CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_008577	Shewanella sp. ANA-3 chromosome 1, complete sequence	2 crisprs	cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f	0	5	4	0
NC_008573	Shewanella sp. ANA-3 plasmid unnamed1, complete sequence	1 crisprs	cas14j	0	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_008577_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008577_1

692920-693022

Orphan

Consensus_repeat	Method
AATTATGCGACATTAGCTCAGTTG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_008577_1

>merge|NC_008577|1|692920-693022|CRISPRCasFinder
AATTATGCGACATTAGCTCAGTTGATAAAGGTTGATAGACGATACCTTTGTGAATGTTGAAAGCGGATGTAACAGCGATAATTATGCGACATTAGCTCAGTTG

>NC_008577|1|1|692920-693022|CRISPRCasFinder
AATTATGCGACATTAGCTCAGTTG	ATAAAGGTTGATAGACGATACCTTTGTGAATGTTGAAAGCGGATGTAACAGCGAT
AATTATGCGACATTAGCTCAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008577.1\|WP_011621386.1\|684629_684965_+\|DUF3392-domain-containing-protein	unknown	unknown	gnl\|CDD\|378746
NC_008577.1\|WP_011715780.1\|685726_688930_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|236798
NC_008577.1\|WP_011715791.1\|703660_704554_+\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|182913
NC_008577.1\|WP_011715779.1\|684988_685711_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176499
NC_008577.1\|WP_011715781.1\|688998_689883_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_008577.1\|WP_011715782.1\|689897_690776_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|234591
NC_008577.1\|WP_011621393.1\|693762_694218_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153104
NC_008577.1\|WP_011070934.1\|700871_701144_+\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NC_008577.1\|WP_011715786.1\|696508_697900_+\|AMIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|236692
NC_008577.1\|WP_011715783.1\|690856_691921_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NC_008577.1\|WP_011715784.1\|692033_692579_+\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NC_008577.1\|WP_011715777.1\|681887_683462_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NC_008577.1\|WP_041412536.1\|699852_700779_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_008577.1\|WP_011715789.1\|701167_702475_+\|GTPase-HflX	unknown	unknown	gnl\|CDD\|182934
NC_008577.1\|WP_011715790.1\|702511_703657_+\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|236799
NC_008577.1\|WP_011715785.1\|694462_695962_+\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|182554
NC_008577.1\|WP_011715778.1\|683606_684539_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240625
NC_008577.1\|WP_011715787.1\|697913_699860_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NC_008577.1\|WP_011621395.1\|696041_696500_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|182615
NC_008577.1\|WP_011715776.1\|681447_681639_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|381078

Protein	Function_ID	Function_description	E-value
NC_008577.1\|WP_011621386.1\|684629_684965_+\|DUF3392-domain-containing-protein	gnl\|CDD\|378746	pfam11872, DUF3392, Protein of unknown function (DUF3392). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	5.57316e-39
NC_008577.1\|WP_011715780.1\|685726_688930_-\|mechanosensitive-ion-channel	gnl\|CDD\|236798	PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional.	0
NC_008577.1\|WP_011715791.1\|703660_704554_+\|protease-modulator-HflC	gnl\|CDD\|182913	PRK11029, PRK11029, protease modulator HflC.	3.86373e-128
NC_008577.1\|WP_011715779.1\|684988_685711_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176499	cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases.	3.83294e-55
NC_008577.1\|WP_011715781.1\|688998_689883_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.29247e-15
NC_008577.1\|WP_011715782.1\|689897_690776_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	0
NC_008577.1\|WP_011621393.1\|693762_694218_+\|hypothetical-protein	gnl\|CDD\|153104	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.	0.00222396
NC_008577.1\|WP_011070934.1\|700871_701144_+\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	3.18696e-46
NC_008577.1\|WP_011715786.1\|696508_697900_+\|AMIN-domain-containing-protein	gnl\|CDD\|236692	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional.	1.8921e-97
NC_008577.1\|WP_011715783.1\|690856_691921_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NC_008577.1\|WP_011715784.1\|692033_692579_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	3.7664e-132
NC_008577.1\|WP_011715777.1\|681887_683462_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	4.47456e-65
NC_008577.1\|WP_041412536.1\|699852_700779_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.69879e-174
NC_008577.1\|WP_011715789.1\|701167_702475_+\|GTPase-HflX	gnl\|CDD\|182934	PRK11058, PRK11058, GTPase HflX; Provisional.	0
NC_008577.1\|WP_011715790.1\|702511_703657_+\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|236799	PRK10930, PRK10930, FtsH protease activity modulator HflK.	2.0625e-155
NC_008577.1\|WP_011715785.1\|694462_695962_+\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	5.02677e-163
NC_008577.1\|WP_011715778.1\|683606_684539_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240625	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.	4.14581e-125
NC_008577.1\|WP_011715787.1\|697913_699860_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NC_008577.1\|WP_011621395.1\|696041_696500_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|182615	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE.	1.0083e-73
NC_008577.1\|WP_011715776.1\|681447_681639_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|381078	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain. This family includes Escherichia coli and Pseudomonas aeruginosa bacterioferritin-associated ferredoxin BFD which binds an [2Fe-2S] cluster and appears to interact with bacterioferritin (E. coli BFR/YheA and P. aeruginosa BfrB), a dynamic regulator of intracellular iron levels. It has been suggested that BFD and bacterioferritin form an electron transfer complex which may participate in the iron storage or iron immobilization functions of bacterioferritin. For Pseudomonas aeruginosa, it has been shown that mobilization of Fe3+ stored in BfrB requires interaction with BFD, which transfers electrons to reduce Fe3+ in the internal cavity of BfrB for subsequent release of Fe2+. The stability of BFD may be aided by an anion-binding site found within this domain. In addition to BFD, the BFD-like [2Fe-2S]-binding domain is found in a variety of proteins such as the large subunit of NADH-dependent nitrite reductase and the Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.	1.5724e-24

>NC_008577.1|WP_011715784.1|692033_692579_+|oligoribonuclease
MAADANNLIWIDLEMTGLEPDVDRVIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQMNEAQAVAQTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRWSPETMAGFKKQNTHQALQDIQESIAELQYYRSKVFKI
>NC_008577.1|WP_011715783.1|690856_691921_-|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MSKKKPLSQGQLRRMRANHEKRLNRDNGDKNAPELQDSSLGPEQSGTVISRFGQHADIETEDGQIVRCNIRRTIKSLVTGDKVIVRLAIETQANSGIAGIVEAVHPRRSSLSRPDLYDGVKIIASNIDQILIVSSVLPSFTTQIIDRYLVAAEDTDIPPIIILNKIDLLTPEEAPAIEAALKRYEAIGYPVYKVSSKLGEGLDTIKALLKDKVSVFAGQSGVGKSSLVNALLPEAELLVGDVSDNSGLGQHTTTTAKLLHLPSGGDLIDSPGVREFALWHLPAQRVGWCFIEFRDFLGGCKFRDCKHGDDPGCALKAAVDAGKISEDRFNNYHRIIASLDEQRHARHFRAQSDE
>NC_008577.1|WP_011715782.1|689897_690776_-|phosphatidylserine-decarboxylase
MDKVKIALQYMLPKHLLSRLVGKLAASEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYKSFNDFFTRALKPGIRPINTATNIMVHPVDGAVSQLGPIKDGRIFQAKGHHYSSLTLLGDQAEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTARHVPGLFARNERVVAIFETELGPLAMVLVGATIVASIETVWAGTITPPTGKQVFTWEYPTVGPDAITLDKGEEMGRFKLGSTVVMLFAKDAIDTFAEGVEPEAVTRMGQAFANLKNQASAD
>NC_008577.1|WP_011715781.1|688998_689883_-|DMT-family-transporter
MSQTAKPSGLIELHLAVLMFGGTALFSKLIPLSALDITFLRCVVAALVLALLIKFRGKYISLASKQDYLVAIGLGVIVSLHWVTYFAAMQLSSVAIGMIAFFTYPVMTVIAEPLLTGNKIKLMDIISGVLVLIGVVLLIPEANLGNDTTLGIAVGIVSAMLFTARNLLQKRYFSQYSGPHAMFYQTLVAAVFLMPWHQTELQTISLETWGLIILLGVVFTAAPHALFTSALRQLSAKTVGLVSCLQPFYGAMLALVILGEALNLNTLIGGTIIVATAIFETHQSHQSQRRKKNA
>NC_008577.1|WP_011715780.1|685726_688930_-|mechanosensitive-ion-channel
MPRILLFVIAFLSFSLHANSPLQLDKRLGLNNQNQQQNISIDDQIVELKNNIDRLAANANSFQQAQLDFEENKKVIDHGLKEAAKPLKLDKATDLNQQASMAYLRLSELKESETALGNQVSELLQRHNLLPSVIANARQNVLQNKKTELAPLDTPAGELQQTQRVFFEQSLATNEAELASSQKRIELTQLQLQLVRQQLSQQEAFIETINKAMNKQRQQQTDATLAKNLVDTAKVVDPVTRNIADTNQIYGQKLQTLTLQINNVVEQQEQAELQYQSQAKQLANIQEQITWVKMNSAFGERFLQMLQSLPKPPNHEKLQTLIADARLDRYHLEQQQALNEQELEQTNLYNEGQIKLLRSQQALLTQLMQSYDQYLSELGKLKVNYQQLSQQHLTLKNTLNEHLFWVPNAASINKLWLTDLQRSALWLVQEAQWGQLGKAWQEQNDYWSWWIILLVLCLVIQDLIRPKFKRLLTHYVTYVGNVTQDKFIYTFKSLVLSLGYALIKPLPIVAAGWIFYQSERNFVQAVGMGILAIGLVYLLYRLIFILALDKGVLVGHFKRPSKLIQAGQLRLKHFVFVASPLLGIMGFTEVLDASLIRNSIGRGAFICFCVVLFLLYKDILVLSRQNSDTQKDGKNKRLIQKMLWALLISVPLLSAVLAFRGYYFTAFQMLLQLQLSIVLGLSFLLLYQLIKRWMLIERRRIAFDRAKAKRAERLAQREKGETHHVSSDGLDTYEEPVVDLETISSQSLGLVRSLLLLAFLASLIGLWTQTHTALFSFLDGITLWTTNTSVNGVEQQLPITMKSLLLGLVIVGFSLMIATNLPGLLELMILQRLDLTPGTGFAITTVSRYLVVFLGLLIGFSNLGMEWSKLQWLIAALSLGLGFGLQEIFANFISGLIILFEKPVRIGDTVTIRDLTGTVSKIQIRATTIIDWDRKEIIIPNKAFITEQLINWSLSDPITRVIVHVSVARDSDPAKVEATLYQAVQECEDALPNPEPEVWFAGFGKHTQDYEVRAYAKEMSARWPLRHDLHKRITRKLKENNLELAYPQMEIHLKNGQTRDQVGIIRS
>NC_008577.1|WP_011715779.1|684988_685711_-|glycerophosphodiester-phosphodiesterase
MLIFAHRGASGYVAENTLAAMAKAIELGATAIELDVHNVEGELVVFHDRRLDSKSSGQGIIHLVNKGYLDTVTVKGEPIPTLWQVLELVAGRATINIELKGVNTVAPLLTLYPKAITELGFSAEQLLISSFNHPYLQQVKQALPQALVAPLLASIPLDGAAVVSELNAYSLHLDVSFISKALVDDAHHRGAKVYVYTVDYSDDIHALQQLGVDGIFSNFPDRAMQALLQPTNTDYSGYFE
>NC_008577.1|WP_011621386.1|684629_684965_+|DUF3392-domain-containing-protein
MFDQLVAIIGHLGNMLRPWSFDIATAMVVCLILVFSADVNRILRRHLLGHSFILRTFVFIIVNAFGYGLLIVKATPWVARQIVAMPSHWMFLLIVAMFIFIGYWAQRNSQA
>NC_008577.1|WP_011715778.1|683606_684539_-|D-2-hydroxyacid-dehydrogenase
MGHKLLLLTKANEQYRQLIEAQQLPGLELLDDNPANIAEANIWLAEPKLAAPLVPHAKQLKWLQSSFAGIDALMGPRARKDYQLTNIKGIFGPLMSEYLFGYLLAHVRGHQFYQAQQRQKSWQVQSATRGSLQGMRLLLLGTGSIAQHVAKTAKHFGMHITGINRSGREVDGFDLIQPLSQLGQCLSQSDVVTNLLPSTPETRLLLNADMLATLKADAILVNVGRGDVLDLDALNTQLIARPEQHAVLDVFTQEPLPASHPIWERPNAIITPHISAPSHPEQIVRIFSDNYRRYIAAEPLQNQVDFIQGY
>NC_008577.1|WP_011715777.1|681887_683462_+|methyl-accepting-chemotaxis-protein
MRKNLPVTQREYDYPADWILLSTTDTKSHITYANPSFCTVAGYELSGMLGLPHNMVRHPDMPPQAFEDLWKTIRKGEPWKGIVKNRCANGDHYWVDAYVSPIVVNGQVAEFQSVRTKPSREQINRAEAAYAELNKNGQVKALKRTLEMPTKLALLVLVALLPMLYLALQIGVVGFVGLAISALALFIGGNLILGRYRTLVAKAKKIYDNPLMAHIYTGQSDDLGAIDLALQMQNSELKSVLGRARDSCDNVSQQAKISAAKGEEIQGTSQSQLAEIEQVATAMQQMTATLGDMSSNCADAASASQMASLQTINGDKTVVSTIQSIQAMAQQLQETSQVITELEGHSRDIGRVLDVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAQRTHDATKEIHTMINLLQQGTHKAVRSMQEGVDAAGECITTADLAGAALRTIREAITTITDMTHHIASAVEEQSSVANEMNRSVVNVSQFTHSSHQLGCEMVSLNDEVIGEMNSHTVLVGQFLKRSFKV
>NC_008577.1|WP_011715776.1|681447_681639_-|(2Fe-2S)-binding-protein
MYVCLCHAITDTQIKNAVSQGDSSLADVKKRLGVADQCGKCARMAVQIIQNQLEIEPNYYEVA
>NC_008577.1|WP_011621393.1|693762_694218_+|hypothetical-protein
MRIQQLRDLLEYVANCRLDMAQLYGRLNNQADSARVKMMLEYFESHQKHVAEKLRDYMDEAPVRVLDTWYKDFVFEDFTKRCQDTMLPANMTEDDVLNLHLDLENRLIGLLEKTVNSTTAEDARTALEGLIRVEKTQQQRLVHSTIRMDDI
>NC_008577.1|WP_011715785.1|694462_695962_+|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MAQDLSSLPTALYTQQQVRAAELLAVSEGETTLYQLVERAGRAAFECFTQQRERHPQLEGMPLLVLAGSGNNGADALVCARLALEAGHQVKVYLLKTQGTAEFEHALSAYLNQGGVIDSPNIEAIQQAPVIIDGLLGTGVKGAVREDIAALIHAVNQSEAWVLSLDLPSGIVADTGVALYVAVMADVTLCFGGLKQGLLTSKARHHCGHLTFADLGLTPFFDAENATRVGGEMLKSHFAARARDSHKGQSGKVTLIGGDFGMAGAIRLASEACLRAGAGLVTVISRPEHQLTVNVSRPELMFWGCELVDMEVYLRLGWAQVVVLGPGLGKHDWGYNLFKAAGLSDKPCVLDADALNLLSQEPRRQTNWVLTPHPGEAARLLGCSVADIEQDRFAAVRALQQKYGGVVLLKGAGTVIFDGKQMVVAPVGNPGLASGGCGDVLSGIIGALMAQGMDNMQATVVGVVVHGCAADLAAVQGERGMLASDLMPFIRQLVNSDLL
>NC_008577.1|WP_011621395.1|696041_696500_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MTELTFQLNNEDETIAVGQKLARHIQAPLTLYLTGDLGAGKTTLSRGLIQGLGHKGAVKSPTYTLVEPYELDGVEVYHFDLYRLNDPEELEFMGIRDYFTDSSLCIVEWPDKGHGLLPDADIHLHLNYVNQGREIQIRALTESGKKLLAAIK
>NC_008577.1|WP_011715786.1|696508_697900_+|AMIN-domain-containing-protein
MTKNKHYFQTITLFLCAFFAVAAHAANQLEGVRIWAAPESTRVVFDLSEAPNYTYFSLDGPNRLVVDLKKASTKLSLKNIDNNSKLVKGVRVSKSPTKGDLRLVIDLVKPLNANLFSLPETAPYGNRLVVDLEDKTLTTATAVVSSTPVKTVTQSAQSSRDIVVAIDAGHGGDDPGSIGPSGVYEKKVALEIAKRVASKINDTPGMRAVMIRTGDYFVNLNKRSELARNSKADLLISIHADAFTSPQPKGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNTDNEQYLAMTLLDMSMNSSMAIGHSVAGDILKDLGSVTELHKSRPESASLAVLKSPDIPSILVETGFISNPKEERLLNSSRHQESIATAIYKGVSRYFHNNPPADTLLAKRNSGGTTASSSAKSSSGNIKHKVSRGESLSAIAQRYQVPMASIKRANGMKTDVVQLGQTLVIPES
>NC_008577.1|WP_011715787.1|697913_699860_+|DNA-mismatch-repair-endonuclease-MutL
MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNGSGIPKDELALALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEAWQAYAEGADMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKIVRNCRPAMNEPQYLQRLTQVAGRQFADEALRVECQHDDLRLSGYLQSPWSTVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQKAEVEQPGYVLMLDIDPHQVDVNVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELGFERPFEPSSPQIRDEASLSETGAQTQTEHHAFELQSPESKTHSTWNEASRVDTSRAETSRESRIDSPLGERTRDIASARPYAGVQSNAYGSMAVPRESRSGSAGESRARAELPSKVAIASYGELLQTPSYSVQDKPYQPVLAMPAILNGQYWVLAQGQNLSLLPIQSVALATRSHEVETKLATGLIGQPLLMPVSIAADTDWPALLEEHETLIRQLGLELTIRYQQLIIKKVPPYLRDSQLAKVIPEWLQSLRFEAPAPNALAVWLAEQSLTGFTSAADIWAAYCQLTEEKRQQIADKAVSLPWQSWLEEQASE
>NC_008577.1|WP_041412536.1|699852_700779_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MNKELQPKVVFLMGPTASGKTALALELAEKHNCEIISVDSALIYRGMDIGSAKPSAEELARGPHRLIDIRDPAESYSAADFRADALREIEQIISMGKTPVLVGGTMMYFKALLEGLSPLPSADEAIRAEIQAEADANGWEALHEQLREIDPVSAERIHPNDPQRLSRAIEVYRISGKSLTELTQTKSAPLPYDVVQFAIAPRERKVLHELIGQRFRIMLEQGFIDEVAQLKARGDLHLDLPSMRCVGYRQCWQYLDGEFDYDTMVEKAVAATRQLAKRQLTWLRSWPELNWLESGAEGNLVTLMRQCR
>NC_008577.1|WP_011070934.1|700871_701144_+|RNA-chaperone-Hfq
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAISTVVPARPFNVAGHQNAQGGYGAQDDMPSGE
>NC_008577.1|WP_011715789.1|701167_702475_+|GTPase-HflX
MFDRYEAGETAVLVHIDFSDEERREDLVELQLLVESAGARSVGVITGSRRSPDRKFFIGSGKAEELAALVAATEANVVIFNHALSPAQERNLEQVCQCRVLDRTTLILDIFAQRARTHEGKLQVELAQLRHMSTRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRGRIKNINKRLERVDKQREQSRRARKRSDMPTVSLVGYTNAGKSTLFNALTSSDVYAADQLFATLDPTLRKLDLPDGAVILADTVGFIRHLPHDLVAAFKATLQETRQADLLLHIVDCADENMADNFEQVQNVLEDIDAAEVMQLVVCNKIDLLEDVTPRIEYDEHGKPVRVWLSAQKRLGFDLLLKAITELIGEVIHEFTLKIPATAGHYLGQFYRLDAIQQKEYDDLGNCILSVRLSDADWRRLAKQSQGELETFIFDPSTEKAVC
>NC_008577.1|WP_011715790.1|702511_703657_+|FtsH-protease-activity-modulator-HflK
MAWNEPGNKGNDPWGNKGGNDKGPPDLDEVFRNLSKRFGGKGNGSSGQSFSSFSLIIILAIAFVVWGLSGFYTIKEAERGVALRFGQHIGEVGPGLHWKATFIDQIYPVDVQSVRSIPASGSMLTSDENVVKVELDVQYRILDAYSYLFSAVDANASLREATDSALRYVIGHNKMDDILTTGRDAIRRDTWKELERIIEPYKLGLAIVDVNFLPARPPEEVKDAFDDAIAAQEDEQRFIREAEAYAREVEPKARGEVERMAQQANAYKEREILEARGKVARFELLLPEYQAAPEVTRKRLYLDAMQQVMTDTNKVLIDAKNNGNLMYLPLDKLMKEKPVTTPEVEHKAQQNVNSSSMSTTRIGEPLSGRPSREDRARQGRE
>NC_008577.1|WP_011715791.1|703660_704554_+|protease-modulator-HflC
MGRLSIVLIAIVLGIGLSSVMVVNEGERAIVARFGEIVKDKVDGKPVTRVFAPGIHFKVPVIDKVKLLDARIQTLDGAADRFVTSEKKDLMVDSYVKWRIFDFEKYYLSTNGGIKSNAETLLQRKINNDLRTEFGRRTIKEIVSGKRDELQNDALENASESAKDLGIEVVDVRVKQINLPANVSNSIYQRMRAERQAVAKEHRAQGKEQSEIIRATIDANVTVKIAEAERKALTIRGEGDAQAAKIYSDAYSKDPEFFSFLRSLDAYRASFSGNSDVMVLEPDSEFFKYMKSTSPKK

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Crispr_ID: NC_008577_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008577_2

4626121-4626448

Unclear

Consensus_repeat	Method
ATTTTCAGCTGCCTATTCGGCAGGTCAC	CRISPRCasFinder
ATTTTCAGCTGCCTATTCGGCAGGTCAC	CRT
ATTTTCAGCTGCCTATTCGGCAGGTCACA	PILER-CR

5 spacers

cas6f,cas7f,cas5f

The CRISPR arrays of NC_008577_2

>merge|NC_008577|2|4626121-4626448|CRISPRCasFinder,CRT,PILER-CR
AGGTTTTGCTGCCTTTTCGGCGGGTATCTCAAAGTCAACTTGTAAATGACGATTTTCACGATTTTCAGCTGCCTATTCGGCAGGTCACAGTTTGGGGCTGAGTTTGCCATTTTCCTAAATATTTTCAGCTGCCTATTCGGCAGGTCACGATGAAGCAGACCACCTCGATTACCCCACGCTATTTTCAGCTGCCTATTCGGCAGGTCACACTATTTATCAAGACCTTCTTTAAAATCAAACATTTTCAGCTGCCTATTCGGCAGGTCACAGTTTGGGGCTGAGTTTGCCATTTTCCTAAACATTTTCAGCTGCCTATTCGGCAGGTCAC

>NC_008577|2|2|4626121-4626448|CRISPRCasFinder
AGGTTTTGCTGCCTTTTCGGCGGGTATC	TCAAAGTCAACTTGTAAATGACGATTTTCACG
ATTTTCAGCTGCCTATTCGGCAGGTCAC	AGTTTGGGGCTGAGTTTGCCATTTTCCTAAAT
ATTTTCAGCTGCCTATTCGGCAGGTCAC	GATGAAGCAGACCACCTCGATTACCCCACGCT
ATTTTCAGCTGCCTATTCGGCAGGTCAC	ACTATTTATCAAGACCTTCTTTAAAATCAAAC
ATTTTCAGCTGCCTATTCGGCAGGTCAC	AGTTTGGGGCTGAGTTTGCCATTTTCCTAAAC
ATTTTCAGCTGCCTATTCGGCAGGTCAC

>NC_008577|2|1|4626121-4626448|CRT
AGGTTTTGCTGCCTTTTCGGCGGGTATC	TCAAAGTCAACTTGTAAATGACGATTTTCACG
ATTTTCAGCTGCCTATTCGGCAGGTCAC	AGTTTGGGGCTGAGTTTGCCATTTTCCTAAAT
ATTTTCAGCTGCCTATTCGGCAGGTCAC	GATGAAGCAGACCACCTCGATTACCCCACGCT
ATTTTCAGCTGCCTATTCGGCAGGTCAC	ACTATTTATCAAGACCTTCTTTAAAATCAAAC
ATTTTCAGCTGCCTATTCGGCAGGTCAC	AGTTTGGGGCTGAGTTTGCCATTTTCCTAAAC
ATTTTCAGCTGCCTATTCGGCAGGTCAC

>NC_008577|2|1|4626181-4626389|PILER-CR
ATTTTCAGCTGCCTATTCGGCAGGTCACA	GTTTGGGGCTGAGTTTGCCATTTTCCTAAAT
ATTTTCAGCTGCCTATTCGGCAGGTCACG	ATGAAGCAGACCACCTCGATTACCCCACGCT
ATTTTCAGCTGCCTATTCGGCAGGTCACA	CTATTTATCAAGACCTTCTTTAAAATCAAAC
ATTTTCAGCTGCCTATTCGGCAGGTCACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_008577.1\|WP_011718589.1\|4630349_4631582_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377670
NC_008577.1\|WP_011718584.1\|4623020_4623644_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_008577.1\|WP_011718590.1\|4631837_4633280_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240017
NC_008577.1\|WP_011718591.1\|4633269_4634691_-\|SMEK-domain-containing-protein	unknown	unknown	unknown
NC_008577.1\|WP_011718593.1\|4636212_4636524_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_008577.1\|WP_041412842.1\|4634847_4635222_-\|DUF4304-domain-containing-protein	unknown	unknown	gnl\|CDD\|379489
NC_008577.1\|WP_011624373.1\|4614585_4614945_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224470
NC_008577.1\|WP_011718588.1\|4628250_4630356_-\|hypothetical-protein	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867
NC_008577.1\|WP_011718582.1\|4618876_4619962_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_008577.1\|WP_011718579.1\|4613422_4614334_-\|hypothetical-protein	unknown	unknown	unknown
NC_008577.1\|WP_166485366.1\|4636743_4637265_+\|hypothetical-protein	unknown	unknown	unknown
NC_008577.1\|WP_011718583.1\|4619965_4622995_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_008577.1\|WP_011624854.1\|4616577_4617159_+\|lipid-binding-SYLF-domain-containing-protein	unknown	unknown	gnl\|CDD\|211400
NC_008577.1\|WP_011718587.1\|4627191_4628241_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09737_cas7f_CAS-I-F	gnl\|CDD\|187868
NC_008577.1\|WP_041412840.1\|4617890_4618205_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_008577.1\|WP_011718580.1\|4615049_4615451_+\|nitrous-oxide-stimulated-promoter-family-protein	unknown	unknown	gnl\|CDD\|371708
NC_008577.1\|WP_011718592.1\|4635669_4635972_-\|hypothetical-protein	unknown	unknown	unknown
NC_008577.1\|WP_011718581.1\|4615506_4616439_+\|hypothetical-protein	unknown	unknown	unknown
NC_008577.1\|WP_166485392.1\|4624561_4625701_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_008577.1\|WP_011718586.1\|4626578_4627190_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870

Protein	Function_ID	Function_description	E-value
NC_008577.1\|WP_011718589.1\|4630349_4631582_-\|hypothetical-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	6.84935e-09
NC_008577.1\|WP_011718584.1\|4623020_4623644_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.19675e-13
NC_008577.1\|WP_011718590.1\|4631837_4633280_-\|hypothetical-protein	gnl\|CDD\|240017	cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.	1.03123e-119
NC_008577.1\|WP_011718593.1\|4636212_4636524_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.9867e-12
NC_008577.1\|WP_041412842.1\|4634847_4635222_-\|DUF4304-domain-containing-protein	gnl\|CDD\|379489	pfam14137, DUF4304, Domain of unknown function (DUF4304). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 154 and 223 amino acids in length.	0.000243997
NC_008577.1\|WP_011718587.1\|4627191_4628241_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|187868	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog.	2.1995e-148
NC_008577.1\|WP_011718582.1\|4618876_4619962_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.09865e-63
NC_008577.1\|WP_041412840.1\|4617890_4618205_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000286742
NC_008577.1\|WP_011718583.1\|4619965_4622995_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_008577.1\|WP_011624854.1\|4616577_4617159_+\|lipid-binding-SYLF-domain-containing-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	3.04536e-27
NC_008577.1\|WP_011624373.1\|4614585_4614945_+\|hypothetical-protein	gnl\|CDD\|224470	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism].	3.6027e-30
NC_008577.1\|WP_011718580.1\|4615049_4615451_+\|nitrous-oxide-stimulated-promoter-family-protein	gnl\|CDD\|371708	pfam11756, YgbA_NO, Nitrous oxide-stimulated promoter. The function of ygaB is not known but it is a promoter that is stimulated by the presence of nitrous oxide. It is regulated by the gene-product of the bacterial nsrR gene.	2.14419e-55
NC_008577.1\|WP_011718588.1\|4628250_4630356_-\|hypothetical-protein	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	5.71226e-18
NC_008577.1\|WP_166485392.1\|4624561_4625701_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.32507e-60
NC_008577.1\|WP_011718586.1\|4626578_4627190_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	9.55951e-60

>NC_008577.1|WP_166485392.1|4624561_4625701_+|GGDEF-domain-containing-protein
MINSDNSTLLTFIEIIKFEASEKYLIKKYFDYRICTTAILLLLIPLGFAEGLFDHITTPELNGELLELRLYMFFLIIPAILTFKAKSVKIATATIIVTVIFISFLSIKMAEILGEEAIYTVTTVAIYPFLIFFILIGLSIYIQITALFSAFLFVIHYKLDAATNMDLQNIYFQIAFLYSLAALLVMLIFSWSYYNRYCLELALEKGSRTDPLTGVANRRHFDSLLKSEVNRNSRFGSACALIILDIDFFKRINDTYGHPTGDSVICSLANFCVTLSRETDLVARLGGEEFAIILPDTNISSAKNLGERIRLHVENQSLISETGEKVIWTISLGISALQEHKITKNNNEFIAEQLIQHADTALYEAKKGGRNRTVLYDSE
>NC_008577.1|WP_011718584.1|4623020_4623644_-|TetR/AcrR-family-transcriptional-regulator
MNTKKITKSSRGRPVGDHDEKRNELLCTAINLLVTDGYAGLSMRNLASKAQVTTGAITYYFSNKSELMKGVSDELFNRFSLLLAKNTEIDIKQAVEEWINWTYSDGGEIWKAFLQVQFYAAEDKTFIDYAQKRYDIFISQLKHFIESGQKSKQIRNDIPAEILAEQLSAMGDGMMIMQSIYPERLSIEKIAQFKKGILSLISPQLAV
>NC_008577.1|WP_011718583.1|4619965_4622995_+|efflux-RND-transporter-permease-subunit
MSIASVAINNRVVTLVLTVVMLIAGLYIFNGMSRLEDPEFTIKDALIITPYNGASALEVEQEVTELLEKTVQQLGELDKVTSKSERGLSTITVTIKEQYNKETLPQVWNKLRQKIDDVKYYLPPGAGPSLVIDDYGDVYSIFMVVSGDGYSFKELKTYVNDLQQQLLLVNGVGKITTFGEKSEAIYIEFNRSRMAQLGISPEIVAAQLNGKGLVVDAGRAHVGSSSIAVSTTGGFTKVSDFEKLLITHDTKQFYLSDIAKVSRGYVSPSTQLINFDGKAGIGLGISTVSGGNTVDMGEAVLAKLSELESQRPAGIEFGYVSLQSEGVKEAISGFTSSLAEAVIIVIVVLLFFMGLRSGLLIGFVLILTIAGSFIFLAPMGVALERISLGALIIALGMLVDNAIVVVDGILIRMQKGESAESAAPRVVNQSAWPLLGATLIAILAFAAIGTSNDATGEYCRSLFQVVMVSLLLSWVTAVTITPLLCVMYLKAPKSTDKTSPYQGTFYTKYRGLLASSIRHRYLSSASIIGIFALSLWGFSFVQQNFFPSSTRAQFMVDFWLPQGTHIEETQKHAESVENYLGNLANVEHVTTTIGEGALRFLLTYQPQQSNSSYAQFLVDVDDYTVIKTLIPKIEVELLQKYPDALVYASPFELGTGTAGKIQARISGPDTDVLRETSDKVLEVFSKESNTKGVRTDWRNKQLYIEAVLAEEQANINGINRGMVAEAIKESFEGVTTGVYRENDLLLPIIIRANENERSDITNIENVQIWSPNAQKMIPLRQVVQSFETKFEDGLILRRNRERTITIFADPVTGTASELLATLKPQVEAIKIPPGYTLEWGGEYEDSSKAEKGLASSIPIFILSMILITIVIFNSLKQTLVIWLCVPLALIGVTAGMLATNQPFGFMALLGFLSLIGMLIKNAIVLVDEINLEQSQGKSLINSILDSGVSRLRPVAMAALTTALGMIPLIFDAFFVSMAVTIISGLMFATALTMIVLPIVYALIFKAENP
>NC_008577.1|WP_011718582.1|4618876_4619962_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSIFEKNHKVTFLIFGAVLLLVGCEQSQIDTKETVSRPVKLLQVEQTPSTSTYRYPGSVSSVKEAVLAFEVPGKVIKLHVKEGDFVKQDTVLAEIDDRDYQAQLDSAKSDLIVAKSDFQRYEKALKADAVTPQAFQQAKRNLEVAQAAFNQADKALTETKLIAPFAGRVVTREIDLFATVHAKQPIMQLHSESAYEMVVSVPESDWAQGERVNSAADIKLDNQLFVTLTAFPDKRFEGKITEFSGQADAATRTYKVKVAFSVPDKTPISSGMTGHAIYLSSNESTNILSIPLDAIVGNSDNSAFVWLYDPINGQVTKKSITIGNITEQTVNVLSGLKVGDVIAVSGVHSLYDGYPVYPMKD
>NC_008577.1|WP_041412840.1|4617890_4618205_+|helix-turn-helix-transcriptional-regulator
MKINTNVDIGNKLRIARLSKGLSLDNLAEKIGLSKALLWEIENRSVENLDIQILNVIIKELSITYDSAFENYIKDTSILNDYSLLEPEQKQIVRELIKNLTQNN
>NC_008577.1|WP_011624854.1|4616577_4617159_+|lipid-binding-SYLF-domain-containing-protein
MKSFLSLIVASTCLIASFMAPAAQADDSYTEALNNFHQAKETRKFFDTAYGYALFPTVGKGGIGIGAAYGKGRVFQAGQYMGDSSLTQLSIGFQLGGQAYSEIIFFKDAKSYNEFTSGSFEFDAQASAVAINMGANAKAGTTGNSAGAGQAGGNQSATAAYINGMAVFTVAKGGLMFEAALAGQSFSFEPRGN
>NC_008577.1|WP_011718581.1|4615506_4616439_+|hypothetical-protein
MNEFNTFFAQAYWWLSLFGGLHCLALAIYIRYFYHSNNNQRLLAGFLSLVGLYFLTGMLNRDNTPIPIHVLFNLITPIYFLLMPLLYLYCKRSLEQSTEPVGFSRHYWPALITLFLAMLDMVVRLNLHKNALWFQAEFFKHRQDIDLSHWSLALPLLLFIQTATYFFALWRLFQRHKLRQQQRNEAPQQTLKLIRFRWLFGLTLAMLFNWLLRVFVVVLPFYLGDSLSTLSHALPRLSLLLSFYLLAAYGLKQITRTAYLKGHMSAPQPKAEPQAGEILTPEEFEFIQQLQQESNEGSEKITNTPSRSKN
>NC_008577.1|WP_011718580.1|4615049_4615451_+|nitrous-oxide-stimulated-promoter-family-protein
MDSAALLTGKLRYEHETISAMAKIYCKAKHQGQTASGLCEECLALLEYAAVRLDRCPYGQDKPTCNKCPVHCYKPAQKAQVKEIMIFAGPRMLLPHPIRAIKHLLAERQPVPASVPEAASNRHQRIAISQKNL
>NC_008577.1|WP_011624373.1|4614585_4614945_+|hypothetical-protein
MQNILIVAHASPYGTEKLFNSLRIALALKDQTEQQVDLKIFLMSDAVFGALKHQTTPDLSYNLQQMFEILSAQQVPILLCKTCAQARGVNPEMLLEGAQIGTLQDLTRWTLAADKVMHI
>NC_008577.1|WP_011718579.1|4613422_4614334_-|hypothetical-protein
MKVVVVFILIAIGVFLFRRAQRLAKEEQEAMMAKKSTEKTRDTSASPDEAEPTPDLAPSATNESEAAAAKAPEVELMPRDVEPASRVELSEDIIDVEIPATTHDENVIILADTHAADADKDSAIPEDDVLVIKASEVKEDPVVDVPVKAKESVESSPEVASTPLAKDESLAALGSWANVTLERAVEEYQSADTALARYNALQNVIAECYKQRKSTEYLAYGAALHGLYLALFHSANTEKPKELELKTPGFMQLATLLNDTQDFDKAIALCQEAIKLGLTDGTVTGFEGRISRIEKAQAKATTA
>NC_008577.1|WP_011718586.1|4626578_4627190_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MQRYYFMVRFLPQEANLALLMGRCISVMHGYICKHEIKGLGLTFPAWSDASIGNVIAFVHSDEIVLSELKQQSYFQYMKECGFFSLGNVEMVPDDCAEVMFKRNQAIAKIFVGEARRRLKRLEKRALVRGETFNPIKNIQPREFYTFHRIAISSGSNKQDYLLHIQKMVAKEQTEPLFSSYGVASNLQLNGTVPELSHLVDKI
>NC_008577.1|WP_011718587.1|4627191_4628241_-|type-I-F-CRISPR-associated-protein-Csy3
MELCNVLKYDRSLYPSKAVFFYKTADSDFVPLEAEITRIRGQKAGFTEAFTPQFKSKNLAPQDLTHCNPLTIEECYVPPNVDHIYCRFSLRVQANSLKPSGCSDSEVSSLLEKLSAAFKECDGYQELATRFCKNLLLGTWLWRNQNSGNTQIDIKTSTGKCYQISNTRQLAWNIWSDEARTVLGELSKEMHLALTDPNVFWNADITAKIETVFCQEIYPSQTFGEKSAEGETSKQFTKVKCTDGRYAVSFNSVKIGAAIQSIDNWWDQDDVKRLRVHEYGADKELGIARRSPESALSFYTLFVNTELYLAELNQQAAEPGHSIHPNIYYLFAVLIKGGMFQKKAETKKA
>NC_008577.1|WP_011718588.1|4628250_4630356_-|hypothetical-protein
MVKNLHLRELLDIEDVQARSTALRRAFAAYTEPLDVTGEESSALIILLNLTYPKKLVDDLLDKRLARTTVNNQTHIDVCIDEVQWLHTHNLKYPDIRVSKQRLVASSPQLHPNMLSSANCQRTLGWSHDSAKVNFAKLFGCQFIWQDKVTCLATLMCEAPKHWKEAFQELGMPVKQFMNICGRVKHVLPAQLSPDKVDKYSVQVRMPFRDGYIAITPVVSHALQSELQQAAIKKQGRYTSLEFIRPAAVSELVASLGGNAKALNYPPRINKKTHGLGNNLLARVLSGHDVLNQNVLSQPRFMRVLDELLSSESALALKQRRQQKVANLRQIRTMLSEWLAPMLEWRLEVKEGPILLSELEPINGSLEYQFLTFENELLPELLLPLFDRLNSVMSHSAMISQYAFHQRLMPLLRNSLKWLLTHLAYKEPLLQNDAADEHFQRYLHLKGIRVFDAQALSNPYCVGIPSLTAVWGMMHNYQRRLNEGLGTQLRFTSFSWFIRQYSSVSGKKLPEYGMQGSKENQFRRAGIIDNRHCDLVFDLVIHIDGYEDALAILDNRTEMLKASFPANFAGGVMHPPELDAVGAWCQLYQCEAELFSTLKRLPMSGKWIMPTRYSMGNVNDLLFLLDKNSSLCPTMFGYLPLTEPVSRVGSLEPLHCYAEPALGVVECASAIEIRLQGQINYFKRAFWMLEAKEHSMLMKRI
>NC_008577.1|WP_011718589.1|4630349_4631582_-|hypothetical-protein
MAFLFSPRARAFIDESLESYLLRIVSENFFDSYQQLSLAIREELHELDFEAHGAFPIELKRLNIYHAKHNSHFRMRALGLLESLLGLPPHELEKIALFRSNRVFIGSSVAVHRNDIDIPLSFIRYANEDDVESVPVCPECLKDEPYIRQVWHLKPYAACAKHECELIHHCPECKASLNYIENESIGYCSCGFELSKAAVISAKQPDLMLARSIIGGDVTSTNPLLHEVCATHRLAALLWYQKRYCKSKEASFSDAVEYFDNWPENFYQELDQLTQGAELRLIKLFNHTAFRFIYGELILHSRCLYPEDKDPHFIYAALMRYLQRLVELHPKSKKPNVADTLVTVAETTVLLSTTQEQVYRLHQDGILTSAFRQKIKQRIDPHVGVFYLRQVIEYKSSFGSDRQGMYLSAW
>NC_008577.1|WP_011718590.1|4631837_4633280_-|hypothetical-protein
MQIKILEEPKLEFANGTHICPKAGIETLGVYDKNDEFRQSELRLGIVGRGEGVDLLDLWIAKCQEGIEGKESKYSNLFRGFGGFTLHHGFYAKFLYGPTLTRTIQKSELNKTLKIQSREERVKVCVDLYFDQIRFLAEHRPVDVIICVIPNDMFDALTKEKGKDEDPENYDGDSNDDKSKNSLEHNFRRLLKAKTMHLGKPLQLVLEKSLSIDTGNKGQQDDATRAWNFCTALYYKGNKTIPWRLVEETHKPKTCYVGIGFYKSRDNETVSTSLAQVFDEFGHGVILRGAPVQLDKRDRRPYMNEEQAFELLMNALNEYDHALMQMPARIVIHKSSNFREEEIRGFTRAIESKGIRMKDFVTVMESKVRLYSYEQYPPVRGTLLSLSESKAILYTKGAVNFYKTYPGMYVPSPLEIRAFEHDSSLENLCEEVLGLTKMNWNNTQFDGRYPITLECSRKVGEIMKYVEVNQKPQVSYSFYM
>NC_008577.1|WP_011718591.1|4633269_4634691_-|SMEK-domain-containing-protein
MKQIDIENQLREVVSRLITEVDLATKQGRLDVNLISEDAWIPILKEVYQCPNLVNLNRKHKNFPGIDLGDEQDRVAFQVTSSTDIEKVKSTLEQFKKRNYKNAFDELYIFMLRSKQKSYSQDAIDKVNGHEIRFDAKEHIIDPGDILSQVTGLRLPAQERMLQEFREILGDVEASVKKLNAPENTPYLLVSNLIEVTPPNELYVAELFIDEESTIAAAKRDLNYNGSPPNKHLLVRLALQLAGLDCHGWAIFENRIFTFYDMERESAFRSIVDVGSIEDLTTEDISQHELVEYQNLFKCLMKDTLRDQLQSLNVNWNKQQNQFYFLPDEKDSEQRREEWVGKKLSRRRVFEKKYQTKDPTKVAFFKHLAFDISFIDIDSRWYATVTPSWYYTWNLYKRNRFHDDLLSKQKRLEHNNSVRDQVRFIGYFLANSRNDNDLISFGELVEFQCLSNISLEENDELEEVLEEEDVSAN
>NC_008577.1|WP_041412842.1|4634847_4635222_-|DUF4304-domain-containing-protein
MREELKLAVTDYLRRQGFKGSIPFFRKETKGWYQTLDFQFNKYGGSFAVNLSLWEPNNQFLKLPLPKQKILASRSSGSLSSHLKNKQNQDYWFRFVKGIIFPIYNYKKASQEFIVIYSYKAENV
>NC_008577.1|WP_011718592.1|4635669_4635972_-|hypothetical-protein
MKNKVKGISFAAVKAAAFKDPVVLEAYLLERASESNRIDIELFMAKLKVVLSALPQKDIGVCDLANELGIVLASVLGNEKNIEKECLEGISHGFSLTRTT
>NC_008577.1|WP_011718593.1|4636212_4636524_-|helix-turn-helix-transcriptional-regulator
MADKIINPLPLRLKQARTAKGISQKQLGIQLGMEVGTASARMNQYEKGKHTPDYQTLKAIADELGVPVAYFFCESESTAKLLCLLEKMTEEEKSNLIEQITKS
>NC_008577.1|WP_166485366.1|4636743_4637265_+|hypothetical-protein
MPKMIRINATILTILIVDEKQQLTVTQIKSQMVRVNPSILPRESEQIVRRTLSKLSNIGFLEKITSGKRTVFEKTSLFDITRLMPSKPRLTKIEVSPTKLPEIEQLQATLHQYQEGFHGCIGEAEELKRLYEALPSSKINLFPRYLDARNRGSTLAGKIKAIEAYLTDLKGLS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	NZ_CP013115	Shewanella xiamenensis strain T17 plasmid pSx1, complete sequence	236458-236489	1	0.969
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	NZ_CP013115	Shewanella xiamenensis strain T17 plasmid pSx1, complete sequence	236458-236488	1	0.968
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	NZ_AP014682	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence	22643-22674	5	0.844
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	MN693865	Marine virus AFVG_250M332, complete genome	37437-37468	6	0.812
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	157372-157402	6	0.806
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	198957-198987	6	0.806
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	MN693865	Marine virus AFVG_250M332, complete genome	37438-37468	6	0.806
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	157371-157402	7	0.781
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	198956-198987	7	0.781
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	MN693203	Marine virus AFVG_25M359, complete genome	11691-11721	7	0.774
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	MN693203	Marine virus AFVG_25M359, complete genome	11691-11722	8	0.75
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	MT601274	Bacillus phage vB_BsuS-Goe13, complete genome	245-275	8	0.742
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	MT601273	Bacillus phage vB_BsuS-Goe12, complete genome	245-275	8	0.742
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	KT151959	Brevibacillus phage Sundance, complete genome	67542-67572	8	0.742
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	MT601274	Bacillus phage vB_BsuS-Goe13, complete genome	244-275	9	0.719
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	MT601273	Bacillus phage vB_BsuS-Goe12, complete genome	244-275	9	0.719
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	KT151959	Brevibacillus phage Sundance, complete genome	67542-67573	9	0.719
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	LC377538	Staphylococcus aureus plasmid pNTUH_3874 NTUH_3874 DNA, complete sequence	41417-41447	9	0.71
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	NZ_CP047806	Staphylococcus aureus strain UP_1654 plasmid unnamed, complete sequence	28529-28559	9	0.71
NC_008577_2	2.8\|4626330\|31\|NC_008577\|PILER-CR	4626330-4626360	31	MK765613	Tortoise microvirus 61 isolate 61_SP_107, complete genome	2050-2080	9	0.71
NC_008577_2	2.1\|4626149\|32\|NC_008577\|CRISPRCasFinder,CRT	4626149-4626180	32	MN694774	Marine virus AFVG_250M941, complete genome	31533-31564	10	0.688
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	LC377538	Staphylococcus aureus plasmid pNTUH_3874 NTUH_3874 DNA, complete sequence	41416-41447	10	0.688
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	NZ_CP047806	Staphylococcus aureus strain UP_1654 plasmid unnamed, complete sequence	28528-28559	10	0.688
NC_008577_2	2.4\|4626329\|32\|NC_008577\|CRISPRCasFinder,CRT	4626329-4626360	32	MK765613	Tortoise microvirus 61 isolate 61_SP_107, complete genome	2050-2081	10	0.688
NC_008577_2	2.7\|4626270\|31\|NC_008577\|PILER-CR	4626270-4626300	31	MN204496	Streptomyces phage Kardashian, complete genome	52436-52466	10	0.677
NC_008577_2	2.3\|4626269\|32\|NC_008577\|CRISPRCasFinder,CRT	4626269-4626300	32	MN204496	Streptomyces phage Kardashian, complete genome	52435-52466	11	0.656

1. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to NZ_CP013115 (Shewanella xiamenensis strain T17 plasmid pSx1, complete sequence) position: , mismatch: 1, identity: 0.969

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
actatttatcaaaaccttctttaaaatcaaac	Protospacer
************.*******************

2. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to NZ_CP013115 (Shewanella xiamenensis strain T17 plasmid pSx1, complete sequence) position: , mismatch: 1, identity: 0.968

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
ctatttatcaaaaccttctttaaaatcaaac	Protospacer
***********.*******************

3. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to NZ_AP014682 (Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence) position: , mismatch: 5, identity: 0.844

actatttatcaagaccttctttaaaatcaaac--	CRISPR spacer
actatttatcaagacattcgttata--caaactc	Protospacer
*************** *** *** *  *****

4. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to MN693865 (Marine virus AFVG_250M332, complete genome) position: , mismatch: 6, identity: 0.812

-actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
aactaggt-tcaagaccttctttaaatgcaaag	Protospacer
 ****  * *****************  ****

5. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 6, identity: 0.806

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
atatttatcaagaccttatttagaaaaaacc	Protospacer
 **************** ****.**  ** *

6. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.806

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
atatttatcaagaccttatttagaaaaaacc	Protospacer
 **************** ****.**  ** *

7. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to MN693865 (Marine virus AFVG_250M332, complete genome) position: , mismatch: 6, identity: 0.806

-ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
actaggt-tcaagaccttctttaaatgcaaag	Protospacer
 ***  * *****************  ****

8. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 7, identity: 0.781

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
tatatttatcaagaccttatttagaaaaaacc	Protospacer
  **************** ****.**  ** *

9. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
tatatttatcaagaccttatttagaaaaaacc	Protospacer
  **************** ****.**  ** *

10. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to MN693203 (Marine virus AFVG_25M359, complete genome) position: , mismatch: 7, identity: 0.774

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
atttttattaagactttctttaaaatcagta	Protospacer
 * *****.*****.*************.

11. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to MN693203 (Marine virus AFVG_25M359, complete genome) position: , mismatch: 8, identity: 0.75

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
gatttttattaagactttctttaaaatcagta	Protospacer
. * *****.*****.*************.

12. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to MT601274 (Bacillus phage vB_BsuS-Goe13, complete genome) position: , mismatch: 8, identity: 0.742

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
gttgatatcaagaccacctttaaaatcaaca	Protospacer
 *   ********** .************

13. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to MT601273 (Bacillus phage vB_BsuS-Goe12, complete genome) position: , mismatch: 8, identity: 0.742

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
gttgatatcaagaccacctttaaaatcaaca	Protospacer
 *   ********** .************

14. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to KT151959 (Brevibacillus phage Sundance, complete genome) position: , mismatch: 8, identity: 0.742

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
taatttaacaagaacttctttaaaagaagag	Protospacer
. ***** ***** ***********  *.*

15. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to MT601274 (Bacillus phage vB_BsuS-Goe13, complete genome) position: , mismatch: 9, identity: 0.719

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
ggttgatatcaagaccacctttaaaatcaaca	Protospacer
. *   ********** .************

16. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to MT601273 (Bacillus phage vB_BsuS-Goe12, complete genome) position: , mismatch: 9, identity: 0.719

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
ggttgatatcaagaccacctttaaaatcaaca	Protospacer
. *   ********** .************

17. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to KT151959 (Brevibacillus phage Sundance, complete genome) position: , mismatch: 9, identity: 0.719

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
ctaatttaacaagaacttctttaaaagaagag	Protospacer
 . ***** ***** ***********  *.*

18. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to LC377538 (Staphylococcus aureus plasmid pNTUH_3874 NTUH_3874 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
atcaatatcaagaccttctgtaaattcattt	Protospacer
 *   ************** **** ***  .

19. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to NZ_CP047806 (Staphylococcus aureus strain UP_1654 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
atcgatatcaagaccttctgtaaattcattt	Protospacer
 *   ************** **** ***  .

20. spacer 2.8|4626330|31|NC_008577|PILER-CR matches to MK765613 (Tortoise microvirus 61 isolate 61_SP_107, complete genome) position: , mismatch: 9, identity: 0.71

ctatttatcaagaccttctttaaaatcaaac	CRISPR spacer
tccagtgtcacgaccatctttaaaatcaaag	Protospacer
..   *.*** **** **************

21. spacer 2.1|4626149|32|NC_008577|CRISPRCasFinder,CRT matches to MN694774 (Marine virus AFVG_250M941, complete genome) position: , mismatch: 10, identity: 0.688

tcaaagtcaacttgtaaatgacgattttcacg	CRISPR spacer
attaagtcaatttgtaaatcacgattaagaat	Protospacer
 . *******.******** ******   *

22. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to LC377538 (Staphylococcus aureus plasmid pNTUH_3874 NTUH_3874 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
catcaatatcaagaccttctgtaaattcattt	Protospacer
  *   ************** **** ***  .

23. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to NZ_CP047806 (Staphylococcus aureus strain UP_1654 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
catcgatatcaagaccttctgtaaattcattt	Protospacer
  *   ************** **** ***  .

24. spacer 2.4|4626329|32|NC_008577|CRISPRCasFinder,CRT matches to MK765613 (Tortoise microvirus 61 isolate 61_SP_107, complete genome) position: , mismatch: 10, identity: 0.688

actatttatcaagaccttctttaaaatcaaac	CRISPR spacer
ttccagtgtcacgaccatctttaaaatcaaag	Protospacer
 ..   *.*** **** **************

25. spacer 2.7|4626270|31|NC_008577|PILER-CR matches to MN204496 (Streptomyces phage Kardashian, complete genome) position: , mismatch: 10, identity: 0.677

atgaagcagaccacctcgattaccccacgct	CRISPR spacer
gcatcatggaccaccccgagtaccccacgct	Protospacer
...  ...*******.*** ***********

26. spacer 2.3|4626269|32|NC_008577|CRISPRCasFinder,CRT matches to MN204496 (Streptomyces phage Kardashian, complete genome) position: , mismatch: 11, identity: 0.656

gatgaagcagaccacctcgattaccccacgct	CRISPR spacer
cgcatcatggaccaccccgagtaccccacgct	Protospacer
 ...  ...*******.*** ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1286559 : 1294003

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011716199.1\|1286559_1288227_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	8.6e-39	27.6
WP_011625551.1\|1288417_1289671_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	4.6e-101	53.1
WP_011073317.1\|1289881_1290331_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_011716200.1\|1290406_1291552_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	5.7e-50	34.9
WP_011716201.1\|1291559_1292216_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.7e-27	34.0
WP_011716202.1\|1292283_1293387_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.8e-68	39.7
WP_041412575.1\|1293526_1294003_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.8e-29	45.0

DBSCAN-SWA_2

1315750 : 1330855

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011716218.1\|1315750_1317046_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.4e-132	58.9
WP_039978374.1\|1317089_1317446_+	cell division protein FtsB	NA	NA	NA	NA
WP_011716219.1\|1317456_1318206_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_011621907.1\|1318257_1318737_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_011716220.1\|1318766_1319894_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_011716221.1\|1319890_1320640_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.1e-73	53.9
WP_011716222.1\|1320636_1321272_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.7e-35	51.2
WP_011716223.1\|1321356_1322253_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	2.6e-10	31.0
WP_011621912.1\|1322333_1323314_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.4e-33	32.9
WP_011716224.1\|1323428_1326014_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	6.7e-30	22.9
WP_011716225.1\|1326396_1327470_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.4e-111	61.9
WP_041412576.1\|1327544_1327955_+	regulatory protein RecX	NA	NA	NA	NA
WP_011716227.1\|1328230_1330855_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.2e-80	39.2

DBSCAN-SWA_3

2457917 : 2469223

uncultured_Caudovirales_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011717032.1\|2457917_2460671_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	4.2e-83	47.7
WP_011717033.1\|2460740_2461361_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_011717034.1\|2461369_2462701_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.9e-76	39.4
WP_011622732.1\|2462693_2463068_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.5e-09	37.4
WP_011622733.1\|2463086_2464373_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	9.8e-99	45.3
WP_011717035.1\|2464581_2464920_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_011717036.1\|2464913_2465195_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_011717037.1\|2465194_2465551_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_041413025.1\|2465565_2465955_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.1e-21	43.3
WP_011717039.1\|2466014_2466674_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.1e-34	44.3
WP_041412630.1\|2466933_2467836_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_011717040.1\|2467951_2469223_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	4.1e-17	22.3

DBSCAN-SWA_4

2733050 : 2743270

Yellowstone_lake_phycodnavirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011717217.1\|2733050_2734769_+	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.8e-56	29.9
WP_011622520.1\|2734768_2735263_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_011622519.1\|2735397_2735841_-	Hsp20 family protein	A0A2L0V0Y9	Agrobacterium_phage	1.8e-20	49.5
WP_011717218.1\|2736145_2736577_-	nucleoside-diphosphate kinase	K7YW26	Megavirus	8.2e-18	40.2
WP_041412653.1\|2736798_2736966_-	hypothetical protein	NA	NA	NA	NA
WP_011622517.1\|2737161_2737359_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_011622516.1\|2737427_2738327_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	3.2e-40	33.2
WP_011622515.1\|2738482_2738818_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_011717219.1\|2738826_2740689_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.2e-103	39.3
WP_011717220.1\|2740756_2741281_-	co-chaperone HscB	NA	NA	NA	NA
WP_011072278.1\|2741296_2741620_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	4.1e-22	43.0
WP_011072277.1\|2741634_2742018_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.0e-51	77.4
WP_011626051.1\|2742055_2743270_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	6.7e-33	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_008573

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_008573_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_008573_1

141881-141984

Orphan

Consensus_repeat	Method
AGATAAATCTTGCTCCGGGACTTCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_008573_1

>merge|NC_008573|1|141881-141984|CRISPRCasFinder
AGATAAATCTTGCTCCGGGACTTCTGCCATTAGGCTATGACAGCTTGATTCTGGTGGTACTTCGTTAGGCATTAACGGAGATAATTCTTGCTCCGGGACTTCTG

>NC_008573|1|1|141881-141984|CRISPRCasFinder
AGATAAATCTTGCTCCGGGACTTCTG	CCATTAGGCTATGACAGCTTGATTCTGGTGGTACTTCGTTAGGCATTAACGG
AGATAATTCTTGCTCCGGGACTTCTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_008573.1\|WP_011711608.1\|149908_155239_+\|conjugal-transfer-protein-TraG	unknown	unknown	gnl\|CDD\|369594
NC_008573.1\|WP_037426906.1\|133864_134128_-\|hypothetical-protein	unknown	unknown	unknown
NC_008573.1\|WP_083848305.1\|144909_145401_-\|hypothetical-protein	unknown	unknown	unknown
NC_008573.1\|WP_011711605.1\|147132_147420_+\|hypothetical-protein	unknown	unknown	unknown
NC_008573.1\|WP_011711606.1\|147518_148514_+\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|274275
NC_008573.1\|WP_011711597.1\|137971_138256_-\|hypothetical-protein	unknown	unknown	unknown
NC_008573.1\|WP_011711607.1\|148510_149905_+\|conjugal-transfer-protein-TraH	unknown	unknown	gnl\|CDD\|368759
NC_008573.1\|WP_011711604.1\|146056_147124_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274757
NC_008573.1\|WP_011711596.1\|137305_137962_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377500
NC_008573.1\|WP_011711611.1\|156886_157792_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379711
NC_008573.1\|WP_011711600.1\|139488_141363_-\|conjugative-transfer-system-coupling-protein-TraD	unknown	unknown	gnl\|CDD\|274760
NC_008573.1\|WP_011711602.1\|144180_144900_-\|hypothetical-protein	unknown	unknown	unknown
NC_008573.1\|WP_140374528.1\|156289_156799_+\|hypothetical-protein	unknown	unknown	unknown
NC_008573.1\|WP_037426941.1\|133552_133804_-\|hypothetical-protein	unknown	unknown	unknown
NC_008573.1\|WP_083848304.1\|138327_138726_-\|hypothetical-protein	unknown	unknown	unknown
NC_008573.1\|WP_011711599.1\|138840_139476_-\|DUF4400-domain-containing-protein	unknown	unknown	gnl\|CDD\|379573
NC_008573.1\|WP_011711594.1\|134680_136039_-\|conjugal-transfer-protein-TraB	unknown	unknown	gnl\|CDD\|319756
NC_008573.1\|WP_011711609.1\|155349_156240_+\|hypothetical-protein	unknown	unknown	unknown
NC_008573.1\|WP_041413324.1\|136040_137300_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368991
NC_008573.1\|WP_011711593.1\|134134_134677_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_008573.1\|WP_011711611.1\|156886_157792_-\|hypothetical-protein	gnl\|CDD\|379711	pfam14882, PHINT_rpt, Phage-integrase repeat unit. This repeat family is found on phage-integrase proteins in up to 15 copies. The function is not known.	0.000434432
NC_008573.1\|WP_011711600.1\|139488_141363_-\|conjugative-transfer-system-coupling-protein-TraD	gnl\|CDD\|274760	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. [Mobile and extrachromosomal element functions, Other].	0
NC_008573.1\|WP_011711608.1\|149908_155239_+\|conjugal-transfer-protein-TraG	gnl\|CDD\|369594	pfam07916, TraG_N, TraG-like protein, N-terminal region. The bacterial sequences found in this family are similar to the N-terminal region of the TraG protein. This is a membrane-spanning protein, with three predicted transmembrane segments and two periplasmic regions. TraG protein is known to be essential for DNA transfer in the process of conjugation, with the N-terminal portion being required for F pilus assembly. The protein is thought to interact with the periplasmic domain of TraN to stabilize mating-cell interactions.	2.02383e-25
NC_008573.1\|WP_041413324.1\|136040_137300_-\|hypothetical-protein	gnl\|CDD\|368991	pfam06586, TraK, TraK protein. This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown.	0.00278656
NC_008573.1\|WP_011711606.1\|147518_148514_+\|conjugal-transfer-protein-TraF	gnl\|CDD\|274275	TIGR02740, putative_pilus_assembly_and_synthesis_protein, TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.	1.45224e-55
NC_008573.1\|WP_011711599.1\|138840_139476_-\|DUF4400-domain-containing-protein	gnl\|CDD\|379573	pfam14348, DUF4400, Domain of unknown function (DUF4400). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 209 and 249 amino acids in length. There is a single completely conserved residue P that may be functionally important.	0.000131129
NC_008573.1\|WP_011711607.1\|148510_149905_+\|conjugal-transfer-protein-TraH	gnl\|CDD\|368759	pfam06122, TraH, Conjugative relaxosome accessory transposon protein. The TraH protein is thought to be a relaxosome accessory component, also necessary for transfer but not for H-pilus synthesis within the conjugative transposon.	9.22679e-30
NC_008573.1\|WP_011711604.1\|146056_147124_+\|hypothetical-protein	gnl\|CDD\|274757	TIGR03739, PRTRC_D, PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.	2.55469e-57
NC_008573.1\|WP_011711596.1\|137305_137962_-\|hypothetical-protein	gnl\|CDD\|377500	pfam05309, TraE, TraE protein. This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression. The exact function of the TraE protein is unknown.	6.02011e-12
NC_008573.1\|WP_011711594.1\|134680_136039_-\|conjugal-transfer-protein-TraB	gnl\|CDD\|319756	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS). This family contains TraB (VirB10 homolog) and a component of the type IV secretion system (T4SS), and similar proteins. T4S system is employed by pathogenic bacteria to export virulence DNAs and/or proteins directly from the bacterial cytoplasm into the host cell. It forms a large multiprotein complex consisting of 12 proteins termed VirB1-11 and VirD4. VirB10, interacts with VirB7 and VirB9, forming the membrane-spanning 'core complex' (CC), around which all other components assemble. The CC is inserted in both the outer and inner membranes, playing a fundamental role as a scaffold for the rest of the T4SS components and actively participating in T4S substrate transfer through the bacterial envelope via conformational changes regulating channel opening and closing. TraB is localized similarly to related proteins in other systems, but unlike in other systems, Neisseria gonorrhoeae TraB does not require the presence of other T4SS components for proper localization. It has been shown to be expressed with TraK (VirB9 homolog) at low levels in wild-type cells, suggesting that gonococcal T4SS may be present in single copy per cell and the small amounts of these proteins are sufficient for DNA secretion.	6.64034e-69

>NC_008573.1|WP_011711600.1|139488_141363_-|conjugative-transfer-system-coupling-protein-TraD
MSKSIETNGLFMENMYRPIYEIQSSYAWAGASLFTAGSWVYHGVSGHDVSMVAVSVIAATAGMSVKRLKEALPQIRRQIKLVYNYQYLIESSALWELSKTQRDKAFFGRGFEWTITEANRAYQLVGKRPEHAKGFLPWAVRRALKKVEADTEKLEGRPWIQGCGDEQDLWLDASLFWSHSFYTGLPGAGKTTMLTLNSVGALYRGNSVLVLDPKNDPNWKNRLRAEAKRLGVPFYYFNIAEPSQSVRIDPLVNFTVTTEIASRLANVLEKGSGSSEGFRSYAWDSFYVTAEALRFIGKRPSIKMVADYMLNRKSELALAALSKIMTMHYGPDWYANMATQIAEEGRGSLLQGLIMRYQQVLIPDDKGEDAVSSFIGFLTHDQSHQSKMLATTKPMLTQLTAAPLDKMLSPDPNDTEDERPIIDIKKFIDTGGVLYIATDSSGNPAISAATSKLIMEDTCAAAASRYNYEGGKGVRVSVFGDEIHSALSDGLINLAAMGRGAGFELHLSTQGVPDLIDKAGEAVASRVLSLTANWFCLRARDDITRERFAALLPEYPIKSKQWQLSSNTDSTSKLHNFSGSVGERIMEADKPAYPLSLMSELPKLQYVARLANGKTYQCRIPILL
>NC_008573.1|WP_011711599.1|138840_139476_-|DUF4400-domain-containing-protein
MDDVVESKTLHGRLILAAGALISIYVLIFMQPQEHNEMLRKEISNIEKAISTEATKVVVFRAKSWYEATMVESGLAAFIDQYHQDTGLKGDQLWRTPLTRIAQNIKTIWYQCLLRVSLLIFWFWMAIGLIAASAVDGLMQRKIKQHEFTAPSTGYFRVALWSGILVAILLELYCITPALISNEIFPLFPLFAAVIIGWLLKTTLANSAKNM
>NC_008573.1|WP_083848304.1|138327_138726_-|hypothetical-protein
MNQSAKTEKKGLIQQFKEAPVAVRAFFALIVVAVACSLLFAGEASAVSASGATLHTFFDQMWDEVKGLMTGAPAKAIMGLSILGTIAFSMIKPNLIGFLASVVIILVLANAPTTIDGSLTVTVEALKAGLVH
>NC_008573.1|WP_011711597.1|137971_138256_-|hypothetical-protein
MSEARFPKRCNGAIKVGTIHWDSIKLAVIVMVFGLASGHINLGIIAAITSMAVVETLFKKFGRGVLKHLLWVNGLWISKGPETLMSPAIRRLIK
>NC_008573.1|WP_011711596.1|137305_137962_-|hypothetical-protein
MLWKSKIKESYDNLNISNKNIGRSNLALSISVVLLLFMVMTKQTEVIVMPNDFKEPIVMNGNSVTQEFKIQWGLMIATIIGNITPKNAKFVIDRVTKMIPLELNPDEAEATMAAAIEEMALRGVSQKFVPSDAIYSSVTDYVWVVGEQTTISLKTGAADTTAYTFELKIGIRNGNPMILDIQQYPAAVNPAQREREILQGKNATTALDKDSVIKIESR
>NC_008573.1|WP_041413324.1|136040_137300_-|hypothetical-protein
MNKRPLSTAILLSLMIAPAFAADDDIYSLPTESVNPQRVPVLGTDFNQAEEKLQAELNSPYANQPLSIDTSKEIGTQTALSVSPNEQVLYQQPVTQPPSQQPMQQADHQQVPTYGGASPVNPTAISPANAGEVISRRDDSMDYLRKQYKSHQVIALKAGGTTTLPISLSTTNRIATSFKNAKITTSVPSDAALVYGEQGFVYVTPGVNAGAIDLIVEEDGAPETAVSLYLVPLNVPPVLVELTVSYNASQRNAALQAVSIYSENEAKELESAKQAERERITNNQPVADSHVDDVMTLLEVVAKAEVPAGYELLEGDTIPAEVRYPCDIRQMLPLYHEVKQRLIGSKLVVDIMEVRNDVNGLRSFRDEACMGPGREDVMAVGVLDKATLGPRESTEVYILRDRSYFERQMKVPRRSRVGG
>NC_008573.1|WP_011711594.1|134680_136039_-|conjugal-transfer-protein-TraB
MQALQDLKTKWLALPSNQRTIALIVILAIPAYLVAEAIFPSAPKTPVSSIPARAKPMFMSTMGSERLESTQTSGQLIAMRKKIQEREKAIDAQYTEQKASEKRIQQQVDTLQMSQLESQKRLETIAHQMQMLVEQQSKNAATARDSVSAKGARPENIAQQAPSLPSTEFSLDPMASLKSNVAMTPPASKTLTMNRGDVSLGKAAATGDEANVGNASTAKNQVAAKAKQAISQENTGSIKKTEKEPETWLSAGTVIPTVLLTGQHVPTSSSAQSNPAPVLLKIVDVGVMPNGFTIDLVGCTVIGAARGSASTRRVEIRAESISCIDQRGRAIEQPFIAAVQGQDGHSGIPAKLVTLYGEVVKQSFWAGIYGTGAQTLTQAATNRVSGDVVYDGTYFKNTATSSLAGGSSTAFDKIADFYLQLADEARPYLEMHGGIEGVDLIVQRGVSLKYKG
>NC_008573.1|WP_011711593.1|134134_134677_-|hypothetical-protein
MTTENVNSEKLEPTIGALAEPEQAAPAEVAQSVAEPTPATPAAPQGLSPVKMIMVMAGLVLLFGVMKFGMSFFGTGVSAEQTNTQSKIVVADLGEMFQQWSKESVNQADLSSAAQELGQLYFDMGYLVIDSSMTLRIPEEFKMDIPRAEVLLRIKQIRSEYQDEGKVPPSPQQLLQMAGN
>NC_008573.1|WP_037426906.1|133864_134128_-|hypothetical-protein
MADMEIAQALLAASEQNQLAQIIETHNLGELPHSLRLAINIFEINADNIQQHPEAAQSLLRCPIPTTFGETESIRRTILSLLTQKHS
>NC_008573.1|WP_037426941.1|133552_133804_-|hypothetical-protein
MGLRQQRPIRVHLRRHFSESKSELTRAIERSQEIYIIALCLGALDCLYWQAMGLGEIKLAKGISRLLAKSYQHHPIRVSSTPI
>NC_008573.1|WP_011711602.1|144180_144900_-|hypothetical-protein
MSQTNENPQVASKRTQKPSAVRQVQQRKFILKEMDFKSSAIQQLFSNDARQQNIKYSIARIAGLFVLTSNNKEIRDRLDAWFVAEQEEAVRRSTLLNTIHNNELSTSLGNNADFDVVTPESFRVTFQIEHPIYWRVIDVISQIDESIAAIENLWLAGVISESVSNNSRGIAMNTMTRFFGRMRTVATDSADRKGGIYSLDAYNKIMQTITRNNPDDQSANDDSGAEEIEQDSGNLVVNA
>NC_008573.1|WP_083848305.1|144909_145401_-|hypothetical-protein
MNDYSGTSGSSENGKPVPALGFQLVNTIRSLEGLIEAAQFQAKVIVDDYWLKWRSSNRQLRSDDGGKFSGGEMAPRVVVKNEKVYLVWTRYRPGRVGNISKSWGDDVKPTQRGYTLDQLTRKSPEWEARMIEDTENRLAPLRETLECLHEAKVKLRRIERKQS
>NC_008573.1|WP_011711604.1|146056_147124_+|hypothetical-protein
MNNPVIITVDVGYGTTTCVHKESLGNYSVKTFPSLPIPIKSDINLGLAGEERDVTNVEVDGITYEVGSDVGTSVGSRNVRVLNTESFITSDRYKALLFGALSFLGKSNHIDIDVLVLGLPVSVMFRKDELAKIYTGTHQITPSRKVTIRQVLVFEQPLGALMSFLRQGGNERFAQCKDKTMLSIDPGYMTTDFITSKGLKVSPNRSGDSETGMSKVIGAVEVALRSQLEGFNIKQINPELIDQAFISGELKLYGKAMKFPKCDLFDVTSAIRSVTDEALTSVVNKVGDGQDIDLIIVSGGAAAVYLPSIQRAFPFHKIEVVDDSLTAVARGLQTAGEQFIRGAIARGDYQKLKAV
>NC_008573.1|WP_011711605.1|147132_147420_+|hypothetical-protein
MPKTIERHIRIADDTHPLIFAHLDQFGPKALTREMMTLMEFGLMVRQQGFNLGTVLAPKVEVESEREKVEADAEPRSPMEDDFDISDDFFVARET
>NC_008573.1|WP_011711606.1|147518_148514_+|conjugal-transfer-protein-TraF
MKVNKLMALIFAALALPVVAEDPANSNDGGNFYKQREKGWYWHEYIPEPEEKEEEEPIVPTPSSAPTETETSKNSVEAMSVKWFQENLPKAKELALNTGKPEDVKRYLYIQRAAIDRANQFAATYISEQMFDPYLDEGLRRPENDVTLQTFKGAQSENQWKLIEAIGKKATLIYFYGSQCPYCAKQTPYLIRLAKEYGWSIMPVSLDGGTVPNDDFLALGDYRVATSDMAQRFDVLATPTLYLTNNTGDYFLLGSGLIGMDSLSERIIELASREKIISQAELNNVKQVRALYMTDAEAKVDTQKVYEDPDYLINKMRNFMLGKPDSEGEQE
>NC_008573.1|WP_011711607.1|148510_149905_+|conjugal-transfer-protein-TraH
MKKKVIVALLCCPLSATAASGLNNLWDQMLSASSGATSYSGAKRDGFSLGSASVRIKTTNEKIVAVRAPYLQSSCKGIDFFGGSLSIIKREELVQMARSIAAAAPMYAFQLAMGMLCPDCNAILADLAKRLNALNDFISKDCEEWADLAEQQWPSLQVQSDRKMWKAYNDSAGAWFDSFASSTVERSSIDSHSKAAQLTQAGDEMQFNSVYETFMQSETTVPTLSSDRHVVAQMLMTILGTEIYKFDSTLTASASAGSDAVSQSFSPQVSLKDLYQPQATTSMAVAKQMVVCEQAQFADSKCLSAKVATVPISDPRYLDSFYRFYGDAICGLVDSNLVGSSIMAIYAQKGNYSDSQAQIMANMRSEFEDIIKRASTVNVINTGNCKFISEAMAIDATQQLLDGLRIAASKMASTDKGQRGAFSSKLLEKIDALSLEREEMANRRREMEQELLSQINFSASMRGK
>NC_008573.1|WP_011711608.1|149908_155239_+|conjugal-transfer-protein-TraG
MLTIYSLGDLDLLIKMAQSAELAFSDGGIANSNLIAIGLGITLLVSAFKQIFAPDKFHVKEFFIALFTYMFLFTPKVDFYVESVRTGEVSQSFTLPFGIVAPAALATMIGGGFAQGMSEAYASITPDYDTEPGTNIDPLKALLKARFVGTSEADASYRSVGENLGAYFKNCYFEDIRNGKNPTGQAVQEVNHDESVTGAFDFTKLKVTSGSWYTPYYDVNTKSYTKITCTDAYAKLGNDLSDSSPWAEEMKGRAAIMYNMAEESQVEKVFESLTGDTANLINLYRANFVKAMMAKVGASYVELEPSERLAFQQEFDAIQQRHLSQAAQSSFFLETAPALITWFECFIFLIAPLLPVFLTFGSKGIMMAGKLYSFLLAVNFWPIIQVGVNMYTNHYFNKLMCSLPGNDSSSVQNCMIAPSMRNWSIDSLGGMDSAYTTLETFVSQAAIIQTMVPALAMMIVFGGVHTMMGATQKAQMGANMDAKGVSPQTVNSDGKTVSSGGYSQTMTSNGEWMESRQGAGNMAGLSTGGATYNALSAGATALSKAISDVSSITQSDTAARQAVGAANERLITSVGTGNVFQNGAQAGLGYEETLGFAATSLIGKGSEHGSSEVRAKILNTLASMNETEANEFATSFGVGLALGHSGSSKTESAKGINPVSTLLSTLGVNAKADATWSQTQSTIRSQLQSEGETNTSTLTSAEKESVAKAYQEQNTEANRKTYNSTQVDTSSAVYQDAKSRDEAVSQQRTTGEQLQQAEARSRELRDGVTSSGSAGSSANIKFGELISTNNSGLFTKTDTLRQIAQNAADGAMRGKYGNDWDAATNGLDTLDFISTMSALDAKAAGAGAGTAEEAKLNAMKQDYAANQSLYDVARDNNALQGIVNNSQTLMSANGKPIPLNDVGSIADRSVGMLSDIMSRTQSDPMMADAVRHLTVGSAIGFAAVNGTESANTTAMAVGDRFTQIGQSQISDYDKPALTSEQQKFKSDQEAGIGATGQRINKEGQKVEDEAAQRAKDFKPSKEDYDNQHLESPAKWTPEQQHKLDKLDRNIDDLWKKLEESQKVGGTAGVNNIIDTLGQELKSGTFGAVSPKVVDDVMKVMKSAAESPAELSRVLNDFANRQSSYYTGDHASQVAPVIAAMANAADGLLGKAIDSGQLSPSEKSVYQNAQQAFGRVNEAYASQDIVDRQSHAGNAAAQVISTLGSDKDMKTQKAVALASVIAADGDTKNPLPSAEFSRLQRDGNPSKDEVLDMKLVTDRAQDIVTQAMAQEGLSEPVRERLVQTLQGLQDFDQKLSTSRNSDAHTRTGTSYDHATDYDDATKNSPVMSGLSSSERIHLMDGFHRIGEGEGSTQSRMENTRFNGQGANMQLESIANKMSPEDKAAILGSLPDSVRANVERGMELTASNSSPSSEKFPIGETQFPSSPVASAQGDAVSQQGAAPATTAQGDAVSQQGAAPAATAQGDTVSQQGAAPATTAQGDAVSQQGAAPAATAQGDTVSQQGAAPATTAQGDAVSQQGAAPAATAQGDTVSQQGAAPATTAQGDTVSQHGAAPAATAQGDTVSQHGAAPATTAQGDAVSQQGAAPAATAQGDTVSQQGAAPATTAQGDAVSQQGAAPAATAQGDTVSQQGAAPATTAQGDAVSQQGAAPAATAQGDTVSQQGAAPASTAQGDAVSTASPERSEPEVRYVETPAENSTQSGSTVVENNPFAFDGNQAGFNFSVMGGFGNNVQPSNVSYNSVDLVGGVAASGHSVAGSSSSGGPSMDTSNSNVPTMER
>NC_008573.1|WP_011711609.1|155349_156240_+|hypothetical-protein
MKIFSLLVAACFSSVSIANAEEITVTESATDLWGVSYLSGKPVGRKMSLNNFKADLIDRAARKAIYSKLNPTAQQGVLIRSSSNDESVLHEVVTASSYMYSVNSVEFGYNVLPAGIEIKADITVSIRPYDESMLLKQLETDVHLSSQNRRHWTPIDGRYLKEKEDRIYGTPNSLFVITGNHENTMPSDYQFVSTETFLDYWVIRYKVMLADAYGRRGVKGSFLGTVDDVSSRPDKVFDAVLSHKPQQQIKYPDQQMIKRMDGALILVGKKVVSVNNLKNTQVPIGMSGTIQAMPSK
>NC_008573.1|WP_140374528.1|156289_156799_+|hypothetical-protein
MLLTNTDVIAGEFDYRGNGVSRLIVHGFDDADSLAHTGSIKSIQYALYDALMQSGRKIEKPWEVVMVLNLSPYEVTGSDLAFEQGVIEGQSEPIFRIVASKTITVRGDVIDRAYKNVLRLEQNQEFQKAFDQYSKAMNHKNAGEMSRIFMSFEALDKLGIYLEHTISSY
>NC_008573.1|WP_011711611.1|156886_157792_-|hypothetical-protein
MNSNNVLKFPVTAPLTHVPKDNIKKPEQVASEKMITSRKGVQFLSYEDWVEYIKDLGVTSRAEWLRYVEANEIPPYLPVSPSLFYGRRGLWQGWGVLNPNAPVIPQSEEDDIHSRGGVFASYETSSEYAKASGIKTMAEWVEYHQKNEKPKNIPSDPRSFYTRKGMWQSWNHFLGNEEPYDYHQKGTLEKVKRWFKENNITTSTQFLEMAANKQLPDFVPAAPTMLFGVKFKDLLAKRQKYVTFNQASKEVKKWNCSSMLEFRAKHRELKASGNKLATQIPSAPDRVYKDLWKGWTNFLQG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_008573_1	1.1\|141907\|52\|NC_008573\|CRISPRCasFinder	141907-141958	52	NC_008573	Shewanella sp. ANA-3 plasmid unnamed1, complete sequence	141907-141958	0	1.0

1. spacer 1.1|141907|52|NC_008573|CRISPRCasFinder matches to NC_008573 (Shewanella sp. ANA-3 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ccattaggctatgacagcttgattctggtggtacttcgttaggcattaacgg	CRISPR spacer
ccattaggctatgacagcttgattctggtggtacttcgttaggcattaacgg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

195316 : 252246

Salmonella_phage(36.36%)

transposase,integrase

attL 211260:211274|attR 252782:252796

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011711642.1\|195316_198304_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.0e-62	23.1
WP_040133153.1\|198420_198987_-	hypothetical protein	NA	NA	NA	NA
WP_040133152.1\|198983_199379_-	hypothetical protein	NA	NA	NA	NA
WP_011711644.1\|199402_199837_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_011711645.1\|199856_200657_-	EAL domain-containing protein	NA	NA	NA	NA
WP_011711646.1\|200668_202324_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	3.6e-37	28.2
WP_007642843.1\|202361_202781_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_007642844.1\|202784_203063_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_007642845.1\|203115_203463_-	mercury transporter	NA	NA	NA	NA
WP_040133151.1\|203556_203943_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_011711648.1\|203945_204968_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_011711649.1\|205172_206222_+	DNA-binding protein	NA	NA	NA	NA
WP_011711650.1\|206335_209230_-\|transposase	Tn3-like element ISShes11 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.5
WP_000147567.1\|209232_209793_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_011638892.1\|209918_210998_-	signal peptidase II	NA	NA	NA	NA
211260:211274	attL	NA	NA	NA	NA
WP_011638890.1\|213485_213926_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_011711651.1\|214516_215089_-	peptide methionine sulfoxide reductase	NA	NA	NA	NA
WP_011711652.1\|215085_215586_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_011711653.1\|215588_216035_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_011711654.1\|216271_216787_-	DUF417 family protein	NA	NA	NA	NA
WP_011711655.1\|216924_217479_-	hypothetical protein	NA	NA	NA	NA
WP_000257537.1\|218567_219854_+	hypothetical protein	NA	NA	NA	NA
WP_002119794.1\|220471_221449_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.7e-18	35.0
WP_001281573.1\|221668_222331_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
WP_011711656.1\|222536_222782_-	hypothetical protein	NA	NA	NA	NA
WP_005403705.1\|222836_223277_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_011711657.1\|223308_223545_-	glutaredoxin	A0A088C3W5	Shewanella_sp._phage	2.0e-05	28.2
WP_011711658.1\|223572_224061_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_002123001.1\|224183_225119_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_011711659.1\|225121_225862_+	hypothetical protein	NA	NA	NA	NA
WP_011711660.1\|226702_227731_+\|transposase	IS30-like element ISShes10 family transposase	Q9MBM9	Staphylococcus_prophage	6.5e-45	35.6
WP_011711661.1\|227804_228281_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_001166628.1\|228688_229144_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001294653.1\|229215_229611_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000732275.1\|229626_229902_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522996.1\|229929_230355_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000209296.1\|230393_232079_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_001277466.1\|232096_232462_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087807.1\|232458_232695_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001446012.1\|232678_232798_-	hypothetical protein	NA	NA	NA	NA
WP_000993245.1\|232760_232973_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_041413367.1\|233940_234216_+	transcriptional regulator	NA	NA	NA	NA
WP_011711663.1\|234372_235905_-	nucleotidyltransferase	NA	NA	NA	NA
WP_011711664.1\|235901_236840_-	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	2.8e-26	37.1
WP_011711665.1\|236920_238486_-	SAVED domain-containing protein	NA	NA	NA	NA
WP_049796111.1\|238478_238964_-	hypothetical protein	NA	NA	NA	NA
WP_011711667.1\|238947_240675_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_011711668.1\|240676_241708_-	nucleotidyltransferase	NA	NA	NA	NA
WP_011711669.1\|241908_242253_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011711670.1\|242262_243072_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_041413370.1\|243671_243860_-	hypothetical protein	NA	NA	NA	NA
WP_011711671.1\|243929_244595_-\|integrase	site-specific integrase	K4K327	Caulobacter_virus	3.2e-05	27.6
WP_011711672.1\|244732_245080_-	hypothetical protein	NA	NA	NA	NA
WP_049796112.1\|245123_245360_-	hypothetical protein	NA	NA	NA	NA
WP_011711673.1\|245591_245894_-	hypothetical protein	NA	NA	NA	NA
WP_041413373.1\|246002_246305_-	hypothetical protein	NA	NA	NA	NA
WP_011711674.1\|246301_247450_-	DGQHR domain-containing protein	NA	NA	NA	NA
WP_011711675.1\|247613_249209_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_011711676.1\|249258_252246_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	9.3e-68	23.6
252782:252796	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_008577

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_008573

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection