CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017465	Lactobacillus fermentum CECT 5716, complete sequence	5 crisprs	cas14j,DEDDh,cas3,cse2gr11,cas7,cas5,cas6e,cas1,WYL,cas2,csa3,cas4,cas8c	1	39	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017465_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017465_1

286320-286408

TypeV

Consensus_repeat	Method
GAGCCTCCAGCGGGTGAATGGGATGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017465_1

>merge|NC_017465|1|286320-286408|CRISPRCasFinder
GAGCCTCCAGCGGGTGAATGGGATGGTGTTAACCTTAGCATTTCCTAGTATTCGGTTTGCAGAGCCTCCAGCGGGTGAATGGGATGGTG

>NC_017465|1|1|286320-286408|CRISPRCasFinder
GAGCCTCCAGCGGGTGAATGGGATGGTG	TTAACCTTAGCATTTCCTAGTATTCGGTTTGCA
GAGCCTCCAGCGGGTGAATGGGATGGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017465.1\|WP_014562138.1\|288098_289667_-\|DNA-primase	unknown	unknown	gnl\|CDD\|225913
NC_017465.1\|WP_003684055.1\|267597_269766_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NC_017465.1\|WP_041812592.1\|287081_287417_-\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_041812590.1\|286557_287067_-\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_014562141.1\|293019_294123_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_017465.1\|WP_003684053.1\|266965_267514_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NC_017465.1\|WP_041812588.1\|285814_286027_-\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_041812596.1\|291490_291673_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_017465.1\|WP_003686497.1\|271835_273329_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NC_017465.1\|WP_012390807.1\|282318_283083_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|313663
NC_017465.1\|WP_021815629.1\|280606_281119_+\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_080503615.1\|283610_283925_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379090
NC_017465.1\|WP_041812594.1\|291207_291474_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_017465.1\|WP_021815630.1\|281193_281598_+\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_012390812.1\|291789_292902_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_017465.1\|WP_014562139.1\|289721_290546_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240129
NC_017465.1\|WP_158305943.1\|290886_291036_-\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_049775653.1\|287430_287781_-\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_041807661.1\|283269_283599_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379084
NC_017465.1\|WP_003686492.1\|269847_270729_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643

Protein	Function_ID	Function_description	E-value
NC_017465.1\|WP_003684055.1\|267597_269766_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_017465.1\|WP_014562141.1\|293019_294123_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.20491e-36
NC_017465.1\|WP_003684053.1\|266965_267514_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	3.47151e-87
NC_017465.1\|WP_041812596.1\|291490_291673_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.30244e-07
NC_017465.1\|WP_003686497.1\|271835_273329_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NC_017465.1\|WP_012390807.1\|282318_283083_+\|hypothetical-protein	gnl\|CDD\|313663	pfam10479, FSA_C, Fragile site-associated protein C-terminus. This is the conserved C-terminal half of the protein KIAA1109 which is the fragile site-associated protein FSA. Genome-wide-association studies showed this protein to linked to the susceptibility to coeliac disease. The protein may also be associated with polycystic kidney disease.	0.000978277
NC_017465.1\|WP_080503615.1\|283610_283925_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379090	pfam13248, zf-ribbon_3, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	1.67669e-07
NC_017465.1\|WP_041812594.1\|291207_291474_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	5.56569e-10
NC_017465.1\|WP_003686492.1\|269847_270729_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	5.22551e-151
NC_017465.1\|WP_012390812.1\|291789_292902_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.69886e-12
NC_017465.1\|WP_014562139.1\|289721_290546_-\|hypothetical-protein	gnl\|CDD\|240129	cd04859, Prim_Pol, Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol). These primpol domains belong to the archaeal/eukaryal primase (AEP) superfamily. This group includes archaeal plasmids and bacteriophage AEPs. The ORF904 protein is a multifunctional protein having ATPase, primase and DNA polymerase activity, and may play a role in the replication of the archaeal plasmid. The pRN1 primpol domain exhibits DNA polymerase and primase activities; a cluster of active site residues (three acidic residues, and a histidine) is required for both these activities. For pRN1 primpol, the primase activity prefers dNTPs to rNTPs; incorporation of dNTPs requires rNTP as cofactor. The pRN1 primpol contains an unusual zinc-binding stem, which is not conserved in other members of this group.	1.9637e-26
NC_017465.1\|WP_041807661.1\|283269_283599_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379084	pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	0.000301283
NC_017465.1\|WP_014562138.1\|288098_289667_-\|DNA-primase	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	1.00584e-65

>NC_017465.1|WP_041812588.1|285814_286027_-|hypothetical-protein
MSRANRPIQNRIGDGRKIASVIDELKIELVIEEPNSGLLIEQLKVEQFTKGRRIALSPSRITIQSEFKPP
>NC_017465.1|WP_080503615.1|283610_283925_+|zinc-ribbon-domain-containing-protein
MKYCPNCGNQVDPKAVICPHCGIPLPSSSSFSTPATTTGDTGSAWWGVLGFFVPVAGLVLYIVWHNSEPKNAKSAGIGALIQVGVSIAFFIFCFFIILAADLSD
>NC_017465.1|WP_041807661.1|283269_283599_+|zinc-ribbon-domain-containing-protein
MNNQSNVTPQNDNTQYKFCQNCGAKIDVKAVVCPKCGVPVNGNNAESNPEDRNSGWWNLLGFLFPIVGWVLWAVWRKEYPQRAHGVCVWAWVSFVISLVIDFWGFLCTL
>NC_017465.1|WP_012390807.1|282318_283083_+|hypothetical-protein
MKKLRSFYKVLIALLVLLFVEFGVLLVSLSLADRGSKQTDTNSTNAENSSLKAKNSSLKAKKNSEKQAKYSNQEYALMAYLKLQGQTANELKQNKDNMNWKQDNNKFTIDFGAHATLMTVTDKQVQLTYDKSTEEGMGQGNGHKVYTKQELAEEFGNQKSTLDEILDTVNENSNNSSNTQSSAQNNQSQNNTANQANNTTYSSSTTGNTTTTTTGTTTGNTTATTTGNTTTTTTGNTTSNSDQDATTTNGGTTD
>NC_017465.1|WP_021815630.1|281193_281598_+|hypothetical-protein
MIPNADLYMFGVLNSSVHNTWMRVVAGRMKSDYQYSARVVYNNFVWPAPNKEAKKRIERTAEDIIAARRLDSSASLADLYDPDNFKNFEVELHKAHKANDDAVLKAYGLSPKATEQEIIQHLFKMYEKMTGEKK
>NC_017465.1|WP_021815629.1|280606_281119_+|hypothetical-protein
MKKLRSFYKVLIALLVLLFVEFGVVIITNNLSTSSNGKIASSSSSTYSDENGGNDYNNQYSQSTKKVDPIGMWKDDDDGAALSFNDNGTGRYVYADPTNSDTDDHFTWDYVGGNEYKVKLDDPDVSGDLTATFHDDGTMTLSGGSDWNTETFRQASPNLDLDEFLEQHDN
>NC_017465.1|WP_003686497.1|271835_273329_+|lysine--tRNA-ligase
MANEEHLNDQMVVRREKMQALRDQGVAPFGHRFDPDHDLSTDIRKKYENDSGELLLAQHNVVTIAGRMIGKRGSGKASFADLLDRGGKIQFYVRQDMVGEEAYKLFKESDLGDFWGITGDVIKTRMGELTVRAEKITFLSKALRPLPDKYHGLQDPELVYRQRYLDLITNRESFERFQTRTKIIKAVRRYMDDNGFLEVETPILENIASGAEARPFVTHHNALNIDMYMRIATELRLKRLIVGGMERVYELGRIFRNEGMDPYHNPEFDTMETYAAYFDFNDVMKETEGIFKAAAGVVADDLKITYQGTELDFSTSFKRLHMVDAIKEATGIDFWQEMTVEEARKLADDNGIKYESWWKVGHIINAFFEEKVQDTLEQPIFIYGHPVEVSPLAKINEEDSRFTDRFELYILGKEYANAFSELNDPIDQRKRFEAQAQENAEGNDEAQPIDEDFVEALEYGMPPTGGLGVGIDRMVMLMTDAKSIRDVLLFPTMRPKK
>NC_017465.1|WP_003686492.1|269847_270729_+|Hsp33-family-molecular-chaperone-HslO
MEDYLVKSVAENGQFRAYAVNATALVEEAHQIHDTWSAASAALGRAMVGTLLLATSGLQGEAGMTVKIQGDGPVGFIVVDGTAQGTVKAYMQNPHVHLPLNAKGKIDVAGAVGKTGTLSVTKMAPGDKTPYTGEVNLVSGELGDDFTYYLAQSEQIPSAVGLSVFVQSDDHIEVAGGFLIQVLPGASDEAINHLETTLRELPLVSDLLREGKTPEQILETIFAGRDLKILEKMPVEYKCDCSKDRFEKALSSLSKDDLQEMIDNDHGAEAVCRFCGHKYHFSEEELKYLVATK
>NC_017465.1|WP_003684055.1|267597_269766_+|ATP-dependent-zinc-metalloprotease-FtsH
MNNNRKNNGFSHNVLFYSVIFLCIMGIAYFLFGGNSTTSQSKNLSQSEFISALKSDKVKSFQLQPDGGVYRITGTYRKAQPVSSSSTTGFSLGGQSASSTTNFESSVLESDVTIAQLQKYAEKEKVEVSTKSEESNSLWMNLLVTVLPLVIMIFFFYMMMGQAGQGGGGRGVMNFGKTKTKPSDPKENKVRFSDVAGEEEEKQELVEIVEFLKNPKKFMRLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKTAPSIIFIDEIDAVGRRRGNGMGGGHDEREQTLNQLLVEMDGFQGDEGVIVMAATNRSDVLDPALLRPGRFDRKILVGRPDVKGREAILRVHAKNKPLASNVDLKEIAKQTPGFVGADLENLLNEAALLAARRDRTEIDAADIDEAEDRVIAGPAKRDRVISPRERNTVAYHEAGHTIVGLVLNDARVVHKVTIVPRGRAGGYAIMLPREDEMLMSKKNAEEQIAGLMGGRAAEEIIFKSQSSGASNDFEQATQIARAMVTQYGMSDKIGPVELQSSGQVFTGQGYDQSPYSEQTAALVDQEVRRILLEGHEQALHIIETHREQHKLIAEALLKYETLDEKQILSLYKTGKMPEEDVVAAEDEQHAQTFEESKRELERRENAKAEATEEDAEQTTSQTEGDEQSTPQATDAEQDKQADQTDQTKKPTDPDQPDDWDHRE
>NC_017465.1|WP_003684053.1|266965_267514_+|hypoxanthine-phosphoribosyltransferase
MNNDIERILFDEEQIQTRVAELAAQITNDYQGKRPVIVSVLTGAVLFTVDLIKKIDLYAEMDFVDVSSYYGGTASSGTVKLLHDLKHSIAGKDVIIVEDIVDTGRTLKFLMELLEGRGATSIKVCTFFDKPAGREVEVATDYVGFDVPHEFLVGYGLDYENYYRNLPYVGVLKPEVYQKNDD
>NC_017465.1|WP_041812590.1|286557_287067_-|hypothetical-protein
MXYEQILAILDXWIATYEQEFDYLWVQGRMKVLDKSIKDRREKLDKTFIKIPFTGKRLFDDIGVLPGHKWIPTALMEDAKEVTKYNRLLEQAKRMVTDLIETQSALIPEVEQLAREIDNLPESEIDHRLTDRTSRIASYMSSTQAQRRAIDNITNEPKKRITWWKVGAK
>NC_017465.1|WP_041812592.1|287081_287417_-|hypothetical-protein
MTEQELVGLKYLEMLRLMVVVKNLEHSIPELVDEITYLAHDSSEYQAKAKLLTEVYHKHRVFINQIMQDRDECYQEAKEIMTSHRWDEVVSPDLAYNICDAGLMLAEALKE
>NC_017465.1|WP_049775653.1|287430_287781_-|hypothetical-protein
MLNSDEKKIIKAIPKGAEHPRAMREVARLVGLDTRTVRAIVHDLNVKGYPIGASRHQPAGYFWATSDDELALALRPIASQTREIQRRLAGLRRAKAISKGEALAEPTADDKKAKEA
>NC_017465.1|WP_014562138.1|288098_289667_-|DNA-primase
MPVKSIPQDAQNAIDEMVKRRHDAQPKSFDEQLELLTAWGRQYRKENTRTVHHQDGTESVTTKRMPARMIADRIEAVASIAKLGETDRELESAPLVLYVPDRGIYTHSTARVRRMILALEPACTIKARNEVEWLLDGEATAKAPESSPSLIPVGNGIYNTDSGEFQPFTPEIVFTSKIATNYNPNATEPSFNGWKFSDWVNELAQGDEAKRTLIWQMIASIVKNRDTANVFFAFVDNGQGRTGKSTLEQLLMNLVGKDNYTSLKLDEFGHDFKLANAYGARLIIGDDNEPKGFIDDGSNLKSIVTNETVLLNPKGAKPFTAKFFATVVQSMNGVPTFRDKSGGLYRRFRMLNFPKQYPDTPAGKRIKNDYIYDRQLLEWILKKALEVDVTTIIDTKESQELVYDTRLDNDPVLYFVEEVVGQLKSTRVPTNFLFNLFCAFMKAENSPTKLKQRSFTKQVRPYMERRGWKYDNKNLTASKYFNKADMQLVHGFDDLVGTNYPRLAEQGVRTRMGIFYRDXKAG
>NC_017465.1|WP_014562139.1|289721_290546_-|hypothetical-protein
MGAKRRALQLXQAGVPVYPLAPGSKTPPKGHHGYREATTDTDTILRWSDDWGLGIDLFTAGMLVVDLDRPGTDRNGHAVHGGKNGVKALKRYLEQHQRRLPHPMYAEQTPHGGLHLFFKLDQPLQKPTRKPNALPGVDILGDFVIASPSEVDGSPYLVMQGQAQPVSIHDTATAPQLIVDLLTAPQTAFNPTKANSFMKGQKTYTGRLFDKIAQGANEGERNNWLASVTGSILNAGTDPANAYYLIGWINERFISPPLDDREVNAVFKSVCKYH
>NC_017465.1|WP_158305943.1|290886_291036_-|hypothetical-protein
MEALETAIWTAGLLLFVMIGMGWLAIAILPMYLLWIAWNLEQYVKENGH
>NC_017465.1|WP_041812594.1|291207_291474_-|helix-turn-helix-domain-containing-protein
MEIKLQLPDEFVGMIAKCLADQLEQQTPHPQMEADAWLNKGQASEYLGVSRVFLDELIKSQSLPCKRIGTRSYRFKKADLDDWLRSQQ
>NC_017465.1|WP_041812596.1|291490_291673_-|helix-turn-helix-domain-containing-protein
MSEYLTYKEACEILHLKSYKGLYYLIKNGLPVIVIGNSKRISANDLKKFMEDHTVTTAPK
>NC_017465.1|WP_012390812.1|291789_292902_+|helix-turn-helix-transcriptional-regulator
MANVDFTFEGYLDMKKRITDLDMKITDLDMKNRITELREEKGLSMRKLSKSLKEKGLSLSTDSLSKYERGVRNPKIENWEKLAEFFKVPVDYLEGRGWSQDDVVEVLLFVIANRYHGFFDGPFYVEVDNGKVFKYGFDKVDLYSVDLKDLPGYKEKMKEYLKKQVTIDENEKGRKVTHSDDYLQDDYYDDYFDELVGVYAPNDEVVRQSLIDEIDNPTIDLASVLGGLLPGDEIRKIETAYIEFDFEDKLLEELHSRNETFFAFKKILLDNIKSLSDYAFLASIGEGWGMQPSPEYVIAKRLSDELQEKKFDSKMASFKVDPYKASKKNIDAMSVTSNDHELLFEIVAYLLDENKELKKRVDQLENKLPK
>NC_017465.1|WP_014562141.1|293019_294123_+|site-specific-integrase
MRTTISITKRGSRYQARVNWYDNQDKRHQKSAGYFNRRKDAVATAERVRDELQEQLNPDLTEITLADYYQRWYQLYKEQGITRITQNRYKVIGNVLTKYFNKKKLKDVRKSDYQAFINWYGABHARDSVNKLNGAVKKMVSFALDDEIIRKDFTSNIQVIANKDRERKVEYLNQKETAVLMDAVKADLDPDHPVKYMILTALLTGMRKSEIQALTWNDLDFLHSTININKSWDEIEKAFKPTKTLSSRRVIPVNRELLKMLASLKANNSTMVFYSPEYDQVPTGNALNKALRXIMHQQAIAKQGFHFHSLRHVHVAYLLGQGVDVYAISKRLGHSDITITLKTYSYLIDEYKAKNDDLIVKKLQELI

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Crispr_ID: NC_017465_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017465_2

817592-818780

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCCCCATGTATGTGGGGGTGATCC	PILER-CR
GTATTCCCCATGTATGTGGGGGTGATCCT	CRISPRCasFinder
GTATTCCCCATGTATGTGGGGGTGATCCT	CRT

19 spacers

cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NC_017465_2

>merge|NC_017465|2|817592-818780|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCATGTATGTGGGGGTGATCCTTAAAGGAGAATACTATGATCAACAAAAAAATTGTATTCCCCATGTATGTGGGGGTGATCCTTTTTGCAGGGTTCGCTAGTGATGGCAAAGGTGGTATTCCCCATGTATGTGGGGGTGATCCTATCAGCTTGTGCTGCACTTGCCGATGATTTAGGTATTCCCCATGTATGTGGGGGTGATCCTGATATGATCTACGATCAGGGAACCTATGCTTCGTATTCCCCATGTATGTGGGGGTGATCCCATCTTGCCTACGATTGACACCTCAACCGGTGAGTATTCCCCATGTATGTGGGGGTGATCCTAGGGACACAAGATAACCTTGCCGAGATAATGAGTATTCCCCATGTATGTGGGGGTGATCCTCGTGTTTCAAGATCCGTCCCGAGCTTGTTTTGGTATTCCCCATGTATGTGGGGGTGATCCTTTAATAGCAATAGTCTACCGTATTAGGAGAAGGTATTCCCCATGTATGTGGGGGTGATCCTACACAATAAGCGTTAATACTAAAAATAACGGTGTATTCCCCATGTATGTGGGGGTGATCCTCCCGGTTTCTGTATCTACTCCAACTTCATCGAGTATTCCCCATGTATGTGGGGGTGATCCTTTGTTATATGAGTAACCGCACTTAGCATTAGCGTATTCCCCATGTATGTGGGGGTGATCCTTAAATACTTAAACTACAAGGTCGATGAAAAAGGTATTCCCCATGTATGTGGGGGTGATCCCCAGATAAGATGACGATCATCACGACCAACAACGTATTCCCCATGTATGTGGGGGTGATCCTAGGTGGCAATAGGCCATCCCCAGGGGTCTCCCGTATTCCCCATGTATGTGGGGGTGATCCTTATAGTCGGCCACTGAATGGACTTCCGCATCAGTATTCCCCATGTATGTGGGGGTGATCCTATTGGGAGAAGCTGTTTGGCCCACTTGATCCAAGTATTCCCCATGTATGTGGGGGTGATCCTTTCCAGTCGTGGAATCGATGCTGACCGTCGGTGTATTCCCCATGTATGTGGGGGTGATCCCCAACAAAGCGGCAATCAACAGCAAGGACCAGCGTATTCCCCATGTATGTGGGGGTGATCCTATGCAAGAGTGGCTTTATCAAGTCGCCAATGCGTATTCCCCATGTATGTGGGGGTGATCCT

>NC_017465|2|1|817592-818779|PILER-CR
GTATTCCCCATGTATGTGGGGGTGATCC	TTAAAGGAGAATACTATGATCAACAAAAAAATT
GTATTCCCCATGTATGTGGGGGTGATCC	TTTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG
GTATTCCCCATGTATGTGGGGGTGATCC	TATCAGCTTGTGCTGCACTTGCCGATGATTTAG
GTATTCCCCATGTATGTGGGGGTGATCC	TGATATGATCTACGATCAGGGAACCTATGCTTC
GTATTCCCCATGTATGTGGGGGTGATCC	CATCTTGCCTACGATTGACACCTCAACCGGTGA
GTATTCCCCATGTATGTGGGGGTGATCC	TAGGGACACAAGATAACCTTGCCGAGATAATGA
GTATTCCCCATGTATGTGGGGGTGATCC	TCGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG
GTATTCCCCATGTATGTGGGGGTGATCC	TTTAATAGCAATAGTCTACCGTATTAGGAGAAG
GTATTCCCCATGTATGTGGGGGTGATCC	TACACAATAAGCGTTAATACTAAAAATAACGGT
GTATTCCCCATGTATGTGGGGGTGATCC	TCCCGGTTTCTGTATCTACTCCAACTTCATCGA
GTATTCCCCATGTATGTGGGGGTGATCC	TTTGTTATATGAGTAACCGCACTTAGCATTAGC
GTATTCCCCATGTATGTGGGGGTGATCC	TTAAATACTTAAACTACAAGGTCGATGAAAAAG
GTATTCCCCATGTATGTGGGGGTGATCC	CCAGATAAGATGACGATCATCACGACCAACAAC
GTATTCCCCATGTATGTGGGGGTGATCC	TAGGTGGCAATAGGCCATCCCCAGGGGTCTCCC
GTATTCCCCATGTATGTGGGGGTGATCC	TTATAGTCGGCCACTGAATGGACTTCCGCATCA
GTATTCCCCATGTATGTGGGGGTGATCC	TATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA
GTATTCCCCATGTATGTGGGGGTGATCC	TTTCCAGTCGTGGAATCGATGCTGACCGTCGGT
GTATTCCCCATGTATGTGGGGGTGATCC	CCAACAAAGCGGCAATCAACAGCAAGGACCAGC
GTATTCCCCATGTATGTGGGGGTGATCC	TATGCAAGAGTGGCTTTATCAAGTCGCCAATGC
GTATTCCCCATGTATGTGGGGGTGATCC

>NC_017465|2|2|817592-818780|CRISPRCasFinder
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAAGGAGAATACTATGATCAACAAAAAAATT
GTATTCCCCATGTATGTGGGGGTGATCCT	TTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG
GTATTCCCCATGTATGTGGGGGTGATCCT	ATCAGCTTGTGCTGCACTTGCCGATGATTTAG
GTATTCCCCATGTATGTGGGGGTGATCCT	GATATGATCTACGATCAGGGAACCTATGCTTC
GTATTCCCCATGTATGTGGGGGTGATCCC	ATCTTGCCTACGATTGACACCTCAACCGGTGA
GTATTCCCCATGTATGTGGGGGTGATCCT	AGGGACACAAGATAACCTTGCCGAGATAATGA
GTATTCCCCATGTATGTGGGGGTGATCCT	CGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG
GTATTCCCCATGTATGTGGGGGTGATCCT	TTAATAGCAATAGTCTACCGTATTAGGAGAAG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACACAATAAGCGTTAATACTAAAAATAACGGT
GTATTCCCCATGTATGTGGGGGTGATCCT	CCCGGTTTCTGTATCTACTCCAACTTCATCGA
GTATTCCCCATGTATGTGGGGGTGATCCT	TTGTTATATGAGTAACCGCACTTAGCATTAGC
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAATACTTAAACTACAAGGTCGATGAAAAAG
GTATTCCCCATGTATGTGGGGGTGATCCC	CAGATAAGATGACGATCATCACGACCAACAAC
GTATTCCCCATGTATGTGGGGGTGATCCT	AGGTGGCAATAGGCCATCCCCAGGGGTCTCCC
GTATTCCCCATGTATGTGGGGGTGATCCT	TATAGTCGGCCACTGAATGGACTTCCGCATCA
GTATTCCCCATGTATGTGGGGGTGATCCT	ATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TTCCAGTCGTGGAATCGATGCTGACCGTCGGT
GTATTCCCCATGTATGTGGGGGTGATCCC	CAACAAAGCGGCAATCAACAGCAAGGACCAGC
GTATTCCCCATGTATGTGGGGGTGATCCT	ATGCAAGAGTGGCTTTATCAAGTCGCCAATGC
GTATTCCCCATGTATGTGGGGGTGATCCT

>NC_017465|2|1|817592-818780|CRT
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAAGGAGAATACTATGATCAACAAAAAAATT
GTATTCCCCATGTATGTGGGGGTGATCCT	TTTTGCAGGGTTCGCTAGTGATGGCAAAGGTG
GTATTCCCCATGTATGTGGGGGTGATCCT	ATCAGCTTGTGCTGCACTTGCCGATGATTTAG
GTATTCCCCATGTATGTGGGGGTGATCCT	GATATGATCTACGATCAGGGAACCTATGCTTC
GTATTCCCCATGTATGTGGGGGTGATCCC	ATCTTGCCTACGATTGACACCTCAACCGGTGA
GTATTCCCCATGTATGTGGGGGTGATCCT	AGGGACACAAGATAACCTTGCCGAGATAATGA
GTATTCCCCATGTATGTGGGGGTGATCCT	CGTGTTTCAAGATCCGTCCCGAGCTTGTTTTG
GTATTCCCCATGTATGTGGGGGTGATCCT	TTAATAGCAATAGTCTACCGTATTAGGAGAAG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACACAATAAGCGTTAATACTAAAAATAACGGT
GTATTCCCCATGTATGTGGGGGTGATCCT	CCCGGTTTCTGTATCTACTCCAACTTCATCGA
GTATTCCCCATGTATGTGGGGGTGATCCT	TTGTTATATGAGTAACCGCACTTAGCATTAGC
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAATACTTAAACTACAAGGTCGATGAAAAAG
GTATTCCCCATGTATGTGGGGGTGATCCC	CAGATAAGATGACGATCATCACGACCAACAAC
GTATTCCCCATGTATGTGGGGGTGATCCT	AGGTGGCAATAGGCCATCCCCAGGGGTCTCCC
GTATTCCCCATGTATGTGGGGGTGATCCT	TATAGTCGGCCACTGAATGGACTTCCGCATCA
GTATTCCCCATGTATGTGGGGGTGATCCT	ATTGGGAGAAGCTGTTTGGCCCACTTGATCCAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TTCCAGTCGTGGAATCGATGCTGACCGTCGGT
GTATTCCCCATGTATGTGGGGGTGATCCC	CAACAAAGCGGCAATCAACAGCAAGGACCAGC
GTATTCCCCATGTATGTGGGGGTGATCCT	ATGCAAGAGTGGCTTTATCAAGTCGCCAATGC
GTATTCCCCATGTATGTGGGGGTGATCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017465.1\|WP_134771497.1\|824672_825623_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_017465.1\|WP_003685235.1\|831310_831937_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NC_017465.1\|WP_012391076.1\|811464_812058_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_017465.1\|WP_012391077.1\|812084_813167_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_017465.1\|WP_041812692.1\|800645_801524_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_017465.1\|WP_008211256.1\|825742_826063_-\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_041812696.1\|802573_803812_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_017465.1\|WP_041812698.1\|803922_804210_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_017465.1\|WP_012391085.1\|826191_827415_+\|DUF389-domain-containing-protein	unknown	unknown	gnl\|CDD\|377221
NC_017465.1\|WP_012391080.1\|814527_815469_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_017465.1\|WP_008211252.1\|827436_828771_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|129987
NC_017465.1\|WP_041812700.1\|823491_823854_+\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_012391078.1\|813147_813855_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
NC_017465.1\|WP_031265251.1\|813872_814514_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NC_017465.1\|WP_012391056.1\|808599_809787_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_017465.1\|WP_012391074.1\|805672_808396_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_017465.1\|WP_003685231.1\|832420_832648_+\|YneF-family-protein	unknown	unknown	gnl\|CDD\|367606
NC_017465.1\|WP_012391088.1\|832092_832344_+\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|368690
NC_017465.1\|WP_162465530.1\|828863_829550_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NC_017465.1\|WP_012391635.1\|824055_824748_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233

Protein	Function_ID	Function_description	E-value
NC_017465.1\|WP_134771497.1\|824672_825623_+\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.02545e-23
NC_017465.1\|WP_012391635.1\|824055_824748_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	0.00111747
NC_017465.1\|WP_012391077.1\|812084_813167_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.97619e-152
NC_017465.1\|WP_041812692.1\|800645_801524_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.00092e-63
NC_017465.1\|WP_162465530.1\|828863_829550_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.14616e-70
NC_017465.1\|WP_041812696.1\|802573_803812_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.30525e-128
NC_017465.1\|WP_041812698.1\|803922_804210_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.66971e-07
NC_017465.1\|WP_012391085.1\|826191_827415_+\|DUF389-domain-containing-protein	gnl\|CDD\|377221	pfam04087, DUF389, Domain of unknown function (DUF389). Family of hypothetical bacterial proteins with an undetermined function.	1.2786e-50
NC_017465.1\|WP_012391080.1\|814527_815469_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.61817e-129
NC_017465.1\|WP_008211252.1\|827436_828771_-\|APC-family-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.29719e-34
NC_017465.1\|WP_012391078.1\|813147_813855_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23532e-46
NC_017465.1\|WP_031265251.1\|813872_814514_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.35618e-72
NC_017465.1\|WP_012391056.1\|808599_809787_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	4.53559e-113
NC_017465.1\|WP_012391074.1\|805672_808396_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.72627e-78
NC_017465.1\|WP_003685231.1\|832420_832648_+\|YneF-family-protein	gnl\|CDD\|367606	pfam03672, UPF0154, Uncharacterized protein family (UPF0154). This family contains a set of short bacterial proteins of unknown function.	3.05322e-23
NC_017465.1\|WP_012391088.1\|832092_832344_+\|DUF896-domain-containing-protein	gnl\|CDD\|368690	pfam05979, DUF896, Bacterial protein of unknown function (DUF896). In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.	9.45335e-26
NC_017465.1\|WP_003685235.1\|831310_831937_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	6.10821e-104
NC_017465.1\|WP_012391076.1\|811464_812058_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.73064e-22

>NC_017465.1|WP_012391080.1|814527_815469_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MKKIGADKPKLQELGRIGDRISFLYLEHAVVNRQDSAIKVEDSTGIIYIPVAIIGVLLLGPGVDVTHRAMELIGDSGAAVLWVGEHGVRQYAHGRALGHSSKLLELQAKLVSNTRTRIAVARKMYQKRFPTEDVSQLTMQELRGKEGSRIRRVYREWSKKTGVEWTRREYNHDNFESSTPINKALTEAHQALYGLCYSVVAALGASPGLGFIHTGHDLAFIYDFADLYKAEFSIPTAFEVVAAYGDDNIEDRTRWAMRDKIRESKLILKMVADLKDLLGDDDTRNADIINLWDDKEGLQKFGVQYHEFGDDNS
>NC_017465.1|WP_031265251.1|813872_814514_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MVYLSRVEIDTKNRRKIKDLTNLGAYHNWIEQSFPDEIQKGIRKRHLWRIDTLANRKYLLVVSEDKPDLTILSRYGIANTTATKEYSPFINSIKKGQQLRFRLVANPVLRKGARKNGERERTFPHITINQQKEWLIKRSERAGFKLSENSFEIKERDFVPLYHKGNRPIRLSRVAFEGILEVIDPIALQNTLIYGLGREKAYGMGMLTVIPIN
>NC_017465.1|WP_012391078.1|813147_813855_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLVIRIAAPLQSYGDPASFEKRTTFRAPSKSAVIGMIGAALGFRRESDDYKSLNDLDFAVRVDQPGEVLSDFQITHYSLKKPGKLSHRIYLQDAVFMVALSSKQDALMEEIEYALRHPKFQLYFGRRSNPPAGILKMKMCPDKTAINVLKELPWQASVWFQRKYKKDVFNARIYADAKLVPDRPNRLIKDAVGSFNQKSRYYEYRSVAEDNVFLENSNYFQRKNTDHDIWTSI
>NC_017465.1|WP_012391077.1|812084_813167_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTKNLYVDIHVLQTVPASNINRDDSGAPKTALYGGVMRARVSSQSWKHAMREAFKKDGDGAEWLLSHRTKKGIQLLAAKLAEKDNTLDLDAAIKKAIEVFKVAGIKVKKDENTTGALFLLSDGQIDKLADYALQNDSYDKKELKEVFSNKNSLDLALFGRMVADNPELNVDAASQVAHAISTHEIVPEFDYFTALDDEQDSAGAAMIDTLEFNSSTLYRYANVNVKELLHNLGSAELTLKGIELFIKKFVLSMPTGKQNSFANKTIPPYVMVTIRNDTPVNLVSAFEEPVRSNDGYIRKSIEKLENEYDVTQSFVEKPETTVVLSTKESKIDNQVKDISSLLTNVAECLERMMNDENISD
>NC_017465.1|WP_012391076.1|811464_812058_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MANEIAKVTAQIIYSLYNNGNLDKAVLASLRHAVTIKDHRAENVWPIMFSKMAASDISSDPQGRETRQETAIYTALRCFAIYQQGLTQLSYASSNQVSAEDKGQQLFVALADLRKSQDKQAALDRRIQNLLSSTNIDSVAKSITQLVRILKSTDRNLLLDFSQLAQDLFFFQMGYEYSRKVFLKWGRQYYWQSVSTN
>NC_017465.1|WP_012391056.1|808599_809787_+|IS256-family-transposase
MNQFNKDIIAALSSDKDITLNEVLRRQIEVAANQFLQNELTAVLGYEPHTRIDRSKDDVNYRNGTYTRTIDTEYGEINLTIPRDRLNKFQNALFPPYVRRTDGLEEMVIKMYSKGVTTREIADMVERMYGHYYSPTTVSNITKRTEHLVEEFHERKFKYSQYVCVFLDATYIPLRRGTVEREAVNVAIGIRSDGGKEVLDYSIAPTENGAAWSELLQGLRARGIKDIQLFIADGLVGLQSAIEANYPQAKFQRCWVHAERNLLGYVRKNDRREIITDFKAIRQAENLQAAKEQLAAFSAKWESSYKRRIKNLVQMEELFTFFSFPTAIRQTIYSTNLIESFNKSLKKMVRRKEQFPNEGALDRFIMTQVMEYNDKFENRAHRGFKDCHDTLDSMF
>NC_017465.1|WP_012391074.1|805672_808396_+|CRISPR-associated-helicase/endonuclease-Cas3
MGELTTEELSLWGKKAIRDDQELWLPLVIHLIDAKNVINWLYNHWLTDNQRSLLMIENSESVTQNVVKFLGYIHDIGKATTAFQTKQSYAHNDSLDEDIMEKMIRGGFKDIDKLSFLKRSASPHALAGEALLEVYGVNKSIAAIIGGHHGKPLSNPVAKDTRYNSENYWPETPGEEQNRWRKVQEDLFQYGLHLCGFHKSSEIPRVNKIQAVLLEGLLIMADWLASSEYLNDDPSKPLFPLIDINESAADVNTEQRYQNAINTWQINDEWSAERVSDIDEYYVQHWGFHPREVQLAMCQEISKALDPGMMIVEAPMGIGKTEIALTVAEQLASRCGCNGLFMGLPTQATSNAMFDRVEDWLAKEAKEQDAKLSIKLMHGKAKFNQRNQAIPRAENVQGSGAVVVNEWFTGKKSILEEFTVGTIDNLLQMGLKQRHLFLKHLGLSGKVVVIDEVHGYDVYMSSYLAKVLQWLGAYNVPVIALSATLPKGKRNELLKSYEKGKFGSDQFETEPGWENNEAYPLLSMLDGKHLKQVTNFVSQKYKYVQVKRINVENNKLIDIVNAKIKDGGVAGIIVNTVKRAEEIADLMPKDVLTIVLHSAFLAPDRQKIEERLQSMTGKNAARPPRLVVIGTQVLEQSLDIDFDVLFTDIAPMDLILQRVGRLHRHNIKRPKGLQTPQLYILGINDYDDYGKSNEYIYEKYLLMKTDHFLKEKIALPGDISKLVQQVYDTATDSEVYGLKEAKAKFDKDQKIAENKAKVFQIAEPKHRGTIHKWLDWNLPDDRQGEIKAQAAVRDIQETLEVILLKEIDHQFYLLDGRKLVEVDDKTISDQVIRLPSVVTPEWKLDTIIKKLEDITSKNLPQWQQSIWLHDSLALILGSKQTTDFFDFRLSYSSNKGLCYERLEEKHG
>NC_017465.1|WP_041812698.1|803922_804210_+|transposase
MTKHSYDKEFKEQAVQYYLDNKDHMTMNEISKNLGIGASTLHKWIKLFTETGEFGSGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK
>NC_017465.1|WP_041812696.1|802573_803812_+|IS256-family-transposase
MKGTSLCQXLELNLEDDELKELLLGDRDKXMQSIMAKILBEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGSLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCNNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSESKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAVERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWAAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
>NC_017465.1|WP_041812692.1|800645_801524_-|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYIPVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKAKHSRHISKPLIMHSDRGSQFTSEAYNQVTANMTLSYSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYQTQIQNLVVA
>NC_017465.1|WP_041812700.1|823491_823854_+|hypothetical-protein
MYNQITITPTELVVSPAGLDRLWALKGAIRVPWRHVTGIFRDQGAFEEHKGLRLPGTAIPGLYYAGSFFYDGQRRFYNVRRNXPIVVITLINEGYDRLILSVENPATVIERVTGHLLNXA
>NC_017465.1|WP_012391635.1|824055_824748_+|helix-turn-helix-domain-containing-protein
MNRLELLYGYQKTESGLKVYADMHHVNQNTMTRWIRQFLLHGLAGVRHRSLNHRYLLNTKIEAVKEYQAGFPGEKIIEKYDIRSLSQLKQWSIQYNNDELKTKSRKRVRKMGRKVSFEEKCKIVQWVLDHDNDYQGATIQFNVSYQRVYSWVHKYHEAADSWEALKDNRGHRKPQKALEEMTEKERLEAEIKRLKKINREMELEIAFAKKLVEIRNRGVKRPDDIKRFKN
>NC_017465.1|WP_134771497.1|824672_825623_+|IS3-family-transposase
MRKKISRNTQSGGEETGRYQAVQELINETAGSVSELTKIXKVSRKSYYQWLKRQPTQREIENKAILEAIYQIEKRHQNCAGYKKVTAILNNENRKNQEIPEYTFSFDFRINIKRVRRIMRKHGIKADVRQKKRSRKKEQQQYQEDNLLERKFIQIAPNLVWVSDTTELTYGRNNKVRLHVVLDLYGRYVLSYHISPTETAEAAIEAFKRAAKQAGTFAPLIHTDRGAAYTSKDFNNYLTSNNSKHSLSAPGTPADNAVIEHYWGDFKYIWMTHHPHPQTLTELKDLVKQGVEYFNTVEISSKRNNLTAEDFRNEAV
>NC_017465.1|WP_008211256.1|825742_826063_-|hypothetical-protein
MAENYPENMTELNKQYLEEQKRDPTITKQQLIRRAVADAFQDFLSEAEEGHYDSGKLVGNEIQVFGINQKLRHVIKPMGTSFESDFEKDGAKLMWYLEEQANKAIK
>NC_017465.1|WP_012391085.1|826191_827415_+|DUF389-domain-containing-protein
MQEISTDVLNQNVRKGLTLNWSTQAILFCAIIIACIGLNTNSAPIVIGAMLISPLMGPIVGIGYALGNSNSGLLSRGARLFAAQFIIAVTGATIYFFISPLNAATDQLLARTEPTLWDVLIAFFGGFAGVISFAKKDGGNVVPGVAIATALMPPLCTIGYGISHLNWPFVWGAGYLFLINAFFIALATAVGTIFFRICSGERLNVSVKQEVIVLIVAIIVIIPSSISAYSIVQKSYVTAQLSQFVEDKLPDQYIAQQSVTGKTIQLTVIGTHLSDQKVKSLDRSLKVYHLDHYALSIKQLTRGNYITAKEFQDYMKQNNPQTTPAVNSQTPENKSLNQVQSDLVKQYPRQITNVLTGEVVDKANHKRQLIAIQLTSRGQKSRATIQATANKLAKANDVDAVIQFVQS
>NC_017465.1|WP_008211252.1|827436_828771_-|APC-family-permease
MARSTHKQLNALSIFLLGIDGIIGSGIFLMPSRVYAKLGDLSMVVMPLAGIAILSIALCFANLASKIPGDGGAWLYTYTAFGRFAGFEIGIFTWLLGIITMATEISAFVTSLRSLFPVLNQHGPYLITALGILAALTGLNLMGSGFMDWVDNVSTITKVGVLVAFVVIGLFFIHPANLGNLTGSPAATPLFSRFNQGFGMVFYMFTGFSFLPIAASKMKNPEKMLPRALISVLLTAAGLYLVVQLTAIGVAGSGLAAANVPIAVAFSHFAGTVGYDLALMGMLISILGVALSVSFSTPLIASSLASEHQLLPRTLGRQNKRGVPLQSLILSVVICALFLLSGNYLFLASCIVFTSFVQYVPTIFAAIKLRHHSKLPVGFKLPGGLTIPVLALLVTMYLTLSFSVTLVLTGLGIFLVSALWYLYDDRDRKANGLERDISAKDRPF
>NC_017465.1|WP_162465530.1|828863_829550_+|IS6-family-transposase
MKNYFKGRHFQQDIILVAVGYYFRFNLSYRDVVEILRDRGITVHHTTIMRWVHHYGPIFQVLWRRHKHSASQSWRVDETYIKVKGQWCYLYRAIDNQGLTLDFELRKHRDYQSAYHFLKRLFTTDGRPNCLVTDQYGGTLKAIKQVIKDGLLEKANHQCSKYRNNLIEQDHRFIKRHRVRSAGFQTIRTAAKTLAGVEVVHAIRKETRRNGSFFGFSVTAELKQLLIA
>NC_017465.1|WP_003685235.1|831310_831937_-|transcriptional-repressor-LexA
MPRNSTNKQMAVLSFIHKQVDAHGYPPTVREICGAVGLSSTSTVHGHINRLIKKGYLKKDPSKPRALEITPAGLEVLGITPKQTQIPLLGVVAAGEPILAVQDATDFFPIPPSIPDHDDLFMLTIQGTSMINIGILNGDKVIVRRQETANNGDIVIAMTSDNEATCKRFFKEQGHIRLQPENDTLAPIILDDVTILGKVVGLFRDDIF
>NC_017465.1|WP_012391088.1|832092_832344_+|DUF896-domain-containing-protein
MAESPEQDRLLKRINELAHKNKTEGLTTAEKAERKRLRDQYLKNFRAAFRSNIEMMQIFDKNGKELTPEKVKEIQRKKGLRDD
>NC_017465.1|WP_003685231.1|832420_832648_+|YneF-family-protein
MGLTIALVILGILVGALIGFFGARRYMENYLRNNPPISEDMLRTMMLQMGQKPSDRKLHQMMQTMKSQAKRANRK

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Crispr_ID: NC_017465_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017465_3

820218-821650

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCCCCATGTATGTGGGGGTGATCC	PILER-CR
GTATTCCCCATGTATGTGGGGGTGATCCT	CRISPRCasFinder
GTATTCCCCATGTATGTGGGGGTGATCCT	CRT

23 spacers

cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NC_017465_3

>merge|NC_017465|3|820218-821650|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCATGTATGTGGGGGTGATCCTACAACCAACTGCAAACGGCAACCCAACAGATCGTATTCCCCATGTATGTGGGGGTGATCCTACAAAGATGAACTTGTGAAAATGTCTTTCTTGGTATTCCCCATGTATGTGGGGGTGATCCTCAAGGAAATACATCCCAAGTTTATCTAACTGGGTATTCCCCATGTATGTGGGGGTGATCCCCCGGTGAAAAGCAAGGCGAACGCTTCTTCCTCGTATTCCCCATGTATGTGGGGGTGATCCTACTGGTGATAACTCTGGTCGCCTGATGGTTTTGTATTCCCCATGTATGTGGGGGTGATCCTAGCTAATGATTTCTTTGGTAGCGTCAGCCAGGGTATTCCCCATGTATGTGGGGGTGATCCCGGATGTGCATCACGATCATGAAAAACGACCACAGTATTCCCCATGTATGTGGGGGTGATCCTAGTAAATGGTATCAGGGGGCCGGCGAGTTACAGTATTCCCCATGTATGTGGGGGTGATCCTTGCTGACAAGGTATTTAAGGACGCCGAGAAACGTATTCCCCATGTATGTGGGGGTGATCCTTGTCGGTTGTTCTGCTGATTGCGTTGCTGTGGGTATTCCCCATGTATGTGGGGGTGATCCTTAAGCCGTTTAGCCATTGCAGCGTTGCTCATAGTATTCCCCATGTATGTGGGGGTGATCCTCAGTGCCCACCCGGTGGACGTTAGCTCTATCCGTATTCCCCATGTATGTGGGGGTGATCCTACCGGCGGGCGAAGTTGGTCAACCTCGTCATTGTATTCCCCATGTATGTGGGGGTGATCCTGGTATCACCTGAATATGGCGCATCCCATCGTTGTATTCCCCATGTATGTGGGGGTGATCCTATGATCCAGGCGAGGCGATTGCTAACGGTAAGGTATTCCCCATGTATGTGGGGGTGATGTCGACGTTCATACCGAGGCCATTGTCAGTCCAAGGTATTCCCCATGTATGTGGGGGTGATCCTACATGGCATACGCTTGAAATTGACTACGATAAGTATTCCCCATGTATGTGGGGGTGATCCCATGATATCCATGGTTAGCAGTAGTAATTATGAGTATTCCCCATGTATGTGGGGGTGATCCTCTTGCTAGACGCTTTCTTCCACTTTGAAAGGGGTATTCCCCATGTATGTGGGGGTGATCCTATATCAACGTTTTAAGTTGGTTAGTGTCCCAAGTATTCCCCATGTATGTGGGGGTGATCCTTGGAAGAGCTGGACGTTGTCAAATGACGGGAAGTATTCCCCATGTATGTGGGGGTGATCCTTAAGTATTCTTAAAGGAGGTCACACATTACTGGTATTCCCCATGTATGTGGGGGTGATCCTACTTATCCATACCAACTTGACTAATTAAATCAGTATTCCCCATGTATGTGGGGGTGATCCT

>NC_017465|3|2|820218-821649|PILER-CR
GTATTCCCCATGTATGTGGGGGTGATCC	TACAACCAACTGCAAACGGCAACCCAACAGATC
GTATTCCCCATGTATGTGGGGGTGATCC	TACAAAGATGAACTTGTGAAAATGTCTTTCTTG
GTATTCCCCATGTATGTGGGGGTGATCC	TCAAGGAAATACATCCCAAGTTTATCTAACTGG
GTATTCCCCATGTATGTGGGGGTGATCC	CCCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC
GTATTCCCCATGTATGTGGGGGTGATCC	TACTGGTGATAACTCTGGTCGCCTGATGGTTTT
GTATTCCCCATGTATGTGGGGGTGATCC	TAGCTAATGATTTCTTTGGTAGCGTCAGCCAGG
GTATTCCCCATGTATGTGGGGGTGATCC	CGGATGTGCATCACGATCATGAAAAACGACCACA
GTATTCCCCATGTATGTGGGGGTGATCC	TAGTAAATGGTATCAGGGGGCCGGCGAGTTACA
GTATTCCCCATGTATGTGGGGGTGATCC	TTGCTGACAAGGTATTTAAGGACGCCGAGAAAC
GTATTCCCCATGTATGTGGGGGTGATCC	TTGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG
GTATTCCCCATGTATGTGGGGGTGATCC	TTAAGCCGTTTAGCCATTGCAGCGTTGCTCATA
GTATTCCCCATGTATGTGGGGGTGATCC	TCAGTGCCCACCCGGTGGACGTTAGCTCTATCC
GTATTCCCCATGTATGTGGGGGTGATCC	TACCGGCGGGCGAAGTTGGTCAACCTCGTCATT
GTATTCCCCATGTATGTGGGGGTGATCC	TGGTATCACCTGAATATGGCGCATCCCATCGTT
GTATTCCCCATGTATGTGGGGGTGATCC	TATGATCCAGGCGAGGCGATTGCTAACGGTAAG
GTATTCCCCATGTATGTGGGGGTGATGT	CGACGTTCATACCGAGGCCATTGTCAGTCCAAG
GTATTCCCCATGTATGTGGGGGTGATCC	TACATGGCATACGCTTGAAATTGACTACGATAA
GTATTCCCCATGTATGTGGGGGTGATCC	CATGATATCCATGGTTAGCAGTAGTAATTATGA
GTATTCCCCATGTATGTGGGGGTGATCC	TCTTGCTAGACGCTTTCTTCCACTTTGAAAGGG
GTATTCCCCATGTATGTGGGGGTGATCC	TATATCAACGTTTTAAGTTGGTTAGTGTCCCAA
GTATTCCCCATGTATGTGGGGGTGATCC	TTGGAAGAGCTGGACGTTGTCAAATGACGGGAA
GTATTCCCCATGTATGTGGGGGTGATCC	TTAAGTATTCTTAAAGGAGGTCACACATTACTG
GTATTCCCCATGTATGTGGGGGTGATCC	TACTTATCCATACCAACTTGACTAATTAAATCA
GTATTCCCCATGTATGTGGGGGTGATCC

>NC_017465|3|3|820218-821650|CRISPRCasFinder
GTATTCCCCATGTATGTGGGGGTGATCCT	ACAACCAACTGCAAACGGCAACCCAACAGATC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACAAAGATGAACTTGTGAAAATGTCTTTCTTG
GTATTCCCCATGTATGTGGGGGTGATCCT	CAAGGAAATACATCCCAAGTTTATCTAACTGG
GTATTCCCCATGTATGTGGGGGTGATCCC	CCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACTGGTGATAACTCTGGTCGCCTGATGGTTTT
GTATTCCCCATGTATGTGGGGGTGATCCT	AGCTAATGATTTCTTTGGTAGCGTCAGCCAGG
GTATTCCCCATGTATGTGGGGGTGATCCC	GGATGTGCATCACGATCATGAAAAACGACCACA
GTATTCCCCATGTATGTGGGGGTGATCCT	AGTAAATGGTATCAGGGGGCCGGCGAGTTACA
GTATTCCCCATGTATGTGGGGGTGATCCT	TGCTGACAAGGTATTTAAGGACGCCGAGAAAC
GTATTCCCCATGTATGTGGGGGTGATCCT	TGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAGCCGTTTAGCCATTGCAGCGTTGCTCATA
GTATTCCCCATGTATGTGGGGGTGATCCT	CAGTGCCCACCCGGTGGACGTTAGCTCTATCC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACCGGCGGGCGAAGTTGGTCAACCTCGTCATT
GTATTCCCCATGTATGTGGGGGTGATCCT	GGTATCACCTGAATATGGCGCATCCCATCGTT
GTATTCCCCATGTATGTGGGGGTGATCCT	ATGATCCAGGCGAGGCGATTGCTAACGGTAAG
GTATTCCCCATGTATGTGGGGGTGATGTC	GACGTTCATACCGAGGCCATTGTCAGTCCAAG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACATGGCATACGCTTGAAATTGACTACGATAA
GTATTCCCCATGTATGTGGGGGTGATCCC	ATGATATCCATGGTTAGCAGTAGTAATTATGA
GTATTCCCCATGTATGTGGGGGTGATCCT	CTTGCTAGACGCTTTCTTCCACTTTGAAAGGG
GTATTCCCCATGTATGTGGGGGTGATCCT	ATATCAACGTTTTAAGTTGGTTAGTGTCCCAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TGGAAGAGCTGGACGTTGTCAAATGACGGGAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAGTATTCTTAAAGGAGGTCACACATTACTG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACTTATCCATACCAACTTGACTAATTAAATCA
GTATTCCCCATGTATGTGGGGGTGATCCT

>NC_017465|3|2|820218-821650|CRT
GTATTCCCCATGTATGTGGGGGTGATCCT	ACAACCAACTGCAAACGGCAACCCAACAGATC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACAAAGATGAACTTGTGAAAATGTCTTTCTTG
GTATTCCCCATGTATGTGGGGGTGATCCT	CAAGGAAATACATCCCAAGTTTATCTAACTGG
GTATTCCCCATGTATGTGGGGGTGATCCC	CCGGTGAAAAGCAAGGCGAACGCTTCTTCCTC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACTGGTGATAACTCTGGTCGCCTGATGGTTTT
GTATTCCCCATGTATGTGGGGGTGATCCT	AGCTAATGATTTCTTTGGTAGCGTCAGCCAGG
GTATTCCCCATGTATGTGGGGGTGATCCC	GGATGTGCATCACGATCATGAAAAACGACCACA
GTATTCCCCATGTATGTGGGGGTGATCCT	AGTAAATGGTATCAGGGGGCCGGCGAGTTACA
GTATTCCCCATGTATGTGGGGGTGATCCT	TGCTGACAAGGTATTTAAGGACGCCGAGAAAC
GTATTCCCCATGTATGTGGGGGTGATCCT	TGTCGGTTGTTCTGCTGATTGCGTTGCTGTGG
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAGCCGTTTAGCCATTGCAGCGTTGCTCATA
GTATTCCCCATGTATGTGGGGGTGATCCT	CAGTGCCCACCCGGTGGACGTTAGCTCTATCC
GTATTCCCCATGTATGTGGGGGTGATCCT	ACCGGCGGGCGAAGTTGGTCAACCTCGTCATT
GTATTCCCCATGTATGTGGGGGTGATCCT	GGTATCACCTGAATATGGCGCATCCCATCGTT
GTATTCCCCATGTATGTGGGGGTGATCCT	ATGATCCAGGCGAGGCGATTGCTAACGGTAAG
GTATTCCCCATGTATGTGGGGGTGATGTC	GACGTTCATACCGAGGCCATTGTCAGTCCAAG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACATGGCATACGCTTGAAATTGACTACGATAA
GTATTCCCCATGTATGTGGGGGTGATCCC	ATGATATCCATGGTTAGCAGTAGTAATTATGA
GTATTCCCCATGTATGTGGGGGTGATCCT	CTTGCTAGACGCTTTCTTCCACTTTGAAAGGG
GTATTCCCCATGTATGTGGGGGTGATCCT	ATATCAACGTTTTAAGTTGGTTAGTGTCCCAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TGGAAGAGCTGGACGTTGTCAAATGACGGGAA
GTATTCCCCATGTATGTGGGGGTGATCCT	TAAGTATTCTTAAAGGAGGTCACACATTACTG
GTATTCCCCATGTATGTGGGGGTGATCCT	ACTTATCCATACCAACTTGACTAATTAAATCA
GTATTCCCCATGTATGTGGGGGTGATCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017465.1\|WP_134771497.1\|824672_825623_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_017465.1\|WP_003685235.1\|831310_831937_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NC_017465.1\|WP_012391076.1\|811464_812058_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_017465.1\|WP_012391077.1\|812084_813167_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_017465.1\|WP_041812692.1\|800645_801524_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_017465.1\|WP_008211256.1\|825742_826063_-\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_041812696.1\|802573_803812_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_017465.1\|WP_041812698.1\|803922_804210_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_017465.1\|WP_012391085.1\|826191_827415_+\|DUF389-domain-containing-protein	unknown	unknown	gnl\|CDD\|377221
NC_017465.1\|WP_012391080.1\|814527_815469_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_017465.1\|WP_008211252.1\|827436_828771_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|129987
NC_017465.1\|WP_041812700.1\|823491_823854_+\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_012391078.1\|813147_813855_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
NC_017465.1\|WP_031265251.1\|813872_814514_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NC_017465.1\|WP_012391056.1\|808599_809787_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_017465.1\|WP_012391074.1\|805672_808396_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_017465.1\|WP_003685231.1\|832420_832648_+\|YneF-family-protein	unknown	unknown	gnl\|CDD\|367606
NC_017465.1\|WP_012391088.1\|832092_832344_+\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|368690
NC_017465.1\|WP_162465530.1\|828863_829550_+\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NC_017465.1\|WP_012391635.1\|824055_824748_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233

Protein	Function_ID	Function_description	E-value
NC_017465.1\|WP_134771497.1\|824672_825623_+\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.02545e-23
NC_017465.1\|WP_012391635.1\|824055_824748_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	0.00111747
NC_017465.1\|WP_012391077.1\|812084_813167_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.97619e-152
NC_017465.1\|WP_041812692.1\|800645_801524_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.00092e-63
NC_017465.1\|WP_162465530.1\|828863_829550_+\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.14616e-70
NC_017465.1\|WP_041812696.1\|802573_803812_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.30525e-128
NC_017465.1\|WP_041812698.1\|803922_804210_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.66971e-07
NC_017465.1\|WP_012391085.1\|826191_827415_+\|DUF389-domain-containing-protein	gnl\|CDD\|377221	pfam04087, DUF389, Domain of unknown function (DUF389). Family of hypothetical bacterial proteins with an undetermined function.	1.2786e-50
NC_017465.1\|WP_012391080.1\|814527_815469_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.61817e-129
NC_017465.1\|WP_008211252.1\|827436_828771_-\|APC-family-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.29719e-34
NC_017465.1\|WP_012391078.1\|813147_813855_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23532e-46
NC_017465.1\|WP_031265251.1\|813872_814514_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.35618e-72
NC_017465.1\|WP_012391056.1\|808599_809787_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	4.53559e-113
NC_017465.1\|WP_012391074.1\|805672_808396_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.72627e-78
NC_017465.1\|WP_003685231.1\|832420_832648_+\|YneF-family-protein	gnl\|CDD\|367606	pfam03672, UPF0154, Uncharacterized protein family (UPF0154). This family contains a set of short bacterial proteins of unknown function.	3.05322e-23
NC_017465.1\|WP_012391088.1\|832092_832344_+\|DUF896-domain-containing-protein	gnl\|CDD\|368690	pfam05979, DUF896, Bacterial protein of unknown function (DUF896). In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.	9.45335e-26
NC_017465.1\|WP_003685235.1\|831310_831937_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	6.10821e-104
NC_017465.1\|WP_012391076.1\|811464_812058_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.73064e-22

>NC_017465.1|WP_012391080.1|814527_815469_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MKKIGADKPKLQELGRIGDRISFLYLEHAVVNRQDSAIKVEDSTGIIYIPVAIIGVLLLGPGVDVTHRAMELIGDSGAAVLWVGEHGVRQYAHGRALGHSSKLLELQAKLVSNTRTRIAVARKMYQKRFPTEDVSQLTMQELRGKEGSRIRRVYREWSKKTGVEWTRREYNHDNFESSTPINKALTEAHQALYGLCYSVVAALGASPGLGFIHTGHDLAFIYDFADLYKAEFSIPTAFEVVAAYGDDNIEDRTRWAMRDKIRESKLILKMVADLKDLLGDDDTRNADIINLWDDKEGLQKFGVQYHEFGDDNS
>NC_017465.1|WP_031265251.1|813872_814514_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MVYLSRVEIDTKNRRKIKDLTNLGAYHNWIEQSFPDEIQKGIRKRHLWRIDTLANRKYLLVVSEDKPDLTILSRYGIANTTATKEYSPFINSIKKGQQLRFRLVANPVLRKGARKNGERERTFPHITINQQKEWLIKRSERAGFKLSENSFEIKERDFVPLYHKGNRPIRLSRVAFEGILEVIDPIALQNTLIYGLGREKAYGMGMLTVIPIN
>NC_017465.1|WP_012391078.1|813147_813855_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLVIRIAAPLQSYGDPASFEKRTTFRAPSKSAVIGMIGAALGFRRESDDYKSLNDLDFAVRVDQPGEVLSDFQITHYSLKKPGKLSHRIYLQDAVFMVALSSKQDALMEEIEYALRHPKFQLYFGRRSNPPAGILKMKMCPDKTAINVLKELPWQASVWFQRKYKKDVFNARIYADAKLVPDRPNRLIKDAVGSFNQKSRYYEYRSVAEDNVFLENSNYFQRKNTDHDIWTSI
>NC_017465.1|WP_012391077.1|812084_813167_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTKNLYVDIHVLQTVPASNINRDDSGAPKTALYGGVMRARVSSQSWKHAMREAFKKDGDGAEWLLSHRTKKGIQLLAAKLAEKDNTLDLDAAIKKAIEVFKVAGIKVKKDENTTGALFLLSDGQIDKLADYALQNDSYDKKELKEVFSNKNSLDLALFGRMVADNPELNVDAASQVAHAISTHEIVPEFDYFTALDDEQDSAGAAMIDTLEFNSSTLYRYANVNVKELLHNLGSAELTLKGIELFIKKFVLSMPTGKQNSFANKTIPPYVMVTIRNDTPVNLVSAFEEPVRSNDGYIRKSIEKLENEYDVTQSFVEKPETTVVLSTKESKIDNQVKDISSLLTNVAECLERMMNDENISD
>NC_017465.1|WP_012391076.1|811464_812058_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MANEIAKVTAQIIYSLYNNGNLDKAVLASLRHAVTIKDHRAENVWPIMFSKMAASDISSDPQGRETRQETAIYTALRCFAIYQQGLTQLSYASSNQVSAEDKGQQLFVALADLRKSQDKQAALDRRIQNLLSSTNIDSVAKSITQLVRILKSTDRNLLLDFSQLAQDLFFFQMGYEYSRKVFLKWGRQYYWQSVSTN
>NC_017465.1|WP_012391056.1|808599_809787_+|IS256-family-transposase
MNQFNKDIIAALSSDKDITLNEVLRRQIEVAANQFLQNELTAVLGYEPHTRIDRSKDDVNYRNGTYTRTIDTEYGEINLTIPRDRLNKFQNALFPPYVRRTDGLEEMVIKMYSKGVTTREIADMVERMYGHYYSPTTVSNITKRTEHLVEEFHERKFKYSQYVCVFLDATYIPLRRGTVEREAVNVAIGIRSDGGKEVLDYSIAPTENGAAWSELLQGLRARGIKDIQLFIADGLVGLQSAIEANYPQAKFQRCWVHAERNLLGYVRKNDRREIITDFKAIRQAENLQAAKEQLAAFSAKWESSYKRRIKNLVQMEELFTFFSFPTAIRQTIYSTNLIESFNKSLKKMVRRKEQFPNEGALDRFIMTQVMEYNDKFENRAHRGFKDCHDTLDSMF
>NC_017465.1|WP_012391074.1|805672_808396_+|CRISPR-associated-helicase/endonuclease-Cas3
MGELTTEELSLWGKKAIRDDQELWLPLVIHLIDAKNVINWLYNHWLTDNQRSLLMIENSESVTQNVVKFLGYIHDIGKATTAFQTKQSYAHNDSLDEDIMEKMIRGGFKDIDKLSFLKRSASPHALAGEALLEVYGVNKSIAAIIGGHHGKPLSNPVAKDTRYNSENYWPETPGEEQNRWRKVQEDLFQYGLHLCGFHKSSEIPRVNKIQAVLLEGLLIMADWLASSEYLNDDPSKPLFPLIDINESAADVNTEQRYQNAINTWQINDEWSAERVSDIDEYYVQHWGFHPREVQLAMCQEISKALDPGMMIVEAPMGIGKTEIALTVAEQLASRCGCNGLFMGLPTQATSNAMFDRVEDWLAKEAKEQDAKLSIKLMHGKAKFNQRNQAIPRAENVQGSGAVVVNEWFTGKKSILEEFTVGTIDNLLQMGLKQRHLFLKHLGLSGKVVVIDEVHGYDVYMSSYLAKVLQWLGAYNVPVIALSATLPKGKRNELLKSYEKGKFGSDQFETEPGWENNEAYPLLSMLDGKHLKQVTNFVSQKYKYVQVKRINVENNKLIDIVNAKIKDGGVAGIIVNTVKRAEEIADLMPKDVLTIVLHSAFLAPDRQKIEERLQSMTGKNAARPPRLVVIGTQVLEQSLDIDFDVLFTDIAPMDLILQRVGRLHRHNIKRPKGLQTPQLYILGINDYDDYGKSNEYIYEKYLLMKTDHFLKEKIALPGDISKLVQQVYDTATDSEVYGLKEAKAKFDKDQKIAENKAKVFQIAEPKHRGTIHKWLDWNLPDDRQGEIKAQAAVRDIQETLEVILLKEIDHQFYLLDGRKLVEVDDKTISDQVIRLPSVVTPEWKLDTIIKKLEDITSKNLPQWQQSIWLHDSLALILGSKQTTDFFDFRLSYSSNKGLCYERLEEKHG
>NC_017465.1|WP_041812698.1|803922_804210_+|transposase
MTKHSYDKEFKEQAVQYYLDNKDHMTMNEISKNLGIGASTLHKWIKLFTETGEFGSGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK
>NC_017465.1|WP_041812696.1|802573_803812_+|IS256-family-transposase
MKGTSLCQXLELNLEDDELKELLLGDRDKXMQSIMAKILBEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGSLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCNNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSESKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAVERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWAAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
>NC_017465.1|WP_041812692.1|800645_801524_-|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYIPVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKAKHSRHISKPLIMHSDRGSQFTSEAYNQVTANMTLSYSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYQTQIQNLVVA
>NC_017465.1|WP_041812700.1|823491_823854_+|hypothetical-protein
MYNQITITPTELVVSPAGLDRLWALKGAIRVPWRHVTGIFRDQGAFEEHKGLRLPGTAIPGLYYAGSFFYDGQRRFYNVRRNXPIVVITLINEGYDRLILSVENPATVIERVTGHLLNXA
>NC_017465.1|WP_012391635.1|824055_824748_+|helix-turn-helix-domain-containing-protein
MNRLELLYGYQKTESGLKVYADMHHVNQNTMTRWIRQFLLHGLAGVRHRSLNHRYLLNTKIEAVKEYQAGFPGEKIIEKYDIRSLSQLKQWSIQYNNDELKTKSRKRVRKMGRKVSFEEKCKIVQWVLDHDNDYQGATIQFNVSYQRVYSWVHKYHEAADSWEALKDNRGHRKPQKALEEMTEKERLEAEIKRLKKINREMELEIAFAKKLVEIRNRGVKRPDDIKRFKN
>NC_017465.1|WP_134771497.1|824672_825623_+|IS3-family-transposase
MRKKISRNTQSGGEETGRYQAVQELINETAGSVSELTKIXKVSRKSYYQWLKRQPTQREIENKAILEAIYQIEKRHQNCAGYKKVTAILNNENRKNQEIPEYTFSFDFRINIKRVRRIMRKHGIKADVRQKKRSRKKEQQQYQEDNLLERKFIQIAPNLVWVSDTTELTYGRNNKVRLHVVLDLYGRYVLSYHISPTETAEAAIEAFKRAAKQAGTFAPLIHTDRGAAYTSKDFNNYLTSNNSKHSLSAPGTPADNAVIEHYWGDFKYIWMTHHPHPQTLTELKDLVKQGVEYFNTVEISSKRNNLTAEDFRNEAV
>NC_017465.1|WP_008211256.1|825742_826063_-|hypothetical-protein
MAENYPENMTELNKQYLEEQKRDPTITKQQLIRRAVADAFQDFLSEAEEGHYDSGKLVGNEIQVFGINQKLRHVIKPMGTSFESDFEKDGAKLMWYLEEQANKAIK
>NC_017465.1|WP_012391085.1|826191_827415_+|DUF389-domain-containing-protein
MQEISTDVLNQNVRKGLTLNWSTQAILFCAIIIACIGLNTNSAPIVIGAMLISPLMGPIVGIGYALGNSNSGLLSRGARLFAAQFIIAVTGATIYFFISPLNAATDQLLARTEPTLWDVLIAFFGGFAGVISFAKKDGGNVVPGVAIATALMPPLCTIGYGISHLNWPFVWGAGYLFLINAFFIALATAVGTIFFRICSGERLNVSVKQEVIVLIVAIIVIIPSSISAYSIVQKSYVTAQLSQFVEDKLPDQYIAQQSVTGKTIQLTVIGTHLSDQKVKSLDRSLKVYHLDHYALSIKQLTRGNYITAKEFQDYMKQNNPQTTPAVNSQTPENKSLNQVQSDLVKQYPRQITNVLTGEVVDKANHKRQLIAIQLTSRGQKSRATIQATANKLAKANDVDAVIQFVQS
>NC_017465.1|WP_008211252.1|827436_828771_-|APC-family-permease
MARSTHKQLNALSIFLLGIDGIIGSGIFLMPSRVYAKLGDLSMVVMPLAGIAILSIALCFANLASKIPGDGGAWLYTYTAFGRFAGFEIGIFTWLLGIITMATEISAFVTSLRSLFPVLNQHGPYLITALGILAALTGLNLMGSGFMDWVDNVSTITKVGVLVAFVVIGLFFIHPANLGNLTGSPAATPLFSRFNQGFGMVFYMFTGFSFLPIAASKMKNPEKMLPRALISVLLTAAGLYLVVQLTAIGVAGSGLAAANVPIAVAFSHFAGTVGYDLALMGMLISILGVALSVSFSTPLIASSLASEHQLLPRTLGRQNKRGVPLQSLILSVVICALFLLSGNYLFLASCIVFTSFVQYVPTIFAAIKLRHHSKLPVGFKLPGGLTIPVLALLVTMYLTLSFSVTLVLTGLGIFLVSALWYLYDDRDRKANGLERDISAKDRPF
>NC_017465.1|WP_162465530.1|828863_829550_+|IS6-family-transposase
MKNYFKGRHFQQDIILVAVGYYFRFNLSYRDVVEILRDRGITVHHTTIMRWVHHYGPIFQVLWRRHKHSASQSWRVDETYIKVKGQWCYLYRAIDNQGLTLDFELRKHRDYQSAYHFLKRLFTTDGRPNCLVTDQYGGTLKAIKQVIKDGLLEKANHQCSKYRNNLIEQDHRFIKRHRVRSAGFQTIRTAAKTLAGVEVVHAIRKETRRNGSFFGFSVTAELKQLLIA
>NC_017465.1|WP_003685235.1|831310_831937_-|transcriptional-repressor-LexA
MPRNSTNKQMAVLSFIHKQVDAHGYPPTVREICGAVGLSSTSTVHGHINRLIKKGYLKKDPSKPRALEITPAGLEVLGITPKQTQIPLLGVVAAGEPILAVQDATDFFPIPPSIPDHDDLFMLTIQGTSMINIGILNGDKVIVRRQETANNGDIVIAMTSDNEATCKRFFKEQGHIRLQPENDTLAPIILDDVTILGKVVGLFRDDIF
>NC_017465.1|WP_012391088.1|832092_832344_+|DUF896-domain-containing-protein
MAESPEQDRLLKRINELAHKNKTEGLTTAEKAERKRLRDQYLKNFRAAFRSNIEMMQIFDKNGKELTPEKVKEIQRKKGLRDD
>NC_017465.1|WP_003685231.1|832420_832648_+|YneF-family-protein
MGLTIALVILGILVGALIGFFGARRYMENYLRNNPPISEDMLRTMMLQMGQKPSDRKLHQMMQTMKSQAKRANRK

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Crispr_ID: NC_017465_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017465_4

880947-881067

Orphan

Consensus_repeat	Method
TAGAGACTCTGATTTAGTATAATTAATGAAGTAAATTGGAGGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017465_4

>merge|NC_017465|4|880947-881067|CRISPRCasFinder
TAGAGACTCTGATTTAGTATAATTAATGAAGTAAATTGGAGGATCTGGGCCTAGAATAAAAAGTGTACAAGTTAAATAGAGACTCTGATTTAGTATAATTAAGGAAGTAAATTGGAGGATC

>NC_017465|4|4|880947-881067|CRISPRCasFinder
TAGAGACTCTGATTTAGTATAATTAATGAAGTAAATTGGAGGATC	TGGGCCTAGAATAAAAAGTGTACAAGTTAAA
TAGAGACTCTGATTTAGTATAATTAAGGAAGTAAATTGGAGGATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017465.1\|WP_014562317.1\|867766_869461_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200472
NC_017465.1\|WP_003685173.1\|875325_876291_+\|ketopantoate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224805
NC_017465.1\|WP_021815960.1\|877002_877614_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NC_017465.1\|WP_041812709.1\|883109_883475_-\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_041812712.1\|889579_890146_+\|imidazole-glycerol-phosphate-synthase	unknown	unknown	gnl\|CDD\|234996
NC_017465.1\|WP_012391115.1\|894570_895155_+\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|234873
NC_017465.1\|WP_014562320.1\|872502_873675_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NC_017465.1\|WP_014562322.1\|884657_885245_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237631
NC_017465.1\|WP_003685166.1\|879406_880807_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NC_017465.1\|WP_012391106.1\|877788_879117_-\|D-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235096
NC_017465.1\|WP_014562318.1\|869617_870604_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_017465.1\|WP_014562326.1\|890353_891193_+\|histidinol-phosphatase-HisJ	unknown	unknown	gnl\|CDD\|236155
NC_017465.1\|WP_041807745.1\|881072_881360_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_017465.1\|WP_014562327.1\|892668_893283_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234971
NC_017465.1\|WP_014562323.1\|885282_887139_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_017465.1\|WP_014562321.1\|883600_884647_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_017465.1\|WP_021815959.1\|872032_872350_+\|hypothetical-protein	unknown	unknown	unknown
NC_017465.1\|WP_003681896.1\|889393_889561_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234996
NC_017465.1\|WP_080558603.1\|871452_872052_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235104
NC_017465.1\|WP_003685171.1\|876636_876990_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|377753

Protein	Function_ID	Function_description	E-value
NC_017465.1\|WP_014562317.1\|867766_869461_-\|alpha-glucosidase	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_017465.1\|WP_003685173.1\|875325_876291_+\|ketopantoate-reductase-family-protein	gnl\|CDD\|224805	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].	4.17633e-60
NC_017465.1\|WP_021815960.1\|877002_877614_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	3.27973e-18
NC_017465.1\|WP_041812712.1\|889579_890146_+\|imidazole-glycerol-phosphate-synthase	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	1.29759e-68
NC_017465.1\|WP_012391115.1\|894570_895155_+\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	4.25881e-124
NC_017465.1\|WP_014562320.1\|872502_873675_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NC_017465.1\|WP_014562322.1\|884657_885245_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237631	PRK14162, PRK14162, heat shock protein GrpE; Provisional.	4.79644e-53
NC_017465.1\|WP_003685166.1\|879406_880807_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	5.69671e-158
NC_017465.1\|WP_012391106.1\|877788_879117_-\|D-serine-ammonia-lyase	gnl\|CDD\|235096	PRK02991, PRK02991, D-serine dehydratase; Provisional.	0
NC_017465.1\|WP_014562318.1\|869617_870604_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.60453e-100
NC_017465.1\|WP_014562326.1\|890353_891193_+\|histidinol-phosphatase-HisJ	gnl\|CDD\|236155	PRK08123, PRK08123, histidinol-phosphatase HisJ.	2.1097e-139
NC_017465.1\|WP_041807745.1\|881072_881360_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.34208e-05
NC_017465.1\|WP_014562327.1\|892668_893283_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|234971	PRK01686, hisG, ATP phosphoribosyltransferase catalytic subunit; Reviewed.	2.88591e-90
NC_017465.1\|WP_014562323.1\|885282_887139_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_017465.1\|WP_014562321.1\|883600_884647_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	5.98231e-130
NC_017465.1\|WP_003681896.1\|889393_889561_+\|hypothetical-protein	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	2.02348e-15
NC_017465.1\|WP_080558603.1\|871452_872052_+\|hypothetical-protein	gnl\|CDD\|235104	PRK03103, PRK03103, DNA polymerase IV; Reviewed.	4.68271e-31
NC_017465.1\|WP_003685171.1\|876636_876990_-\|DUF1304-domain-containing-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	5.69901e-24

>NC_017465.1|WP_003685166.1|879406_880807_-|amino-acid-permease
MKSKVVENQDGTMRALSNRHVQMIAIGGTIGTGLFLGSGSTISKTGPSIMLVYLTLALFFFFMMRAIGEMFYSDPSQHTFVSFISRYLGPTVGHFTGWTYWIGLVFVCMAELTATASYVQYWFPTIPSWLVELVFLAVLTSVNLIAARLFGEAEFWFAMIKIIAIIAMIVTGIFMMTSHSITPLGHASLSNIFHDYTLFPHGIFNFVSAFPMVFFAFQGIEFVSITIGEAKSPHAVIKKAVNETLLRILLFYIGALIVIMGIIPWTSLSANSSPFVQVFKLAGFPAAAATINFVVLTSAASALNSCIFSAGRHFYQLATEVPKSSWMNKTFAKISKNGVPAAAIILSAALVLITPLMSLTTAISSVFTIVTGVSSDMYIIVYTLTMIAHRKYRASSDFLPNGFVMPWYKVTSPLTIFFFGVIFVSLFFIPEDIIGAIGAIVWTLVFGSIEYFRQKKTALANIDQYK
>NC_017465.1|WP_012391106.1|877788_879117_-|D-serine-ammonia-lyase
MTENIEQLLHKFPLLNNMRQYEAIDWINPEFGEKAEIPFTQAEVFDVAARFKRFAPYLATVFPETQKTNGQLISPLIKIDKMQSRLASLNDAEIPGNVYLKADSMLPISGSIKSRGGIYEVLKFAEHVATTETNLTYSDDYAILATPEYHKLFADYGIMVGSTGNLGLSIGMAAASFGFKTTVHMSVDARQWKKDMLRANGVTVVEHNDSVSVAIAQGREEAAKDPHTYFIDDEGSKDLFLGYSAVGIEIQKQLADDGIFPDADHPVFVYLPAGVGGSPSGVSFGLQIMMPEGIYPVFAEPTHVPSVTMGMMTHLYDKIAVTDLGIDGKTLADGLAVPRSSKIAGRVMRTLLYGAHTFSDDDIYRYLAMLADTQGIYVEPSAAAGFTAIVPTVNEFKNKAALKNATHVVWATGGKLVPDDEMQKYYDKGRELLDEPQQILAR
>NC_017465.1|WP_021815960.1|877002_877614_-|alpha/beta-hydrolase
MFHQQGYNVLLPDARAHGQSQGKYIGYGWPERYDVRKWSKKLIAHNGQDSQIVIFGVSMGGATTMMTSGIHLPRQVKAFVEDFGYDSLNAELNYEAGNLYNIPRVIRAPLIGSLSLINRVKNGFYTHEASSTAMLARNHRPMLFIHGSKDTFVPTKMVYQNYAATKGPKKLWVVKGAKHAASYEKEPHEYPQHVARFLNQYVK
>NC_017465.1|WP_003685171.1|876636_876990_-|DUF1304-domain-containing-protein
MLVIFVVMLVAIGHIGIMLIEMFASPEQQARAFDLPVEFTRQKEARISFANQGIYNGALGVMIIASYWLVRGVLLITVWQMLLVFIMVVALYGGFTATKKIWVIQLLPALIAFLLTL
>NC_017465.1|WP_003685173.1|875325_876291_+|ketopantoate-reductase-family-protein
MMTKYTVIGAGAMGLRYGVLIQERTGNPVDFIDTWEPSVNTIQEQKGTWVSRDHKDKHMVPINISFPEDYTGDPDVWIIFVKQMQLAEVLKRCAPLFKAHQYAFSAMNGMGHIDKISEYFPDDHIVGGTAMIATVLNGPGDVDFMGAPRTGVMHMCNKTEKTDAMTQQMFDDFKAAGLGPILTENFMGTLMSKVVFNAVVNTLCTMFEITMGQFIEYPGAKDMAEQLMNESFDACERAGIHLVETRQEEVESVDYVSRVANPYHYPSMYQDFSKGRNTEVDYINGYIAKIGREHDYICRTHEFLVHEVHMAEMMRKYKQAK
>NC_017465.1|WP_014562320.1|872502_873675_+|iron-containing-alcohol-dehydrogenase
MNRQFDFLMPSVNFFGPGVIAKIGDRAKMLNMHKPLVVTQESLEKIENGPVVQTIESLKKAGVDYAIFTGVEPNPKIRNIKAGKKMYEEEKCDSIITVGGGSAHDCGKGIGIILTNGDDITKLAGIETLDNPLPPLMAVNTTAGTGSELTRHAVITNEEDHLKFVVVSWRNIPLVSFNDPMLMLGVPKSVTAATGCDAFVQAIEPYVSVDHNPITDSQCKEAIQLIQEALPEAVANGQNVEARTKMVEAEMLAGMAFNNANLGYVHAMAHQLGGQYDAPHGVCCALLLTTVEEYNLIACPDRFAELARIMGYDTTGLTTMQAAEKSIDGMREMCKAVGIPSSIKAIGAKPEDFSLMAENALKDGNAFSNPRKGTKQDIIDLYQKAYDGIY
>NC_017465.1|WP_021815959.1|872032_872350_+|hypothetical-protein
MDKAWNKETESEKICERIKRCFTNRWRTRYWVSVVYYEPEHGYNLFLNIQPRNAYSRSIPIARLADCDYSELLDIITDVRQTYHFTLNYLNFPDDQVRKMRRNFR
>NC_017465.1|WP_080558603.1|871452_872052_+|hypothetical-protein
MGVIGAQLYASAWRIDRTDLAEEVLPKDKSLGNSQVLPHDYTRAEEIEVVIREIGSQVASRLRXHDKQAGGVYLSIGYSLSTPTEETGFAHSLKLSDSTVDSNLINGQLLYLFYTYWDGVSPVRRISVAATRLADRYGEQLDLFNPPKYDMVKLEDTVDAIRKRFGKTSIMRASSLEKGGTFIERSQLVGGHAGGQSLE
>NC_017465.1|WP_014562318.1|869617_870604_+|LacI-family-transcriptional-regulator
MATIKDIARLAKVTPSTVSRVLNHSGGYSEKTRRRVEKIADEIHYQKNEAAVNLVAQTSNLIGVIVTNATTSFAAPIIDSIEDWAYQNGGRILLAHCGLNDSERLKTCLNLMAGRKVNGIISVSVQFDENNLKLLDQLQLPLISLGVKVSNQPMISIDNLKAATTGTNYLISRGYQRIALIAVDTSDPQTGRTRCAGYQKAMESAGLTPSIIPGDYSFAAGKQAAELLLAKGELPEAIFAASDDAAAGVIYAAQEHGIKVPKQLAVLGFDNSSVASMIYPGITTIDQPFKQMGRLAIEHLTNQNVSSVELPYQIKERGSVAKYNSAQS
>NC_017465.1|WP_014562317.1|867766_869461_-|alpha-glucosidase
MAYTPKWWWQNLVVYQVYPRSFQDSNHDGIGDLKGIISRLDYIKKLGADIIWLNPIYRSPNVDNGYDISDYRAIDPTFGSLTDFKELLTKAHELGLKIMMDLVVNHSSDENEWFKQSRQGKENPYRDYYIWRDPVDGHEPTNWGSYFSGSAWQYDETSGQYYLHLFAVKQPDLNWENEAVRHSVYDIMNWWADLGVDGFRMDVINLISKPAVYKDVPTAPGMQYGDVEPVVANGHRMHEFLQEMHQAVMAKHDLVTVGETPGATTDDAKKYANLEQTELNMVFEFEHVGLDDNDNPALVKWSDKKVSLPELRDNLVKWQTQLNGKAWNSLYWNNHDQPRVVSRFGNDDPKYRVVSAKMLATMLHCLQGTPYIYAGEELGMTNTTFNSLSDYRDLESINAYHQLVDEEHLVDGKTMSRYLAIHSRDNARTPMQWDDSKNAGFSDAEPWIAVNPNYSEINAKAALADPSSVFYHYQKLIQMRHDLPVMTEGKFALVNGNELDEQVFAYTRDDGETTLLVVANFTKETIKREYAAGQGKLLLSNYEDVMGETLRPYEAKVYEFSSKR
>NC_017465.1|WP_041807745.1|881072_881360_+|transposase
MTKHSYDKEFKEQAAQYYLGNKDHMTMDEISKNLGIGASTLHKWIKLFTETGEFGRGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK
>NC_017465.1|WP_041812709.1|883109_883475_-|hypothetical-protein
MPADHRYIQPQSAKEAMELIQKLFNSYRNAPLTSELLNYHNNLVARLNDDIMAAATTEGPKRVEQLTGMIELMQAWTRIRLSGRPFLGKMRHFKLEDGNQPKYKCRVHKINGTSNHRASRH
>NC_017465.1|WP_014562321.1|883600_884647_+|heat-inducible-transcriptional-repressor-HrcA
MLTKRQEEVLQAIVRQYTTTGQPVGSKALVDHLAKKVSSATIRNEMAVLEHEGLATKEHSSSGRVPSKLGYRYYVDHLLDPLSVTENDLIVIQNSLGTEYQKIDEIVSHSADLLSNLTSYTAFTLKPEQKDARLSGFRLVPLGNKKVIAILVTDTGDVESQSFTLPRGIDTEAMEAVIRLINDQLTGLTLPEVVKRLVTDIPLQVTRYLHQPEGFLNIFDSVASRAAHERLFVGGRLNLLGFANQQNPAAVQDLYALLDHGNNLQAILDPDDEHDISVRIGNEIADNQVLDDYSLITAKYQVDQYGEGIIAVLGPTRMPYARTIGLVDSFRRELAKRLLDHYRRYYDS
>NC_017465.1|WP_014562322.1|884657_885245_+|nucleotide-exchange-factor-GrpE
MAKDEEKNSQASAAPNEGEVKAKQEQTSAKEPAAKAGETEKVAALQKQVEELTKQLDDQKDQNLRAQAEMQNMTKRFKKEQAQLLKYDGQDLAKGILPVLDNLKRALEIEVEDENGQQLKKGIQMVHDHLEKALADHDIKEVEALNQPFDPTTQQAVQTVAASGDQKPDTVVQVLQAGYVLHDRVLRPAMVIVAQ
>NC_017465.1|WP_014562323.1|885282_887139_+|molecular-chaperone-DnaK
MASNKIIGIDLGTTNSAVAVMEGNEPKIITNPEGGRTTPSVVSFKNGEVQVGEVAKRQAITNPNTVKSIKSHMGEAGYTVDIEGKKYTPQEISAMILQYIKKYAEDYIGDTVTEAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTASSLAYGLDKKDRDEKILVYDLGGGTFDVSILELGDGVFQVLSTNGDTHLGGDDFDQKIMDWLIDGFKQENGIDLSQDKMALQRLKDAAEKAKKDVSGVQEAQISLPFITSGDNGPLHLEKTLTRAQFNQLTNDLVERTKQPVLNALKDAELSFSDIDEVILNGGSTRIPAVQEMVKSLTGKEPNHSINPDEAVALGAAIQGGVLTGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGNFQLTDIPPAPRGVPQIKVTFDIDKNGIVNVSAEDQGTHKKQNITIKSNSGLSDEEIERMKKDAEANAEADKKKKEEADVRNETDQLLFQTDKTLEELKGKVSDDEIKKAQDAKDALQKAKDDNNLEDMKAKKDDLNKIVQDLTVKLYQQAQQENQADGGQPTGDQGDGKKDDDNTVDGDFEEVNPDDKK
>NC_017465.1|WP_003681896.1|889393_889561_+|hypothetical-protein
MLTRRILPCLNVIDGRVKKRLLGSERLLDVGDPVELAFKYQENGTDGLVFITDPK
>NC_017465.1|WP_041812712.1|889579_890146_+|imidazole-glycerol-phosphate-synthase
MLDMVEAISQQVFMPMTVVCNVRTVAEVRNLLLAGADKVGISTRSIMAPDFIPKVAQVFGNQSIVAMLDYHVDPRTNRKIVCTPGNTELDAYEWALRVVELGVGELLVNSMDRDGTENGFDTAFYRDLTTTLTIPVVASGGAGSTADFEEVFVNSGVTGAMAASAFHLDQMTISEVKETLLEKGILVX
>NC_017465.1|WP_014562326.1|890353_891193_+|histidinol-phosphatase-HisJ
MKVDGHTHTELCPHGSGDHLEAMVERAIELGFTDYWVTEHAPLPVNFSDAFGGPLDDIQTASLRIDQVDDYLELANQIKERFAAQIKVHIGFELDYLAGFEADRRHFWDHYGPQVDGGILSVHYLPGRDGRYYGVDYSPEELEQGFXELITXPQELYRYYFSQLQRAVNCDLGPNAPKRLGHLTLIKKYQDRFGLDTDFDATTWQAIERLLAQMVADDWEIDFNTAGLFKADCNDFYPGWEIAARAKELGLPLVFGSDAHATVEVGHAYHLFEKFSQKV
>NC_017465.1|WP_014562327.1|892668_893283_+|ATP-phosphoribosyltransferase
MLKIALTKGRAEEQFTALLAQRGFDTSPLENKQRRLIIEVADQFEFILAKGPDVLTYLTNGVVDLGIVGSDILMEQDAESDELLDLKTGQCQFILASTEDFDPDRPGRKVIGTKYPRVAQRYFARRGQDVAIIKLEGSVELAPLIGLADAIIDITETGRTLKENHLVIYDRLDQVSTRLVANPLALKQKRDEIYRFVTTLKGGN
>NC_017465.1|WP_012391115.1|894570_895155_+|imidazoleglycerol-phosphate-dehydratase-HisB
MRTATIKRQTKETQIEVSLNLDQQSGIQIDTGVGYFDHMLNLLAKHGRFGLVVKATGDLEVDAHHTVEDTGIVLGETLKEALGDKVQIERYGDAMVPMDETLAQVVVDLSGRSYLVFDAELTNPRLGSFETEVTEDFFQALAFAAEMNLHARVLYGRNTHHKIEALFKATGRALRQAVTINPAIEGVNSTKGVI

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Crispr_ID: NC_017465_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017465_5

1394541-1394782

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	CRT
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	PILER-CR
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACC	CRISPRCasFinder

3 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_017465_5

>merge|NC_017465|5|1394541-1394782|CRT,PILER-CR,CRISPRCasFinder
TGACAGGGGACCACACCCCCGCGAAGGAGTGCGACAAACTGGTCGGCGGCGTCGATATACGACTGAAGCATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACTACCCTCAATTTGGGCGTTTTGACCTGTCGCATCATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACCAAGCCAAGGCTTGACGAACTTCCAAGCAAATAATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACC

>NC_017465|5|3|1394541-1394781|CRT
TGACAGGGGACCACACCCCCGCGAAGGAGTGCGAC	AAACTGGTCGGCGGCGTCGATATACGACTGAAGC
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	TACCCTCAATTTGGGCGTTTTGACCTGTCGCATC
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	CAAGCCAAGGCTTGACGAACTTCCAAGCAAATA
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC

>NC_017465|5|3|1394610-1394781|PILER-CR
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	TACCCTCAATTTGGGCGTTTTGACCTGTCGCATC
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC	CAAGCCAAGGCTTGACGAACTTCCAAGCAAATA
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGAC

>NC_017465|5|5|1394610-1394782|CRISPRCasFinder
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACT	ACCCTCAATTTGGGCGTTTTGACCTGTCGCATC
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACC	AAGCCAAGGCTTGACGAACTTCCAAGCAAATA
ATTTCAATCCACGCACCCCCGCGAAGGAGTGCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017465.1\|WP_012391420.1\|1391665_1392631_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_017465.1\|WP_041813072.1\|1399726_1400476_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NC_017465.1\|WP_014562515.1\|1379507_1380641_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|237646
NC_017465.1\|WP_012391426.1\|1396928_1397807_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NC_017465.1\|WP_012391425.1\|1396268_1396925_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_017465.1\|WP_014562511.1\|1370184_1371480_-\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NC_017465.1\|WP_041807812.1\|1393315_1393603_+\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_017465.1\|WP_012391429.1\|1400535_1401756_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_017465.1\|WP_014562516.1\|1380850_1382038_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NC_017465.1\|WP_003683269.1\|1369364_1370093_-\|DnaD-domain-protein	unknown	unknown	gnl\|CDD\|226445
NC_017465.1\|WP_014562519.1\|1385175_1386093_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NC_017465.1\|WP_014562522.1\|1401786_1404261_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_017465.1\|WP_003688751.1\|1405396_1405684_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NC_017465.1\|WP_014562523.1\|1404494_1405373_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_017465.1\|WP_003683913.1\|1384137_1384944_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NC_017465.1\|WP_012391427.1\|1397828_1399730_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_017465.1\|WP_012391422.1\|1393626_1394505_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_017465.1\|WP_012391423.1\|1394940_1395231_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_017465.1\|WP_012391424.1\|1395240_1396272_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_017465.1\|WP_004563226.1\|1371506_1372025_-\|DUF5590-domain-containg-protein	unknown	unknown	gnl\|CDD\|227656

Protein	Function_ID	Function_description	E-value
NC_017465.1\|WP_012391420.1\|1391665_1392631_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.63046e-157
NC_017465.1\|WP_041813072.1\|1399726_1400476_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	2.18835e-84
NC_017465.1\|WP_014562515.1\|1379507_1380641_-\|IS30-family-transposase	gnl\|CDD\|237646	PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional.	1.14878e-103
NC_017465.1\|WP_012391426.1\|1396928_1397807_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	3.91148e-101
NC_017465.1\|WP_012391425.1\|1396268_1396925_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	8.79659e-32
NC_017465.1\|WP_014562511.1\|1370184_1371480_-\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NC_017465.1\|WP_041807812.1\|1393315_1393603_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.11175e-06
NC_017465.1\|WP_012391429.1\|1400535_1401756_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.09905e-129
NC_017465.1\|WP_014562516.1\|1380850_1382038_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	6.76107e-112
NC_017465.1\|WP_003683269.1\|1369364_1370093_-\|DnaD-domain-protein	gnl\|CDD\|226445	COG3935, DnaD, Putative primosome component and related proteins [DNA replication, recombination, and repair].	7.88732e-29
NC_017465.1\|WP_014562519.1\|1385175_1386093_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	6.5475e-162
NC_017465.1\|WP_014562522.1\|1401786_1404261_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.45504e-58
NC_017465.1\|WP_003688751.1\|1405396_1405684_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.28825e-07
NC_017465.1\|WP_014562523.1\|1404494_1405373_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	5.54889e-62
NC_017465.1\|WP_003683913.1\|1384137_1384944_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.47061e-70
NC_017465.1\|WP_012391427.1\|1397828_1399730_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.27724e-131
NC_017465.1\|WP_012391422.1\|1393626_1394505_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.87432e-61
NC_017465.1\|WP_012391423.1\|1394940_1395231_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.85272e-28
NC_017465.1\|WP_012391424.1\|1395240_1396272_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	8.88696e-163
NC_017465.1\|WP_004563226.1\|1371506_1372025_-\|DUF5590-domain-containg-protein	gnl\|CDD\|227656	COG5353, COG5353, Uncharacterized protein conserved in bacteria [Function unknown].	1.00534e-32

>NC_017465.1|WP_012391422.1|1393626_1394505_+|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYIPVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKTKHSRHISKPLIMHSDRGSQFTSEAYNQVTANMTLSCSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYQTQIQNLVVA
>NC_017465.1|WP_041807812.1|1393315_1393603_+|transposase
MTKHSYDKEFKEQAVQYYLDNKDHMTMNEISKNLGIGASTLHKWIELFTETGEFGRGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK
>NC_017465.1|WP_012391420.1|1391665_1392631_-|aspartate-carbamoyltransferase-catalytic-subunit
MTTQLVEQLVSLPHFVSVEDLTTDQVNALIARAEEFKNGAPAPELSQPVYVTNMFFENSTRTHTSFAMAEKKLGLTEIPFDASHSSIKKGETLYDTCLTLDALGVDLTVIRASENDYYLPLINPGAGHYLGLGIVNGGDGSGQHPSQCMLDIMTIHEHFGHFKGLKVAIVGDITHSRVARSNMEILNKLGAEVYFSGPEYWYDHAFDKYGKFLPIDELVEEVDVMMLLRVQHERHAGDAHEGDFSAADYHKQYGINEERYALLKPDTIIMHPGPINRGVELADSLVEAPKSAFVAQMGNGVFMRMAMLEAVLRGRKLGGLE
>NC_017465.1|WP_014562519.1|1385175_1386093_-|dihydroorotate-dehydrogenase
MTNRLAVSLPGLNMTNPLMPASGTFGFGDAWGADQVNFNDLGALVIKTTTPEARTGNPQPQIAKLNDGVMNAVGLTNPGVDAVIKEKLPNLAKQYPDLPVVGSIGGSTETDYVLVAEKLAKSGLVSALELNVSCPNVAHGGMAFGTDAKVLESLTNQVKRVVGDVPLYVKLTPNVTDITEVARGAEAGGADGLSLINTVLGLHIDIRTGQPVLGNGMGGYSGTAVKPLAVRMVYQVARATKLPIIGMGGIETAADVLEFMMAGASAVAVGAAHFKDIAACPHIAAQLPALMDELGIKTLAELKRI
>NC_017465.1|WP_003683913.1|1384137_1384944_+|Cof-type-HAD-IIB-family-hydrolase
MDQHLIALDMDGTTLNNQSKLTDHTVSTLRRLANDGHLVVIVTGRPWLISAHLYDQIGLKSPIINFNGALAHLPYQNWKHEYAIKVTRELTLDMLESRRELGVQTLIAEDKHHVWADHPSNELPEFLPAQLSDDQILNERNLTDNPIALTIQFDPAKKDAIINRVNERYGDFVEPRVWGGGYSIMELIHRGTHKETALSYLAHHFQIDRQHIVAFGDEQNDLEMIDFAGHGVAMKNAIPELKAVAKDVTTLDNEHDGVADYLEKYFQL
>NC_017465.1|WP_014562516.1|1380850_1382038_-|IS256-family-transposase
MNQFNKDIIAALSSDKDITLNEVLRRQIEVAANQFLQNELTAVLGYEPHTRIDRLKDDVNYRNGTYTRTIDTEYGEINLTIPRDRLNKFQNALFPPYVRRTDGLEEMVIKMYSKGVTTREIADMVERMYGHYYSPTTVSNITKRTEHLVEEFHERKFKYSQYVCVFLDATYIPLRRGTVEREAVNVAIGIRSDGGKEVLDYSIAPTENGAAWSELLQGLRARGIKDIQLFIADGLVGLQSXIEANYPQAKFQRCWVHAERNLLGYVCKNDRREIITDFKAIRQAENLQAAKERLAAFSAKWESSYKRRIKNLVQMEELFTFFSFPTAIRQTIYSTNLIESFNKSLKKMVRRKEQFPNEGALDRFIMTQVMEYNDKFENRAHRGFKDCHDTLDSMF
>NC_017465.1|WP_014562515.1|1379507_1380641_-|IS30-family-transposase
MGTTILSFEDRVVIETLHHEKHSLQYIADYLGFSKTTIFNEVHRLAGEYHAVKAQTDHEVKLSHRGCKTILTTNLKRLIEEKIKIQKWSIEQVAHVVRIAYKIIYNWIDQGLLDINVTDLPNHGIRRKRAKETRGTFSHGRSIEDRPAEISDRNTSGHFEADTVLSGKRKGQAVATFVERKSRLTIVKRLNGRDSTVDINTATTDVYRVRQKIGMVFQHPNPFARSIRENLLLAPKQYGMKDKQEMDAIVERVLKDVALWDEVKDDLDKSALALSGGQQQRLCIARTLAVDPDILLLDEPASALDPLSTAKLEETLARLKEGRTIIIVTHNLEQASRISNYYAFFHMGHMLEYNETATMFAKPHLQATEDYLTGSFG
>NC_017465.1|WP_004563226.1|1371506_1372025_-|DUF5590-domain-containg-protein
MQSRRDVQRQQSRRSFKKTVRNIVVTLLLVILVTWSVYAIANHPRAAAQKQATAMAKKYAGLKSTSGFYIYNRDQTYYTVAGKNAKGQTILVVVPQKGGDIRVLKQSAGLTASQAKSEVKTADNPKRVLKVAMGIFNNKPVWEVTYLNQKGNLCYDLISFTSGKSIQQINNL
>NC_017465.1|WP_014562511.1|1370184_1371480_-|asparagine--tRNA-ligase
MQTINIIDAPKHVNERVRIGVWLTDKRSSGKIAFLQLRDGTAFFQGVLLKNKVDEETFEMARHLRQEVSLWVTGEIHEDTRSKFGYEIQIEELELIGDSDEYPIGNKEHGIDFLLDHRHLWLRSSKPQAMMRIRDRVIRANYEFFGEHGFTKIDPPILTGNAPEGTTDLFHTEYFDQDAYLSQSGQLYEEAGAMALNRVYSFGPVFRAEKSKTRRHLIEFWMIEPEMAFMHQEESLELQEQYVAYLIQKVIDDCSRELEVLGRDPETLKPFTQLPYPRISYDEAIEMLQKAGMDIKWGEDFGSPEETYLADQFSKPVFVLNYPKAIKPFYMKGHPTRDDVYVCADLLAPEGYGEIIGGSERETDYETLRQAIADAGLDEKDYQWYLDLRKYGSVPHSGYGLGLERFLTWIALQGHVRETIPFPRLLNRLYP
>NC_017465.1|WP_003683269.1|1369364_1370093_-|DnaD-domain-protein
MAENQFLMTMLEAGSTNVSNLLLHHYHDIDMTTGELMVYLELKSYIDRGNPTPDLELVADHLGTSSKQVFELVHQMTKKNLVEQRLRRQPDGKEDAYYDFTPLYDRLARAVNHERVVNEQKQADLSRSELFNQIQVEFGRTISPMEMQTVNQWLDEDHYQLDLVQLALKEAVLAGKYNLKYIEGILRRWRQSRLTTPQQVMADKHQYELAREQRGEGRPGSTSDKPLVLKASLKKLHPDQTE
>NC_017465.1|WP_012391423.1|1394940_1395231_-|CRISPR-associated-endonuclease-Cas2
MLVIVSYDVNTEDPTGRRRLRHVAKICKDYGQRIQKSVFECNVDSTKLTVLKQRLLAEYDEDTDSLCFFNLGNKYQNKVSHYGSNSVVNLDEPVIF
>NC_017465.1|WP_012391424.1|1395240_1396272_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVNTPNAYLASEGNNVKIIIDQDCVGQLPLQNFESIVTFGYAGASSGLMQKCLNQGIALSFMQPNGQIKGRVSGKPTGNVYLRRTQFRVADDDQAKLKLARNFILGKVFNQRWVIERFIRDHGMQVDQAKLKAVSVTLKDGLDKIQRAVDMESLRGIEGNLATEYFSVINDLIINQIEAFSFHDRIRRPPLDRVNALMSFAYSLLANECGGALIVNGLDPYVGFMHVDRPGREGLALDLMEELRAVIADRFVLRMINLKILRSSDFKQAPDGAVLLTDEARKKFLTKWHENEQKTLQHPYLNEKIEWGLVPFAQSQLLARCLRGDLDEYPPFLWK
>NC_017465.1|WP_012391425.1|1396268_1396925_-|CRISPR-associated-protein-Cas4
MAYDNDDILQISGIQHFIFCRRQWALAYLENSWVENYLTLTGDELHKKVDNPFIKESRNAKFIERAMRINSRRLGLSGICDVVEFIENPDGVRIFGKSGEYLPIPVEYKRGKQKSDHSDELQLLAEAVCLEEMLYCHLDYGYLYYGQTKHRERVEFSKELRDELNKAVAEMHRYWEKKYTPRVKPSKKCRSCSLKDICLPELLKTEKVSDYIKRRLEG
>NC_017465.1|WP_012391426.1|1396928_1397807_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAEVLNHRIDFKVVIAAAGANPNGDPLNGNRPRQTSDGYGEISDVAIKRKVRNRLQDLGNKVFVQSADRADDEAKSLKERVESNDELKKLMDAGDNEGFAEAADNTWIDVRSFGQVFAFKGKGKSKGVSVGVRGPVSITRARSIAPIAINDMQITKSVNGETTEGRGSDTMGMKYSVDFAVYEFSGSINVQLAEKTGFTDEDAGMIHQALETLFDNDESSARPAGSMEVLRVYWWEQEGKLGKVAPAKIFRTVKVTPKEGTFDVRDFDDVDFTSADQAATEIEGAMCDIYRG
>NC_017465.1|WP_012391427.1|1397828_1399730_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWMSELVDLYDRNQNKAGKVTNVKRRGKNGETVLKPVFLLPINHVSNYVEIEIKLNLDGDFVGAEVINKEKTIMPVTIESAARTSGIRPRPVDDKFQYIARDYNQLQEVLEAKREAGEHKDKPYKQDGDFDEYLQQLTDFFEFTKEHSKTVAPLLMAIQKYVANNDLIIDLIHSGQFGELDSYEDIDEKSILANNPLCRFNVLTEGPVRWKNPECFKAWSDFYQFKLAKEGKTGFDYVAGNEHVPLGTNHPKGILPLASGAKLISSNDTQNFTFRGRFINSEEAVSIGYESSQKGHAMLKWLIDKQGFSIGGRYYITWGTTGENLTTINPQDNELFNDILSLDDEIEDTNSAFASQLRNLLLKGASVNGIPKQNPVYVMQLEGTTTGRFGIVYYQALDLTTYIERITDWYTKLYLKCDDNKYIYPSLKFIADRIYGDRNDETTQKLKKDVVTDLVQSILGGRKISYSYLSKIFQKSIRPTSFDNQSAWKLTVTTAARLFKSYFSREEIEPMLNTDFKDRSYLYGRLLAIADVVEQGVLGANGQDRSTNARRYMSAFSQRPADTWKVIYVNLQPYLTKSNYRQKAQRLFDEINEKFDVTDSQLNSPLDGKFLIGYSQQRTDWYKSSKSKSEVE
>NC_017465.1|WP_041813072.1|1399726_1400476_-|type-I-C-CRISPR-associated-protein-Cas5
MSNEFXRHSTTXCFQVDGDFALFTDPITKIGGEKFTYPVPTYQALKGIAESIYWKPTFQIVIDKVRIMKPIITEARDIRLMKYNRTGASDLARYTYLRDVSYQVQAHLEWNEQRVDLMKDRNANKHYAIMKRSIARGGRRDIFLGTRECQGFVEECRFGQGSGYYDDSDDRLFGTMLHGFDYPDETGEDYLGLRLWNVVMKKGIIEFPPPTDLQLHRRKLHELEAKKFTLDDIQSVDDTYEELLGGEDE
>NC_017465.1|WP_012391429.1|1400535_1401756_-|IS256-family-transposase
MPKVELNLEDDELKELLLGDRDKAMQSIMAKILDEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGTLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCNNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSESKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAVERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWAAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
>NC_017465.1|WP_014562522.1|1401786_1404261_-|CRISPR-associated-helicase/endonuclease-Cas3
MDFISHTVEGSTDFQLLREHLINAKNLAEDYGTDIDIPKVTGLAALLHDLGKYRVAFQEYIQNGVGHHGSVDHSSFGAYFIHQFINEHSQAESEKDRLYLTWFGETIENAIMSHHNSLGLKDFVDAHVNSPFLKRLNKVEEDPELKDELQRVIQRFFQEVMGEKEISDYFDQAYKEFSLLIDKCFSQDKKTLLSNLFFIETYVYSCVLDADRTDTATFSLDQPVKRYDYSAVFEDYYQKLNRQLAGMNSEKEINQLRSAMSDECDDFAEKRDGIYQLSIPTGGGKTLAGMRYGLKRSILSHKKHIFGVLPLITIIEQNARVYRETFNGDRLDNQNILEFHSNVAQELRSNKEKDDLLDLAEDSWNSPITVTTMVQFLNCIFASGTTNRRRFHNLCNSVIILDEVQKVPVKCLSLFNKAINFLKEVGHCSILLCTATQPALGDLKASLKIDGEIIQDLSQRQEDFKRVKFTDLTRQGIQEHPISSQELAELITYKFNDSQRILVILNTIGAVNQLAENLDSGQLNCKVYALTTRMCAAHRQKLIKEIKDRLAQKLPTICVSTPLIEAGVDISFETVYRSVCGLDSIVQAAGRCNRNGERDRGDVYLVLLNKDSEKLDKLREIKWGQKIVLNMLAQKDFDPDSLLQTKVINNYFDHFYQEIDQSELSGYPTSDEGRDIHLADYIEGKQASRDYLQQNSGSELKAFSGSETIAKHFEVIDQETVSVLVPYGKGSDFIALLNSQNYQDSLSEIFKEVQPYLVNVFKNMLRGLIEKEVVYPIEFPFSDREVYTVRDSYYQEESGLNYQIKNSESXTXIGYVRIIGVNSK
>NC_017465.1|WP_014562523.1|1404494_1405373_-|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSLRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYIPVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKAKHSRHISKPLIMHSDRGSQFMSEAYNQVTANMTLSYSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYQTQIQNLVVA
>NC_017465.1|WP_003688751.1|1405396_1405684_-|transposase
MTKHSYDKEFKEQAVQYYLDNKDHMTMNEISKNLGIGASTLHKWIKLFTETGEFGRGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	801886-801916	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	803842-803872	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	1347690-1347720	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	1393235-1393265	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	1405735-1405765	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	1601916-1601946	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	1616056-1616086	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	1663644-1663674	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	1777650-1777680	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_017465.1	1616313-1616343	1	0.968

1. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 801886-801916, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

2. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 803842-803872, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

3. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 1347690-1347720, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

4. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 1393235-1393265, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

5. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 1405735-1405765, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

6. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 1601916-1601946, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

7. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 1616056-1616086, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

8. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 1663644-1663674, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

9. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 1777650-1777680, mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

10. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to position: 1616313-1616343, mismatch: 1, identity: 0.968

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggtctagaataaaaagtgtacaagttaaa	Protospacer
****.**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017465_3	3.12\|820918\|33\|NC_017465\|PILER-CR	820918-820950	33	GU323708	Lactobacillus phage phiPYB5, complete genome	7411-7443	0	1.0
NC_017465_3	3.35\|820919\|32\|NC_017465\|CRISPRCasFinder,CRT	820919-820950	32	GU323708	Lactobacillus phage phiPYB5, complete genome	7411-7442	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP015861	Lactobacillus plantarum strain LZ227 plasmid LZ227p3, complete sequence	27431-27461	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP035135	Lactobacillus plantarum strain SRCM103311 plasmid unnamed4	44248-44278	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP019032	Lactobacillus fermentum strain SNUV175 plasmid pSNU175-3, complete sequence	23674-23704	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP029548	Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence	55094-55124	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP029548	Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence	1337-1367	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP029548	Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence	35705-35735	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP029548	Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence	52649-52679	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP032360	Lactobacillus plantarum strain ZFM55 plasmid unnamed1, complete sequence	27808-27838	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP018212	Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_3, complete sequence	32959-32989	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP043940	Lactobacillus nenjiangensis strain SH-Y15 plasmid pHY011, complete sequence	23283-23313	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP032643	Lactobacillus plantarum strain ZFM9 plasmid unnamed1, complete sequence	44328-44358	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	43117-43147	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP018179	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-3, complete sequence	31547-31577	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP018182	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-2, complete sequence	30401-30431	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP028244	Lactobacillus plantarum strain SRCM101518 plasmid unnamed3, complete sequence	30463-30493	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP054261	Lactobacillus plantarum strain TCI507 plasmid unnamed2	15620-15650	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	MN830253	Lactobacillus phage JNU_P5, complete genome	32972-33002	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP032753	Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed2, complete sequence	20436-20466	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP011405	Lactobacillus salivarius str. Ren plasmid pR2, complete sequence	33388-33418	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	CP033373	Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence	237163-237193	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	CP033373	Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence	249367-249397	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP032745	Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence	33308-33338	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP012651	Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK03, complete sequence	21474-21504	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_LN898145	Lactobacillus oligofermentans DSM 15707 = LMG 22743 isolate LACOL plasmid II, complete sequence	42909-42939	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	11362-11392	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	31820-31850	0	1.0
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP013152	Lactobacillus plantarum strain MF1298 plasmid pMF1298-4, complete sequence	35887-35917	0	1.0
NC_017465_3	3.9\|820735\|33\|NC_017465\|PILER-CR	820735-820767	33	HQ141410	Lactobacillus phage LF1, complete genome	38426-38458	1	0.97
NC_017465_3	3.11\|820857\|33\|NC_017465\|PILER-CR	820857-820889	33	GU323708	Lactobacillus phage phiPYB5, complete genome	30436-30468	1	0.97
NC_017465_3	3.32\|820736\|32\|NC_017465\|CRISPRCasFinder,CRT	820736-820767	32	HQ141410	Lactobacillus phage LF1, complete genome	38427-38458	1	0.969
NC_017465_3	3.34\|820858\|32\|NC_017465\|CRISPRCasFinder,CRT	820858-820889	32	GU323708	Lactobacillus phage phiPYB5, complete genome	30436-30467	1	0.969
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	20865-20895	1	0.968
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NC_021503	Lactobacillus reuteri I5007 plasmid pLRI01, complete sequence	21758-21788	1	0.968
NC_017465_2	2.13\|818352\|33\|NC_017465\|PILER-CR	818352-818384	33	GU323708	Lactobacillus phage phiPYB5, complete genome	31690-31722	2	0.939
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	GU323708	Lactobacillus phage phiPYB5, complete genome	31691-31722	2	0.938
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP040502	Lactobacillus paragasseri JV-V03 plasmid unnamed2, complete sequence	17007-17037	2	0.935
NC_017465_2	2.22\|817743\|32\|NC_017465\|CRISPRCasFinder,CRT	817743-817774	32	MN830252	Lactobacillus phage JNU_P1, complete genome	18398-18429	3	0.906
NC_017465_2	2.31\|818292\|32\|NC_017465\|CRISPRCasFinder,CRT	818292-818323	32	MN830252	Lactobacillus phage JNU_P1, complete genome	44275-44306	3	0.906
NC_017465_4	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	NZ_CP045730	Lactobacillus gastricus strain LG045 plasmid unnamed1, complete sequence	25375-25405	3	0.903
NC_017465_2	2.3\|817742\|33\|NC_017465\|PILER-CR	817742-817774	33	MN830252	Lactobacillus phage JNU_P1, complete genome	18398-18430	4	0.879
NC_017465_2	2.12\|818291\|33\|NC_017465\|PILER-CR	818291-818323	33	MN830252	Lactobacillus phage JNU_P1, complete genome	44274-44306	4	0.879
NC_017465_3	3.16\|821162\|33\|NC_017465\|PILER-CR	821162-821194	33	MN830253	Lactobacillus phage JNU_P5, complete genome	27018-27050	4	0.879
NC_017465_3	3.39\|821163\|32\|NC_017465\|CRISPRCasFinder,CRT	821163-821194	32	MN830253	Lactobacillus phage JNU_P5, complete genome	27018-27049	4	0.875
NC_017465_3	3.45\|821529\|32\|NC_017465\|CRISPRCasFinder,CRT	821529-821560	32	GU323708	Lactobacillus phage phiPYB5, complete genome	7328-7359	4	0.875
NC_017465_2	2.22\|817743\|32\|NC_017465\|CRISPRCasFinder,CRT	817743-817774	32	MG592499	Vibrio phage 1.124.O._10N.286.49.B1, partial genome	4933-4964	5	0.844
NC_017465_3	3.22\|821528\|33\|NC_017465\|PILER-CR	821528-821560	33	GU323708	Lactobacillus phage phiPYB5, complete genome	7328-7360	5	0.848
NC_017465_3	3.34\|820858\|32\|NC_017465\|CRISPRCasFinder,CRT	820858-820889	32	MN830252	Lactobacillus phage JNU_P1, complete genome	42112-42143	5	0.844
NC_017465_2	2.36\|818598\|32\|NC_017465\|CRISPRCasFinder,CRT	818598-818629	32	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	18906-18937	6	0.812
NC_017465_2	2.36\|818598\|32\|NC_017465\|CRISPRCasFinder,CRT	818598-818629	32	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	18905-18936	6	0.812
NC_017465_2	2.36\|818598\|32\|NC_017465\|CRISPRCasFinder,CRT	818598-818629	32	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	18905-18936	6	0.812
NC_017465_2	2.36\|818598\|32\|NC_017465\|CRISPRCasFinder,CRT	818598-818629	32	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	18905-18936	6	0.812
NC_017465_3	3.29\|820552\|32\|NC_017465\|CRISPRCasFinder,CRT	820552-820583	32	NZ_CP050268	Salinivibrio costicola strain M318 plasmid pM138.1, complete sequence	30871-30902	6	0.812
NC_017465_3	3.36\|820980\|32\|NC_017465\|CRISPRCasFinder,CRT	820980-821011	32	NC_025829	Shigella phage pSs-1, complete genome	161354-161385	6	0.812
NC_017465_2	2.21\|817682\|32\|NC_017465\|CRISPRCasFinder,CRT	817682-817713	32	MK448885	Streptococcus phage Javan252, complete genome	22866-22897	7	0.781
NC_017465_2	2.31\|818292\|32\|NC_017465\|CRISPRCasFinder,CRT	818292-818323	32	NC_048682	Raoultella phage Ro1, complete genome	55619-55650	7	0.781
NC_017465_2	2.31\|818292\|32\|NC_017465\|CRISPRCasFinder,CRT	818292-818323	32	MK024806	Proteus phage Mydo, complete genome	66701-66732	7	0.781
NC_017465_2	2.31\|818292\|32\|NC_017465\|CRISPRCasFinder,CRT	818292-818323	32	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	72670-72701	7	0.781
NC_017465_2	2.37\|818659\|32\|NC_017465\|CRISPRCasFinder,CRT	818659-818690	32	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	206579-206610	7	0.781
NC_017465_3	3.24\|820247\|32\|NC_017465\|CRISPRCasFinder,CRT	820247-820278	32	GU943074	Uncultured phage MedDCM-OCT-S08-C964 genomic sequence	11419-11450	7	0.781
NC_017465_5	5.5\|1394715\|32\|NC_017465\|CRISPRCasFinder	1394715-1394746	32	NZ_KM017071	Sphingomonas sp. JE1 plasmid pJE1, complete sequence	128926-128957	7	0.781
NC_017465_2	2.2\|817681\|33\|NC_017465\|PILER-CR	817681-817713	33	MK448885	Streptococcus phage Javan252, complete genome	22865-22897	8	0.758
NC_017465_2	2.5\|817864\|33\|NC_017465\|PILER-CR	817864-817896	33	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	6901-6933	8	0.758
NC_017465_2	2.18\|818658\|33\|NC_017465\|PILER-CR	818658-818690	33	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	206579-206611	8	0.758
NC_017465_2	2.20\|817621\|32\|NC_017465\|CRISPRCasFinder,CRT	817621-817652	32	MN694574	Marine virus AFVG_250M706, complete genome	47561-47592	8	0.75
NC_017465_2	2.24\|817865\|32\|NC_017465\|CRISPRCasFinder,CRT	817865-817896	32	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	6902-6933	8	0.75
NC_017465_2	2.28\|818109\|32\|NC_017465\|CRISPRCasFinder,CRT	818109-818140	32	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	29508-29539	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349325	Cyanophage S-RIM12 isolate W1_24_0910, complete genome	48813-48844	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	NC_049384	Enterobacter phage EspM4VN DNA, complete genome	128982-129013	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349326	Cyanophage S-RIM12 isolate WH_05_0310, complete genome	50513-50544	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349327	Cyanophage S-RIM12 isolate WH_07_0310, complete genome	50763-50794	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349322	Cyanophage S-RIM12 isolate Sn_31_0910, complete genome	48818-48849	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349310	Cyanophage S-RIM12 isolate RW_01_0310, complete genome	48710-48741	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349321	Cyanophage S-RIM12 isolate Sn_07_0910, complete genome	48710-48741	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349324	Cyanophage S-RIM12 isolate W1_12_0610, complete genome	51132-51163	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349308	Cyanophage S-RIM12 isolate Np_15_0310, complete genome	50512-50543	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	LC373201	Enterobacter phage phiEM4 DNA, complete genome	128982-129013	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349311	Cyanophage S-RIM12 isolate RW_04_0310, complete genome	50510-50541	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349323	Cyanophage S-RIM12 isolate W1_08_0910, complete genome	49460-49491	8	0.75
NC_017465_2	2.29\|818170\|32\|NC_017465\|CRISPRCasFinder,CRT	818170-818201	32	KX349313	Cyanophage S-RIM12 isolate RW_06_0310, complete genome	49458-49489	8	0.75
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP020899	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence	266193-266224	8	0.75
NC_017465_3	3.6\|820551\|33\|NC_017465\|PILER-CR	820551-820583	33	NZ_CP050268	Salinivibrio costicola strain M318 plasmid pM138.1, complete sequence	30871-30903	8	0.758
NC_017465_3	3.39\|821163\|32\|NC_017465\|CRISPRCasFinder,CRT	821163-821194	32	NZ_AP019010	Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence	61553-61584	8	0.75
NC_017465_3	3.39\|821163\|32\|NC_017465\|CRISPRCasFinder,CRT	821163-821194	32	NZ_CP041128	Serratia marcescens strain WVU-005 plasmid pWVU-005-2, complete sequence	30785-30816	8	0.75
NC_017465_3	3.39\|821163\|32\|NC_017465\|CRISPRCasFinder,CRT	821163-821194	32	NZ_LT575491	Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence	77576-77607	8	0.75
NC_017465_3	3.39\|821163\|32\|NC_017465\|CRISPRCasFinder,CRT	821163-821194	32	NZ_CP027301	Serratia marcescens strain SGAir0764 plasmid unnamed_1	58479-58510	8	0.75
NC_017465_3	3.40\|821224\|32\|NC_017465\|CRISPRCasFinder,CRT	821224-821255	32	MK614706	Gammaproteobacteria virus GOV_bin_2604, complete genome	41635-41666	8	0.75
NC_017465_5	5.3\|1394714\|33\|NC_017465\|CRT,PILER-CR	1394714-1394746	33	NZ_KM017071	Sphingomonas sp. JE1 plasmid pJE1, complete sequence	128926-128958	8	0.758
NC_017465_2	2.1\|817620\|33\|NC_017465\|PILER-CR	817620-817652	33	MN694574	Marine virus AFVG_250M706, complete genome	47561-47593	9	0.727
NC_017465_2	2.9\|818108\|33\|NC_017465\|PILER-CR	818108-818140	33	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	29508-29540	9	0.727
NC_017465_2	2.12\|818291\|33\|NC_017465\|PILER-CR	818291-818323	33	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	72670-72702	9	0.727
NC_017465_2	2.12\|818291\|33\|NC_017465\|PILER-CR	818291-818323	33	NC_048682	Raoultella phage Ro1, complete genome	55618-55650	9	0.727
NC_017465_2	2.12\|818291\|33\|NC_017465\|PILER-CR	818291-818323	33	MK024806	Proteus phage Mydo, complete genome	66700-66732	9	0.727
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	333448-333479	9	0.719
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	261691-261722	9	0.719
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	250958-250989	9	0.719
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	327426-327457	9	0.719
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	261691-261722	9	0.719
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	327426-327457	9	0.719
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	327426-327457	9	0.719
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	327426-327457	9	0.719
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	327751-327782	9	0.719
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	KX066068	Pseudomonas phage VSW-3, complete genome	17880-17911	9	0.719
NC_017465_3	3.32\|820736\|32\|NC_017465\|CRISPRCasFinder,CRT	820736-820767	32	NC_007713	Sodalis glossinidius str. 'morsitans' plasmid pSG1, complete sequence	21416-21447	9	0.719
NC_017465_3	3.32\|820736\|32\|NC_017465\|CRISPRCasFinder,CRT	820736-820767	32	NZ_LN854558	Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG1, complete sequence	19646-19677	9	0.719
NC_017465_3	3.32\|820736\|32\|NC_017465\|CRISPRCasFinder,CRT	820736-820767	32	NZ_LN854558	Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG1, complete sequence	28859-28890	9	0.719
NC_017465_3	3.32\|820736\|32\|NC_017465\|CRISPRCasFinder,CRT	820736-820767	32	NC_007182	Sodalis glossinidius pSG1 plasmid from Glossina austeni	73595-73626	9	0.719
NC_017465_3	3.32\|820736\|32\|NC_017465\|CRISPRCasFinder,CRT	820736-820767	32	NC_007183	Sodalis glossinidius pSG1 plasmid from Glossina palpalis palpalis	73595-73626	9	0.719
NC_017465_3	3.32\|820736\|32\|NC_017465\|CRISPRCasFinder,CRT	820736-820767	32	NZ_AP019532	Serratia symbiotica strain IS plasmid pSsyis1, complete sequence	15835-15866	9	0.719
NC_017465_3	3.35\|820919\|32\|NC_017465\|CRISPRCasFinder,CRT	820919-820950	32	JQ691611	Cronobacter phage CR9, complete genome	24017-24048	9	0.719
NC_017465_3	3.40\|821224\|32\|NC_017465\|CRISPRCasFinder,CRT	821224-821255	32	NC_022739	Pseudomonas sp. VLB120 plasmid pSTY, complete sequence	17719-17750	9	0.719
NC_017465_3	3.40\|821224\|32\|NC_017465\|CRISPRCasFinder,CRT	821224-821255	32	MN855617	Myoviridae sp. isolate 527, complete genome	7579-7610	9	0.719
NC_017465_3	3.44\|821468\|32\|NC_017465\|CRISPRCasFinder,CRT	821468-821499	32	NZ_CP045320	Roseivivax sp. THAF197b plasmid pTHAF197b_b, complete sequence	37576-37607	9	0.719
NC_017465_3	3.44\|821468\|32\|NC_017465\|CRISPRCasFinder,CRT	821468-821499	32	NC_022753	Mycobacterium phage Fredward, complete genome	44508-44539	9	0.719
NC_017465_2	2.33\|818414\|32\|NC_017465\|CRISPRCasFinder,CRT	818414-818445	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	424562-424593	10	0.688
NC_017465_3	3.29\|820552\|32\|NC_017465\|CRISPRCasFinder,CRT	820552-820583	32	MT366947	Bacillus phage Hyb2phi3Ts-SPbeta, complete genome	52532-52563	10	0.688
NC_017465_3	3.29\|820552\|32\|NC_017465\|CRISPRCasFinder,CRT	820552-820583	32	KY030782	Bacillus phage phi3T, complete genome	52532-52563	10	0.688
NC_017465_3	3.29\|820552\|32\|NC_017465\|CRISPRCasFinder,CRT	820552-820583	32	MT366946	Bacillus phage Hyb1phi3Ts-SPbeta, complete genome	55131-55162	10	0.688
NC_017465_3	3.29\|820552\|32\|NC_017465\|CRISPRCasFinder,CRT	820552-820583	32	CP052843	Bacillus phage Hybphi3Ts, partial sequence	28905-28936	10	0.688
NC_017465_3	3.29\|820552\|32\|NC_017465\|CRISPRCasFinder,CRT	820552-820583	32	MT366945	Bacillus phage phi3Ts, complete genome	52532-52563	10	0.688
NC_017465_3	3.40\|821224\|32\|NC_017465\|CRISPRCasFinder,CRT	821224-821255	32	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	1057033-1057064	10	0.688
NC_017465_2	2.20\|817621\|32\|NC_017465\|CRISPRCasFinder,CRT	817621-817652	32	DQ003637	Listeria phage A500, complete genome	26381-26412	11	0.656
NC_017465_2	2.20\|817621\|32\|NC_017465\|CRISPRCasFinder,CRT	817621-817652	32	MN694796	Marine virus AFVG_250M264, complete genome	13440-13471	11	0.656
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_KX009060	Pseudomonas syringae pv. actinidiae strain RT594 plasmid pUR_RT594, complete sequence	45895-45926	11	0.656
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_KX009063	Pseudomonas syringae pv. actinidiae strain RT811 plasmid pPU_RT811, complete sequence	17841-17872	11	0.656
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_KX009062	Pseudomonas syringae pv. actinidiae strain B4A plasmid pUR_B4A, complete sequence	40223-40254	11	0.656
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_KX009061	Pseudomonas syringae pv. actinidiae strain RT652 plasmid pUR_RT652, complete sequence	51956-51987	11	0.656
NC_017465_2	2.32\|818353\|32\|NC_017465\|CRISPRCasFinder,CRT	818353-818384	32	NZ_CP017011	Pseudomonas syringae pv. actinidiae strain NZ-47 plasmid pPsa22180b, complete sequence	49231-49262	11	0.656
NC_017465_3	3.25\|820308\|32\|NC_017465\|CRISPRCasFinder,CRT	820308-820339	32	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	121554-121585	11	0.656

1. spacer 3.12|820918|33|NC_017465|PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 0, identity: 1.0

tcagtgcccacccggtggacgttagctctatcc	CRISPR spacer
tcagtgcccacccggtggacgttagctctatcc	Protospacer
*********************************

2. spacer 3.35|820919|32|NC_017465|CRISPRCasFinder,CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 0, identity: 1.0

cagtgcccacccggtggacgttagctctatcc	CRISPR spacer
cagtgcccacccggtggacgttagctctatcc	Protospacer
********************************

3. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP015861 (Lactobacillus plantarum strain LZ227 plasmid LZ227p3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

4. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP035135 (Lactobacillus plantarum strain SRCM103311 plasmid unnamed4) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

5. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP019032 (Lactobacillus fermentum strain SNUV175 plasmid pSNU175-3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

6. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP029548 (Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

7. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP029548 (Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

8. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP029548 (Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

9. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP029548 (Lactobacillus paracasei strain EG9 plasmid pEG9B, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

10. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP032360 (Lactobacillus plantarum strain ZFM55 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

11. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP018212 (Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

12. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP043940 (Lactobacillus nenjiangensis strain SH-Y15 plasmid pHY011, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

13. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP032643 (Lactobacillus plantarum strain ZFM9 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

14. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

15. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP018179 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

16. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP018182 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

17. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP028244 (Lactobacillus plantarum strain SRCM101518 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

18. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP054261 (Lactobacillus plantarum strain TCI507 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

19. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

20. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP032753 (Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

21. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP011405 (Lactobacillus salivarius str. Ren plasmid pR2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

22. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to CP033373 (Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

23. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to CP033373 (Lactobacillus fermentum strain DR9 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

24. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP032745 (Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

25. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP012651 (Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK03, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

26. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_LN898145 (Lactobacillus oligofermentans DSM 15707 = LMG 22743 isolate LACOL plasmid II, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

27. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

28. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

29. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP013152 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-4, complete sequence) position: , mismatch: 0, identity: 1.0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

30. spacer 3.9|820735|33|NC_017465|PILER-CR matches to HQ141410 (Lactobacillus phage LF1, complete genome) position: , mismatch: 1, identity: 0.97

ttgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
ttgctgacaaggtatttaagaacgccgagaaac	Protospacer
********************.************

31. spacer 3.11|820857|33|NC_017465|PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 1, identity: 0.97

ttaagccgtttagccattgcagcgttgctcata	CRISPR spacer
ttaagccgtttagccattgcagcattgctcata	Protospacer
***********************.*********

32. spacer 3.32|820736|32|NC_017465|CRISPRCasFinder,CRT matches to HQ141410 (Lactobacillus phage LF1, complete genome) position: , mismatch: 1, identity: 0.969

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
tgctgacaaggtatttaagaacgccgagaaac	Protospacer
*******************.************

33. spacer 3.34|820858|32|NC_017465|CRISPRCasFinder,CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 1, identity: 0.969

taagccgtttagccattgcagcgttgctcata	CRISPR spacer
taagccgtttagccattgcagcattgctcata	Protospacer
**********************.*********

34. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP054658 (Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence) position: , mismatch: 1, identity: 0.968

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtatacaagttaaa	Protospacer
*******************.***********

35. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NC_021503 (Lactobacillus reuteri I5007 plasmid pLRI01, complete sequence) position: , mismatch: 1, identity: 0.968

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtatacaagttaaa	Protospacer
*******************.***********

36. spacer 2.13|818352|33|NC_017465|PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 2, identity: 0.939

ccagataagatgacgatcatcacgaccaacaac	CRISPR spacer
caagacaagatgacgatcatcacgaccaacaac	Protospacer
* ***.***************************

37. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 2, identity: 0.938

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
aagacaagatgacgatcatcacgaccaacaac	Protospacer
 ***.***************************

38. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP040502 (Lactobacillus paragasseri JV-V03 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.935

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
taggtctagaataaaaagtgtacaagttaaa	Protospacer
*.**.**************************

39. spacer 2.22|817743|32|NC_017465|CRISPRCasFinder,CRT matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 3, identity: 0.906

atcagcttgtgctgcacttgccgatgatttag	CRISPR spacer
accagcttgtgctacactcgccgatgatttag	Protospacer
*.***********.****.*************

40. spacer 2.31|818292|32|NC_017465|CRISPRCasFinder,CRT matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 3, identity: 0.906

taaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
tgaatacttaaactacgaggtcaatgaaaaag	Protospacer
*.**************.*****.*********

41. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NZ_CP045730 (Lactobacillus gastricus strain LG045 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.903

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagtctta	Protospacer
***************************.  *

42. spacer 2.3|817742|33|NC_017465|PILER-CR matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 4, identity: 0.879

tatcagcttgtgctgcacttgccgatgatttag	CRISPR spacer
caccagcttgtgctacactcgccgatgatttag	Protospacer
.*.***********.****.*************

43. spacer 2.12|818291|33|NC_017465|PILER-CR matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 4, identity: 0.879

ttaaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
ctgaatacttaaactacgaggtcaatgaaaaag	Protospacer
.*.**************.*****.*********

44. spacer 3.16|821162|33|NC_017465|PILER-CR matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 4, identity: 0.879

cgacgttcataccgaggccattgtcagtccaag	CRISPR spacer
cgacgttcataccaagaccattgtcagtccatt	Protospacer
*************.**.**************

45. spacer 3.39|821163|32|NC_017465|CRISPRCasFinder,CRT matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 4, identity: 0.875

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
gacgttcataccaagaccattgtcagtccatt	Protospacer
************.**.**************

46. spacer 3.45|821529|32|NC_017465|CRISPRCasFinder,CRT matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 4, identity: 0.875

taagtattcttaaaggaggtcacacattactg	CRISPR spacer
taattattcttaaaggaggtcacacatcattc	Protospacer
*** ***********************.*.*

47. spacer 2.22|817743|32|NC_017465|CRISPRCasFinder,CRT matches to MG592499 (Vibrio phage 1.124.O._10N.286.49.B1, partial genome) position: , mismatch: 5, identity: 0.844

--atcagcttgtgctgcacttgccgatgatttag	CRISPR spacer
agatcggct--tgctgcacttgccaatggtttag	Protospacer
  ***.***  *************.***.*****

48. spacer 3.22|821528|33|NC_017465|PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 5, identity: 0.848

ttaagtattcttaaaggaggtcacacattactg	CRISPR spacer
gtaattattcttaaaggaggtcacacatcattc	Protospacer
 *** ***********************.*.*

49. spacer 3.34|820858|32|NC_017465|CRISPRCasFinder,CRT matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 5, identity: 0.844

taagccgtttagccattgcagcgttgctcata	CRISPR spacer
tgaacctcttagccattgcggcgttgctcata	Protospacer
*.*.** .***********.************

50. spacer 2.36|818598|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.812

--ttccagtcgtggaatcgatgctgaccgtcggt	CRISPR spacer
tcctccag--atggaatcgatgctgaccaccggt	Protospacer
  .*****  .*****************..****

51. spacer 2.36|818598|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.812

--ttccagtcgtggaatcgatgctgaccgtcggt	CRISPR spacer
tcctccag--atggaatcgatgctgaccaccggt	Protospacer
  .*****  .*****************..****

52. spacer 2.36|818598|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.812

--ttccagtcgtggaatcgatgctgaccgtcggt	CRISPR spacer
tcctccag--atggaatcgatgctgaccaccggt	Protospacer
  .*****  .*****************..****

53. spacer 2.36|818598|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.812

--ttccagtcgtggaatcgatgctgaccgtcggt	CRISPR spacer
tcctccag--atggaatcgatgctgaccaccggt	Protospacer
  .*****  .*****************..****

54. spacer 3.29|820552|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP050268 (Salinivibrio costicola strain M318 plasmid pM138.1, complete sequence) position: , mismatch: 6, identity: 0.812

agctaat---gatttctttggtagcgtcagccagg	CRISPR spacer
---taattgggatatctttggtagcggcagccagt	Protospacer
   ****   *** ************ *******

55. spacer 3.36|820980|32|NC_017465|CRISPRCasFinder,CRT matches to NC_025829 (Shigella phage pSs-1, complete genome) position: , mismatch: 6, identity: 0.812

accggcg--ggcgaagttggtcaacctcgtcatt	CRISPR spacer
--tggcggtggtgaagttggtcaacctggtcaat	Protospacer
  .****  **.*************** **** *

56. spacer 2.21|817682|32|NC_017465|CRISPRCasFinder,CRT matches to MK448885 (Streptococcus phage Javan252, complete genome) position: , mismatch: 7, identity: 0.781

ttttgcagggttcgctagtgatggcaaaggtg	CRISPR spacer
gctagtagggttcgttaatgatggcaaaggcg	Protospacer
 .* *.********.**.************.*

57. spacer 2.31|818292|32|NC_017465|CRISPRCasFinder,CRT matches to NC_048682 (Raoultella phage Ro1, complete genome) position: , mismatch: 7, identity: 0.781

-----taaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
gctcataa-----taatctacaaggtcgatgaaagag	Protospacer
     ***     *** *****************.**

58. spacer 2.31|818292|32|NC_017465|CRISPRCasFinder,CRT matches to MK024806 (Proteus phage Mydo, complete genome) position: , mismatch: 7, identity: 0.781

-----taaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
gctcataa-----taatctacaaggtcgatgaaagag	Protospacer
     ***     *** *****************.**

59. spacer 2.31|818292|32|NC_017465|CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 7, identity: 0.781

-----taaatacttaaactacaaggtcgatgaaaaag	CRISPR spacer
gctcataa-----taatctacaaggtcgatgaaagag	Protospacer
     ***     *** *****************.**

60. spacer 2.37|818659|32|NC_017465|CRISPRCasFinder,CRT matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 7, identity: 0.781

caacaaagcggcaatcaacagcaaggaccagc	CRISPR spacer
ccagaaagcggcaatcgacaggaaggacgacg	Protospacer
* * ************.**** ****** *

61. spacer 3.24|820247|32|NC_017465|CRISPRCasFinder,CRT matches to GU943074 (Uncultured phage MedDCM-OCT-S08-C964 genomic sequence) position: , mismatch: 7, identity: 0.781

-acaaccaactgcaaacggcaacccaacagatc	CRISPR spacer
tggaattga-tgcaaacggcaatccaacagatc	Protospacer
 . **...* ************.**********

62. spacer 5.5|1394715|32|NC_017465|CRISPRCasFinder matches to NZ_KM017071 (Sphingomonas sp. JE1 plasmid pJE1, complete sequence) position: , mismatch: 7, identity: 0.781

aagccaaggcttgacgaacttccaagcaaata	CRISPR spacer
cagccaacgcttgacgaacttgcaaacgagca	Protospacer
 ****** ************* ***.*.*..*

63. spacer 2.2|817681|33|NC_017465|PILER-CR matches to MK448885 (Streptococcus phage Javan252, complete genome) position: , mismatch: 8, identity: 0.758

tttttgcagggttcgctagtgatggcaaaggtg	CRISPR spacer
agctagtagggttcgttaatgatggcaaaggcg	Protospacer
  .* *.********.**.************.*

64. spacer 2.5|817864|33|NC_017465|PILER-CR matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 8, identity: 0.758

catcttgcctacgattgacacctcaaccggtga	CRISPR spacer
catcttccctactattgacacctcaaaattttt	Protospacer
****** ***** *************    *

65. spacer 2.18|818658|33|NC_017465|PILER-CR matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 8, identity: 0.758

ccaacaaagcggcaatcaacagcaaggaccagc	CRISPR spacer
accagaaagcggcaatcgacaggaaggacgacg	Protospacer
 * * ************.**** ****** *

66. spacer 2.20|817621|32|NC_017465|CRISPRCasFinder,CRT matches to MN694574 (Marine virus AFVG_250M706, complete genome) position: , mismatch: 8, identity: 0.75

taaaggagaatactatgatcaacaaaaaaatt	CRISPR spacer
taaaggagaatactatgaataacataggtgta	Protospacer
****************** .**** *.. .*

67. spacer 2.24|817865|32|NC_017465|CRISPRCasFinder,CRT matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 8, identity: 0.75

atcttgcctacgattgacacctcaaccggtga	CRISPR spacer
atcttccctactattgacacctcaaaattttt	Protospacer
***** ***** *************    *

68. spacer 2.28|818109|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acacaataagcgttaatactaaaaataacggt	CRISPR spacer
ttaaaataaccgttaatattaaaaataacccg	Protospacer
 .* ***** ********.**********

69. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349325 (Cyanophage S-RIM12 isolate W1_24_0910, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

70. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to NC_049384 (Enterobacter phage EspM4VN DNA, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cgctgcaagtgtatcgactacaacttcatcga	Protospacer
* * *.   ****** *** ************

71. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349326 (Cyanophage S-RIM12 isolate WH_05_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

72. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349327 (Cyanophage S-RIM12 isolate WH_07_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

73. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349322 (Cyanophage S-RIM12 isolate Sn_31_0910, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

74. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349310 (Cyanophage S-RIM12 isolate RW_01_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

75. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349321 (Cyanophage S-RIM12 isolate Sn_07_0910, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

76. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349324 (Cyanophage S-RIM12 isolate W1_12_0610, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

77. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349308 (Cyanophage S-RIM12 isolate Np_15_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

78. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to LC373201 (Enterobacter phage phiEM4 DNA, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cgctgcaagtgtatcgactacaacttcatcga	Protospacer
* * *.   ****** *** ************

79. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349311 (Cyanophage S-RIM12 isolate RW_04_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

80. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349323 (Cyanophage S-RIM12 isolate W1_08_0910, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

81. spacer 2.29|818170|32|NC_017465|CRISPRCasFinder,CRT matches to KX349313 (Cyanophage S-RIM12 isolate RW_06_0310, complete genome) position: , mismatch: 8, identity: 0.75

cccggtttctgtatctactccaacttcatcga	CRISPR spacer
cactcctggtgtatcaactacaacttcatcga	Protospacer
* *  .*  ****** *** ************

82. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP020899 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence) position: , mismatch: 8, identity: 0.75

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagatgacgatcatcacgacgatgatg	Protospacer
. ** ******************** *  *

83. spacer 3.6|820551|33|NC_017465|PILER-CR matches to NZ_CP050268 (Salinivibrio costicola strain M318 plasmid pM138.1, complete sequence) position: , mismatch: 8, identity: 0.758

-tagctaatgatttctttggtagcgtcagccagg	CRISPR spacer
ataattgg-gatatctttggtagcggcagccagt	Protospacer
 **..*.. *** ************ *******

84. spacer 3.39|821163|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_AP019010 (Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence) position: , mismatch: 8, identity: 0.75

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
aacgttcataccgaagccgttgtcgatgcact	Protospacer
.*************.***.*****..* **

85. spacer 3.39|821163|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP041128 (Serratia marcescens strain WVU-005 plasmid pWVU-005-2, complete sequence) position: , mismatch: 8, identity: 0.75

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
aacgttcataccgaagccgttgtcgatgcact	Protospacer
.*************.***.*****..* **

86. spacer 3.39|821163|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_LT575491 (Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence) position: , mismatch: 8, identity: 0.75

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
aacgttcataccgaagccgttgtcgatgcact	Protospacer
.*************.***.*****..* **

87. spacer 3.39|821163|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP027301 (Serratia marcescens strain SGAir0764 plasmid unnamed_1) position: , mismatch: 8, identity: 0.75

gacgttcataccgaggccattgtcagtccaag	CRISPR spacer
aacgttcataccgaagccgttgtcgatgcact	Protospacer
.*************.***.*****..* **

88. spacer 3.40|821224|32|NC_017465|CRISPRCasFinder,CRT matches to MK614706 (Gammaproteobacteria virus GOV_bin_2604, complete genome) position: , mismatch: 8, identity: 0.75

acatggcatacgcttgaaattgactacgataa	CRISPR spacer
atattgcatactcttgaaattgactttctaaa	Protospacer
*.** ****** ************* .   **

89. spacer 5.3|1394714|33|NC_017465|CRT,PILER-CR matches to NZ_KM017071 (Sphingomonas sp. JE1 plasmid pJE1, complete sequence) position: , mismatch: 8, identity: 0.758

caagccaaggcttgacgaacttccaagcaaata	CRISPR spacer
gcagccaacgcttgacgaacttgcaaacgagca	Protospacer
  ****** ************* ***.*.*..*

90. spacer 2.1|817620|33|NC_017465|PILER-CR matches to MN694574 (Marine virus AFVG_250M706, complete genome) position: , mismatch: 9, identity: 0.727

ttaaaggagaatactatgatcaacaaaaaaatt	CRISPR spacer
ctaaaggagaatactatgaataacataggtgta	Protospacer
.****************** .**** *.. .*

91. spacer 2.9|818108|33|NC_017465|PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tacacaataagcgttaatactaaaaataacggt	CRISPR spacer
cttaaaataaccgttaatattaaaaataacccg	Protospacer
. .* ***** ********.**********

92. spacer 2.12|818291|33|NC_017465|PILER-CR matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 9, identity: 0.727

ttaaatact-----taaactacaaggtcgatgaaaaag	CRISPR spacer
-----cgctcataataatctacaaggtcgatgaaagag	Protospacer
     ..**     *** *****************.**

93. spacer 2.12|818291|33|NC_017465|PILER-CR matches to NC_048682 (Raoultella phage Ro1, complete genome) position: , mismatch: 9, identity: 0.727

ttaaatact-----taaactacaaggtcgatgaaaaag	CRISPR spacer
-----cgctcataataatctacaaggtcgatgaaagag	Protospacer
     ..**     *** *****************.**

94. spacer 2.12|818291|33|NC_017465|PILER-CR matches to MK024806 (Proteus phage Mydo, complete genome) position: , mismatch: 9, identity: 0.727

ttaaatact-----taaactacaaggtcgatgaaaaag	CRISPR spacer
-----cgctcataataatctacaaggtcgatgaaagag	Protospacer
     ..**     *** *****************.**

95. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

96. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

97. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

98. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

99. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

100. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

101. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

102. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

103. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
tcgagaagacgacgatcatcacgacgatgatg	Protospacer
. ** ****.*************** *  *

104. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to KX066068 (Pseudomonas phage VSW-3, complete genome) position: , mismatch: 9, identity: 0.719

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
cactgggcgtgccgatcatcaagaccaacaac	Protospacer
**   .. .** ********* **********

105. spacer 3.32|820736|32|NC_017465|CRISPRCasFinder,CRT matches to NC_007713 (Sodalis glossinidius str. 'morsitans' plasmid pSG1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

106. spacer 3.32|820736|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_LN854558 (Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

107. spacer 3.32|820736|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_LN854558 (Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

108. spacer 3.32|820736|32|NC_017465|CRISPRCasFinder,CRT matches to NC_007182 (Sodalis glossinidius pSG1 plasmid from Glossina austeni) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

109. spacer 3.32|820736|32|NC_017465|CRISPRCasFinder,CRT matches to NC_007183 (Sodalis glossinidius pSG1 plasmid from Glossina palpalis palpalis) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

110. spacer 3.32|820736|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_AP019532 (Serratia symbiotica strain IS plasmid pSsyis1, complete sequence) position: , mismatch: 9, identity: 0.719

tgctgacaaggtatttaaggacgccgagaaac	CRISPR spacer
acccgacaaggtgtttaaggacgcagaatata	Protospacer
  *.********.*********** **. *

111. spacer 3.35|820919|32|NC_017465|CRISPRCasFinder,CRT matches to JQ691611 (Cronobacter phage CR9, complete genome) position: , mismatch: 9, identity: 0.719

cagtgcccacccggtggacgtt----agctctatcc	CRISPR spacer
cagtgcccaccaggcggacgttataaagcgtc----	Protospacer
*********** **.*******    *** ..

112. spacer 3.40|821224|32|NC_017465|CRISPRCasFinder,CRT matches to NC_022739 (Pseudomonas sp. VLB120 plasmid pSTY, complete sequence) position: , mismatch: 9, identity: 0.719

acatggcatacgcttgaaattgactacgataa	CRISPR spacer
gagtgcgttacgcttgaaattgactatggtat	Protospacer
. .**   ******************.*.**

113. spacer 3.40|821224|32|NC_017465|CRISPRCasFinder,CRT matches to MN855617 (Myoviridae sp. isolate 527, complete genome) position: , mismatch: 9, identity: 0.719

acatggcatacgcttgaaattgactacgataa	CRISPR spacer
aatcggcatacgctttaaagtgactactcaag	Protospacer
*  .*********** *** *******   *.

114. spacer 3.44|821468|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP045320 (Roseivivax sp. THAF197b plasmid pTHAF197b_b, complete sequence) position: , mismatch: 9, identity: 0.719

tggaagagctggacgttgtcaaatgacgggaa	CRISPR spacer
ttccacggctggacgttctcgaatgacgggcg	Protospacer
*   * .********** **.********* .

115. spacer 3.44|821468|32|NC_017465|CRISPRCasFinder,CRT matches to NC_022753 (Mycobacterium phage Fredward, complete genome) position: , mismatch: 9, identity: 0.719

tggaagagctggacgttgtcaaatgacgggaa	CRISPR spacer
gagaagatctggacgttgccaaatggtgagcc	Protospacer
 .***** **********.******..*.*

116. spacer 2.33|818414|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

aggtggcaataggccatccccaggggtctccc	CRISPR spacer
aggtggcaatatgccagccccagcccatctac	Protospacer
*********** **** ******    ... *

117. spacer 3.29|820552|32|NC_017465|CRISPRCasFinder,CRT matches to MT366947 (Bacillus phage Hyb2phi3Ts-SPbeta, complete genome) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

118. spacer 3.29|820552|32|NC_017465|CRISPRCasFinder,CRT matches to KY030782 (Bacillus phage phi3T, complete genome) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

119. spacer 3.29|820552|32|NC_017465|CRISPRCasFinder,CRT matches to MT366946 (Bacillus phage Hyb1phi3Ts-SPbeta, complete genome) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

120. spacer 3.29|820552|32|NC_017465|CRISPRCasFinder,CRT matches to CP052843 (Bacillus phage Hybphi3Ts, partial sequence) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

121. spacer 3.29|820552|32|NC_017465|CRISPRCasFinder,CRT matches to MT366945 (Bacillus phage phi3Ts, complete genome) position: , mismatch: 10, identity: 0.688

agctaatgatttctttggtagcgtcagccagg	CRISPR spacer
tcttaatgatttctttggtatggtcatcattt	Protospacer
  .*****************  **** *

122. spacer 3.40|821224|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 10, identity: 0.688

acatggcatacgcttgaaattgactacgataa	CRISPR spacer
cagcttcatacgcttgaaatagacaacgaaag	Protospacer
  ..  ************** *** **** *.

123. spacer 2.20|817621|32|NC_017465|CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 11, identity: 0.656

taaaggagaatactatgatcaacaaaaaaatt	CRISPR spacer
attcattgaatattatgagcaacaaaaaaaac	Protospacer
    .  *****.***** *********** .

124. spacer 2.20|817621|32|NC_017465|CRISPRCasFinder,CRT matches to MN694796 (Marine virus AFVG_250M264, complete genome) position: , mismatch: 11, identity: 0.656

taaaggagaatactatgatcaacaaaaaaatt	CRISPR spacer
ggtgcaagaatactatgatgatcaaaaaatac	Protospacer
 . . .************* * *******  .

125. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_KX009060 (Pseudomonas syringae pv. actinidiae strain RT594 plasmid pUR_RT594, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

126. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_KX009063 (Pseudomonas syringae pv. actinidiae strain RT811 plasmid pPU_RT811, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

127. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_KX009062 (Pseudomonas syringae pv. actinidiae strain B4A plasmid pUR_B4A, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

128. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_KX009061 (Pseudomonas syringae pv. actinidiae strain RT652 plasmid pUR_RT652, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

129. spacer 2.32|818353|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP017011 (Pseudomonas syringae pv. actinidiae strain NZ-47 plasmid pPsa22180b, complete sequence) position: , mismatch: 11, identity: 0.656

cagataagatgacgatcatcacgaccaacaac	CRISPR spacer
acaccaacatgacgatcatcaccaccaaacga	Protospacer
  . .** ************** *****  .

130. spacer 3.25|820308|32|NC_017465|CRISPRCasFinder,CRT matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 11, identity: 0.656

acaaagatgaacttgtgaaaatgtctttcttg	CRISPR spacer
taaaagatgaacttgtaaaaatttccaataaa	Protospacer
  **************.***** **.  .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

537745 : 576223

Lactobacillus_phage(72.41%)

terminase,tail,head,capsid,portal,integrase

attL 530988:531003|attR 561606:561621

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
530988:531003	attL	NA	NA	NA	NA
WP_014562224.1\|537745_538591_-	YitT family protein	M1Q1P6	Streptococcus_phage	3.7e-14	28.3
WP_021350213.1\|539034_539355_+\|head	head protein	Q6SED4	Lactobacillus_prophage	1.2e-26	54.2
WP_021350214.1\|539701_539869_+	hypothetical protein	NA	NA	NA	NA
WP_012390931.1\|539942_541064_-\|integrase	site-specific integrase	E9LUK6	Lactobacillus_phage	1.8e-85	45.6
WP_021815780.1\|541141_541669_-	hypothetical protein	NA	NA	NA	NA
WP_021815781.1\|541675_542134_-	hypothetical protein	A8ATX4	Listeria_phage	8.2e-16	32.0
WP_021815782.1\|542146_542482_-	helix-turn-helix transcriptional regulator	A0A2H4JGZ6	uncultured_Caudovirales_phage	1.3e-10	37.5
WP_021815783.1\|542615_542852_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_021815784.1\|542863_543184_+	hypothetical protein	NA	NA	NA	NA
WP_012390932.1\|543527_543728_+	hypothetical protein	D2KRE0	Lactobacillus_phage	1.8e-20	78.8
WP_012390933.1\|543730_544216_+	siphovirus Gp157 family protein	A0A0A1EL06	Lactobacillus_phage	8.3e-27	44.6
WP_012390934.1\|544240_544921_+	AAA family ATPase	A0A286QRM1	Streptococcus_phage	2.9e-70	56.7
WP_012390935.1\|544913_546260_+	DEAD/DEAH box helicase family protein	Q9T0Y3	Lactobacillus_phage	2.4e-148	58.8
WP_012390936.1\|546279_546840_+	DUF669 domain-containing protein	Q9T0Y2	Lactobacillus_phage	5.4e-46	49.5
WP_012390937.1\|546905_549215_+	primase	A0A0P0IX98	Lactobacillus_phage	2.0e-256	55.9
WP_012390938.1\|549515_549860_+	VRR-NUC domain-containing protein	A0A0A1ENT6	Lactobacillus_phage	2.5e-41	67.9
WP_021815790.1\|550117_550567_+	hypothetical protein	A0A0A1ERD2	Lactobacillus_phage	7.0e-44	61.1
WP_021815791.1\|550572_551031_+	hypothetical protein	A0A0A1EL23	Lactobacillus_phage	4.3e-57	69.1
WP_031265194.1\|551463_552276_+	hypothetical protein	NA	NA	NA	NA
WP_021815792.1\|552364_552871_+	hypothetical protein	B8R694	Lactobacillus_phage	5.1e-43	57.2
WP_012390940.1\|553066_553528_+\|terminase	phage terminase small subunit P27 family	B8R648	Lactobacillus_phage	1.1e-39	52.3
WP_012390941.1\|553524_555429_+\|terminase	terminase large subunit	B8R649	Lactobacillus_phage	6.2e-243	63.2
WP_012390942.1\|555443_555626_+	hypothetical protein	NA	NA	NA	NA
WP_012390943.1\|555625_556846_+\|portal	phage portal protein	B8R650	Lactobacillus_phage	4.3e-96	48.5
WP_031265195.1\|556778_558557_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	2.0e-134	53.0
WP_012390945.1\|558577_558880_+	hypothetical protein	NA	NA	NA	NA
WP_031265196.1\|558851_559220_+\|head	phage head closure protein	B8R652	Lactobacillus_phage	5.7e-20	43.2
WP_080503623.1\|559203_559650_+	hypothetical protein	A0A286QS23	Streptococcus_phage	1.5e-30	49.3
WP_021815795.1\|559649_560021_+	DUF806 family protein	A0A286QR13	Streptococcus_phage	4.0e-13	36.2
WP_012390947.1\|560032_560656_+	hypothetical protein	NA	NA	NA	NA
WP_012390948.1\|560722_561052_+	hypothetical protein	NA	NA	NA	NA
WP_012390949.1\|561256_565456_+	tape measure protein	E9LUR1	Lactobacillus_phage	2.9e-27	41.7
561606:561621	attR	NA	NA	NA	NA
WP_012390950.1\|565518_566358_+\|tail	phage tail family protein	A6M962	Geobacillus_virus	1.0e-19	30.0
WP_014562228.1\|566370_567405_+	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_012390952.1\|567401_568964_+	hypothetical protein	E9LUJ4	Lactobacillus_phage	6.0e-34	25.4
WP_012390953.1\|568950_572445_+	hypothetical protein	E9LUJ5	Lactobacillus_phage	1.1e-59	39.2
WP_021815797.1\|572472_572649_+	hypothetical protein	NA	NA	NA	NA
WP_012390955.1\|572651_572909_+	hypothetical protein	NA	NA	NA	NA
WP_021815798.1\|572922_573399_+	hypothetical protein	NA	NA	NA	NA
WP_021815799.1\|573391_573775_+	hypothetical protein	NA	NA	NA	NA
WP_012390956.1\|573786_574275_+	hypothetical protein	NA	NA	NA	NA
WP_134771495.1\|574357_574678_+	hypothetical protein	D2KRC5	Lactobacillus_phage	7.9e-26	52.8
WP_021815801.1\|574674_575109_+	hypothetical protein	A0A0A1ELI5	Lactobacillus_phage	4.3e-14	40.9
WP_012390957.1\|575059_576223_+	LysM peptidoglycan-binding domain-containing protein	A0A075KJD2	Lactobacillus_phage	1.6e-39	39.1

DBSCAN-SWA_2

751349 : 840748

Lactobacillus_phage(40.74%)

protease,transposase,integrase

attL 753085:753099|attR 818885:818974

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041812679.1\|751349_751805_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-32	50.0
WP_012391038.1\|751878_753129_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	1.4e-57	37.3
753085:753099	attL	NA	NA	NA	NA
WP_012391039.1\|753562_754267_+	hypothetical protein	NA	NA	NA	NA
753085:753099	attL	NA	NA	NA	NA
WP_012391040.1\|754387_754552_+	hypothetical protein	NA	NA	NA	NA
WP_004563375.1\|754588_754819_+	hypothetical protein	NA	NA	NA	NA
WP_041812681.1\|758628_759075_-	nucleoside 2-deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	5.3e-20	36.1
WP_015638775.1\|759193_759814_+	hypothetical protein	NA	NA	NA	NA
WP_014562285.1\|760058_761144_-\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	2.4e-106	53.8
WP_021815901.1\|761268_761844_-	hypothetical protein	NA	NA	NA	NA
WP_012391044.1\|761940_762675_-	potassium channel family protein	A0A1B0Y2S3	Lactobacillus_phage	5.9e-32	49.3
WP_021815902.1\|762709_763246_-	hypothetical protein	NA	NA	NA	NA
WP_012391045.1\|763262_763577_-	hypothetical protein	NA	NA	NA	NA
WP_041813053.1\|763655_764063_-	ImmA/IrrE family metallo-endopeptidase	E9LUL3	Lactobacillus_phage	2.9e-65	91.7
WP_041812683.1\|764067_764382_-	helix-turn-helix transcriptional regulator	A0A1B0Y2R0	Lactobacillus_phage	1.8e-22	54.8
WP_021815904.1\|764562_764793_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
764626:764640	attR	NA	NA	NA	NA
WP_014562286.1\|764789_765575_+	hypothetical protein	E9LUL6	Lactobacillus_phage	8.0e-96	66.5
764626:764640	attR	NA	NA	NA	NA
WP_158305944.1\|765587_765746_+	hypothetical protein	NA	NA	NA	NA
WP_021815906.1\|765748_766060_-	hypothetical protein	NA	NA	NA	NA
WP_012391049.1\|766126_766309_+	hypothetical protein	NA	NA	NA	NA
WP_012391050.1\|766305_766533_-	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_012391051.1\|766591_766846_+	hypothetical protein	NA	NA	NA	NA
WP_014562287.1\|768387_769236_+	hypothetical protein	E9LUM4	Lactobacillus_phage	2.4e-146	84.8
WP_035435754.1\|769235_769757_+	single-stranded DNA-binding protein	A0A286QMN2	Streptococcus_phage	1.3e-30	50.7
WP_049775679.1\|769770_770463_+	helix-turn-helix domain-containing protein	A0A1W6JQ30	Staphylococcus_phage	6.8e-14	44.9
WP_035435751.1\|770533_770986_+	hypothetical protein	NA	NA	NA	NA
WP_035435748.1\|771100_771565_+	hypothetical protein	A0A0A1EL23	Lactobacillus_phage	7.2e-44	59.7
WP_014562288.1\|771799_772987_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_021815914.1\|775553_776036_+	replication initiation protein	NA	NA	NA	NA
WP_031265237.1\|776855_778088_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_158305947.1\|780976_781750_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_041812688.1\|783893_784478_+	recombinase family protein	A0A219YA40	Aeromonas_phage	1.5e-17	35.0
WP_021815920.1\|785864_786374_+	membrane protein	NA	NA	NA	NA
WP_080487858.1\|786729_787517_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014562294.1\|787939_789160_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	8.1e-95	46.2
WP_031265246.1\|790052_791207_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	2.4e-27	29.8
WP_014562296.1\|791388_792576_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_012391064.1\|792720_793584_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-18	28.8
WP_158305945.1\|795124_795388_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6J1X2	Lactobacillus_phage	3.0e-31	75.3
WP_080558627.1\|795332_795524_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6J1X2	Lactobacillus_phage	2.7e-21	97.9
WP_080558602.1\|795456_795663_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.6e-27	98.4
WP_003586778.1\|795833_796232_+	DUF1722 domain-containing protein	NA	NA	NA	NA
WP_014562298.1\|796634_797921_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.7e-47	31.0
WP_012391071.1\|799068_800511_-	hypothetical protein	NA	NA	NA	NA
WP_041812692.1\|800645_801524_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.2e-43	36.8
WP_041812696.1\|802573_803812_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	8.2e-95	46.4
WP_041812698.1\|803922_804210_+\|transposase	transposase	NA	NA	NA	NA
WP_012391074.1\|805672_808396_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_012391056.1\|808599_809787_+\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_012391076.1\|811464_812058_+	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA
WP_012391077.1\|812084_813167_+	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA
WP_012391078.1\|813147_813855_+	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA
WP_031265251.1\|813872_814514_+	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
WP_012391080.1\|814527_815469_+	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_041812700.1\|823491_823854_+	hypothetical protein	NA	NA	NA	NA
WP_012391635.1\|824055_824748_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_134771497.1\|824672_825623_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.5e-16	30.2
WP_008211256.1\|825742_826063_-	hypothetical protein	NA	NA	NA	NA
WP_012391085.1\|826191_827415_+	DUF389 domain-containing protein	NA	NA	NA	NA
WP_008211252.1\|827436_828771_-	APC family permease	NA	NA	NA	NA
WP_162465530.1\|828863_829550_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.5e-61	52.2
WP_003685235.1\|831310_831937_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	6.6e-16	52.9
WP_012391088.1\|832092_832344_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003685231.1\|832420_832648_+	YneF family protein	NA	NA	NA	NA
WP_003681959.1\|834191_834482_+	GIY-YIG nuclease family protein	W8W2G4	Invertebrate_iridovirus	1.4e-05	38.0
WP_003681957.1\|834635_835415_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_003681955.1\|835505_836384_+	elongation factor Ts	NA	NA	NA	NA
WP_003681954.1\|836464_837190_+	UMP kinase	NA	NA	NA	NA
WP_080503628.1\|837186_837750_+	ribosome recycling factor	NA	NA	NA	NA
WP_134771498.1\|837876_838650_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	5.6e-17	34.6
WP_003681950.1\|838666_839455_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_014562307.1\|839476_840748_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_3

914390 : 996544

Lactobacillus_phage(26.67%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_112297119.1\|914390_915341_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.5e-16	30.2
WP_012391133.1\|916809_918780_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_012391134.1\|918794_920855_-	beta-galactosidase	NA	NA	NA	NA
WP_012391135.1\|921135_922137_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_002822190.1\|922298_922781_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_158305946.1\|925299_925470_+	hypothetical protein	NA	NA	NA	NA
WP_012391137.1\|927056_928229_+	cysteine desulfurase	NA	NA	NA	NA
WP_012390701.1\|928518_928971_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.8e-32	51.5
WP_080558606.1\|930527_931547_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_041812724.1\|932288_932969_-	DUF554 domain-containing protein	NA	NA	NA	NA
WP_041812726.1\|933143_933683_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_012391143.1\|933983_934127_+	hypothetical protein	NA	NA	NA	NA
WP_014562336.1\|934216_935065_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_134771514.1\|936423_936699_-	hypothetical protein	NA	NA	NA	NA
WP_012391146.1\|936793_937045_-	hypothetical protein	NA	NA	NA	NA
WP_012391147.1\|937171_938263_-	NAD(P)-dependent alcohol dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	1.1e-23	25.8
WP_080558607.1\|944677_945007_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014562340.1\|945553_946366_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_041812728.1\|946427_947069_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_014562341.1\|948033_948819_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_012391152.1\|949264_951232_+	membrane protein	NA	NA	NA	NA
WP_012391153.1\|951486_952053_+	hypothetical protein	NA	NA	NA	NA
WP_012391154.1\|952241_953195_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_003685054.1\|953754_954081_+	hypothetical protein	NA	NA	NA	NA
WP_014562343.1\|955100_955835_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_003681789.1\|955910_956252_+	hypothetical protein	NA	NA	NA	NA
WP_012391156.1\|956267_958502_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A218M393	Acidovorax_phage	6.8e-07	43.5
WP_003681786.1\|958511_958949_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_003681784.1\|959255_959744_+	transcriptional regulator	NA	NA	NA	NA
WP_014562345.1\|961264_962392_+	PLP-dependent transferase	A0A2I2L687	Orpheovirus	4.5e-07	28.3
WP_012391159.1\|963747_964491_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-32	39.0
WP_003681771.1\|964502_965174_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012391160.1\|965184_965889_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012391162.1\|967068_967728_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_041812731.1\|967708_968380_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012391164.1\|968390_969131_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-37	36.1
WP_014562348.1\|969146_970001_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_014562349.1\|970431_971175_+	glucose 1-dehydrogenase	A0A0M4JSW6	Mollivirus	2.9e-18	30.2
WP_049775700.1\|973688_975062_-	amino acid permease	NA	NA	NA	NA
WP_003681749.1\|975188_976121_+	homocysteine S-methyltransferase	NA	NA	NA	NA
WP_012391168.1\|976220_977063_-	phosphotransferase	NA	NA	NA	NA
WP_014562353.1\|977996_979025_-	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	7.7e-14	29.1
WP_003681741.1\|979402_980698_+\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	7.7e-27	26.3
WP_021349548.1\|983153_983837_+	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_003684990.1\|983950_984139_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_003684989.1\|984203_984653_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	7.2e-17	34.7
WP_014562357.1\|984800_985784_+	PhoH family protein	L7TP00	Rhizobium_phage	9.2e-49	49.3
WP_041812733.1\|985783_986257_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_003681724.1\|986234_986633_+	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_014562358.1\|986646_987552_+	GTPase Era	NA	NA	NA	NA
WP_014562359.1\|987664_988432_+	DNA repair protein RecO	NA	NA	NA	NA
WP_134771515.1\|995428_995734_-\|transposase	transposase	Q6J1X2	Lactobacillus_phage	1.0e-46	93.8
WP_080558609.1\|995669_996239_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.1e-94	98.9
WP_041812739.1\|996292_996544_-\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	1.3e-36	94.0

DBSCAN-SWA_4

1036651 : 1044919

Staphylococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014562378.1\|1036651_1037854_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	3.4e-45	48.6
WP_003683168.1\|1039817_1040777_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	9.1e-118	63.4
WP_041812751.1\|1040788_1041292_+	dihydrofolate reductase	A0A1Y0SUI9	Pseudomonas_phage	1.1e-21	36.6
WP_003684928.1\|1041271_1041901_-	hemolysin III family protein	NA	NA	NA	NA
WP_014562380.1\|1042067_1042910_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	3.0e-16	33.3
WP_003683161.1\|1043044_1044223_-	3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	8.7e-62	36.8
WP_003683159.1\|1044292_1044919_+	chloramphenicol acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.0e-13	40.8

DBSCAN-SWA_5

1334640 : 1455114

Bacillus_phage(29.17%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014562500.1\|1334640_1335780_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	2.2e-41	32.8
WP_134771501.1\|1335862_1336228_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014562501.1\|1336434_1337346_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003617037.1\|1337463_1338099_+	carbonic anhydrase family protein	NA	NA	NA	NA
WP_003683312.1\|1342830_1343268_-	signal peptidase II	NA	NA	NA	NA
WP_003683310.1\|1343267_1343702_-	hypothetical protein	NA	NA	NA	NA
WP_041812837.1\|1343714_1344116_+	ribonuclease HI family protein	NA	NA	NA	NA
WP_041812839.1\|1344271_1344874_-	nitroreductase family protein	NA	NA	NA	NA
WP_014562503.1\|1345097_1345961_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_041812841.1\|1346174_1346864_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_023466057.1\|1346950_1347517_-	hypothetical protein	NA	NA	NA	NA
WP_080558628.1\|1347532_1347649_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_003688751.1\|1347770_1348058_+\|transposase	transposase	NA	NA	NA	NA
WP_012391429.1\|1348129_1349350_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.1e-95	46.5
WP_014562504.1\|1349421_1350300_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	9.8e-42	36.1
WP_080558611.1\|1351017_1351176_-	hypothetical protein	NA	NA	NA	NA
WP_080558612.1\|1351963_1352662_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	7.6e-21	30.4
WP_134771502.1\|1352598_1353507_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.9e-14	26.9
WP_049775692.1\|1353638_1355117_+	amidase	NA	NA	NA	NA
WP_003683293.1\|1357511_1357961_-	NUDIX hydrolase	NA	NA	NA	NA
WP_003683290.1\|1361727_1362096_-	cell division regulator GpsB	NA	NA	NA	NA
WP_041812844.1\|1362194_1362791_-	DUF1273 domain-containing protein	NA	NA	NA	NA
WP_041812845.1\|1362882_1363518_+	Holliday junction resolvase RecU	A0A1B1P798	Bacillus_phage	1.5e-23	36.2
WP_014562509.1\|1363510_1365784_+	penicillin-binding protein 1A	NA	NA	NA	NA
WP_004563221.1\|1365890_1366802_-	EamA family transporter	NA	NA	NA	NA
WP_014562510.1\|1366925_1367945_+	glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_003683269.1\|1369364_1370093_-	DnaD domain protein	A0A0N7AE27	Bacillus_phage	3.5e-13	37.1
WP_014562511.1\|1370184_1371480_-\|tRNA	asparagine--tRNA ligase	A0A2K9KZD3	Tupanvirus	5.8e-51	29.4
WP_004563226.1\|1371506_1372025_-	DUF5590 domain-containg protein	NA	NA	NA	NA
WP_014562515.1\|1379507_1380641_-\|transposase	IS30 family transposase	A0A2H4UUX5	Bodo_saltans_virus	2.2e-06	44.1
WP_014562516.1\|1380850_1382038_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_003683913.1\|1384137_1384944_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_014562519.1\|1385175_1386093_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_012391420.1\|1391665_1392631_-	aspartate carbamoyltransferase catalytic subunit	M1HGA5	Paramecium_bursaria_Chlorella_virus	4.2e-22	29.6
WP_041807812.1\|1393315_1393603_+\|transposase	transposase	NA	NA	NA	NA
WP_012391422.1\|1393626_1394505_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.7e-42	36.4
WP_012391423.1\|1394940_1395231_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_012391424.1\|1395240_1396272_-	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_012391425.1\|1396268_1396925_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_012391426.1\|1396928_1397807_-	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_012391427.1\|1397828_1399730_-	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_041813072.1\|1399726_1400476_-	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_012391429.1\|1400535_1401756_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.1e-95	46.5
WP_014562522.1\|1401786_1404261_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_014562523.1\|1404494_1405373_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.4e-42	36.4
WP_003688751.1\|1405396_1405684_-\|transposase	transposase	NA	NA	NA	NA
WP_031265403.1\|1405847_1406423_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	4.9e-18	33.2
WP_012391432.1\|1407268_1408555_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	7.8e-48	31.4
WP_003683897.1\|1408648_1409008_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_014562524.1\|1409128_1410556_-	amino acid permease	NA	NA	NA	NA
WP_004563245.1\|1411326_1411836_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003683889.1\|1411960_1412221_-	KH domain-containing protein	NA	NA	NA	NA
WP_003683887.1\|1412235_1412511_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_003683886.1\|1412640_1413345_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_041812848.1\|1413359_1414115_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-15	28.6
WP_041812850.1\|1414127_1414985_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_003683880.1\|1415009_1415909_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_004563249.1\|1415908_1416784_-	phosphate ABC transporter substrate-binding protein	H6WG65	Cyanophage	3.4e-10	31.2
WP_041812852.1\|1417075_1417780_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.6e-16	28.6
WP_012391439.1\|1418895_1419081_-	hypothetical protein	NA	NA	NA	NA
WP_003683867.1\|1420911_1421253_-	putative DNA-binding protein	NA	NA	NA	NA
WP_003683860.1\|1426397_1427096_-	ribonuclease III	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	1.5e-21	33.2
WP_003683858.1\|1427242_1427488_-	acyl carrier protein	NA	NA	NA	NA
WP_014562530.1\|1430686_1432381_-	DAK2 domain-containing protein	NA	NA	NA	NA
WP_003683850.1\|1432408_1432771_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_012391446.1\|1432917_1433106_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_080558615.1\|1433226_1433886_-	thiamine diphosphokinase	NA	NA	NA	NA
WP_003686276.1\|1433953_1434607_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_014562531.1\|1434618_1435509_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_014562532.1\|1435528_1437451_-	Stk1 family PASTA domain-containing Ser/Thr kinase	G9BWE0	Planktothrix_phage	9.4e-21	29.6
WP_003683838.1\|1437454_1438192_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA
WP_014562533.1\|1438210_1439557_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_003683834.1\|1439549_1440500_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.5e-11	32.7
WP_003683829.1\|1444216_1444501_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_003683827.1\|1444497_1445118_-	guanylate kinase	A0A212Q4J6	Cowpox_virus	2.2e-19	29.0
WP_014562535.1\|1445310_1445628_+	hypothetical protein	NA	NA	NA	NA
WP_003686264.1\|1445720_1447415_-	DNA repair protein RecN	NA	NA	NA	NA
WP_003683822.1\|1447432_1447882_-	ArgR family transcriptional regulator	NA	NA	NA	NA
WP_014562536.1\|1448662_1449598_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_003683813.1\|1449597_1449891_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_014562538.1\|1451338_1452196_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.9e-37	38.9
WP_041812854.1\|1452373_1452793_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_041812855.1\|1452792_1453233_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_041812857.1\|1453323_1454400_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	9.3e-10	31.7
WP_003683800.1\|1454485_1454767_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_003683798.1\|1454790_1455114_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA

DBSCAN-SWA_6

1601996 : 1645207

Bacillus_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041812900.1\|1601996_1602284_+\|transposase	transposase	NA	NA	NA	NA
WP_080503640.1\|1603170_1603533_-	hypothetical protein	NA	NA	NA	NA
WP_012391540.1\|1603631_1604723_-	acyltransferase	NA	NA	NA	NA
WP_012391541.1\|1604745_1605750_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_014562586.1\|1605758_1607138_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_012391544.1\|1608455_1609517_+	glycosyltransferase	NA	NA	NA	NA
WP_014562587.1\|1610721_1611738_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.3e-33	31.1
WP_014562588.1\|1612162_1613050_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.1e-46	41.3
WP_012391547.1\|1614815_1615694_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.6e-42	36.4
WP_003688751.1\|1615717_1616005_-\|transposase	transposase	NA	NA	NA	NA
WP_041807838.1\|1616404_1617046_-	hypothetical protein	NA	NA	NA	NA
WP_014562590.1\|1618123_1619188_-	hypothetical protein	NA	NA	NA	NA
WP_012391550.1\|1619314_1620076_-	DUF4422 domain-containing protein	NA	NA	NA	NA
WP_003684130.1\|1620087_1620741_-	sugar transferase	NA	NA	NA	NA
WP_003684129.1\|1620910_1621729_-	recombination regulator RecX	NA	NA	NA	NA
WP_003684128.1\|1621822_1622029_+	hypothetical protein	NA	NA	NA	NA
WP_003684127.1\|1622064_1622280_+	DUF2922 domain-containing protein	NA	NA	NA	NA
WP_014562591.1\|1622460_1623357_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_014562592.1\|1623485_1626371_-	LTA synthase family protein	NA	NA	NA	NA
WP_014562593.1\|1626580_1627438_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_012391556.1\|1627550_1627997_+	flavodoxin	NA	NA	NA	NA
WP_041812906.1\|1628006_1628441_+	GtrA family protein	NA	NA	NA	NA
WP_004563029.1\|1629095_1630424_-	DEAD/DEAH box helicase	A0A1B1IS59	uncultured_Mediterranean_phage	1.0e-34	26.9
WP_003684113.1\|1631603_1631969_+	DUF4828 domain-containing protein	NA	NA	NA	NA
WP_014562595.1\|1632681_1633584_-	L-2-hydroxyisocaproate dehydrogenase	NA	NA	NA	NA
WP_041812908.1\|1633751_1635257_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_014562597.1\|1635371_1636151_-	flavoprotein	NA	NA	NA	NA
WP_041812910.1\|1636293_1636647_+	iron-sulfur cluster biosynthesis protein	NA	NA	NA	NA
WP_004563022.1\|1637194_1638820_-	ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	3.9e-52	26.9
WP_004563019.1\|1638990_1639458_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_003684101.1\|1639538_1640099_-	hypothetical protein	NA	NA	NA	NA
WP_003684096.1\|1640571_1641831_-	transcriptional regulator	NA	NA	NA	NA
WP_003684094.1\|1642053_1642602_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_134771504.1\|1642626_1643469_+	MFS transporter	NA	NA	NA	NA
WP_021349818.1\|1643496_1643973_+	MFS transporter	NA	NA	NA	NA
WP_012391562.1\|1644004_1644523_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	3.5e-31	46.2
WP_041812912.1\|1644613_1645207_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_7

1654947 : 1679760

Bacillus_phage(40.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_134771505.1\|1654947_1655865_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.8e-14	29.3
WP_012391429.1\|1656556_1657777_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.1e-95	46.5
WP_003684065.1\|1660270_1661641_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014562197.1\|1661708_1662929_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-94	46.0
WP_003688751.1\|1663724_1664012_+\|transposase	transposase	NA	NA	NA	NA
WP_012391547.1\|1664035_1664914_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.6e-42	36.4
WP_003681672.1\|1665668_1666319_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_041812919.1\|1666343_1666625_-	hypothetical protein	NA	NA	NA	NA
WP_003681668.1\|1666676_1666904_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_021816442.1\|1671054_1671558_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014562606.1\|1672698_1673874_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_014562607.1\|1673994_1675404_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.7e-128	51.7
WP_014562608.1\|1675512_1676526_-	diacylglycerol kinase	NA	NA	NA	NA
WP_003681638.1\|1676538_1677963_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_014562609.1\|1677976_1679440_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_004562976.1\|1679439_1679760_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA

DBSCAN-SWA_8

1723956 : 1781969

Enterobacteria_phage(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004562953.1\|1723956_1726461_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	1.1e-125	39.8
WP_003681550.1\|1726479_1726950_-	CtsR family transcriptional regulator	NA	NA	NA	NA
WP_004562952.1\|1727088_1728108_-	alcohol dehydrogenase AdhP	E3SJ82	Synechococcus_phage	5.7e-17	26.8
WP_004562950.1\|1729587_1730304_+	hypothetical protein	NA	NA	NA	NA
WP_080503642.1\|1731064_1731505_-	hypothetical protein	A0A1V0SJ47	Klosneuvirus	4.6e-08	36.6
WP_021816468.1\|1731434_1731794_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_004562945.1\|1733142_1733973_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_134771507.1\|1734031_1734304_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_041812929.1\|1734287_1734623_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_015639408.1\|1734635_1734806_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_003681522.1\|1735545_1736187_-	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	5.4e-58	52.5
WP_003681521.1\|1736317_1737808_-	amino acid permease	NA	NA	NA	NA
WP_003681519.1\|1738117_1738585_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012391608.1\|1738629_1739439_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_041812931.1\|1739657_1740326_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_003681512.1\|1740380_1740869_-	threonine/serine exporter	NA	NA	NA	NA
WP_003681510.1\|1740878_1741628_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_003681509.1\|1741799_1742000_-	cold-shock protein	Q9AZD3	Lactococcus_phage	1.2e-19	65.2
WP_035430714.1\|1742148_1742808_-	metal-dependent transcriptional regulator	NA	NA	NA	NA
WP_014562621.1\|1742961_1743867_+	cation transporter	NA	NA	NA	NA
WP_041812933.1\|1744021_1744717_-	VIT family protein	NA	NA	NA	NA
WP_041812935.1\|1744734_1745418_-	VIT family protein	NA	NA	NA	NA
WP_041812937.1\|1745584_1746043_-	universal stress protein	NA	NA	NA	NA
WP_014562622.1\|1746718_1747933_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_004562921.1\|1748103_1749936_-	ribonuclease J	NA	NA	NA	NA
WP_021349707.1\|1750207_1750549_-	hypothetical protein	NA	NA	NA	NA
WP_003681483.1\|1750643_1751171_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_014562623.1\|1751228_1752716_+	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_012391618.1\|1752719_1753424_+	DUF4811 domain-containing protein	NA	NA	NA	NA
WP_012391619.1\|1753514_1754939_-	L-arabinose isomerase	NA	NA	NA	NA
WP_012391620.1\|1755070_1756438_-	sugar porter family MFS transporter	NA	NA	NA	NA
WP_012391621.1\|1756654_1757740_-	GntR family transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.4e-10	23.8
WP_012391622.1\|1757898_1758627_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_012391623.1\|1758637_1760242_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_041812939.1\|1760472_1761357_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.4e-11	32.3
WP_041812940.1\|1764495_1765080_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_014562626.1\|1765095_1766094_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_080558629.1\|1766329_1766992_-	uracil-DNA glycosylase	A0A218MKQ4	uncultured_virus	1.1e-05	28.7
WP_014562627.1\|1767009_1768347_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_014562628.1\|1768423_1769317_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012391629.1\|1772388_1773357_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_035431426.1\|1774786_1775401_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	2.8e-27	38.0
WP_041812948.1\|1776408_1777287_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	8.8e-43	36.8
WP_003688751.1\|1777311_1777599_-\|transposase	transposase	NA	NA	NA	NA
WP_012390709.1\|1778739_1779756_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	2.4e-36	34.4
WP_004562901.1\|1780144_1780858_-	EcsC family protein	NA	NA	NA	NA
WP_041812950.1\|1781282_1781969_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	6.0e-63	52.2

DBSCAN-SWA_9

1958440 : 2033025

Bacillus_phage(23.08%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014562698.1\|1958440_1959328_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.5e-45	41.0
WP_003681165.1\|1959391_1960072_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_049775697.1\|1961489_1962149_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	4.3e-18	29.2
WP_014562699.1\|1962158_1963445_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	8.7e-47	31.2
WP_014562700.1\|1963476_1964514_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.9e-13	26.9
WP_014562701.1\|1964813_1965824_-	nickel transporter NixA	NA	NA	NA	NA
WP_014562702.1\|1965852_1966680_-	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA
WP_041813003.1\|1966704_1967415_-	aquaporin family protein	NA	NA	NA	NA
WP_014562703.1\|1967416_1968781_-	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA
WP_012391745.1\|1968780_1969539_-	nickel pincer cofactor biosynthesis protein LarB	A0A288TYA6	Enterococcus_phage	3.7e-21	47.2
WP_012391746.1\|1969546_1970830_-	nickel-dependent lactate racemase	NA	NA	NA	NA
WP_023466300.1\|1971070_1971742_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_041807908.1\|1972260_1972461_-	hypothetical protein	NA	NA	NA	NA
WP_014562705.1\|1972473_1973661_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_014562706.1\|1973929_1975651_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_003681137.1\|1975838_1977167_-	L-fucose:H+ symporter permease	NA	NA	NA	NA
WP_003681135.1\|1977181_1977577_-	D-ribose pyranase	NA	NA	NA	NA
WP_003681133.1\|1977600_1978518_-	ribokinase	NA	NA	NA	NA
WP_014562707.1\|1978761_1979721_-	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_041813006.1\|1979824_1980478_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_014562708.1\|1980491_1981517_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003685479.1\|1981542_1982490_+	ribokinase	NA	NA	NA	NA
WP_014562709.1\|1982549_1983974_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_014562710.1\|1984171_1985176_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_003681120.1\|1987812_1988247_-	hypothetical protein	NA	NA	NA	NA
WP_014562712.1\|1988526_1990926_-	phosphoketolase family protein	NA	NA	NA	NA
WP_014562713.1\|1991131_1991929_-	HAD family hydrolase	NA	NA	NA	NA
WP_003685491.1\|1991935_1992664_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014562714.1\|1992807_1993308_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_041813009.1\|1993311_1994055_+	hypothetical protein	NA	NA	NA	NA
WP_014562715.1\|1994114_1995551_+	C69 family dipeptidase	NA	NA	NA	NA
WP_014562716.1\|1996031_1996844_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_014562717.1\|1997105_1997621_-	DUF1836 domain-containing protein	NA	NA	NA	NA
WP_041813011.1\|1997630_1998158_-	hypothetical protein	NA	NA	NA	NA
WP_003681106.1\|1998306_1999692_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_041813013.1\|1999778_2000243_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A217ER62	Bacillus_phage	1.8e-07	28.8
WP_035430687.1\|2000487_2000919_-	VOC family protein	NA	NA	NA	NA
WP_014562718.1\|2001111_2002281_+	MFS transporter	NA	NA	NA	NA
WP_003685507.1\|2002720_2004202_+	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	4.0e-72	36.9
WP_012391767.1\|2004386_2005826_+	NADP-dependent phosphogluconate dehydrogenase	M4SJX8	Cyanophage	1.4e-29	29.4
WP_021350129.1\|2006080_2006554_-	universal stress protein	NA	NA	NA	NA
WP_021350128.1\|2006715_2007171_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_014562719.1\|2007329_2008097_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	8.0e-16	29.6
WP_014562720.1\|2009387_2011196_-	oligoendopeptidase F	NA	NA	NA	NA
WP_014562721.1\|2011198_2012491_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_041813016.1\|2012738_2013410_+	membrane protein	NA	NA	NA	NA
WP_004562986.1\|2018697_2019357_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	8.1e-41	43.3
WP_004562984.1\|2020244_2020601_-	hypothetical protein	NA	NA	NA	NA
WP_080503649.1\|2020602_2021319_-	sel1 repeat family protein	NA	NA	NA	NA
WP_012391775.1\|2022397_2023234_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_021816632.1\|2023280_2023889_-	Tat pathway signal sequence	NA	NA	NA	NA
WP_012391776.1\|2023904_2026127_-	alpha-galactosidase	NA	NA	NA	NA
WP_134771510.1\|2027577_2028408_-	hypothetical protein	Q6NE04	Leptospira_phage	2.8e-46	39.1
WP_012391429.1\|2028563_2029784_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.1e-95	46.5
WP_021816635.1\|2031345_2031627_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_041807917.1\|2031623_2031980_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_014562726.1\|2032101_2033025_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.5e-32	31.9

Anti-CRISPR protein detection

Acr_ID: NC_017465.1|WP_003683858.1|1427242_1427488_-|acyl-carrier-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_017465.1|WP_003683858.1|1427242_1427488_-|acyl-carrier-protein

1427242_1427488_-

81 aa aa

1334640-1455114

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location
NC_017465_4	Orphan	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	1347690-1347720
NC_017465_4	Orphan	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	1393235-1393265
NC_017465_4	Orphan	4.1\|880992\|31\|NC_017465\|CRISPRCasFinder	880992-881022	31	1405765-1405735

1. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NC_017465 position: 1347690-1347720, mismatch: 0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

2. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NC_017465 position: 1393235-1393265, mismatch: 0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

3. spacer 4.1|880992|31|NC_017465|CRISPRCasFinder matches to NC_017465 position: 1405765-1405735, mismatch: 0

tgggcctagaataaaaagtgtacaagttaaa	CRISPR spacer
tgggcctagaataaaaagtgtacaagttaaa	Protospacer
*******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017465

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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