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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017593 Streptococcus pneumoniae INV200, complete genome 2 crisprs DEDDh,cas3,DinG 2 4 10 0

Results visualization

1. NC_017593
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017593_1 96410-96505 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017593_2 1621870-1623729 Orphan NA
31 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017593_2 2.29|1623598|18|NC_017593|CRT 1623598-1623615 18 NC_017593.1 1624639-1624656 2 0.889
NC_017593_2 2.30|1623634|18|NC_017593|CRT 1623634-1623651 18 NC_017593.1 1624639-1624656 2 0.889

1. spacer 2.29|1623598|18|NC_017593|CRT matches to position: 1624639-1624656, mismatch: 2, identity: 0.889

acttgctgaggtcgacgc	CRISPR spacer
actcgctgaggtcgaagc	Protospacer
***.*********** **

2. spacer 2.30|1623634|18|NC_017593|CRT matches to position: 1624639-1624656, mismatch: 2, identity: 0.889

acttgctgaggtcgacgc	CRISPR spacer
actcgctgaggtcgaagc	Protospacer
***.*********** **

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017593_2 2.11|1622602|30|NC_017593|CRT 1622602-1622631 30 MH518298 Pseudomonas phage SCYZ1, complete genome 28326-28355 6 0.8
NC_017593_2 2.14|1622746|30|NC_017593|CRT 1622746-1622775 30 MH518298 Pseudomonas phage SCYZ1, complete genome 28326-28355 6 0.8
NC_017593_2 2.15|1622794|30|NC_017593|CRT 1622794-1622823 30 MH518298 Pseudomonas phage SCYZ1, complete genome 28326-28355 6 0.8
NC_017593_2 2.18|1622938|30|NC_017593|CRT 1622938-1622967 30 MH518298 Pseudomonas phage SCYZ1, complete genome 28326-28355 6 0.8
NC_017593_2 2.11|1622602|30|NC_017593|CRT 1622602-1622631 30 NZ_LN831184 Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence 137678-137707 7 0.767
NC_017593_2 2.14|1622746|30|NC_017593|CRT 1622746-1622775 30 NZ_LN831184 Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence 137678-137707 7 0.767
NC_017593_2 2.15|1622794|30|NC_017593|CRT 1622794-1622823 30 NZ_LN831184 Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence 137678-137707 7 0.767
NC_017593_2 2.18|1622938|30|NC_017593|CRT 1622938-1622967 30 NZ_LN831184 Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence 137678-137707 7 0.767
NC_017593_2 2.11|1622602|30|NC_017593|CRT 1622602-1622631 30 NZ_CP024892 Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence 124165-124194 8 0.733
NC_017593_2 2.14|1622746|30|NC_017593|CRT 1622746-1622775 30 NZ_CP024892 Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence 124165-124194 8 0.733
NC_017593_2 2.15|1622794|30|NC_017593|CRT 1622794-1622823 30 NZ_CP024892 Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence 124165-124194 8 0.733
NC_017593_2 2.18|1622938|30|NC_017593|CRT 1622938-1622967 30 NZ_CP024892 Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence 124165-124194 8 0.733

1. spacer 2.11|1622602|30|NC_017593|CRT matches to MH518298 (Pseudomonas phage SCYZ1, complete genome) position: , mismatch: 6, identity: 0.8

gcttgctgacgtgcttgctgagg---tcgacgc	CRISPR spacer
gcttgctgaggggcttgctgaggagcttga---	Protospacer
********* * ***********   *.**   

2. spacer 2.14|1622746|30|NC_017593|CRT matches to MH518298 (Pseudomonas phage SCYZ1, complete genome) position: , mismatch: 6, identity: 0.8

gcttgctgacgtgcttgctgagg---tcgacgc	CRISPR spacer
gcttgctgaggggcttgctgaggagcttga---	Protospacer
********* * ***********   *.**   

3. spacer 2.15|1622794|30|NC_017593|CRT matches to MH518298 (Pseudomonas phage SCYZ1, complete genome) position: , mismatch: 6, identity: 0.8

gcttgctgacgtgcttgctgagg---tcgacgc	CRISPR spacer
gcttgctgaggggcttgctgaggagcttga---	Protospacer
********* * ***********   *.**   

4. spacer 2.18|1622938|30|NC_017593|CRT matches to MH518298 (Pseudomonas phage SCYZ1, complete genome) position: , mismatch: 6, identity: 0.8

gcttgctgacgtgcttgctgagg---tcgacgc	CRISPR spacer
gcttgctgaggggcttgctgaggagcttga---	Protospacer
********* * ***********   *.**   

5. spacer 2.11|1622602|30|NC_017593|CRT matches to NZ_LN831184 (Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence) position: , mismatch: 7, identity: 0.767

gcttgctgacgtgcttgctgaggtcgacgc	CRISPR spacer
gcttgttgaggtgcttgctgaggttgggat	Protospacer
*****.*** **************.*. ..

6. spacer 2.14|1622746|30|NC_017593|CRT matches to NZ_LN831184 (Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence) position: , mismatch: 7, identity: 0.767

gcttgctgacgtgcttgctgaggtcgacgc	CRISPR spacer
gcttgttgaggtgcttgctgaggttgggat	Protospacer
*****.*** **************.*. ..

7. spacer 2.15|1622794|30|NC_017593|CRT matches to NZ_LN831184 (Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence) position: , mismatch: 7, identity: 0.767

gcttgctgacgtgcttgctgaggtcgacgc	CRISPR spacer
gcttgttgaggtgcttgctgaggttgggat	Protospacer
*****.*** **************.*. ..

8. spacer 2.18|1622938|30|NC_017593|CRT matches to NZ_LN831184 (Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence) position: , mismatch: 7, identity: 0.767

gcttgctgacgtgcttgctgaggtcgacgc	CRISPR spacer
gcttgttgaggtgcttgctgaggttgggat	Protospacer
*****.*** **************.*. ..

9. spacer 2.11|1622602|30|NC_017593|CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 8, identity: 0.733

gcttgctgacgtgcttgctgaggtcgacgc	CRISPR spacer
ccttgcggacgtgcttgctcaggttctctg	Protospacer
 ***** ************ ****.  *  

10. spacer 2.14|1622746|30|NC_017593|CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 8, identity: 0.733

gcttgctgacgtgcttgctgaggtcgacgc	CRISPR spacer
ccttgcggacgtgcttgctcaggttctctg	Protospacer
 ***** ************ ****.  *  

11. spacer 2.15|1622794|30|NC_017593|CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 8, identity: 0.733

gcttgctgacgtgcttgctgaggtcgacgc	CRISPR spacer
ccttgcggacgtgcttgctcaggttctctg	Protospacer
 ***** ************ ****.  *  

12. spacer 2.18|1622938|30|NC_017593|CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 8, identity: 0.733

gcttgctgacgtgcttgctgaggtcgacgc	CRISPR spacer
ccttgcggacgtgcttgctcaggttctctg	Protospacer
 ***** ************ ****.  *  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 42314 : 53770 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 105029 : 129098 24 Streptococcus_phage(66.67%) bacteriocin,tRNA NA
DBSCAN-SWA_3 418894 : 481369 58 Bacillus_phage(16.67%) transposase,bacteriocin,tRNA NA
DBSCAN-SWA_4 799136 : 874515 66 Streptococcus_phage(47.06%) protease,integrase,transposase,holin attL 795435:795475|attR 871636:871676
DBSCAN-SWA_5 882851 : 891612 8 Streptococcus_phage(87.5%) NA NA
DBSCAN-SWA_6 1182005 : 1248268 59 Bacillus_phage(21.43%) protease,transposase,tRNA,holin NA
DBSCAN-SWA_7 1325785 : 1331564 9 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_8 1425176 : 1431927 9 Streptococcus_phage(50.0%) protease NA
DBSCAN-SWA_9 1713034 : 1720366 9 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_10 2071159 : 2079913 9 Streptococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage