDACMAAIAPHIEPDADVVGHFRQDDDDAVAIDYIRDARTDFAAMRPLWERRRRLSCDYSRGLVLKVTRDGVSVEQRVIHNASAGLTVYLPPDAQRSAVHFQHWKIGLSMPGVTLAGKAMFVRSLNHDNDSGAIGAGYPCPDDPAGRGRILVERFRIDLDTLDRAARDFGLPGADRPR
>NC_008686.1|WP_074810713.1|737316_738156_+|DMT-family-transporter
MMLSMAAFICNDALMKAVTQTLPLYESIAIRGALVLLVMLLVAQAQGGVRLRVPRGDVWPLALRTVADVVSTVLYLLALRRMALADISAIMQALPLAVTLAAALFFRERLGWRRLLAIGIGFLGVLLILRPGTGAFDMWSAIALAAMLLIVLRDLATRTFSAGVGSSAIAFYAALAVMLTGFVLGTGESWRVPTVAELSLLALAALFLTVGYITAVATMRVGEIAVVAPFRYTSLVWAVVLGLAIFGEWPDLWTWAGSALVVGAGIYTILRERQLQRRG
>NC_008686.1|WP_157137425.1|737159_737330_-|hypothetical-protein
MLSIIRAEPRKLSAALAEKTCGSAGGRPFRLNERNGVRMAIPGCFSMLRKGAMERP
>NC_008686.1|WP_011747095.1|736779_737055_+|hypothetical-protein
MQLCGHCGSEVKENFSVCSGCGANLRRSLWPVVIGGVVVVFGVAMLLDALLALTSDFSWAMRNGGIGCVVLAIGYLIFRSGWKKRWYRRNA
>NC_008686.1|WP_011747094.1|732339_736548_+|DNA-directed-RNA-polymerase-subunit-beta'
MNQELATNPLNPLAAPRQFDEIKISLASPEEILAWSYGEVKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYRGLVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLSYGQLLTEEEFLDAQDQYGADAFTANIGAEAIREMLANIDLAATAEQLREELKEATGELKPKKIIKRLKIVESFLESGNRPEWMVLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRMLQESVDALFDNGRRGRVITGNNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTTMEREGMKGEGMAFTSLEEVEHALASGAVHLHARITARLPQIDENGNEVITRFETTPGRLRLGALLPKNAKAPFELVNRLLRKKDIQNVIDTVYRYCGQKESVIFCDQIMGLGFREAFRAGISFGKDDMVVPPTKWDLVEETQDQVKQFEQQYLDGLITQGEKYNKVVDAWSKCNDRVTDAMMKTISATKKDEKGAELEPNSVYMMAHSGARGSVSQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQDCIIREHDCGTDHAITASAAVNDGEVVSPLSERVLGRVAAEDVLVPGEDVVIVRKNELIDERKADEIEAAGVQNVRIRSALTCESDDGVCALCYGRDLARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFIAAAQEGTVAFENESTLENANGELIVMSRNMQLHIKSATGDTLASHKLFYGSKLFVREGDAVARGQKMFEWDPYTLPIIAEKAGVAKYVDLISGISVRDETDDATGMTQKIVTDWRSAPKGNELKPEIIIVDQDGEPVRNEQGNPVTYPMSVEAILSVEDGQEIKAGDVVARIPREGAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIEPADDTLEPVEYMVPKGKHIPVQEGDFVQKGDYIMDGNPAPHDILRIMGIEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKIEILDSGDTTLLKGEHVDRDEFEEENAKIEAKGGRQATGEPVLLGITKASLQTRSFISAASFQETTRVLTEAAVQGKRDKLVGLKENVIVGRLIPAGTGGATARVRRIATDRDQEVIEARRAEAEAAAALIAPEDTPAEVGGED
>NC_008686.1|WP_011747093.1|732031_732343_+|hypothetical-protein
MNVAIRHSGVLLSLTALAGCGVEIARIEDGNPRRERGYEFVASTFNASNNDAVPANRMLRAAVKHCRLPYDNARETIPHSGAYGVHGTWMMDFACSAPEKDTK
>NC_008686.1|WP_011747092.1|727880_732029_+|DNA-directed-RNA-polymerase-subunit-beta
MAQAYVGQKRIRRYYGNIREVLEMPNLIEVQKSSYDLFLRSGDAEGHQDGEGIQGVFQSVFPIKDFNETATLEFVKYELEKPKYDVEECQSRDMTYAAPLKVTLRLIVFDVDETTGAKSVKDIKEQDVYMGDMPLMTQNGTFIVNGTERVVVSQMHRSPGVFFDHDRGKTHSSGKLLFACRIIPYRGSWLDFEFDAKDLVFARIDRRRKLPVTTLLYALGMDQEGIMDAFYNTVDYKLQRAGKGQAAGWVTKFFPERVRGTRPSFDLVNAETGEIITKAGDKVTPRLVKQLAEKGDINLLLPFEKIVGRFVAKDIINEQTGLIYAEAGDEITVEYDRDGEISGGLLKVLLDNGIEDIPVLDIDHVNVGPYIRNTMAADKNMSRDGALMDIYRVMRPGEPPTVEAASALFDSLFFDSERYDLSAVGRVKMNMRLDLDAPDTQRTLRKEDIIACIRGLVELRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRMERAIRERMSGVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTDKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGQNIGLINSLATFARVNKYGFIETPYRKVVEGKVTDEVVYMSATEEMRHTIAQANATLDESGKFVDELVSTRQAGDFMLNPVEAVDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEATVARDSGAAIMARRGGIIDQVDAQRIVIRATEDLGAGDAGVDIYRLRKFKRSNQSSTINQRPLVKVGDKVVKGQVVADGPSTDQGELAIGRNVVVAFMPWNGYNYEDSILISERIHRDDVFTSIHIDEYEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGAYGTIVEVRVFNRHGVDKDERALQIEREEVERLARDRDDELAILERNIYARLKSLIMGKEVVKGPKGIRAGAVVDEDLLGQLSRGQWWQLAVADEDTAKEVEALNQQFDAQKRALDNRFDDKVEKVRQGDDLPPGVMKMVKVFVAVKRKLQAGDKMAGRHGNKGVVSKVVPIEDMPFLSDGTPVDLVFNPLGVPSRMNVGQILETHMGWASRGLGIKIDEALQDYRRNGDMTPVREAMQNGYGDDFYAETFEGMEDETLLEHADAVRGGVPISTPVFDGAKEADINDALRRAGFDTSGQSIVFDGRTGEQFARPVTVGMKYVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDEE
>NC_008686.1|WP_011747100.1|743730_744531_-|hypothetical-protein
MTIVVVLFVALLVCAVVAAAYLTTVIPLFGLPVASGWSDLSGAFTTAAAIFTGITLIGVVFSLRHQALDGAKQRHALEQSLAAQKDALHHLSTAARALKDQVASLERRADAAETQLALQLDERRIARLRELRNRFLNAGKPGEASIAELQPSSELAQDDVRRLIPDDWSAGLRLLLRTLHAMIRTGGKDSDIGREAEAIVEELRERISKQEKVALFLAELPMRAPTGYGGSQLARLLRHFQLFPYIENRDECLERFLMMHRVGEPD
>NC_008686.1|WP_010400227.1|744794_745103_+|30S-ribosomal-protein-S10
MQSQNIRIRLKAFDYRVLDASTQEIVNTAKRTGAQVRGPIPLPNKIEKFTVLRGPHIDKKSRDQWEIRTHKRLLDIVDPTPQTVDALMKLDLAAGVDVEIKV
>NC_008686.1|WP_011747101.1|745113_745851_+|50S-ribosomal-protein-L3
MLRTGVIAKKLGMTRLFLEDGRQVPVTVLHVDNVQVIAQRTAEQDGYVALQLGAGEAKAKRTTAALRGHFAKANVAPKRKIAEFRVSPENLVEVGEEIVADHYFEGQYVDIAGTSIGKGFAGAMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGKVFKGKKMAGHLGAVRVTTQNLQVVKTDAERGLIMVKGSVPGSKGGWVTIKDAVKKPLAESTVFPAATRSKAVQAEAAAPAEAAAPEGDN
>NC_008686.1|WP_011747102.1|745850_746471_+|50S-ribosomal-protein-L4
MKLDVITLDAGKAGDIDLSDDIFGLEPRADLLHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGARHGSRKAPIFRHGGVYKGPTPRSHAFDLPKKVRALGLKHALSAKAAAGELVVVDSLNIAEAKTAAVAKAVKENGWKRVLVIDGAEVNENFARAARNLEGVDVLPSMGANVYDILRRDTLVLTRAGVEALEARLK
>NC_008686.1|WP_011747103.1|746467_746764_+|50S-ribosomal-protein-L23
MSVKPEHYDVIVKPIITEKATLVSDANAYVFEVAKDSSKPAIKQAVEALFNVKVKAVNTTITKGKTKRFRGRPGVRSDVKKAYVTLEAGNSIDVSTGL
>NC_008686.1|WP_011747104.1|746859_747699_+|50S-ribosomal-protein-L2
MALKSYKPTTPGQRGLVLIDRSELWKGRPVKSLTEGLTKNGGRNNTGRITMRRKGGGAKRLYRIVDFKRTKFDVSATVERIEYDPNRTAFIALIKYEDGEQAYILAPQRLAVGDKVIAGAKVDVKPGNAMPFSGMPIGTIVHNVELKPGKGGQIARSAGTYAQFVGRDGGYAQIRLSSGELRLVRQECMATIGAVSNSDHSNQNFGKAGRNRHKGIRPSVRGVAMNPIDHPHGGGEGRTSGGRHPVTPWGKGTKGTRTRSNKSTDKYILRSRHAKKKGR
>NC_008686.1|WP_010400236.1|747702_747981_+|30S-ribosomal-protein-S19
MARSVWKGPFVDAYVLRKAEKARESGKSDVIKIWSRRSTILPQFVGLTFGVYNGQKHIPVSVTEEMIGQKFGEYSPTRTYYGHAADKKAKRK
>NC_008686.1|WP_011747105.1|747986_748367_+|50S-ribosomal-protein-L22
MGKEQNPRRVAENEAFAKTKMLRTSPQKLNLVAAMIRGKKVDKALADLTFSSKRIAGDVKKCLQSAIANAENNHNLDVDNLIVAEAWVGKNLVMKRGRPRARGRYGKIMKPFSEITIKVRQVEERA
>NC_008686.1|WP_011747106.1|748366_749089_+|30S-ribosomal-protein-S3
MGQKVNPIGMRLQVNRTWDSRWYADDKDYGNLLLEDLKIRDFIKKEAKQAGVSRVVIERPHKKCRVTIYAARPGVIIGKKGADIETLRKKLANFTGSELHLNIVEVRKPELDAQLVAESIAQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVSGRLGGAEIARTEWYREGRVPLHTLRADIDYALSEASTPYGIIGVKVWIFKGEIMEHDPQARDRRATEAQDGPSPRGPRRDRDRDAR
>NC_008686.1|WP_011747107.1|749101_749515_+|50S-ribosomal-protein-L16
MLQPKRTKFRKQHKGRIHGEAKGGFNLNFGSYALKAIEPERVTARQIEAARRAITRHMKRQGRVWIRIFPDVPVSSKPTEVRMGKGKGSVDYWAARVHPGRIMFEIDGVNDTIAREALRLGAQKLPVLTRIVAREDW

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Crispr_ID: NC_008686_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008686_4

2425977-2426406

Orphan

I-C

Consensus_repeat	Method
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	PILER-CR
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	CRISPRCasFinder
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	CRT

6 spacers

The CRISPR arrays of NC_008686_4

>merge|NC_008686|4|2425977-2426406|PILER-CR,CRISPRCasFinder,CRT
GTTTCGATCCACGCCCCCGCGAAGGGGGCGACGCTTGGATATGCCCGATGTTCGCCGGTTCGAGATGTTTCGATCCACGCCCCCGCGAAGGGGGCGACATAGGACGAACCCCGCGCCGCCATCGGGATACAGGTTTCGATCCACGCCCCCGCGAAGGGGGCGACAGGCAGCAATCGCGCTGGCTGGGGCAGGAGTGCTGTTTCGATCCACGCCCCCGCGAAGGGGGCGACCGACCGTCGCTCGGATCGACGACGCCCCGGAATAGGTTTCGATCCACGCCCCCGCGAAGGGGGCGACTGGGGCGCGCGGATCGCGCCCGATGGTGACACGAGTTTCGATCCACGCCCCCGCGAAGGGGGCGACGACATGACGGCGCACCATCATTTCATAGGATTTCAGTTTCGATCCACGCCCCCGCGAAGGGGGCGAG

>NC_008686|4|1|2425977-2426406|PILER-CR
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	GCTTGGATATGCCCGATGTTCGCCGGTTCGAGAT
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	ATAGGACGAACCCCGCGCCGCCATCGGGATACAG
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	AGGCAGCAATCGCGCTGGCTGGGGCAGGAGTGCT
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	CGACCGTCGCTCGGATCGACGACGCCCCGGAATAG
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	TGGGGCGCGCGGATCGCGCCCGATGGTGACACGA
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	GACATGACGGCGCACCATCATTTCATAGGATTTCA
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAG

>NC_008686|4|3|2425977-2426406|CRISPRCasFinder
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	GCTTGGATATGCCCGATGTTCGCCGGTTCGAGAT
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	ATAGGACGAACCCCGCGCCGCCATCGGGATACAG
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	AGGCAGCAATCGCGCTGGCTGGGGCAGGAGTGCT
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	CGACCGTCGCTCGGATCGACGACGCCCCGGAATAG
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	TGGGGCGCGCGGATCGCGCCCGATGGTGACACGA
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	GACATGACGGCGCACCATCATTTCATAGGATTTCA
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAG

>NC_008686|4|2|2425977-2426406|CRT
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	GCTTGGATATGCCCGATGTTCGCCGGTTCGAGAT
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	ATAGGACGAACCCCGCGCCGCCATCGGGATACAG
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	AGGCAGCAATCGCGCTGGCTGGGGCAGGAGTGCT
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	CGACCGTCGCTCGGATCGACGACGCCCCGGAATAG
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	TGGGGCGCGCGGATCGCGCCCGATGGTGACACGA
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAC	GACATGACGGCGCACCATCATTTCATAGGATTTCA
GTTTCGATCCACGCCCCCGCGAAGGGGGCGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008686.1\|WP_128492954.1\|2423383_2424337_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271181
NC_008686.1\|WP_049792331.1\|2422230_2423145_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271181
NC_008686.1\|WP_011748704.1\|2428011_2428923_+\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NC_008686.1\|WP_011748712.1\|2436329_2436920_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NC_008686.1\|WP_011748707.1\|2431060_2432530_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NC_008686.1\|WP_011748703.1\|2426534_2427872_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366451
NC_008686.1\|WP_011748708.1\|2432539_2433400_-\|hypothetical-protein	unknown	unknown	unknown
NC_008686.1\|WP_011748693.1\|2409814_2411014_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_008686.1\|WP_049792332.1\|2435326_2436346_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|236515
NC_008686.1\|WP_011748701.1\|2424333_2424609_-\|hypothetical-protein	unknown	unknown	unknown
NC_008686.1\|WP_011748706.1\|2429741_2431064_+\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|274511
NC_008686.1\|WP_128492953.1\|2411013_2413254_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NC_008686.1\|WP_128493011.1\|2434830_2435160_-\|SoxS-protein	unknown	unknown	gnl\|CDD\|239249
NC_008686.1\|WP_011748702.1\|2424702_2425491_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_008686.1\|WP_011748692.1\|2408430_2409807_-\|outer-membrane-efflux-protein	unknown	unknown	gnl\|CDD\|273829
NC_008686.1\|WP_157137442.1\|2413327_2419963_-\|BapA-prefix-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|380149
NC_008686.1\|WP_041529968.1\|2428964_2429660_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226996
NC_008686.1\|WP_157137438.1\|2420088_2420493_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_008686.1\|WP_011748698.1\|2422040_2422346_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_008686.1\|WP_011748709.1\|2433456_2434749_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461

Protein	Function_ID	Function_description	E-value
NC_008686.1\|WP_128492954.1\|2423383_2424337_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	3.26665e-19
NC_008686.1\|WP_049792331.1\|2422230_2423145_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	5.56957e-13
NC_008686.1\|WP_011748704.1\|2428011_2428923_+\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	2.06911e-69
NC_008686.1\|WP_011748712.1\|2436329_2436920_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.86416e-61
NC_008686.1\|WP_011748707.1\|2431060_2432530_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NC_008686.1\|WP_011748703.1\|2426534_2427872_-\|hypothetical-protein	gnl\|CDD\|366451	pfam01076, Mob_Pre, Plasmid recombination enzyme. With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation).	8.13652e-05
NC_008686.1\|WP_011748693.1\|2409814_2411014_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	7.54255e-93
NC_008686.1\|WP_049792332.1\|2435326_2436346_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|236515	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB.	9.41994e-178
NC_008686.1\|WP_011748706.1\|2429741_2431064_+\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|274511	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking].	1.06958e-50
NC_008686.1\|WP_128492953.1\|2411013_2413254_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NC_008686.1\|WP_128493011.1\|2434830_2435160_-\|SoxS-protein	gnl\|CDD\|239249	cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.	3.66449e-06
NC_008686.1\|WP_011748702.1\|2424702_2425491_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.04864e-06
NC_008686.1\|WP_011748692.1\|2408430_2409807_-\|outer-membrane-efflux-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.1053e-35
NC_008686.1\|WP_157137442.1\|2413327_2419963_-\|BapA-prefix-like-domain-containing-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	8.1303e-30
NC_008686.1\|WP_041529968.1\|2428964_2429660_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|226996	COG4649, COG4649, Uncharacterized protein conserved in bacteria [Function unknown].	8.93518e-18
NC_008686.1\|WP_157137438.1\|2420088_2420493_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.08228e-15
NC_008686.1\|WP_011748698.1\|2422040_2422346_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	2.39691e-36
NC_008686.1\|WP_011748709.1\|2433456_2434749_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0

>NC_008686.1|WP_011748702.1|2424702_2425491_+|helix-turn-helix-transcriptional-regulator
MKQDESSICDFCDDDEAPDDSYLSVGDPHGVHPWQPPSRPVSHLLKKVRLNLGLTQDQMGDLMKVTGRNYNNYERERVQNVPAPALQRLADHTGIAAAHLLTGRSPSLDYVTILDEVYALQKTVWDLCQRPDGKLYGMNTCLSPEELRDVIKALLSDREYRRYYEIDPYPELTKNDILETVATHTDFYKDAGWEWARDNDPEYYGFAPFPCPAMYVVPRFQDMAEYRRYSELRCQIEATLTSDERTLYSEWLSTKPKRSPEN
>NC_008686.1|WP_011748701.1|2424333_2424609_-|hypothetical-protein
MASILPERRTAMPKIFDLGHTPEEWPAKLRPRGVELSPRTLRSKARAHGQYFAIGRAIFITPDQMNEILLREVKQFAGAGDPNPAPRPSVR
>NC_008686.1|WP_128492954.1|2423383_2424337_-|tyrosine-type-recombinase/integrase
MNGISCGGGDMSAFWDHYNRRLKGREPLPTKRNFKTLRLSYVESDAFKHLKPRTKRDYQKYMEHIISIWGDLDPRKIETHHIYKLHQANADHWRQANYLVQVFVVLLNHARLIGFLKKEHGNPAKGIPLFKQPGDGWEPWPDEVRAEFEELAPPRPRLVYELSIGLGQRIGDTHKIRWDHIKDGEYDFTQGKTDKPLLVPLTNRLAAYLSTVKKEGLTIVCGRDGRPADYRTVTEEMRKIKAAMKHPETQRYVTHGLRKNATIELYQAGCDDEMVKAVTGHSGVEMLKKYGGRVRQRELARRAQDARNRAEQNKSGT
>NC_008686.1|WP_049792331.1|2422230_2423145_+|tyrosine-type-recombinase/integrase
MSPRRPRNAKTAPPVGFWRRTSWAAAIEILRKSDRWADKSARYRQDLEPVLDYLVEKIGKRDVSRLTKADIYDAMDKNTHRVRFANYIPVAISMIAKEVIRKRWLTDNPAKGIERLNVPKNRRQPHIPWPDIAVQKWRAEAGPLERLIFEIGVGSVQRPGDWVCFTWGDYDPAGTGTLRLRQSKGDKPLILPCTEALKAALDAAKAALPFSPLPSRHIITKQDGSRMDYRRMAEIMLKERRRLGLEAYDLHALRYRGVMELAWAGCDDDEIMSYSGHSTKAMVRKYAGEARQIMRARQARAKRC
>NC_008686.1|WP_011748698.1|2422040_2422346_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MSAQRSDLRRISIAAAQDVLRQKPTGGAVFAFRGRRGDRLKLLHWDGQGFCLYYKVLEKGRFPWPMRGDGAVRLTSAQLAMLWEGIDWRRPDWGAPPARVG
>NC_008686.1|WP_157137438.1|2420088_2420493_-|helix-turn-helix-domain-containing-protein
MSVTSFPHPVDIAVGRNIRKWRRLCGLSQKQVAERIGVSMQQLQKYETAVNRISASRLVEIANVLQVPPAELLAATGCYEAVGMDQYNRAEALVEILSGVSDSTLNLLMAMLHQISSERENSGTEVGINSSPLQ
>NC_008686.1|WP_157137442.1|2413327_2419963_-|BapA-prefix-like-domain-containing-protein
MAVTIISKEDGARRVVELSAIRLDGPSTVRLPFRKTDVDRYTRDGDDLLIHLNSGEIIRVENYYVDQPSTRSELQFVDDDGAIAWLDGEGLAAALAALMIGGILIGSGGSSGDDADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADVDAIDDEGYAGIDLQTVTEPPVTGAIDYTWWLGAFGIVLGDTEDTYNFTVDPGTLTDLEIDIHSASWAAILDNVSIVLQKQNPDGSWTTVADNSSTGLIDLIGIFGQTTTIAIDGLTEGSYRFTMSNWSLVTLPGSVSADFTFTNHNLDTLVDTVAAEGNLFDDNGNGGDVVPAGTELSIFDLQGNEITVNSTVNVTGQYGTLTVHSDGSYSYEPFEDGTNIGQQDVFTYKLTNGGQEDTATLTINIVEADNLPEDASAAMATFLSVDDGEIPSDWLGEGSDDAEIPAPAESDVEPVATDFLASTEEDLHGTHTV
>NC_008686.1|WP_128492953.1|2411013_2413254_-|type-I-secretion-system-permease/ATPase
MDTRETASADQPMTASLDAPGWVTCLGHVARHYGISFSAQSALNSAAWNAGKPQADQLALLGRHLGLRVRLFAPEKLELTAWRLPVVCELNDGTIGIVSSLSKSGEAGLLLAGEQDATIVAVADLVPRIRQLVIARPLRTLVDERVDNYIAPYREGWLRRFALPDLRPYGHVMIATLTANALGLTGIIFSKQVYDRVVPAESFNTLYVLFIGVMMAALFDFIMRRTRTKIVDMLGKRADIRLSDQVFGHAMRVRNSARPKSTGSFVAQLRDLESLREMLTSTTISVLADLPFFFMFLFVFWYIGGSLALVPAVAVLAMILPGLLVQKRLNRYVNEGMREASMRNAMLIEAVQGIEDIKSLQAEDRFQQRWNHFNAVAADAQLKQRNITSALQAWAHAVQMSVFATVVFVGAPKVIAGDITTGTLVACSILGSRMMGPMAQFSQIFSRLQQAKLSYESVDAVMRMPVDHPDRESRIGVAMLLGGYHLRGAEFFHDPGKARSVLSIEDLKIAPGDKVAVLGRIGAGKSTLLHALAGMIEPGEGEVLLDDMALGQIDPSDLRRDVGLLTQDSRLFHGTIRDNLMLGAPQATDAEILEALKISGAIEFVSRMAQGLDYPLLEDGRGLSGGQRQALMLARLILRNPRIVLLDEPTASMDDQTERTLIAALKEWMVGRTVVLATHRMRVLDLVDRVVVVDRGKVSFDGEKDAFLRRMRAGGRPAPVPRPKLVTGKPPAAAPVPAAVDPVREE
>NC_008686.1|WP_011748693.1|2409814_2411014_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MMGSQAANTEDVGLIFGEEDEVRLTRSKRVVLAFFALLASGLVWAHFAVLDEVSTGTARVVPTMREQVIQSLEGGILTSLEVRPDEVVEPGQILARLDPTRNEAEVEESASKYRAALATATRLQAEITGQPLVFPEELSDFPDLIAVETQLYAERKRSLEAKLEMLDQAIDLTGQELTINERLKATGATSNIDVLRLKKQKIDLEMQKSDTAAQFHVQAREDLTRAEAEIAALRPIVRSRSDVVTRLTLRSPVRGIVKNIEVSTIGGVVSPNGKLMDIIPLDDQLMIEAKITPRDIAFIRPGLSATVKVSAYDYAVYGGLKGEVVTISPDTIQDEINRDQFYYRVLIRAESDALVNDAGQRFPIVPGMMATVDIHTGQKTVLEYLIQPFNRAGEAMRER
>NC_008686.1|WP_011748692.1|2408430_2409807_-|outer-membrane-efflux-protein
MTGFKKSSVRKRAFVPTRRAICRQAAVLPLVLALAGCASGPPSETVRKIGERGESLQPLAPGDGKGARGAVRSALLLDPEVREQASLTGANVDQIAVERAALLPSLSFGLVGGVGTAGAGDPDLELSGKQLLVDFGGTKRAVEAADVNLQIQYLKFQRAVDESIATGLVTYRQVAMLEEMVSVKAAQLAAMQDLHKLIAERIDIGASSAPDLLETRNRLERAEFELLDAKLELSETRDKLLRLSGQSRGGTIPDFPQNCTPPGGETDGLRIARLELVKARLNLEEAERARFPRISLNPLGRAAVGGGGISTGLNVGVESPLFEGGAIKARENAARNRRQSAEALVETEERNIRLDDLRLRRQISSLKEKRAMLARQIEILTETRDLYRSQYIDLGIRPITDLLDMEESLFGRQVELVEAKFDLQERLVECAARSKALRRDLGLTQFQLYGYPLTTDGF
>NC_008686.1|WP_011748703.1|2426534_2427872_-|hypothetical-protein
MEAHKQTYSRKGNSKSRSVRDVADEAERLDGACPHVGNSQPPTILEGIRPSEVVEVIEQRIAEQNKLLRRLRKEQPDRKGDLRTIRSDTHVMLGSVFSFPDPVEDMDQAEYLRWRRDVIAFAKADAAWNGAEVLSIVEHRDEAHPHVHVLAVPICADDNMRMDAKRCHEGHREQDRHKDHGWSGSPSRSYKQAMRGWQDRYHAAVGAKHGQARTGPRRRRLDRAAWKAEQERLKAQKAAEIATERAAEARRLADEEERRLSAVTWDTVARRLREAEAVHAIATGGLIAAIRQVDPDPVLLERLETPGQMGSWTNHDADRNREMSLALAPVLSDGLEALRQPPTGPGLLGGLSGFLRGLAGWVNRLADTSPRWLKWPETVAYVAHGARQAFGTTYTASTLAGVIEASPAWQSFTGDARARLDQARTVQALTNPRVSLPDAPSHRGI
>NC_008686.1|WP_011748704.1|2428011_2428923_+|EamA-family-transporter-RarD
MSEWTKGFWAMIAVCVTWGLSPIFYRALAGVPTVEVLAHRTIWSLALFLVVLGAQGRLGQLRAALTGAVVRRIALAALTISANWGLFIWAVQAGHVVQSSLGYYIFPLAAVMTGVLVFGESLTRVQAMAILLAVLAVVLLTWGLGVAPWISLGIALTFVLYGALKKSLPLGPVLSVAAEVALLAPLALGWLIAQALGLMPAPLAQPLGFGANLPVTLLLIASGAITAVPLILFSYAARRIEMATVGLMFYLNPTLQFLCAVLLFGETFTTWHMIAFAMIWAALAVYSASALRQSRRAPPLANG
>NC_008686.1|WP_041529968.1|2428964_2429660_+|tetratricopeptide-repeat-protein
MANQNDSFIDEVTEDLRRDRLFALFRRYGWIALLVILGIVGGAAWREYSSSQAETRARAWGDAIMAARQGDDPITALSAVDPAGSAGRKVLSEMLAAGAEAQAGLPQKAAERLKAAAAGLQNDPVLHDLALLKAVMVAGPAMDAAERDRLLADLSKPGAPFELLALEQKAVALIGAGRTEDAVMLIGQIQQKDGLSEPLRRRLSEMMITLGVEPEPSEGSLPQTMPAPAAN
>NC_008686.1|WP_011748706.1|2429741_2431064_+|PQQ-binding-like-beta-propeller-repeat-protein
MTRLSLIAALAGLTALSACTQREAPLPGERLDPRAVLSPDGPATEGAQAPTTAALSLPPVRANADWPQRAGNAAHAPGNVALGAGTRRLWAVPIGTASDKRHRITAEPIVAAGLVFAMDSQSTVTATTAGGGRVWSVDLRPAGESGRSVSGGGLAFEGNRIFVTTGYGELVALDARTGAVAWRQKVGSTIGGAPTVVNGVVYVLDREQTGWAVRANDGKVMWRSFGNKDMAGVMGASAPAVSGSTVVFPSNTGALAGVDARDGSQLWVANVGGTRVGRAVSYFRDMTGDPVILGNTLYAGTSAGGVGAYDMSNGMMKWHAREGAASPVLAAGNSVFLVNDQAQLIRLDAANGARVWAQKLPYFTESVIRKQDRVWNHHGPVLAGSKLYLASSDGYLRVFDPASGALIGTAQIPGGAAAAPAVAGQTLYVVTHDGQLIAYR
>NC_008686.1|WP_011748707.1|2431060_2432530_+|ribosome-biogenesis-GTPase-Der
MSFTLAIVGRPNVGKSTLFNRLVGKRLALVDDQPGVTRDLREGAGRLGDLRFIVVDSAGLEIAEDDSLQGRMRRLTERAVDEADVCLFVIDARVGVTAADEYFADILRRRARHVILAANKAEGRAGEAGAMEAYALGLGEPLRISAEHGEGMDDLYRALVPLAEAFEAQNVQQAPETDVAVEDGDDETEDWRPSESKPLQIAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDSISVSTNFMGTPVRIFDTAGMRKKARVTDKVEKLSVADGLRAVRFAEVVVVLLDVGIPFEQQDLRIADFAETEGRAVVVAANKWDLEEDKPEKLKELREAFERLLPQLKGAPLVTVSARTGKGLDRLHNAILKAHEVWNRRIPTARLNQWLSTMTEAHPPPAPGGRRIRLRYITQVKTRPPAFVVMATHTDKLPDSYQRYLVNGLRQDFDMPGTPIRLTFRDQGTKNPYKDKASKINQSGALSKHKHRQKPKGS
>NC_008686.1|WP_011748708.1|2432539_2433400_-|hypothetical-protein
MSRAGASLLILAVLVFTASTLLYALRSEPAALPLAEPGLALSPWQGYPGARPPPVDLPGLFLRPEGLGMAGLLGMTWAALAYHAGRRWFERRRMRLARAAALEEERELPPQNAGPPTPGHLLRLHERDDSLGEHAPLILGLLAGAIWPWFLRGHPVIAFLLSAAMLAGFLAAALRGIRAGSLVQHSSSLGFVAGWGLLVSFAVFTGLLRDRLGVPQEAAAVIALLIGSVAAVSVQLRLGRRIGFSVAVIWGLIGIAASTVTTDAAIATMTVIAIAIIAVALVRVTT
>NC_008686.1|WP_011748709.1|2433456_2434749_-|serine--tRNA-ligase
MHDIRAIRENPAAFDAALALRNLPPVSPEILSLDADRRSRIAAAEAAQAEQNKASKEAGAAKGRGDEAEFQRLRALVTAKKDETARLQAEATALDAKLRELLLAVPNLPLDGVPPGKDEDDNVEIRRWGEPRAFDFAPREHFEIEGVRPGMDFETAAKLSGSRFVVLKGGVARVHRALAQFMLDLHTEEHGLAETWAPVLVLSEMMEGTGQLPKFGEDSYQTREGWWLIPTSEVTLTNTVNGDLVDHASLPRRMVAHSQCFRSEAGSAGRDTSGMLRQHQFEKVEMVSITDAESGVEEHARMTRCAEAVLERLGLPYRTIVLCGGDMGFGARITHDLEVWLPGQGKYREISSVSYCGDFQARRMNARYRPAGGGKPEFVHTLNGSGLAVGRTLIAVLENGQQADGSVKLPEVLHPYLGGRTRLGADGVLA
>NC_008686.1|WP_128493011.1|2434830_2435160_-|SoxS-protein
MAAMAAGPGTAASGLQLLMVRRRGCVYCAQWDREIAPVYGRHPEGRAAPLLMVDLDGPWPDGLALARQPWLTPTFILLRGGIEMVRVEGYPGRERFFGVLRDMLAEAAG
>NC_008686.1|WP_049792332.1|2435326_2436346_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MGMDELTEPLTQGNRRALSRAITLIESTRPDHRARALALLAELPQRQALRIGLSGTPGVGKSTFIEAFGKMLTAQGLKVAVLAVDPSSARSGGSILGDKTRMETLSRDPNAFIRPSPSRAELGGVARRTRETVRLCEAAGFDVVLIETVGVGQSETLVAEMSDLFILLLAPAGGDELQGVKRGIMEIADIILVNKADGDLRETAMRTVADYAGALRLLRKRPYDPEGFPKALPVSAYTGEGLDKAWSNMTWLADWRREHGHFDGRRAEQARHWFLAELRAGLLARLDRPEVRARLREMGDAVARGESDPDSAAAHMLDWLGAAECDSLTAGRQAHERRA
>NC_008686.1|WP_011748712.1|2436329_2436920_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MNAGPDPQADPGAALTALLGQPPQGPAALAAAWFDTPLGAMIAVADSDRLHLLEFVEREALPAELRRLAKGAGGRIGPGRTAVTDRAEAQITAYFASGLTAFDLPLALHGTDFQQQVWRELQRLPAGATISYAELARRIGRPSAIRAVARANGANQIAVVIPCHRVIGSDGGLTGYGGGLWRKRALLDHETRHFPA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_008686_1	1.1\|551230\|20\|NC_008686\|CRT	551230-551249	20	NC_008686.1	2096737-2096756	2	0.9
NC_008686_1	1.1\|551230\|20\|NC_008686\|CRT	551230-551249	20	NC_008688.1	204920-204939	2	0.9
NC_008686_4	4.3\|2426141\|34\|NC_008686\|PILER-CR,CRISPRCasFinder,CRT	2426141-2426174	34	NC_008687.1	758492-758525	2	0.941

1. spacer 1.1|551230|20|NC_008686|CRT matches to position: 2096737-2096756, mismatch: 2, identity: 0.9

gcaccgccgcgcaacgctgg	CRISPR spacer
gcgccgccgcgcagcgctgg	Protospacer
**.**********.******

2. spacer 1.1|551230|20|NC_008686|CRT matches to position: 204920-204939, mismatch: 2, identity: 0.9

gcaccgccgcgcaacgctgg	CRISPR spacer
gcaacgccgcggaacgctgg	Protospacer
*** ******* ********

3. spacer 4.3|2426141|34|NC_008686|PILER-CR,CRISPRCasFinder,CRT matches to position: 758492-758525, mismatch: 2, identity: 0.941

aggcagcaatcgcgctggctggggcaggagtgct	CRISPR spacer
aggcggcaatcgcgctggctggggcaggggtgct	Protospacer
****.***********************.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008686_1	1.1\|551230\|20\|NC_008686\|CRT	551230-551249	20	NZ_CP043475	Mycobacterium grossiae strain DSM 104744 plasmid pGP01, complete sequence	20224-20243	1	0.95
NC_008686_1	1.1\|551230\|20\|NC_008686\|CRT	551230-551249	20	NZ_CP043475	Mycobacterium grossiae strain DSM 104744 plasmid pGP01, complete sequence	40658-40677	1	0.95
NC_008686_1	1.1\|551230\|20\|NC_008686\|CRT	551230-551249	20	NZ_CP032156	Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence	56555-56574	1	0.95
NC_008686_1	1.7\|551492\|22\|NC_008686\|CRT	551492-551513	22	AY576796	Actinoplanes phage phiAsp2, complete genome	48407-48428	2	0.909
NC_008686_1	1.7\|551492\|22\|NC_008686\|CRT	551492-551513	22	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	526353-526374	3	0.864
NC_008686_1	1.8\|551532\|25\|NC_008686\|CRT	551532-551556	25	AP014720	Arthrobacter sp. Hiyo8 plasmid pHiyo8-1 DNA, complete genome, strain: Hiyo8	18201-18225	3	0.88
NC_008686_1	1.6\|551449\|25\|NC_008686\|CRT	551449-551473	25	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	674355-674379	4	0.84
NC_008686_1	1.6\|551449\|25\|NC_008686\|CRT	551449-551473	25	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	414606-414630	4	0.84
NC_008686_4	4.3\|2426141\|34\|NC_008686\|PILER-CR,CRISPRCasFinder,CRT	2426141-2426174	34	NZ_CP010956	Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence	81223-81256	6	0.824
NC_008686_4	4.5\|2426274\|34\|NC_008686\|PILER-CR,CRISPRCasFinder,CRT	2426274-2426307	34	NZ_CP016593	Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence	196345-196378	9	0.735
NC_008686_4	4.5\|2426274\|34\|NC_008686\|PILER-CR,CRISPRCasFinder,CRT	2426274-2426307	34	NC_017386	Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence	131545-131578	9	0.735
NC_008686_4	4.5\|2426274\|34\|NC_008686\|PILER-CR,CRISPRCasFinder,CRT	2426274-2426307	34	NC_014621	Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence	98286-98319	9	0.735
NC_008686_4	4.5\|2426274\|34\|NC_008686\|PILER-CR,CRISPRCasFinder,CRT	2426274-2426307	34	NZ_CP012909	Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence	196353-196386	9	0.735
NC_008686_4	4.2\|2426075\|34\|NC_008686\|PILER-CR,CRISPRCasFinder,CRT	2426075-2426108	34	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	537365-537398	11	0.676
NC_008686_4	4.5\|2426274\|34\|NC_008686\|PILER-CR,CRISPRCasFinder,CRT	2426274-2426307	34	NZ_CP026539	Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence	84865-84898	12	0.647

1. spacer 1.1|551230|20|NC_008686|CRT matches to NZ_CP043475 (Mycobacterium grossiae strain DSM 104744 plasmid pGP01, complete sequence) position: , mismatch: 1, identity: 0.95

gcaccgccgcgcaacgctgg	CRISPR spacer
acaccgccgcgcaacgctgg	Protospacer
.*******************

2. spacer 1.1|551230|20|NC_008686|CRT matches to NZ_CP043475 (Mycobacterium grossiae strain DSM 104744 plasmid pGP01, complete sequence) position: , mismatch: 1, identity: 0.95

gcaccgccgcgcaacgctgg	CRISPR spacer
acaccgccgcgcaacgctgg	Protospacer
.*******************

3. spacer 1.1|551230|20|NC_008686|CRT matches to NZ_CP032156 (Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence) position: , mismatch: 1, identity: 0.95

gcaccgccgcgcaacgctgg	CRISPR spacer
acaccgccgcgcaacgctgg	Protospacer
.*******************

4. spacer 1.7|551492|22|NC_008686|CRT matches to AY576796 (Actinoplanes phage phiAsp2, complete genome) position: , mismatch: 2, identity: 0.909

ggcggccgccggaaccgcgaga	CRISPR spacer
ggcggcggccggaaccgcgagg	Protospacer
****** **************.

5. spacer 1.7|551492|22|NC_008686|CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.864

ggcggccgccggaaccgcgaga	CRISPR spacer
ggcggccgccggaaccgcggcc	Protospacer
*******************.

6. spacer 1.8|551532|25|NC_008686|CRT matches to AP014720 (Arthrobacter sp. Hiyo8 plasmid pHiyo8-1 DNA, complete genome, strain: Hiyo8) position: , mismatch: 3, identity: 0.88

tctcgccgtatggggtggcggcatc	CRISPR spacer
actcgccgtattgggcggcggcatc	Protospacer
 ********** ***.*********

7. spacer 1.6|551449|25|NC_008686|CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 4, identity: 0.84

cttcaccgtatcggtttggcggcgc	CRISPR spacer
gatcaccgtatcggtatggtggcgc	Protospacer
  ************* ***.*****

8. spacer 1.6|551449|25|NC_008686|CRT matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

cttcaccgtatcggtttggcggcgc	CRISPR spacer
gatcaccgtatcggtgtggtggcgc	Protospacer
  ************* ***.*****

9. spacer 4.3|2426141|34|NC_008686|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010956 (Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence) position: , mismatch: 6, identity: 0.824

--aggcagcaatcgcgctggctggggcaggagtgct	CRISPR spacer
gcaggcag--gccgcgctggctgggccgggagtgct	Protospacer
  ******  ..************* *.********

10. spacer 4.5|2426274|34|NC_008686|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016593 (Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence) position: , mismatch: 9, identity: 0.735

tggggcgcgcggatcgcgcccgatggtgacacga	CRISPR spacer
accagcgcgcggatcacgcccgatggggacggca	Protospacer
   .***********.********** ***.  *

11. spacer 4.5|2426274|34|NC_008686|PILER-CR,CRISPRCasFinder,CRT matches to NC_017386 (Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

tggggcgcgcggatcgcgcccgatggtgacacga	CRISPR spacer
accagcgcgcggatcacgcccgatggggacggca	Protospacer
   .***********.********** ***.  *

12. spacer 4.5|2426274|34|NC_008686|PILER-CR,CRISPRCasFinder,CRT matches to NC_014621 (Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence) position: , mismatch: 9, identity: 0.735

tggggcgcgcggatcgcgcccgatggtgacacga	CRISPR spacer
accagcgcgcggatcacgcccgatggggacggca	Protospacer
   .***********.********** ***.  *

13. spacer 4.5|2426274|34|NC_008686|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012909 (Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

tggggcgcgcggatcgcgcccgatggtgacacga	CRISPR spacer
accagcgcgcggatcacgcccgatggggacggca	Protospacer
   .***********.********** ***.  *

14. spacer 4.2|2426075|34|NC_008686|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.676

ataggacgaaccccgcgccgccatcgggatacag	CRISPR spacer
gccggaccaaccccgcgccgccaccggcgcgggg	Protospacer
.. **** ***************.*** ... .*

15. spacer 4.5|2426274|34|NC_008686|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026539 (Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence) position: , mismatch: 12, identity: 0.647

tggggcgcgcggatcgcgcccgatggtgacacga	CRISPR spacer
atccgcccgcggatagcgcccgatggtgttgaac	Protospacer
    ** ******* ************* .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

236883 : 252819

Paracoccus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_128492969.1\|236883_237018_-	DUF4031 domain-containing protein	D4FUN1	Pseudomonas_phage	3.4e-07	86.7
WP_128492970.1\|237017_237221_-	hypothetical protein	NA	NA	NA	NA
WP_041529705.1\|237229_237436_-	hypothetical protein	NA	NA	NA	NA
WP_011746604.1\|237428_237779_-	DUF4326 domain-containing protein	A0A222ZLE2	Mycobacterium_phage	2.9e-21	47.5
WP_011746605.1\|237775_238126_-	hypothetical protein	NA	NA	NA	NA
WP_128492971.1\|238257_238515_-	hypothetical protein	NA	NA	NA	NA
WP_139171635.1\|238788_239223_-	hypothetical protein	NA	NA	NA	NA
WP_011746608.1\|239189_239984_-	DNA adenine methylase	A0A0K1LM14	Caulobacter_phage	9.6e-89	62.0
WP_011746609.1\|239980_240562_-	hypothetical protein	A0A2I2MUH3	uncultured_Caudovirales_phage	3.9e-39	35.7
WP_128493022.1\|240558_240924_-	hypothetical protein	A0A1B0V7P0	Salmonella_phage	2.9e-16	36.5
WP_011746611.1\|242419_242716_+	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	6.7e-11	38.0
WP_011746612.1\|242715_243093_+	transcriptional regulator	A0A222YXG1	Escherichia_phage	2.5e-23	44.4
WP_041529709.1\|243436_243670_-	hypothetical protein	NA	NA	NA	NA
WP_011746614.1\|243956_244910_-	DUF3380 domain-containing protein	D2JTA3	Pseudomonas_phage	5.3e-17	37.2
WP_011746615.1\|244979_245237_-	hypothetical protein	NA	NA	NA	NA
WP_011746616.1\|245263_245617_-	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	2.7e-27	51.7
WP_011746617.1\|245624_249644_-	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	1.2e-243	40.0
WP_011746618.1\|249648_250086_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	1.8e-28	42.2
WP_011746619.1\|250082_250967_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	2.7e-68	46.0
WP_011746620.1\|250963_251590_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	4.6e-62	58.3
WP_157137420.1\|251589_252819_-	hypothetical protein	Q6UYJ3	Burkholderia_phage	6.2e-10	35.9

DBSCAN-SWA_2

318370 : 349151

Rhizobium_phage(21.05%)

protease,tail,terminase,integrase,head,capsid,portal

attL 317837:317858|attR 350241:350262

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
317837:317858	attL	NA	NA	NA	NA
WP_011746682.1\|318370_319441_-\|integrase	site-specific integrase	A0A067XRF8	Caulobacter_phage	1.5e-15	29.1
WP_041529722.1\|319639_319948_-	hypothetical protein	NA	NA	NA	NA
WP_011746684.1\|319991_320720_-	hypothetical protein	A0A0U2BXK1	Paracoccus_phage	2.9e-76	59.5
WP_011746685.1\|320716_321160_-	hypothetical protein	NA	NA	NA	NA
WP_041529723.1\|321149_321356_-	hypothetical protein	NA	NA	NA	NA
WP_011746686.1\|321355_322261_-	hypothetical protein	R9TN97	Rhizobium_phage	1.9e-24	78.6
WP_011746687.1\|322257_322677_-	hypothetical protein	NA	NA	NA	NA
WP_011746688.1\|322673_325319_-	DNA methylase N-4	R9TRS8	Rhizobium_phage	0.0e+00	60.6
WP_011746689.1\|325322_326441_-	DNA polymerase III subunit beta	A0A0A8IL17	Aurantimonas_phage	5.2e-32	32.2
WP_011746690.1\|326576_326789_-	hypothetical protein	NA	NA	NA	NA
WP_041529724.1\|326788_326989_-	hypothetical protein	NA	NA	NA	NA
WP_139171663.1\|326988_327180_-	hypothetical protein	NA	NA	NA	NA
WP_074988200.1\|327455_327941_-	hypothetical protein	NA	NA	NA	NA
WP_128492974.1\|328237_328573_+	hypothetical protein	NA	NA	NA	NA
WP_011746693.1\|328572_329100_+	hypothetical protein	NA	NA	NA	NA
WP_041529728.1\|329083_329332_-	hypothetical protein	NA	NA	NA	NA
WP_011746695.1\|329664_329997_+	hypothetical protein	NA	NA	NA	NA
WP_128493023.1\|330028_330304_+	hypothetical protein	NA	NA	NA	NA
WP_011746697.1\|330300_330513_+	hypothetical protein	NA	NA	NA	NA
WP_011746698.1\|330674_331004_-	hypothetical protein	NA	NA	NA	NA
WP_011746699.1\|331124_332267_+	hypothetical protein	I3UM61	Rhodobacter_phage	2.5e-98	54.4
WP_011746700.1\|332259_334101_+	P4 family phage/plasmid primase	G8DGC0	Emiliania_huxleyi_virus	2.5e-148	49.3
WP_011746702.1\|334559_335318_+	hypothetical protein	I3ULZ3	Rhodobacter_phage	7.0e-12	30.9
WP_011746703.1\|335487_335838_+	HNH endonuclease	I3ULZ4	Rhodobacter_phage	1.0e-26	56.7
WP_011746704.1\|335887_336148_+	hypothetical protein	NA	NA	NA	NA
WP_011746705.1\|336321_336825_+	resolvase	I3ULZ5	Rhodobacter_phage	6.4e-30	48.4
WP_011746706.1\|336814_338536_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	9.6e-118	42.3
WP_011746707.1\|338535_339873_+\|portal	phage portal protein	M4QP41	Tetraselmis_viridis_virus	5.2e-79	40.2
WP_011746708.1\|339859_340702_+\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	7.9e-73	54.0
WP_011746709.1\|340713_342063_+\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	1.3e-74	47.4
WP_011746710.1\|342120_342429_+	hypothetical protein	NA	NA	NA	NA
WP_074810761.1\|342353_342965_+	hypothetical protein	M4QNT5	Tetraselmis_viridis_virus	1.4e-26	58.1
WP_041529730.1\|342924_343482_+	hypothetical protein	NA	NA	NA	NA
WP_011746713.1\|343475_343835_+\|head,tail	head-tail adaptor protein	B4UTP9	Rhizobium_phage	1.1e-07	35.8
WP_041529731.1\|343831_344218_+	DUF3168 domain-containing protein	A0A141GEW7	Brucella_phage	7.6e-15	43.0
WP_128492975.1\|344214_344571_-	hypothetical protein	NA	NA	NA	NA
WP_074810758.1\|344595_345042_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_041529733.1\|345034_345232_+	hypothetical protein	NA	NA	NA	NA
WP_011746717.1\|345233_345695_+	hypothetical protein	NA	NA	NA	NA
WP_011746718.1\|345694_346084_+	hypothetical protein	B4UTQ4	Rhizobium_phage	5.7e-18	45.5
WP_157137422.1\|346092_346245_+	hypothetical protein	NA	NA	NA	NA
WP_011746719.1\|346244_349151_+	hypothetical protein	A0A1V1FCQ8	Vibrio_phage	9.8e-14	56.9
350241:350262	attR	NA	NA	NA	NA

DBSCAN-SWA_3

940531 : 984568

Rhodobacter_phage(34.78%)

protease,terminase,integrase,tRNA,portal,capsid,transposase

attL 943367:943384|attR 965781:965798

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011747294.1\|940531_942478_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.7e-118	36.5
WP_011747295.1\|942648_943398_+	alpha/beta hydrolase	NA	NA	NA	NA
943367:943384	attL	NA	NA	NA	NA
WP_011747296.1\|943440_944784_-	polyhydroxyalkanoate depolymerase	NA	NA	NA	NA
WP_081465055.1\|945353_947219_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
WP_011747298.1\|947332_947806_+	hypothetical protein	NA	NA	NA	NA
WP_011747299.1\|947954_948542_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA
WP_128493029.1\|948708_949782_-\|integrase	tyrosine-type recombinase/integrase	I3UM24	Rhodobacter_phage	7.4e-76	46.6
WP_041529790.1\|949784_950015_-	helix-turn-helix domain-containing protein	I3UM25	Rhodobacter_phage	3.2e-21	64.9
WP_011747302.1\|950014_950743_-	hypothetical protein	A0A0U2BXK1	Paracoccus_phage	7.0e-78	60.8
WP_011747303.1\|950739_951180_-	hypothetical protein	NA	NA	NA	NA
WP_011747304.1\|951169_951442_-	hypothetical protein	A0A0K1Y6J3	Rhodobacter_phage	8.6e-05	65.5
WP_011747305.1\|951441_952170_-	hypothetical protein	NA	NA	NA	NA
WP_011747306.1\|952166_952967_-	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	2.6e-25	57.1
WP_011747307.1\|952963_953392_-	hypothetical protein	A0A097PBD6	Delftia_phage	1.6e-37	60.3
WP_011747308.1\|953391_956043_-	DNA methylase N-4	R9TRS8	Rhizobium_phage	0.0e+00	60.9
WP_011747309.1\|956046_957165_-	DNA polymerase III subunit beta	A0A0A8IL17	Aurantimonas_phage	3.1e-32	32.4
WP_011747310.1\|957301_957514_-	hypothetical protein	NA	NA	NA	NA
WP_011747311.1\|957513_957774_-	hypothetical protein	NA	NA	NA	NA
WP_041529791.1\|957770_957962_-	hypothetical protein	NA	NA	NA	NA
WP_074810797.1\|958087_958315_+	hypothetical protein	NA	NA	NA	NA
WP_011747313.1\|958304_958832_-	hypothetical protein	NA	NA	NA	NA
WP_011747314.1\|959003_959615_-	LexA family transcriptional regulator	NA	NA	NA	NA
WP_041529793.1\|959726_959993_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041529794.1\|960024_960303_+	hypothetical protein	NA	NA	NA	NA
WP_041529795.1\|960622_960904_-	hypothetical protein	NA	NA	NA	NA
WP_128492985.1\|961050_961365_+	hypothetical protein	NA	NA	NA	NA
WP_011747319.1\|961361_961556_+	hypothetical protein	NA	NA	NA	NA
WP_011747320.1\|961552_962695_+	hypothetical protein	I3UM61	Rhodobacter_phage	9.9e-103	54.4
WP_011747321.1\|962687_962936_+	hypothetical protein	NA	NA	NA	NA
WP_011747322.1\|962932_964771_+	P4 family phage/plasmid primase	H6WBR7	Rhodobacter_phage	1.9e-143	49.9
WP_011747323.1\|965146_965905_+	hypothetical protein	I3ULZ3	Rhodobacter_phage	7.0e-12	32.3
965781:965798	attR	NA	NA	NA	NA
WP_011746703.1\|966074_966425_+	HNH endonuclease	I3ULZ4	Rhodobacter_phage	1.0e-26	56.7
WP_128492986.1\|966417_966735_+	hypothetical protein	NA	NA	NA	NA
WP_011746705.1\|966909_967413_+	resolvase	I3ULZ5	Rhodobacter_phage	6.4e-30	48.4
WP_011747325.1\|967402_969124_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	6.7e-119	42.5
WP_011747326.1\|969123_970461_+\|portal	phage portal protein	M4QP41	Tetraselmis_viridis_virus	6.8e-79	40.2
WP_011746708.1\|970447_971290_+\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	7.9e-73	54.0
WP_011746709.1\|971301_972651_+\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	1.3e-74	47.4
WP_011746710.1\|972708_973017_+	hypothetical protein	NA	NA	NA	NA
WP_074810761.1\|972941_973553_+	hypothetical protein	M4QNT5	Tetraselmis_viridis_virus	1.4e-26	58.1
WP_041529730.1\|973512_974070_+	hypothetical protein	NA	NA	NA	NA
WP_011747327.1\|974063_974414_+	hypothetical protein	NA	NA	NA	NA
WP_011747328.1\|974410_974818_+	DUF3168 domain-containing protein	A0A141GEW7	Brucella_phage	2.9e-12	31.6
WP_041529799.1\|974980_975460_+	HK97 gp10 family phage protein	B4UTQ0	Rhizobium_phage	2.8e-14	36.2
WP_049792299.1\|975565_975982_+	hypothetical protein	NA	NA	NA	NA
WP_011747331.1\|975981_976437_+	gene transfer agent family protein	A0A141GEX0	Brucella_phage	1.4e-15	42.9
WP_157137426.1\|976433_976586_+	hypothetical protein	NA	NA	NA	NA
WP_011747332.1\|976762_979738_+	tape measure protein	A0A2D0W9N5	Bordetella_phage	9.6e-49	41.0
WP_011747333.1\|979737_980418_+	hypothetical protein	NA	NA	NA	NA
WP_011747334.1\|980414_980981_+	hypothetical protein	NA	NA	NA	NA
WP_011747335.1\|980965_981337_+	hypothetical protein	NA	NA	NA	NA
WP_011747336.1\|981336_983379_+	hypothetical protein	NA	NA	NA	NA
WP_011747337.1\|983442_983823_+	hypothetical protein	NA	NA	NA	NA
WP_086000139.1\|983810_984568_-\|transposase	IS5-like element IS1248A family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2067434 : 2073746

Aeropyrum_pernix_spindle-shaped_virus(12.5%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041529933.1\|2067434_2069102_-	DNA cytosine methyltransferase	G3CB01	Aeropyrum_pernix_spindle-shaped_virus	7.6e-19	28.1
WP_011748349.1\|2069037_2069502_+	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	1.5e-36	49.7
WP_011748350.1\|2069677_2070169_-\|terminase	phage terminase large subunit	A0A0U2C138	Paracoccus_phage	3.7e-30	48.7
WP_011748351.1\|2070152_2070623_-\|terminase	phage terminase small subunit P27 family	A0A1B0RXI5	Streptococcus_phage	8.4e-16	33.6
WP_011748352.1\|2070829_2071036_+	cold-shock protein	Q9AZD3	Lactococcus_phage	1.2e-11	56.9
WP_049792365.1\|2071145_2071421_+	DUF982 domain-containing protein	NA	NA	NA	NA
WP_157137435.1\|2071519_2071678_+	hypothetical protein	NA	NA	NA	NA
WP_011748354.1\|2071690_2071915_-	hypothetical protein	K4I1E3	Acidithiobacillus_phage	1.2e-17	66.7
WP_049792366.1\|2071911_2073273_-	site-specific DNA-methyltransferase	A0A0A8ILE7	Aurantimonas_phage	1.2e-78	41.3
WP_018000081.1\|2073401_2073746_-	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	2.1e-24	65.8

DBSCAN-SWA_5

2138070 : 2144900

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011748423.1\|2138070_2138661_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	8.0e-56	54.5
WP_011748424.1\|2138657_2139695_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.0e-58	41.0
WP_011748425.1\|2139687_2140356_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	4.2e-37	49.2
WP_011748426.1\|2140365_2141157_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	3.2e-60	52.1
WP_011748427.1\|2141153_2141627_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_011748428.1\|2141637_2142810_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_011748429.1\|2142919_2143618_+	transcriptional repressor LexA	E5DV74	Deep-sea_thermophilic_phage	6.8e-14	35.6
WP_011748430.1\|2143742_2144900_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.3e-46	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_008687

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

49989 : 64313

Paracoccus_phage(27.27%)

protease,portal,head,capsid,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011749160.1\|49989_50712_-	DUF2793 domain-containing protein	A0A1V0DY81	Dinoroseobacter_phage	6.8e-25	33.1
WP_011749161.1\|50704_54595_-	phage host specificity protein	A0A0K1LL82	Rhodobacter_phage	1.2e-211	38.0
WP_011749162.1\|54613_55039_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	7.3e-35	53.7
WP_011749163.1\|55035_55854_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	8.8e-45	40.6
WP_041530318.1\|55850_56483_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	4.0e-53	47.4
WP_011749165.1\|56484_57156_-\|tail	phage tail tape measure protein	C0LP53	Escherichia_virus	9.8e-10	41.5
WP_011749166.1\|57180_57393_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_011749167.1\|57389_57707_-	gene transfer agent family protein	NA	NA	NA	NA
WP_011749168.1\|57708_58122_-\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	1.3e-15	36.6
WP_011749169.1\|58134_58554_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_011749170.1\|58550_58901_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_011749171.1\|58897_59515_-	hypothetical protein	NA	NA	NA	NA
WP_011749172.1\|59643_60810_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	2.8e-60	36.7
WP_011749173.1\|60833_61391_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.1e-33	50.9
WP_011749174.1\|61371_61605_-	hypothetical protein	NA	NA	NA	NA
WP_011749175.1\|61606_62809_-\|portal	phage portal protein	A0A0K1LLE7	Bacillus_phage	7.5e-61	37.4
WP_086000162.1\|62957_64313_-	DNA-packaging protein	A0A0K1LMR9	Caulobacter_phage	1.8e-71	40.2

DBSCAN-SWA_2

797815 : 805977

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011749885.1\|797815_799594_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.1e-39	39.7
WP_011749886.1\|799653_799950_-	DUF2218 domain-containing protein	NA	NA	NA	NA
WP_011749887.1\|800144_800831_-	aquaporin Z	A0A1B1ISL4	uncultured_Mediterranean_phage	4.0e-06	55.2
WP_011749888.1\|800978_802793_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.9e-32	25.3
WP_041530380.1\|802983_803190_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.6e-11	51.6
WP_041530381.1\|803246_803456_+	hypothetical protein	NA	NA	NA	NA
WP_157137453.1\|803617_803767_+	hypothetical protein	NA	NA	NA	NA
WP_011749890.1\|804011_805649_-	chaperonin GroEL	A0A240F779	uncultured_virus	1.2e-173	61.0
WP_019353022.1\|805689_805977_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	2.2e-19	53.3

DBSCAN-SWA_3

885406 : 892533

Azospirillum_phage(14.29%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041530394.1\|885406_885793_-	helix-turn-helix transcriptional regulator	B0VK04	Azospirillum_phage	6.7e-11	35.8
WP_041530395.1\|885878_886097_+	hypothetical protein	NA	NA	NA	NA
WP_011749983.1\|886093_886435_+	hypothetical protein	NA	NA	NA	NA
WP_011749984.1\|886552_886882_+	hypothetical protein	NA	NA	NA	NA
WP_011749985.1\|886881_887592_+	hypothetical protein	A0A291AUT5	Sinorhizobium_phage	7.1e-67	58.1
WP_041530397.1\|887588_887801_+	hypothetical protein	A0A1X9HWB0	Ruegeria_phage	7.1e-07	50.0
WP_041530398.1\|887802_888087_+	hypothetical protein	NA	NA	NA	NA
WP_128493056.1\|888155_888629_+	hypothetical protein	A0A218MLE3	uncultured_virus	7.4e-20	37.6
WP_128493057.1\|888637_888994_+	hypothetical protein	NA	NA	NA	NA
WP_074988172.1\|888993_889752_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.8e-13	38.5
WP_041530399.1\|889729_890374_+	hypothetical protein	NA	NA	NA	NA
WP_011749989.1\|890379_890703_+	hypothetical protein	NA	NA	NA	NA
WP_011749990.1\|890705_891107_+	hypothetical protein	Q716H4	Shigella_phage	1.7e-17	38.5
WP_011749991.1\|891207_892533_+\|terminase	PBSX family phage terminase large subunit	K4NWT7	Pseudomonas_phage	1.7e-34	36.1

DBSCAN-SWA_4

896329 : 907511

Salmonella_phage(28.57%)

head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011749994.1\|896329_898006_+\|head,tail	head-tail connector protein	T1S9Z7	Salmonella_phage	9.1e-97	36.8
WP_011749995.1\|898002_898332_+	hypothetical protein	NA	NA	NA	NA
WP_011749996.1\|898324_898981_+	hypothetical protein	W6MWW5	Pseudomonas_phage	6.9e-16	41.4
WP_011749997.1\|898984_900016_+	hypothetical protein	Q775C7	Bordetella_phage	3.7e-72	42.7
WP_011749998.1\|900073_900502_+	hypothetical protein	T1SA71	Salmonella_phage	6.0e-21	50.0
WP_041530401.1\|900509_900818_+	hypothetical protein	NA	NA	NA	NA
WP_011750000.1\|900875_901178_+	hypothetical protein	W8VYP4	Pseudomonas_phage	5.0e-30	67.0
WP_011750001.1\|901228_901837_+	hypothetical protein	NA	NA	NA	NA
WP_011750002.1\|901836_903876_+	hypothetical protein	Q775D1	Bordetella_phage	1.9e-128	38.3
WP_011750003.1\|903877_904345_+	hypothetical protein	NA	NA	NA	NA
WP_011750004.1\|904344_904896_+	hypothetical protein	NA	NA	NA	NA
WP_011750005.1\|904895_907511_+	lytic transglycosylase domain-containing protein	A0A0K2QJE7	Achromobacter_phage	1.4e-19	32.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008688

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_008686

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_008687

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection