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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017337 Staphylococcus aureus subsp. aureus ED133, complete sequence 13 crisprs cas3,DEDDh,DinG,csa3,WYL 7 3 13 0

Results visualization

1. NC_017337
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_1 637135-637217 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_2 735365-735464 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_3 882599-882732 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_4 927681-927762 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_5 1025379-1025536 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_6 1060014-1060110 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_7 1940251-1940333 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_8 2235853-2235942 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_9 2355802-2356020 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_10 2419470-2419556 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_11 2569913-2570008 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_12 2796823-2796901 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017337_13 2826142-2826227 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017337_1 1.1|637159|35|NC_017337|CRISPRCasFinder 637159-637193 35 NC_017337.1 834288-834322 0 1.0
NC_017337_9 9.2|2355902|18|NC_017337|CRT 2355902-2355919 18 NC_017337.1 801840-801857 0 1.0
NC_017337_9 9.2|2355902|18|NC_017337|CRT 2355902-2355919 18 NC_017337.1 1185504-1185521 0 1.0
NC_017337_9 9.2|2355902|18|NC_017337|CRT 2355902-2355919 18 NC_017337.1 2495365-2495382 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 637124-637154 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 834385-834415 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 834443-834473 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 834501-834531 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 834559-834589 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 1043869-1043899 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 1394746-1394776 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 1470164-1470194 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 1470222-1470252 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 1470279-1470309 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 2371298-2371328 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 2390434-2390464 0 1.0
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 2826261-2826291 0 1.0
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 637218-637243 0 1.0
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 1668604-1668629 0 1.0
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 2390584-2390609 0 1.0
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 2390640-2390665 0 1.0
NC_017337_1 1.1|637159|35|NC_017337|CRISPRCasFinder 637159-637193 35 NC_017337.1 2390469-2390503 1 0.971
NC_017337_3 3.1|882619|39|NC_017337|PILER-CR 882619-882657 39 NC_017337.1 555077-555115 1 0.974
NC_017337_9 9.2|2355902|18|NC_017337|CRT 2355902-2355919 18 NC_017337.1 1831563-1831580 1 0.944
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 1668567-1668597 1 0.968
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 2826319-2826349 1 0.968
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 2191306-2191331 1 0.962
NC_017337_1 1.1|637159|35|NC_017337|CRISPRCasFinder 637159-637193 35 NC_017337.1 1043830-1043864 2 0.943
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 43271-43306 2 0.944
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 142871-142906 2 0.944
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 554963-554998 2 0.944
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 637236-637271 2 0.944
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 1668622-1668657 2 0.944
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 2131977-2132012 2 0.944
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 2390546-2390581 2 0.944
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 2390602-2390637 2 0.944
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 2390658-2390693 2 0.944
NC_017337_3 3.2|882678|36|NC_017337|PILER-CR 882678-882713 36 NC_017337.1 2524697-2524732 2 0.944
NC_017337_9 9.1|2355843|18|NC_017337|CRT 2355843-2355860 18 NC_017337.1 891253-891270 2 0.889
NC_017337_9 9.2|2355902|18|NC_017337|CRT 2355902-2355919 18 NC_017337.1 473917-473934 2 0.889
NC_017337_9 9.2|2355902|18|NC_017337|CRT 2355902-2355919 18 NC_017337.1 678881-678898 2 0.889
NC_017337_9 9.2|2355902|18|NC_017337|CRT 2355902-2355919 18 NC_017337.1 1776597-1776614 2 0.889
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 555079-555109 2 0.935
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 947828-947858 2 0.935
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 1688169-1688199 2 0.935
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NC_017337.1 1776605-1776635 2 0.935
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 1688250-1688275 2 0.923
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 1688273-1688298 2 0.923
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 2390528-2390553 2 0.923
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 2495408-2495433 2 0.923
NC_017337_13 13.1|2826172|26|NC_017337|CRISPRCasFinder 2826172-2826197 26 NC_017337.1 2524725-2524750 2 0.923

1. spacer 1.1|637159|35|NC_017337|CRISPRCasFinder matches to position: 834288-834322, mismatch: 0, identity: 1.0

ggtgtgggccccaacaaagagaaattggattccca	CRISPR spacer
ggtgtgggccccaacaaagagaaattggattccca	Protospacer
***********************************

2. spacer 9.2|2355902|18|NC_017337|CRT matches to position: 801840-801857, mismatch: 0, identity: 1.0

ctttttgaaattctctat	CRISPR spacer
ctttttgaaattctctat	Protospacer
******************

3. spacer 9.2|2355902|18|NC_017337|CRT matches to position: 1185504-1185521, mismatch: 0, identity: 1.0

ctttttgaaattctctat	CRISPR spacer
ctttttgaaattctctat	Protospacer
******************

4. spacer 9.2|2355902|18|NC_017337|CRT matches to position: 2495365-2495382, mismatch: 0, identity: 1.0

ctttttgaaattctctat	CRISPR spacer
ctttttgaaattctctat	Protospacer
******************

5. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 637124-637154, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

6. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 834385-834415, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

7. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 834443-834473, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

8. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 834501-834531, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

9. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 834559-834589, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

10. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 1043869-1043899, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

11. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 1394746-1394776, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

12. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 1470164-1470194, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

13. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 1470222-1470252, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

14. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 1470279-1470309, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

15. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 2371298-2371328, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

16. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 2390434-2390464, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

17. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 2826261-2826291, mismatch: 0, identity: 1.0

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
ctcgcattgcctgtagaatttcttttcgaaa	Protospacer
*******************************

18. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 637218-637243, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

19. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 1668604-1668629, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

20. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 2390584-2390609, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

21. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 2390640-2390665, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

22. spacer 1.1|637159|35|NC_017337|CRISPRCasFinder matches to position: 2390469-2390503, mismatch: 1, identity: 0.971

ggtgtgggccccaacaaagagaaattggattccca	CRISPR spacer
ggtgtgggccccaacacagagaaattggattccca	Protospacer
**************** ******************

23. spacer 3.1|882619|39|NC_017337|PILER-CR matches to position: 555077-555115, mismatch: 1, identity: 0.974

gatttcgaaaagaaattctacaaacaatgcaagttgggg	CRISPR spacer
gatttcgaaaagaaattctacagacaatgcaagttgggg	Protospacer
**********************.****************

24. spacer 9.2|2355902|18|NC_017337|CRT matches to position: 1831563-1831580, mismatch: 1, identity: 0.944

ctttttgaaattctctat	CRISPR spacer
cttttcgaaattctctat	Protospacer
*****.************

25. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 1668567-1668597, mismatch: 1, identity: 0.968

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgcctgtagaatttcttttcgaaa	Protospacer
**.****************************

26. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 2826319-2826349, mismatch: 1, identity: 0.968

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgcctgtagaatttcttttcgaaa	Protospacer
**.****************************

27. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 2191306-2191331, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

28. spacer 1.1|637159|35|NC_017337|CRISPRCasFinder matches to position: 1043830-1043864, mismatch: 2, identity: 0.943

ggtgtgggccccaacaaagagaaattggattccca	CRISPR spacer
ggtggtggccccaacaaagagaaattggattccca	Protospacer
****  *****************************

29. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 43271-43306, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

30. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 142871-142906, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

31. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 554963-554998, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctgtcggaaagtcagcatacaataatgtgcaagtt	Protospacer
**** ******* ***********************

32. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 637236-637271, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

33. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 1668622-1668657, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

34. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 2131977-2132012, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

35. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 2390546-2390581, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

36. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 2390602-2390637, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

37. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 2390658-2390693, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

38. spacer 3.2|882678|36|NC_017337|PILER-CR matches to position: 2524697-2524732, mismatch: 2, identity: 0.944

gctggcggaaaggcagcatacaataatgtgcaagtt	CRISPR spacer
gctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
************ **** ******************

39. spacer 9.1|2355843|18|NC_017337|CRT matches to position: 891253-891270, mismatch: 2, identity: 0.889

acttttgtcagcttctgt	CRISPR spacer
acctttgtcagcttcagt	Protospacer
**.************ **

40. spacer 9.2|2355902|18|NC_017337|CRT matches to position: 473917-473934, mismatch: 2, identity: 0.889

ctttttgaaattctctat	CRISPR spacer
cttttttaaattctccat	Protospacer
****** ********.**

41. spacer 9.2|2355902|18|NC_017337|CRT matches to position: 678881-678898, mismatch: 2, identity: 0.889

ctttttgaaattctctat	CRISPR spacer
cttttcgaaattctttat	Protospacer
*****.********.***

42. spacer 9.2|2355902|18|NC_017337|CRT matches to position: 1776597-1776614, mismatch: 2, identity: 0.889

ctttttgaaattctctat	CRISPR spacer
cttttcgaaattctccat	Protospacer
*****.*********.**

43. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 555079-555109, mismatch: 2, identity: 0.935

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgtctgtagaatttcttttcgaaa	Protospacer
**.******.*********************

44. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 947828-947858, mismatch: 2, identity: 0.935

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgcttgtagaatttcttttcgaaa	Protospacer
**.*******.********************

45. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 1688169-1688199, mismatch: 2, identity: 0.935

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgcctgtagaatttctttacgaaa	Protospacer
**.********************** *****

46. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to position: 1776605-1776635, mismatch: 2, identity: 0.935

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
cttgcattgtctgtagaatttcttttcgaaa	Protospacer
**.******.*********************

47. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 1688250-1688275, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctatgttgggaccccg	Protospacer
***.****************.*****

48. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 1688273-1688298, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctgtgttggggccccg	Protospacer
***.********.*************

49. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 2390528-2390553, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttgcggccccg	Protospacer
************.***** *******

50. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 2495408-2495433, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctgtgttggggccccg	Protospacer
***.********.*************

51. spacer 13.1|2826172|26|NC_017337|CRISPRCasFinder matches to position: 2524725-2524750, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagctactgtgttggggccccg	Protospacer
********* **.*************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017337_6 6.1|1060048|29|NC_017337|CRISPRCasFinder 1060048-1060076 29 NZ_CP015322 Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence 703321-703349 6 0.793
NC_017337_10 10.1|2419497|33|NC_017337|CRISPRCasFinder 2419497-2419529 33 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 164873-164905 8 0.758
NC_017337_10 10.1|2419497|33|NC_017337|CRISPRCasFinder 2419497-2419529 33 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 498457-498489 8 0.758
NC_017337_12 12.1|2796847|31|NC_017337|CRISPRCasFinder 2796847-2796877 31 NZ_CP009619 Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence 270870-270900 8 0.742

1. spacer 6.1|1060048|29|NC_017337|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 6, identity: 0.793

taaaagagggatacttgcgctgagcgcat	CRISPR spacer
gatcaaagggttccttgcgctgagcgcat	Protospacer
 *  *.**** * ****************

2. spacer 10.1|2419497|33|NC_017337|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcaactgtataccttttgcctttaacttaagtt	CRISPR spacer
ttatagttataccttttgcttttaatttaagtg	Protospacer
*.*    ************.*****.****** 

3. spacer 10.1|2419497|33|NC_017337|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcaactgtataccttttgcctttaacttaagtt	CRISPR spacer
ttatagttataccttttgcttttaatttaagtg	Protospacer
*.*    ************.*****.****** 

4. spacer 12.1|2796847|31|NC_017337|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.742

ctcgcattgcctgtagaatttcttttcgaaa	CRISPR spacer
gctgcattacctgtagcatttcttttttcaa	Protospacer
 ..*****.******* *********.  **

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 321154 : 366548 65 Staphylococcus_phage(73.02%) tail,integrase,protease,holin,plate,capsid,terminase,head attL 321043:321061|attR 368718:368736
DBSCAN-SWA_2 431631 : 448400 19 Staphylococcus_phage(35.71%) terminase,integrase attL 434650:434673|attR 448668:448691
DBSCAN-SWA_3 766342 : 774163 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_4 786135 : 800515 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_5 973275 : 1025290 51 Streptococcus_phage(33.33%) tRNA,bacteriocin,protease NA
DBSCAN-SWA_6 1045245 : 1053718 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1105192 : 1132876 57 Staphylococcus_phage(65.38%) portal,tail,protease,capsid,terminase,head NA
DBSCAN-SWA_8 1137439 : 1147112 9 Staphylococcus_phage(77.78%) holin,tail NA
DBSCAN-SWA_9 1625638 : 1633950 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_10 1703356 : 1712399 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_11 1836321 : 1914053 73 Staphylococcus_phage(92.59%) tRNA,protease,integrase,transposase attL 1902019:1902037|attR 1920815:1920833
DBSCAN-SWA_12 1941577 : 2018463 91 Staphylococcus_phage(71.01%) portal,tail,integrase,protease,tRNA,holin,transposase,capsid,terminase,head attL 1982609:1982623|attR 2020020:2020034
DBSCAN-SWA_13 2100511 : 2112018 15 Staphylococcus_phage(45.45%) integrase,capsid attL 2092393:2092416|attR 2115154:2115177
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage