CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015459	Pusillimonas sp. T7-7 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	1	0
NC_015458	Pusillimonas sp. T7-7, complete sequence	2 crisprs	csa3,DEDDh,PrimPol,RT	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4492 : 34085

Pseudomonas_phage(12.0%)

tail,terminase,head,protease,integrase,portal,capsid

attL 3323:3337|attR 38200:38214

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3323:3337	attL	NA	NA	NA	NA
WP_013744763.1\|4492_5569_+	hypothetical protein	Q9MC69	Pseudomonas_phage	1.2e-28	40.6
WP_148256083.1\|5594_6323_+	ERF family protein	B5WZW4	Pseudomonas_phage	3.0e-68	77.6
WP_013744765.1\|6322_6958_+	YqaJ viral recombinase family protein	F8TUK8	EBPR_podovirus	2.4e-18	34.7
WP_013744766.1\|6957_7377_+	single-stranded DNA-binding protein	W8EK97	Geobacillus_phage	2.0e-08	32.7
WP_013744768.1\|7668_7827_+	hypothetical protein	NA	NA	NA	NA
WP_013744769.1\|7805_8147_+	hypothetical protein	NA	NA	NA	NA
WP_013744770.1\|8130_8373_+	hypothetical protein	NA	NA	NA	NA
WP_013744771.1\|8369_8663_+	hypothetical protein	NA	NA	NA	NA
WP_013744772.1\|8659_8911_+	hypothetical protein	F8TVH0	EBPR_siphovirus	1.4e-14	47.1
WP_013744773.1\|8907_9414_+	hypothetical protein	NA	NA	NA	NA
WP_013744774.1\|9406_9934_+	HNH endonuclease	A0A2R3UAC5	Siphoviridae_environmental_samples	7.7e-26	41.1
WP_013744775.1\|9930_10608_+	hypothetical protein	NA	NA	NA	NA
WP_148256077.1\|10604_10823_+	hypothetical protein	NA	NA	NA	NA
WP_013744777.1\|10911_11151_+	hypothetical protein	NA	NA	NA	NA
WP_013744779.1\|11338_12322_+\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	1.7e-71	44.1
WP_013744780.1\|12387_12690_+	hypothetical protein	NA	NA	NA	NA
WP_013744782.1\|12810_13056_-	hypothetical protein	NA	NA	NA	NA
WP_041683491.1\|13052_13523_-	lysozyme	A0A088FRS5	Escherichia_phage	1.8e-34	50.6
WP_013744784.1\|13621_13831_-	hypothetical protein	A0A2P9HXL2	Yersinia_phage	5.4e-15	58.0
WP_013744785.1\|13970_14639_+	GIY-YIG nuclease family protein	M1HHX3	Paramecium_bursaria_Chlorella_virus	4.0e-11	39.3
WP_013744786.1\|14687_15140_-	hypothetical protein	NA	NA	NA	NA
WP_013744787.1\|15207_15654_-	hypothetical protein	A0A0K0KVS2	Prochlorococcus_phage	8.3e-05	58.3
WP_013744788.1\|15656_16700_-	hypothetical protein	F5B3N8	Synechococcus_phage	4.2e-07	29.1
WP_083812513.1\|16753_20620_-	hypothetical protein	Q2NPH0	Xanthomonas_virus	3.0e-58	24.3
WP_041683493.1\|20699_21086_-	hypothetical protein	Q2NPH1	Xanthomonas_virus	2.8e-17	37.4
WP_013744792.1\|21244_21712_-	DUF1833 family protein	NA	NA	NA	NA
WP_013744793.1\|21708_22056_-	hypothetical protein	A5H1M2	Xanthomonas_virus	5.1e-10	36.8
WP_049790444.1\|22055_24083_-	hypothetical protein	A0A0U4JEA4	Pseudomonas_phage	4.4e-53	54.8
WP_193383962.1\|24515_24773_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_013744798.1\|24793_25090_-	hypothetical protein	NA	NA	NA	NA
WP_148256078.1\|25099_25666_-	hypothetical protein	NA	NA	NA	NA
WP_013744800.1\|25814_26159_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013744801.1\|26155_26899_-	hypothetical protein	A0A1P8DIK4	Virus_Rctr197k	5.4e-17	26.1
WP_013744802.1\|26982_27420_-	HK97 gp10 family phage protein	Q6JIM3	Burkholderia_virus	9.8e-19	43.9
WP_013744803.1\|27416_27743_-\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	9.0e-17	47.3
WP_013744804.1\|27742_28162_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_013744805.1\|28162_28333_-	hypothetical protein	NA	NA	NA	NA
WP_013744806.1\|28385_29600_-\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	3.6e-95	46.5
WP_013744807.1\|29662_30385_-\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	2.0e-53	55.6
WP_013744808.1\|30350_31646_-\|portal	phage portal protein	C7BGG8	Burkholderia_phage	6.2e-61	36.6
WP_049790446.1\|31645_33154_-\|terminase	terminase	F1C585	Cronobacter_phage	7.2e-186	67.4
WP_013744810.1\|33165_33639_-	hypothetical protein	A0A0F7L441	uncultured_marine_virus	2.4e-31	51.7
WP_013744811.1\|33749_34085_-	HNH endonuclease	A0A1X9I6D0	Streptococcus_phage	8.9e-20	59.2
38200:38214	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015458

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CRISPR-Cas detection and classification

Crispr_ID: NC_015458_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015458_1

973254-973340

Orphan

Consensus_repeat	Method
CCTTCACCTGCCTCGGAGAATGCCCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015458_1

>merge|NC_015458|1|973254-973340|CRISPRCasFinder
CCTTCACCTGCCTCGGAGAATGCCCATGCAAGCGCAGTGCGCAGGTTGCAGACCCGTTCACCTTCACCTGTCTCGGAGAATGCCCAT

>NC_015458|1|1|973254-973340|CRISPRCasFinder
CCTTCACCTGCCTCGGAGAATGCCCAT	GCAAGCGCAGTGCGCAGGTTGCAGACCCGTTCA
CCTTCACCTGTCTCGGAGAATGCCCAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015458.1\|WP_013741949.1\|980298_980643_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NC_015458.1\|WP_041682539.1\|961194_961431_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NC_015458.1\|WP_013741939.1\|971428_971833_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NC_015458.1\|WP_049790264.1\|970720_971290_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_015458.1\|WP_013741934.1\|965880_967194_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273327
NC_015458.1\|WP_013741946.1\|978712_979324_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NC_015458.1\|WP_049790262.1\|964701_965028_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274649
NC_015458.1\|WP_158306418.1\|979903_980302_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NC_015458.1\|WP_158306417.1\|967194_970128_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226418
NC_015458.1\|WP_083812409.1\|963339_964638_-\|porin	unknown	unknown	gnl\|CDD\|238208
NC_015458.1\|WP_013741951.1\|982327_982699_-\|hypothetical-protein	unknown	unknown	unknown
NC_015458.1\|WP_041682993.1\|978234_978669_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_015458.1\|WP_041682541.1\|965165_965534_-\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NC_015458.1\|WP_013741941.1\|975209_975893_+\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NC_015458.1\|WP_041682540.1\|962654_963059_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
NC_015458.1\|WP_013741942.1\|975972_976248_+\|XapX-domain-containing-protein	unknown	unknown	gnl\|CDD\|369277
NC_015458.1\|WP_013741943.1\|976322_978218_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
NC_015458.1\|WP_148255992.1\|982803_984357_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_015458.1\|WP_148255885.1\|980734_982309_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NC_015458.1\|WP_013741929.1\|961593_962547_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
NC_015458.1\|WP_013741949.1\|980298_980643_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	8.93535e-58
NC_015458.1\|WP_041682539.1\|961194_961431_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	4.19066e-21
NC_015458.1\|WP_013741939.1\|971428_971833_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	2.62617e-05
NC_015458.1\|WP_049790264.1\|970720_971290_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	5.3016e-25
NC_015458.1\|WP_013741934.1\|965880_967194_+\|MFS-transporter	gnl\|CDD\|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.84921e-73
NC_015458.1\|WP_013741946.1\|978712_979324_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	5.6624e-142
NC_015458.1\|WP_049790262.1\|964701_965028_-\|hypothetical-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	3.14421e-14
NC_015458.1\|WP_158306418.1\|979903_980302_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.02318e-10
NC_015458.1\|WP_158306417.1\|967194_970128_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	4.9107e-73
NC_015458.1\|WP_083812409.1\|963339_964638_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	3.92787e-50
NC_015458.1\|WP_041682993.1\|978234_978669_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.20148e-13
NC_015458.1\|WP_041682541.1\|965165_965534_-\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	3.1124e-07
NC_015458.1\|WP_013741941.1\|975209_975893_+\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	1.58153e-66
NC_015458.1\|WP_041682540.1\|962654_963059_-\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	3.82962e-19
NC_015458.1\|WP_013741942.1\|975972_976248_+\|XapX-domain-containing-protein	gnl\|CDD\|369277	pfam07235, DUF1427, Protein of unknown function (DUF1427). This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.	2.99241e-43
NC_015458.1\|WP_013741943.1\|976322_978218_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	0
NC_015458.1\|WP_148255992.1\|982803_984357_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	2.50085e-122
NC_015458.1\|WP_148255885.1\|980734_982309_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	7.42005e-122
NC_015458.1\|WP_013741929.1\|961593_962547_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	9.85884e-43

>NC_015458.1|WP_013741939.1|971428_971833_-|nuclear-transport-factor-2-family-protein
MASHLSGSILPQRVVQFIEATNAGELSRILEVFSADSIVNDQLQQWCGLAELKKWAERDVIGQQLSLRPTHCIQHYGHCVVAAHADGKFDKRGLPDPLEVLLYFTLAEDKIVQLIILRDLSGTSPFDASLHSSA
>NC_015458.1|WP_049790264.1|970720_971290_-|helix-turn-helix-transcriptional-regulator
MNNRTVLATKAYQQSNQSGFALTSTLLELLTVAQSKAEVDHQATKACLSRATALLEASLERNVSPKAESSFRGGLPRWQAKRLTTFIEDNLEQPIRSPDLIALTGLSTGHFFRTFKETFGRAPFAYIAEQRIERAQQMMLTTNHSLCQIALDCGMCDQSHLTRQFRQLVGITPGEWRRAHASGSLESTP
>NC_015458.1|WP_158306417.1|967194_970128_-|winged-helix-turn-helix-domain-containing-protein
MENNHLHPRPYVPEGDEIVEFGPFRLHVAGRLLQRNEVAVKLGSRSLDLLIALVERAGDVLSQRELIARAWAGLVVDEANLRVNIASLRKCLGEGKDGARYVINLPGRGYSFVAPVTRVRSESSSRKPEATRSPDFRSASQQPVSAPEHSLPEQLGRLIGRDVSVRGLVELLTNHRFVSIIGPGGMGKTAVAISVAHTMLDAFGGAVYYVDLASVTDASVVPSAIASVLGLKVQVQDPKPSILAFFGARRALLVLDNCEHLIDEIATLAEWLYKSAPQTHLLATSRELLRVEGEHVHILPPLDVPPVSDGMTTSDAMAFPAVQLFMDRVAASGVQETLTDEMAPLAVEICRKMDGIALAIEWAAGRVRSHGLCGTAELINSRFNLLWQGRRSAPPRHQTLQAMLDWSYNLLSESERRALYRLSVFVGPFQLAAAQRVAADAVFTEVEVAVAIASLIDKSLLSPSMLNGSSHLRLLDTTRTYASAKLAGSGEVNSVSRKLAEYLIEQFNRSSDHENERRAADRDVMLVGNMRTALAWAFSEAGDGELGVLLAALAAPLFLRLSLLDECHRWCQAALSQLGSQEDSETHLILQDALAISALFTRVDRDDLRNLIERGLNLARKFDDHERELGLLAGQHIVMSHLGCFGEAVEVSWRSLELARRVGSPAGIIMSEWMLGCAYHLAGDQAGALCHTEEGFKQAAAHGEMNVDRLGFAHRTRALIILARALWLSGAADRAAEVARQAVEEAESDERPMSMLVALLYASTVFLWRGDLEESAALANRLTQHVGRYSFGTNAVFGIALSGEVALLRGEFRTAANKFREALGTLRTEKRHNVTTTVNRSMSAALLECGEILEAEAMITAAMEGAEARHESFNMPELLRTRAQIGLVSGRLDPRATEVMLWHSIELASCQGALSLELRSAMALGELLASEERTEEAYSILAEVYHRFTEGYETRDLRKARQLIEAWRPTIPFAKST
>NC_015458.1|WP_013741934.1|965880_967194_+|MFS-transporter
MQFDEIRTQLQSRPMTRYQILTVAIAMLVHMTDGFDLLAIAFAGPAIDREWMLGPERLGELFSAGLLGMAVGAFGLSWLADAYGRRTATLINLTMITIGMTVAAFSTSFYMLLAARVVTGLGVGAMNAAVGSLVYEFSSKQRREVSIGFVAGAYSFGTIMGGIVSVWLLTIGWRAVFGFGAVLTALLIPVVYCRLPESLDFLVGKQPRNALSRANRELARLGFEPLAELPTKKIVNDSGRGSLLDVVRPPVLISALLACLGYFGFSLSQYFILNWMPRLMVDAGYTDAGAISFSIITNIGAIVGCAVVGIFTAKWGVRMVTVTMLVITAVAIAAFGTLPLEAVGLIRTSSFFIGFASFAAAIGVFSIMASGFPAHVRATGIGLSFTAGRFGSAIGAYLGGFLLAIGFERPELCVILALPTIGAAIVISFLGKRNIAR
>NC_015458.1|WP_041682541.1|965165_965534_-|DUF4148-domain-containing-protein
MKTFASLLLISASLAGPAAFAQGNETRTLTRAQVVAELHAARAAGQLSVGESDYPPAIQHTSSLTRAQVIAELQAAQAAGQLSVGESDYPPVRNQTSSVTRAQVVAELQAAKAAGQLIEPGA
>NC_015458.1|WP_049790262.1|964701_965028_-|hypothetical-protein
MAELASASCPVIAMFIETILYTATATGGRATASDKVLDAQLSTSLELSDVEYPGTNPAQLFAADYSACLLDALKFGANNLKITQFRTSPLPARPESAKSPQASLLQPN
>NC_015458.1|WP_083812409.1|963339_964638_-|porin
MNTTTRTTAARLLATSLLTGFTVYAVSGDTHHDDRARKQLGLRRHQQSYNQKRRRYCVCLPKLDILAMKKSILALILLGAPLLAHGQSSVVLYGLLDGGIQHQHVKIDNFGKATRTGMSQGVRAGNRWGLKGSENLNEDLKVIFTLENGFKLNDGSASDARRTAFTRQAFVGLSSETLGTLTLGRQYNSGFTYFGTFGAFGTSYGLAGISRSFSSALVRYDNMLKYETPVMAGFKATAGYSRDAGIGVELEDVKAFMAGMLYSSGPLRFTVNYDRVSNLLDQHGLGTGALKAWNAALSWNFDVAEITLSAGQDIDGRISNMVSSILAPLGNVNPAPNAVHIDGFKATNAALSASVPLDHGKLLANWMMSDSNLDVATAGGHGIATQQALSLGYVHELSERTSLYAVGTYMKNVAYIDQSSASEWTLGMMHRF
>NC_015458.1|WP_041682540.1|962654_963059_-|OsmC-family-protein
MTIKLSRSNLGSFRQLLQIDQHELIADARLDQETDSGPNPHDLYDAALAACKAITLLMYAEQANIPLDDVHIKIDRDSSEERSGKYHLQVDLVLDGKLDSAQKSRLEKVAAKCPIHKLMTVATTTITTSCEVTG
>NC_015458.1|WP_013741929.1|961593_962547_-|alpha/beta-hydrolase
MNTTTRIMTASLLATTLQAGVTAYAAQSASPAQIAAEAIVDGNYIVTAEGVRLYYKDWGPKDGPVVTFSHGWPLNSDSWESQMIFLADEGYRVIAHDRRGHGRSSQPWDGNDMNHYADDLAAVIQALDVEDVTAVGFSTGGGEVARYIGRHGTSRIKKAILVSAVPPLMLQTADNPNGLPLEVFDGIRKASLENRSQLYLDLASGPFYGFNRPGAKLSQGLINSWWSQGMQAGHKNTYDSIAAFSATDFREDLKQFDVPTLVIHGDDDQIVPIDIAGKASAAQIKEAKLIIYPGAPHGLTDTHKDRFNQDLLNFLKQ
>NC_015458.1|WP_041682539.1|961194_961431_+|helix-turn-helix-domain-containing-protein
MSDFQPVREACDFAGGVTALAKRLGLPPQVIHNWAAGKRPVPVIRCVEIEELTGGAVTRKQLRPDDWYQIWPELRGTD
>NC_015458.1|WP_013741941.1|975209_975893_+|hydrolase
MTNPKLELLTPQNSQLIFIDQQPQMAFGVQSIDRQTLKNNVVGLAKAAKAFSIPTTITTVETESFSGHTYPELLEVFPENELLERSSMNSWDDQNVRDALAANGRKKVVVSGLWTEVCNISFALCAALEGDYEIYMVADASGGTSVEAHNYAMDRMIQAGIIPVTWQQVLLEWQRDWANKETYDAVMAIVREHSGAYGMGADYAYTMVHKAPERVQHGKRIGPNPAK
>NC_015458.1|WP_013741942.1|975972_976248_+|XapX-domain-containing-protein
MRLYLFSLSAGVLIGVIYSLLTVRSPAPPLVALIGLLGMLVGEQVIPVGKQLLQGTAFNTACAKTQATDHVFGQLPGRNQIVQVQKSDYEA
>NC_015458.1|WP_013741943.1|976322_978218_+|amidohydrolase
MAHSTPDIVFHNGRITTLDPSNPVATAVAVADGKFLAVGSDNEVLALANSATRLIDLGRRSVLPGLFDNHTHMVRGGLNYNLELRWDGVRSLADALDMLRRQVAITPTPQWVRVVGGFTEHQFAEKRLPTIDEINAIAPDTPVFLLHLYDQALLNGAALRAVGYTKETPEPPGGEITRDANGNPTGLLLAKPNAMVLYSTLAKGPKLPFDYQVNSTRHFMRELNRLGITGVIDAGGGFQNYPEDYAVIQKLADEGQMTVRLAYNLFTQKPKEEKEDFLKWTSSVKYKQGTDYFRHNGAGEMLVFSAADFEDFRQPRPDLPPEMEGELEEVVRILAQNKWPWRLHATYDETISRALDVFEKVNRDIPLQGINWFFDHAETISDKSIDRVAALGGGIAVQHRMAYQGEYFVERYGAKAAEATPPVARMLEKGVKVSAGTDATRVASYNPWVSLAWMVTGKTVGGLRLYPQHNLLDRETALRMWTENVAWFSNEENKRGRIQAGQFADFIVPSKDYFGVPEDEISFLTSHLTVVGGRIVYGEDRFLSLDDNPVPAAMPDWSPTRLFKGYGAWGEPEGAGKNSLQPLRYQAIASCGCASACGMHGHDHATAWASKVPASDLKGFFGALGCSCWAV
>NC_015458.1|WP_041682993.1|978234_978669_+|DoxX-family-protein
MNNTNGNRLAAASRPALGSRAVRFIAYLGLCAAYLHGGIVKLTDFPGAIAEMNHYGLTPAPLFAVLVIALELGAPLMILTGRLRWLGALGLAGFTLLATGIALRYWELPVGQERFMAANSFFEHLGLVGGFLLVAWLDFQEKRV
>NC_015458.1|WP_013741946.1|978712_979324_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSSYGHIETMAYAVAEGAREAGADVVVKRVPELIPEEVVRKSGFKLDQSAPIATVQELPEYDAIIFGTPTRYGNMAAQMKNFIDQTGSLWVRGALVGKVGSVFASSGTQHGGQESTVLTFHPVLLHLGLIIVGLPYSFQGQMGVDEVMGNSPYGASTIAGGDGSRQPSKVELDGARYQGRHVAQIAAKLTDADDA
>NC_015458.1|WP_158306418.1|979903_980302_+|transposase
MSDSLCVVSSSQSPRRRYPVEYKRQVVQESMSAGASIARVALAHGINANQLHNWRWQYRRGDFGPISQGPLLLPVQIAAPPVSTPRQPAKIIDGQDRPAISGVELIFPAARVVIHGAADLPTLRCLIQALRE
>NC_015458.1|WP_013741949.1|980298_980643_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIGLPAGTRVWLAAGATDMRRGFDGLAATVQATLLEDPFSGHVFVFRGRKGDRIKVLWWSGDGMCLLAKRLEHGHFVWPSAESGAVHLTPAQLSMLLEGIDWRRPARTHKPTQV
>NC_015458.1|WP_148255885.1|980734_982309_+|IS66-family-transposase
MLNRTQLPDNIDALKALLSAKSAQIDAFEQERAAWQVEREALRQDKQGDQQEIARLTLLLDKLRRALFGQKSEKLAGQIDQLQLELEELHINQGERAQSIESAQAPASRPAPQRRPLPEHLPCEVHEHLPKESACPDCGGAWTRLGEDVSNVLEHVPASFRIVRHVRPRLACSCCERMAQAPAPSRPIARSFAGPGLLSHVMVSKYLDHQPLYRQCQIYERENVSLSESTVGDWVGGVHQLLRPLLEALRRHVFSADKLHTDDTPINVLAPGTGKTRQARLWVYARDDRPSGDTTAPAMWIRYSPDRRGIHPQTHLKDYIGILQADAFAGYDKIYESGRVLEAGCWAHARRKFYDIHVKSATPITTHVLDRIAALYKIESSIRGSPADVRRRVRQEHAKPLAIALHAWLREQLTTISRKSNTADAIAYAMNQWQALVRYLDDGRIEIDNNTAERALRGVALGRKNYLFLGSDAGGERAATMYSLLGTAKLNDINPQAYLRHVLSVIADHPVNRVDELLPWNVAL
>NC_015458.1|WP_013741951.1|982327_982699_-|hypothetical-protein
MPEVDHATINRNLILIVPKQAALDWIRSVDSQPIEGLTLDELRQEQEVYLISPDIINTPEQAEQWALQRFSVLFASFLDSWFTDQALWPKRRTRKMFLEWFEVQYHSTIWDLSTAPLEHEEWN
>NC_015458.1|WP_148255992.1|982803_984357_-|IS66-family-transposase
MKALLSAQLDETQALREAHRTLKEEHQELRVERDLLRQEKQFDKQEIQRLMLLLFKLKRQVFGQKSEKLLRQIDQLELELEELHINQGERAQKTESITPTARPAPARRPMPEHLPRDIQEHLPQAPACPDCGGAWQRLGEDISEVLEYIPSSLRVVRHVRPRLSCRCCDRMAQAPAPSRPIARSFAGPGLLSHVMVSKYLDHQPLYRQCQIFGRENVDLSESTMGDWVGGTHHLLRPLLDALQRYVFSSAKLHTDDTPINVLAPGAGKTRQARLWVYTRDDRPSGDTAAPAVWFRYSPDRKGIHPQTHLKDYAGIVQADAFAGYDKVYATGRVIEAGCWAHARRRFYDIHAKQATPITTHVLDRIGALYKIESGIRGSPPEVRRAARQEQAEPIVIALHAWLREQLPTLSRKSDTADAIGYAMNHWQALTRFLDDGRIEIDNNAAERALRGVSLGRKNYLFLGSDAGGERAATMYSLLGTAKLNGINPEAYLRHVLTVIADHPVNRVDELLPWNVTL

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Crispr_ID: NC_015458_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015458_2

3818727-3818837

Orphan

Consensus_repeat	Method
GGGCAGCAAGCCGCAGGTGCAGCGTGGGGGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015458_2

>merge|NC_015458|2|3818727-3818837|CRISPRCasFinder
GGGCAGCAAGCCGCAGGTGCAGCGTGGGGGCCTCCTTTTGCCGCCGGGCCGCCCCAAGGCAAAAAGCGCCCCCTTGGGGGGCAGCAAGCCGCAGGCGCAGCGTGGGGGCCT

>NC_015458|2|2|3818727-3818837|CRISPRCasFinder
GGGCAGCAAGCCGCAGGTGCAGCGTGGGGGCCT	CCTTTTGCCGCCGGGCCGCCCCAAGGCAAAAAGCGCCCCCTTGGG
GGGCAGCAAGCCGCAGGCGCAGCGTGGGGGCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015458.1\|WP_013744694.1\|3824594_3826241_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NC_015458.1\|WP_013744692.1\|3823105_3823921_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NC_015458.1\|WP_013744679.1\|3812009_3813146_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NC_015458.1\|WP_049790357.1\|3815082_3815964_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NC_015458.1\|WP_013744687.1\|3820073_3820598_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NC_015458.1\|WP_013744677.1\|3810752_3811259_-\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NC_015458.1\|WP_013744693.1\|3824047_3824434_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260133
NC_015458.1\|WP_013744689.1\|3821105_3822074_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NC_015458.1\|WP_013744676.1\|3810401_3810647_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl\|CDD\|319873
NC_015458.1\|WP_013744680.1\|3813176_3814193_-\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143624
NC_015458.1\|WP_013744685.1\|3817841_3818669_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NC_015458.1\|WP_013744683.1\|3815951_3816722_-\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213223
NC_015458.1\|WP_013744691.1\|3822615_3823122_+\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NC_015458.1\|WP_083812483.1\|3820563_3821085_+\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NC_015458.1\|WP_049790442.1\|3822103_3822619_+\|phosphatidylglycerophosphatase-A	unknown	unknown	gnl\|CDD\|368021
NC_015458.1\|WP_041683473.1\|3818888_3820058_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|237587
NC_015458.1\|WP_013744684.1\|3816728_3817721_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270291
NC_015458.1\|WP_013744681.1\|3814276_3815086_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NC_015458.1\|WP_013744695.1\|3826271_3826559_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_015458.1\|WP_013744678.1\|3811348_3811948_-\|RsmD-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223813

Protein	Function_ID	Function_description	E-value
NC_015458.1\|WP_013744694.1\|3824594_3826241_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NC_015458.1\|WP_013744692.1\|3823105_3823921_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	1.47748e-139
NC_015458.1\|WP_013744679.1\|3812009_3813146_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	1.44106e-164
NC_015458.1\|WP_049790357.1\|3815082_3815964_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	2.88256e-90
NC_015458.1\|WP_013744687.1\|3820073_3820598_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	5.88716e-65
NC_015458.1\|WP_013744677.1\|3810752_3811259_-\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	2.85284e-98
NC_015458.1\|WP_013744693.1\|3824047_3824434_-\|diacylglycerol-kinase	gnl\|CDD\|260133	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of diacylglycerol to phosphatidic acid. Escherichia coli DAGK participates in the membrane-derived oligosaccharide cycle (MDO cycle) by recycling lipids to restore phosphatidylglycerols that were used up in the biosynthesis of MDOs. DAGK also recycles diacylglycerols that are produced during the biosynthesis of lipopolysaccharides (LPS) back to phospholipids. DAGK is not the main source of phosphatidic acid in de-novo biosynthesis of glycerophospholipids. Escherichia coli DAGK has low activity as an undecaprenol kinase.	1.52752e-45
NC_015458.1\|WP_013744689.1\|3821105_3822074_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	3.2474e-125
NC_015458.1\|WP_013744676.1\|3810401_3810647_-\|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl\|CDD\|319873	cd10551, PsrB, polysulfide reductase beta (PsrB) subunit. This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.	1.48665e-05
NC_015458.1\|WP_013744680.1\|3813176_3814193_-\|CYTH-domain-containing-protein	gnl\|CDD\|143624	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup have not been characterized.	1.65547e-47
NC_015458.1\|WP_013744685.1\|3817841_3818669_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	5.75519e-55
NC_015458.1\|WP_013744683.1\|3815951_3816722_-\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213223	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.22859e-110
NC_015458.1\|WP_013744691.1\|3822615_3823122_+\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	4.87011e-64
NC_015458.1\|WP_083812483.1\|3820563_3821085_+\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	9.00653e-53
NC_015458.1\|WP_049790442.1\|3822103_3822619_+\|phosphatidylglycerophosphatase-A	gnl\|CDD\|368021	pfam04608, PgpA, Phosphatidylglycerophosphatase A. This family represents a family of bacterial phosphatidylglycerophosphatases (EC:3.1.3.27), known as PgpA. It appears that bacteria possess several phosphatidylglycerophosphatases, and thus, PgpA is not essential in Escherichia coli.	7.80415e-47
NC_015458.1\|WP_041683473.1\|3818888_3820058_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NC_015458.1\|WP_013744684.1\|3816728_3817721_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270291	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold. This subfamily includes putative periplasmic binding component of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.5092e-138
NC_015458.1\|WP_013744681.1\|3814276_3815086_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.24628e-91
NC_015458.1\|WP_013744695.1\|3826271_3826559_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	2.63053e-49
NC_015458.1\|WP_013744678.1\|3811348_3811948_-\|RsmD-family-RNA-methyltransferase	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	7.32748e-55

>NC_015458.1|WP_013744685.1|3817841_3818669_-|IclR-family-transcriptional-regulator
MPGNKTSTNTNDGRRSIQSVETGFPLLATLVDAGIPLNLRDLATRAGMTSAKAHPYLVSFIRVGLVQQDSTTGRYELGPFALQMGLVSLQRLDPVRVALPHLNQLAGQIGHTLALAVLGSHGPTMIHISQASYPVHVNMRNGTVMSMLHTATGRVFVAWLPPKVAQHYMERELDDQAVVTSATPLQPSPQALQKMVDEVRQAGLATALGNPLPGIDALSVPVFDHSGNIALALTSLGPSTLFDASPDGAIAHALKECATAISRQLGHRIHDSVEE
>NC_015458.1|WP_013744684.1|3816728_3817721_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MTHTKVLVLSALFAIFGATQAAYAQDDCPNRGDLDTMYCDANNDLVADTPTDPDKLKTPSTVVFTYTPVEDPAVYAEIFSPFTKYLSECVDRKVVFYQVQSNAAEIEAMRSNRLHVGGFSTGPTNFAVNLAGAVPFAVKGTADGFQGYNLILIVKKDSPFQKLTDLKGKKVAHTSPSSNSGNMAPIALFPDEGLVPGKDYKFLYSGKHDQSIMGVNSGDYDAAAVASDVFHRMAERGQVNEDDFRILYTSEKFPTSSFSYAYDLEPKFRDQMLKCFYDYRFPAEMKEAFDGADRFYPITYKKDWAIVRNVAKAGGESFTRSAYDKASKKK
>NC_015458.1|WP_013744683.1|3815951_3816722_-|phosphonate-ABC-transporter-ATP-binding-protein
MGATLSINSLVKEYRANQPVLKNINLDIAGEGLTAIIGPSGTGKSTLLRCINRLIDPTAGSIILEEDGACIDLAKIRGASLRQARRRIGMVFQEYNLVERLTVMENLLTGRLGYTSPLNAWRRHFEPADIQYAHSLLETVGLTGFANQRADALSGGQRQRVGIARALMQRPQLLLADEPTSSLDPKTSVEIMELLIEQGSAFSIPVIVNIHDVELAKRYASRIVGMSGGHIVYDGQAAGLGTGVLKEIYGGESWLQ
>NC_015458.1|WP_049790357.1|3815082_3815964_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MAPVVAPTSQPIAKPFALSPKVKWGVLLLVLYTIFAATQLGFSWDRFEAGLGHGAKFLARMFPPSVERLDVLWKGIAESLEIAVLATTLGIFLALPLSLLGARNLMPVWATWPARTVVSLCRALHPVIVAIIFVKAVGFGALAGVLALTVASIGFIGKLFTESIEEISLKQVEAVRATGASFANVIIFAVLPQVFARFVGFSTYQMDSNLRNSTMVGIVGAGGIGGTLFSAFQRFDYDFVCTILATIIAIIMVGELLAGVVRAILLDNVSLASLFGKKPHGSGSAPRPLEDDA
>NC_015458.1|WP_013744681.1|3814276_3815086_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MSARPQTFPSSWVRYTPGQRLLRFALYLIFVLAIVQSVRTIDVIPEFLYDAPTQMADLLHRMWPISWRSFPGSIQQALIETLHMATMGTILAIIMAVPVGLAVANNLTPNRTINFIARFILVSSRSINSLVWALLFIAIFGPGPLAGTIAIAFRSIGFIGKLLGEAIEDAQPGPIEALTATGASKGSIIAYGYWPQIRPAFWSIVLLRWDINVRESAVLGLVGAGGIGMALNSAMDLFQWDKVALILLLIFAIVIIAEVVITRARKTLL
>NC_015458.1|WP_013744680.1|3813176_3814193_-|CYTH-domain-containing-protein
MLERELKLYVPPASRAALEAELRNAGASTITLRARYFDTQDKQLAQAGMALRLRLEGSQWVQTIKAPGPDELTRIEINHPRIEPELDLSAYQNTTLESFFSGLSQPLLLRYETHIERLVLRQDSPDGAVEFAYDQGVIRSGQQELAVCELELEQIKGSVDHLFTLGRHWLERYQLILDFRSKAERGSLLSRTCLPDGRFADAAGQRPEPVFPPQQAKKITLTADMSLHQAYQLYANECLNHIVRNAMPLAAAEELNAGKELRAEYARNMHAGIRRLRSCWKLLSKRSNMDQTALDAELRPYTCLRQQKQEAVATAASVQLQSCLLAILKHLVEQAQPA
>NC_015458.1|WP_013744679.1|3812009_3813146_+|signal-recognition-particle-docking-protein-FtsY
MFSFFKKKTQKPADDAGQAAKEDVTDQDAVDQALPAAPPAAVEAPLVPDAPAESTEPAESAESAAVPVPAPAPAEKSSWLSRLKKGLSRTGQNLGGLFVGVKVDESLFEELETALIMADAGVEATEKLLTALRARVRKERLEDAGQVKTALRDILADHLAPLEKSFPLGKTAPLVVMIAGVNGAGKTTSIGKLANHFQAQGAKVLLAAGDTFRAAAREQLVEWGARNNVAVIAQDGGDPAAVAFDAVNAGRAREAGVVMIDTAGRLPTQLHLMEELKKIKRVIGKADGAAPHEVLLVIDGNTGQNAIAQIRAFDAALSLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGESLHDLQPFVAKEFAAALLGD
>NC_015458.1|WP_013744678.1|3811348_3811948_-|RsmD-family-RNA-methyltransferase
MKKHVVRIVGGDYRKTPIPVVDAVGLRPTPDRVRETLFNWLHHFWDGDYSKKRVLDLFAGTGALGFEAASRGVAHVQMVETHPPAIAALRALRTQLKADHVRIHAGDAQEALKRMTENSFDLIMLDPPFGQAWLDRLWAGLPAVLTPDGLLYIESEALIEPPEPFEILRQGKAGHVRYHLLRFAATQKTVNNPEISQQE
>NC_015458.1|WP_013744677.1|3810752_3811259_-|pantetheine-phosphate-adenylyltransferase
MITAVYPGTFDPLTRGHEDLVRRAAGLFDHVVVGVAHSHAKKPFFTVDERVEIAQEVLGHYSNVEVKSFAGLLKDFVREQNGRVIVRGLRAVSDFEYEFQMAGMNRHLLPEVETLFMTPSDQYQFISGTIVREIAILGGDVSKFVFPSVERWLHSKAKIRRDEQEQSQ
>NC_015458.1|WP_013744676.1|3810401_3810647_-|YfhL-family-4Fe-4S-dicluster-ferredoxin
MALRITEECINCDVCEPQCPNNAIYMGAEIYEIEPAKCTECVGHFDEPQCQVVCPVECIIFDLDHPEDQDQLMAKYQALTA
>NC_015458.1|WP_041683473.1|3818888_3820058_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MSNTRDADLDVVPSYDISPVPEIVAELRAGRMVILVDEEDRENEGDLVMAAEHVTPEAINFMVTHARGLVCLTLTEDRCKQLELPLMASRNGTRFGTNFTMSIEAAEGVDTGISAADRARTIQTAVARDALPSDLVQPGHIFPVQAVPGGVLVRAGHTEAGCDLTALAGLTPAAAICEILKPDGTMARLPDLMIFAREHGLKIGTIADLIQYRSEHESMVERIASRNVQTPWGEFQAVAYRDLASGALHLALAHGNITPETETLVRVHEPTSMLDILFQDATAHSWSVPDALKAIVASPAGLLIMLNCQGSAELLFDQFGAWNQQPATQAAAPDRESRYGLRTYGIGAQIMLDLNVGKARLLAKPRKMPSMAGFSLTITGYDSEPPSTP
>NC_015458.1|WP_013744687.1|3820073_3820598_+|6,7-dimethyl-8-ribityllumazine-synthase
MNPYTLSPDLNGEGLHIGIVRARFNEEIGLTELDACLAELAEMGVDERDVMVVSVPGALELGVTLAQMAETFEFDALIALGAVIRGETYHFEIVSNESASAISRVSLETGIPVANGVLTTDTDEQAEARAAEKGRDCARAAIEMANLVAALEPETDDDDEYGDDEDEDDDFDDK
>NC_015458.1|WP_083812483.1|3820563_3821085_+|transcription-antitermination-factor-NusB
MKTRTTILTTSRTQGAPAGGSARSNARSARRRAREFALQGVYAWLLRGDAGLQEAGEIDAHIRDDEEFHDADATWFKTLLHGVLREAPALRERFMPHVDRPLEELSPIEHGILLIGSYELVHHIEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKMAADVRSQEVQAAARR
>NC_015458.1|WP_013744689.1|3821105_3822074_+|thiamine-phosphate-kinase
MSAGPNEFDLIARYFTRPAPPGFLGVGDDCALLKHAPGYELATSTDLLIEGRHFFSDIDPKALGHKALAVNISDLAAMGAQPLACLLSLSLPDVDENWLRAFADGFYELAERTQCPLLGGDTTRSVAGVVINVTVLGQVKSGQALLRSGAKVGDDIWVSGTLGAADIALRLLQGRLPANNDLLKTIRHVLEWPEPPWAFAQSLVGVAHAALDISDGLMQDLGHILKASACGAELDYTALPLHPALQGLDAQLLQEAALAGGDVYQLCFTASPDQSARIQDLADQAQCRVARIGQIVAEPGLRVRGAGGALIELPAAGFDHFS
>NC_015458.1|WP_049790442.1|3822103_3822619_+|phosphatidylglycerophosphatase-A
MDPSAIHDAAPEPTPSWVFKSIPRVIAFGLGSGLLRPGPGTWGTLMGWLLWILVIGRLSDAVIAAVIIAAFALGCWACQRTGTEMGRPDHGGMVWDEIVAFWLVLWLTPDSLLAQLLAFIIFRLFDIIKPPPIHFFDGHFKNGFGVMWDDILAAAYSLLVIAVLVRFEVLS
>NC_015458.1|WP_013744691.1|3822615_3823122_+|CinA-family-protein
MNNDAVSLHAPNLGNLLIEHGWMFACAESCTGGLLAAAMTNTPGSSAWFDRGFVTYSNQAKVEQLGVSTDTLDRFGAVSEETAMEMAAGVLAATKLSQLAISTTGIAGPGGGTPGKPVGMVCFGFAQRVGKGVVTRAATKIFEGDRAQIRNASVAFALKTAIQIIEPR
>NC_015458.1|WP_013744692.1|3823105_3823921_-|orotidine-5'-phosphate-decarboxylase
MIFTQKLQQAWASSDSMLTVGLDPDPQRFPAELQGRSDAIFEFCRAIIDVTAPYACAIKPQIAYFSAQRAEDQLEALCSYILEHHPGLPIVLDAKRGDIGSTAEQYAREAFERYQADAVTVSPYMGFDTLEPYLSWKSKGVIILCRTSNKGGSDLQFIESADGTPLYLQVASLAAEKWNTNGQCALVVGATFPEEIAKVRARVGDMPLLIPGIGAQGGDIPATVKAGSNSLGTGMMINSSRAILYASGGDDWREAAALAARATRDAINAAR
>NC_015458.1|WP_013744693.1|3824047_3824434_-|diacylglycerol-kinase
MTPLDSPYKSKGGIGRLYNALRYSAQGLGAAFRHEAAFRQELLLVAVLAPVAIWLGRSFNEVLMLLGTLFFVLVIELLNSGLEALADTITLDDHPLIGRAKDLGSAAVMLSILFGTLVWLGVIASHFW
>NC_015458.1|WP_013744694.1|3824594_3826241_-|chaperonin-GroEL
MAAKQVLFGDDARVRIVRGVNTLANAVKTTLGPKGRNVVLDRSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKEVASKTSDNAGDGTTTATVLAQSIVEEGLKYVAAGINPMDLKRGIDKAVAVAVEELKSLSKPCTTSKEIAQVGSISANSDASIGEIIANAMDKVGKEGVITVEDGKSLDNELDVVEGMQFDRGYLSPYFINNPDKQVSVLEDPYVLIFDKKISNIRDLLPVLEQVAKSSRPLLIVAEDVEGEALATLVVNNIRGILKTTAVKAPGFGDRRKAMLEDIAILTGGVVISEETGMSLEKATLEDLGQAKRIEVGKENTIIIDGAGDSKSIEARVKQIRVQIEEATSDYDREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALIRAKAAIAKLKGDNVDQEAGIKLVLRAVEAPLRTIVANAGDEPSVVVNNVANGKGNYGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTTEVAVAEIVEDKPAPAMPDMGGMGGMGGMGGF
>NC_015458.1|WP_013744695.1|3826271_3826559_-|co-chaperone-GroES
MALRPLHDRVIIKRLDNERTTASGIVIPESATEKPDQGEVIAVGPGKRSDDGKVQPVDLKVGDKVLFGKYAGQTVKVDGEEVLVIREEEILAVVL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015458_1	1.1\|973281\|33\|NC_015458\|CRISPRCasFinder	973281-973313	33	NZ_LR594663	Variovorax sp. RA8 plasmid 2	123861-123893	9	0.727

1. spacer 1.1|973281|33|NC_015458|CRISPRCasFinder matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 9, identity: 0.727

gcaagcgcagtgcgcaggttgcagacccgttca	CRISPR spacer
cagagcgcaatgcgcaggttgccgacctcgtcg	Protospacer
  .******.************ ****.  **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

822385 : 829961

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013741808.1\|822385_823042_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	3.1e-56	57.2
WP_013741809.1\|823133_824441_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.3e-127	55.2
WP_013741810.1\|824592_827067_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	4.8e-219	51.5
WP_013741812.1\|827685_828078_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	1.5e-21	44.4
WP_013741813.1\|828088_828271_-	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	3.7e-12	48.3
WP_013741814.1\|828478_829177_-	hypothetical protein	NA	NA	NA	NA
WP_013741815.1\|829298_829961_-	transcriptional repressor LexA	A0A2K9V3G4	Faecalibacterium_phage	1.7e-17	44.8

DBSCAN-SWA_2

958695 : 1003383

Stx2-converting_phage(40.0%)

transposase,integrase

attL 955755:955770|attR 1006941:1006956

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
955755:955770	attL	NA	NA	NA	NA
WP_013741927.1\|958695_959898_+\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	7.2e-112	52.4
WP_013741928.1\|959926_960217_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	1.3e-06	43.6
WP_041682539.1\|961194_961431_+	helix-turn-helix domain-containing protein	A0A0N7IRE1	Acinetobacter_phage	3.3e-05	42.2
WP_013741929.1\|961593_962547_-	alpha/beta hydrolase	A0A0B5A484	Mycobacterium_phage	3.0e-12	25.6
WP_041682540.1\|962654_963059_-	OsmC family protein	NA	NA	NA	NA
WP_083812409.1\|963339_964638_-	porin	NA	NA	NA	NA
WP_049790262.1\|964701_965028_-	hypothetical protein	NA	NA	NA	NA
WP_041682541.1\|965165_965534_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_013741934.1\|965880_967194_+	MFS transporter	NA	NA	NA	NA
WP_158306417.1\|967194_970128_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_049790264.1\|970720_971290_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013741939.1\|971428_971833_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_148255883.1\|971944_974938_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013741941.1\|975209_975893_+	hydrolase	NA	NA	NA	NA
WP_013741942.1\|975972_976248_+	XapX domain-containing protein	NA	NA	NA	NA
WP_013741943.1\|976322_978218_+	amidohydrolase	NA	NA	NA	NA
WP_041682993.1\|978234_978669_+	DoxX family protein	NA	NA	NA	NA
WP_013741946.1\|978712_979324_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_158306418.1\|979903_980302_+\|transposase	transposase	NA	NA	NA	NA
WP_013741949.1\|980298_980643_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.4e-41	69.2
WP_148255885.1\|980734_982309_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.0e-138	49.0
WP_013741951.1\|982327_982699_-	hypothetical protein	NA	NA	NA	NA
WP_148255992.1\|982803_984357_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.9e-141	56.5
WP_013741953.1\|984487_984832_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.6e-40	68.2
WP_049790266.1\|984828_985266_-\|transposase	transposase	NA	NA	NA	NA
WP_148255993.1\|986294_987155_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_013741957.1\|987943_988570_+	hydrolase	NA	NA	NA	NA
WP_013741958.1\|988660_988957_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_013741959.1\|989103_989409_+	N-acetyltransferase	NA	NA	NA	NA
WP_049790267.1\|989392_989815_+	DoxX family protein	NA	NA	NA	NA
WP_013741962.1\|990004_991591_+	MFS transporter	NA	NA	NA	NA
WP_013741964.1\|991743_992634_+	pirin family protein	NA	NA	NA	NA
WP_013741965.1\|992687_993428_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.0e-20	35.0
WP_013741966.1\|993511_993913_+	hypothetical protein	NA	NA	NA	NA
WP_041682546.1\|993980_994997_+	hypothetical protein	NA	NA	NA	NA
WP_013741968.1\|995033_997085_+	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	2.6e-53	31.8
WP_013741969.1\|997145_998276_+	MFS transporter	NA	NA	NA	NA
WP_013741970.1\|998503_999445_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013741971.1\|999743_1000112_+	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_013741972.1\|1000317_1000707_+	RidA family protein	NA	NA	NA	NA
WP_013741973.1\|1000831_1001839_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_013741974.1\|1001969_1002917_+	alkene reductase	NA	NA	NA	NA
WP_049790266.1\|1002945_1003383_+\|transposase	transposase	NA	NA	NA	NA
1006941:1006956	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1066454 : 1074109

Moraxella_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013742039.1\|1066454_1068056_+	ABC-F family ATPase	A0A2K9L3Z8	Tupanvirus	4.8e-55	27.1
WP_013742040.1\|1068074_1068677_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	1.7e-21	36.3
WP_013742041.1\|1068745_1069126_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	5.4e-13	45.1
WP_013742042.1\|1069255_1070548_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	3.9e-71	38.5
WP_013742043.1\|1070698_1071763_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.4e-97	53.8
WP_013742044.1\|1071798_1072437_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_013742045.1\|1072547_1073306_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.2e-68	52.0
WP_013742046.1\|1073290_1074109_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.0e-32	45.2

DBSCAN-SWA_4

1197670 : 1206419

uncultured_Caudovirales_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013742164.1\|1197670_1198957_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.1e-166	73.6
WP_041682567.1\|1199052_1199532_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	5.2e-37	51.3
WP_013742166.1\|1199627_1200149_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	6.4e-25	39.4
WP_013742167.1\|1200204_1200546_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013742168.1\|1200607_1201366_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.3e-92	70.6
WP_013742169.1\|1201457_1203125_+	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.5e-11	28.4
WP_041682568.1\|1203139_1203415_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_013742171.1\|1203482_1204412_+	CDF family Co(II)/Ni(II) efflux transporter DmeF	NA	NA	NA	NA
WP_013742172.1\|1205012_1206419_-	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.7e-24	29.9

DBSCAN-SWA_5

2608883 : 2635573

Escherichia_phage(11.11%)

tRNA,transposase,integrase

attL 2630479:2630494|attR 2637189:2637204

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013743514.1\|2608883_2609855_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.0e-100	67.7
WP_148255931.1\|2609950_2612269_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_013743516.1\|2612318_2612891_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_013743517.1\|2612887_2613214_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_041683265.1\|2613257_2614079_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_041682722.1\|2614107_2615187_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	2.5e-07	38.5
WP_041682723.1\|2615256_2616531_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_013743521.1\|2616958_2618266_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.6e-64	37.7
WP_013743522.1\|2618281_2618422_+	hypothetical protein	NA	NA	NA	NA
WP_013743523.1\|2618500_2620063_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	2.8e-124	48.7
WP_013743524.1\|2620478_2622005_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_013743525.1\|2622333_2623593_-	MFS transporter	NA	NA	NA	NA
WP_041682724.1\|2623615_2623957_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_013743527.1\|2623980_2625021_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_013743528.1\|2625045_2626059_-	4-hydroxy-2-oxovalerate aldolase	E5EQ69	Micromonas_sp._RCC1109_virus	3.5e-43	31.8
WP_013743529.1\|2626070_2626970_-	acetaldehyde dehydrogenase (acetylating)	G8DDL4	Micromonas_pusilla_virus	5.7e-37	36.2
WP_148256039.1\|2627048_2628293_-	TRAP transporter large permease	NA	NA	NA	NA
WP_041683268.1\|2628368_2628884_-	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_013743532.1\|2629050_2630244_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_148255932.1\|2630290_2630740_-	hypothetical protein	NA	NA	NA	NA
2630479:2630494	attL	NA	NA	NA	NA
WP_013743534.1\|2630751_2631984_-	aromatic ring-hydroxylating dioxygenase subunit alpha	S4S2K9	Puniceispirillum_phage	3.5e-53	33.7
WP_013743535.1\|2632051_2632963_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_158306429.1\|2634275_2634494_-\|transposase	transposase	A0A1P8CWQ3	Bacillus_phage	9.2e-10	42.3
WP_158306430.1\|2634621_2634843_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	3.1e-13	50.8
WP_158306431.1\|2634996_2635110_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_013743538.1\|2635249_2635573_-\|transposase	transposase	NA	NA	NA	NA
2637189:2637204	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2995071 : 3010425

uncultured_virus(66.67%)

transposase,integrase

attL 3004912:3004926|attR 3013663:3013677

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148256050.1\|2995071_2996556_-\|integrase	integrase	NA	NA	NA	NA
WP_041682767.1\|2998211_2999729_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_083812509.1\|3000076_3001453_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.2e-40	30.8
WP_013743906.1\|3001633_3002077_+\|transposase	transposase	A0A218MNG9	uncultured_virus	2.2e-05	53.3
WP_013743907.1\|3002073_3002406_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_013743908.1\|3002484_3004089_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	4.7e-127	49.3
3004912:3004926	attL	NA	NA	NA	NA
WP_041682769.1\|3005143_3005572_-	hypothetical protein	NA	NA	NA	NA
WP_013743910.1\|3005608_3007618_-\|integrase	integrase	NA	NA	NA	NA
WP_013743911.1\|3007610_3009152_-	hypothetical protein	NA	NA	NA	NA
WP_013743912.1\|3009144_3010425_-\|integrase	site-specific integrase	NA	NA	NA	NA
3013663:3013677	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015459

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015458

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection