CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015497	Glaciecola sp. 4H-3-7+YE-5, complete sequence	4 crisprs	Cas9_archaeal,RT,cas3,DEDDh,WYL,csa3,DinG	0	1	1	0
NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	2 crisprs	NA	1	3	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015497_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015497_1

1793496-1793574

Orphan

Consensus_repeat	Method
AATTTAACAGGACACCCAAGTTAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015497_1

>merge|NC_015497|1|1793496-1793574|CRISPRCasFinder
AATTTAACAGGACACCCAAGTTAACCAAAATTTAAAACCAAAATTTAACAGGAGAATTTAACAGGACACCCAAGTTAAC

>NC_015497|1|1|1793496-1793574|CRISPRCasFinder
AATTTAACAGGACACCCAAGTTAAC	CAAAATTTAAAACCAAAATTTAACAGGAG
AATTTAACAGGACACCCAAGTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015497.1\|WP_013753376.1\|1787942_1788764_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NC_015497.1\|WP_013753377.1\|1788870_1789326_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013753383.1\|1796111_1796369_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013753385.1\|1796972_1797500_+\|DUF3750-domain-containing-protein	unknown	unknown	gnl\|CDD\|378882
NC_015497.1\|WP_013753387.1\|1799534_1800203_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238497
NC_015497.1\|WP_013753373.1\|1782348_1782948_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|260084
NC_015497.1\|WP_013753382.1\|1795573_1795978_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013753378.1\|1789449_1790346_-\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013753374.1\|1782997_1784869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379980
NC_015497.1\|WP_013753375.1\|1785623_1787861_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_015497.1\|WP_013753388.1\|1800473_1801211_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013753380.1\|1794298_1794769_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180240
NC_015497.1\|WP_007990753.1\|1791256_1791673_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NC_015497.1\|WP_013753381.1\|1794899_1795493_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_007990778.1\|1798526_1799498_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200601
NC_015497.1\|WP_008305274.1\|1791741_1792653_+\|DUF1838-domain-containing-protein	unknown	unknown	gnl\|CDD\|378086
NC_015497.1\|WP_013753379.1\|1790471_1791257_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NC_015497.1\|WP_013753386.1\|1797600_1798527_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200601
NC_015497.1\|WP_013753384.1\|1796365_1796557_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013753372.1\|1781218_1782211_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190

Protein	Function_ID	Function_description	E-value
NC_015497.1\|WP_013753376.1\|1787942_1788764_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.74045e-12
NC_015497.1\|WP_013753375.1\|1785623_1787861_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.98867e-51
NC_015497.1\|WP_013753372.1\|1781218_1782211_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	3.22759e-151
NC_015497.1\|WP_013753387.1\|1799534_1800203_-\|isochorismatase-family-protein	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	1.16702e-38
NC_015497.1\|WP_013753373.1\|1782348_1782948_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|260084	cd08547, Type_II_cohesin, Type II cohesin domain, interaction partner of dockerin. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type II cohesins; their interactions with dockerin mediate attachment of the cellulosome complex to the bacterial cell wall.	1.03865e-05
NC_015497.1\|WP_013753374.1\|1782997_1784869_-\|hypothetical-protein	gnl\|CDD\|379980	pfam17517, IgGFc_binding, IgGFc binding protein. This domain is found at the N terminal of human IgGFc-binding protein and has been shown to confer IgG Fc binding activity. It may play a role in immune protection and inflammation in the intestines of primates.	3.92925e-67
NC_015497.1\|WP_013753385.1\|1796972_1797500_+\|DUF3750-domain-containing-protein	gnl\|CDD\|378882	pfam12570, DUF3750, Protein of unknown function (DUF3750). This family of proteins is found in bacteria. Proteins in this family are typically between 175 and 265 amino acids in length.	5.16819e-67
NC_015497.1\|WP_013753380.1\|1794298_1794769_+\|hypothetical-protein	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	0.000357975
NC_015497.1\|WP_007990753.1\|1791256_1791673_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	3.61107e-21
NC_015497.1\|WP_007990778.1\|1798526_1799498_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200601	cd10979, CE4_PuuE_like, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases. The family includes a group of uncharacterized prokaryotic polysaccharide deacetylases (DCAs) that show high sequence similarity to the catalytic domain of bacterial PuuE (purine utilization E) allantoinases. PuuE allantoinase specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. It functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCA-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. PuuE allantoinase appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common feature of DCAs which are normally metal ion dependent and recognize multimeric substrates.	3.86026e-152
NC_015497.1\|WP_008305274.1\|1791741_1792653_+\|DUF1838-domain-containing-protein	gnl\|CDD\|378086	pfam08894, DUF1838, Protein of unknown function (DUF1838). This family of proteins are functionally uncharacterized.	3.62307e-120
NC_015497.1\|WP_013753379.1\|1790471_1791257_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	3.68027e-63
NC_015497.1\|WP_013753386.1\|1797600_1798527_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200601	cd10979, CE4_PuuE_like, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases. The family includes a group of uncharacterized prokaryotic polysaccharide deacetylases (DCAs) that show high sequence similarity to the catalytic domain of bacterial PuuE (purine utilization E) allantoinases. PuuE allantoinase specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. It functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCA-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. PuuE allantoinase appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common feature of DCAs which are normally metal ion dependent and recognize multimeric substrates.	1.42915e-140

>NC_015497.1|WP_008305274.1|1791741_1792653_+|DUF1838-domain-containing-protein
MKKLKLASLILLAGASFNSAFAATKLDLNTPEGANMAMRKIQCSTIDDKPVFYWWKGKVFSRRQGEVDKHIFNVEGMNVRTCGTVDGGKKGKAYRLVTREILLYTDKKTGQPLDTWENPWTNEVVDVHHVLNDPVNQPPSFPRNEDGTASPWKQKFGGDIKGDYWWMTFPVPLFYHNDLGGDYQKQVGGVYHASELFNFSGDLESLTSSEKDTADVHVGWVRISDWLPFMMMSGREGSIYIHTAGRKVDSFDDMGDVMKTFINEHAPKYKTPPPTDDDRPNETSWTGYKKVVKGEKFKRQRAQ
>NC_015497.1|WP_007990753.1|1791256_1791673_+|PaaI-family-thioesterase
MTDIRFDESFSQCTQQDGFSAHMGPFYEKNINGVMHRALKIQAHHLNPEGVVHGGVTLALADYAIYRGIGDEIGHDIRFATISLNSNLIAAGKEGDVLFAVGHVVRKTRSVIFAEGRIFTNRNIILQATGVWKIIGAN
>NC_015497.1|WP_013753379.1|1790471_1791257_+|enoyl-CoA-hydratase/isomerase-family-protein
MSTVTLNTKGKVAYLSLNRAEKYNALTQAMWQAIANACDTLAQERAIRVLVLKAEGQKAFCAGADIQELHDMLANPDAFSASNQIVQEAQQKLAALPFATIAQINGVCVGGGMGLAMCCDFRIAVEEASFAITPAKLGLLYSLADTQRLVNLVGLPRAKELLYLGKKIDTHTAFDWGLLSQVVERAHLSEATDALVKQILGVSGYSVSGTKRALAYLCDMPNNEALDNKAALQQLFDDAFHGVDFKEGAAAFTQKRPARFD
>NC_015497.1|WP_013753378.1|1789449_1790346_-|hypothetical-protein
MSDPLLGPVVGATLLAPHLKFASHCYQSGMGYTLVREEVVSQQMCELWNTPRLLNSPVHVLAAANGHAWLRIVEDKQCQPTKPLKTHGWMALEVNVANVDVIRKEIDTTVFKVIGEPAYLQISDAIKAMQVIGPCDEVSYITQIDKPVPPFELPMTTARTGSLFIPVLCTPNRDASLAFYESLNQVTGLKFNTKVTVLNNAWGHDIEHQYPVATIQLGGQCLFEIDQVPQAQSAVTNSGSLPSGIAMVTCMIDDLAFAAKQLALPVCEIHNAYYPTAKAILAKGPAGELIELVERPTA
>NC_015497.1|WP_013753377.1|1788870_1789326_+|hypothetical-protein
MTSVLKQLMPAVLEHAGVWQGTYRHIDTKGNTLDFHHSQVECVFPDNGPVVYIQRNQFNWGDGRQFNVAFDGTIKNDKIYWDTDTFKGYGWVASPNIFLLELERKDEPGAWFYESIVMGADKKHRARTWHWFKEGVCFKRTLCDEHLVTSV
>NC_015497.1|WP_013753376.1|1787942_1788764_+|alpha/beta-hydrolase
MHQPVVTRHFTDGQFGQLHYRMAGKVSSKPSIVCLHMVPKSSRSYQHILPLLAQDRLAIAIDYPGYGESSAPFDESQASIETYAHAVWQVLKHLGVIYVDFVGYHTGCMVSVRAAHLYPQWVNKVISIAAPVFLESEVQTFCDMYAPIPLDEKGTRFRIMWERVIQHRGPGMTLQMCADSMAENLRAGEAYEWGHMAAFHHAAQYIEDIKTLPHRLFVMNLNDDMRVQSERVDAYLKNGFRKDYFQWGTGFLDAFPEQVATEWLAFFDDKTLS
>NC_015497.1|WP_013753375.1|1785623_1787861_+|TonB-dependent-receptor
MSKSIKKGYLATVIAAVLATSISPVLAQVAPEEENSVSASSAAAKGGDALKGKELEKIVVTAQRRAQSIQEVPVAVTSIGAADLELKQVTNVLDLQYEIPNISLATNTGTASGARIFLRGVGEDESRVSADPAVGVYVDGVYVGRQVGALFDLVDLERVEVLRGPQGTLYGRNSNGGAIKLISKSPELNENYGLVKATVGSDGRLDGRFTGNLGLTDSSAIRATVLSKSRDGFHTVNPNGDFADQAGTEAGEKDTKALRIALYTEFNEDWNMNLAVDYTKDDSDPVPDSVALANDADNNLFTIEPVPGVTCSAATPAAFLSLGCFNDYRSEVETSGLSLNVQGQIGEYDLSFLTGYRQMEDDLSSRIGFPYSQQTDQDQFSQEVTLTSNYEGAFNFVTGVYYFTEDVQMDSIFVFPSELGIETDAYAAFFQSTYEFNETLTLTTGIRYTDETKAIDALMPVSGGNRNEELDFSNTTYNIALNNQFSEDVMGYVSYSTGFKSGGWSPDCFGVETACFLPVDEEELDAFEIGVRSDLLDNRLRLNATYFYNNYDNLQIASTVPGLGFTRFNVDETKISGIELEALFEVSESLTVNVTFGTIDGEYKEMTLAQAGGLTNSGSSPGCNGEVSIECAKALELKNAPDYKGTIGFTHRMPIAQGLLTSRIDFSFEDDSYSLVANAPAHALTSVGTIINARIAYEPDSEKWAVALWGKNLGDEVYARAAAAGDFTQYVADPLTWGADFEYRF
>NC_015497.1|WP_013753374.1|1782997_1784869_-|hypothetical-protein
MRCLNLLNHSSQLKTLLVMCAWLLGVSALQANAQQIDNKGTEFILAFTPNFDSSGDVEIHLTGDIATQVTINYPMNSPTFTTVENVVPGSVTVVAIPITAISNATPNTIRDNAIHAIATEEFVVYTVNRRAQSSDAALGLPVDTMNTQYIVSTYNPLFSSQFAVYASQDNTVVTITPNNDLNGHVASTPFDVTLNRGEIYYGESATTGPAGSLTGTIIEATRPVGLVNGNRCTNVPNNTSACDHIYEVAQPVQSWGLTASATNLPNRPSGTIYRIVASEDNTSVEINGIFQGTINRGEFIETPLLTGNLSFSGDNPIFVTQYMPGQSSPGATLGDPAMGNMIPSEQYLTDYTFSTVGDSQFVQNFATIIAANADVGSLLLDGVPVPAGDFTPFDDIPFSSAVIELTQGTHTTSSLNPHGITVEGYNGFDSYIYPGGALFGFINSQGDPFPPVCSVTMNGDMASGSVSDNTNDEDLNNNGQLDPGEDANNNGVLDADTGVFFVNTLSSTNVSISVSPFAAGDGSVSVSATRIDGSQPGSASIEGVDGAGNTCALEIEFTDEEAMACDIDGDMNVDMDDLMMIRAARNMSALPGDLRDNDGNGVINTLDFRQCAIQCTQNRCAVL
>NC_015497.1|WP_013753373.1|1782348_1782948_-|PEP-CTERM-sorting-domain-containing-protein
MLNKVKYACYALIALGLVAQSANAALITMTPSSQTIELGDTASIDVSISDFATDQYLGAFDFELAFNDSILSVSNIIFGTELGFSFQDEFSSGANLHAVLESSLEEAQYLIDNQASEFLLFTIEFTGTNYGSSSVAFDSVLLGDQDGNEITDVDFNSARITVNNPNAVPEPSALGILFAGFAVMAFRTRKARSKLNRLN
>NC_015497.1|WP_013753372.1|1781218_1782211_+|NADP-dependent-oxidoreductase
MKENIQVQLASTPESQPQPQHFSVVKGDMPKAQDKQVLCETLYLSLDPYMRSQIAGRHMSGSVNPGDVMRGETVSKVVESHHPDFQEGDLVRCFGGWQNYSVHDGDSVFKIQKEIANPSYALSALGMPGLTAYAGMIWQAQPKAGDVVVIPAAIGGVGSVAGQLAKIHGCTVIGIAGTDEKCDYAVKNLGYDACINRKKGDLGQQLDELCPNGIDIFFDLVGGDMLNTVSERLAVGARVILCGLMADYNKTTRSMGPPPAMWIKARAIVYGLVVYDFEPRRDEFVDACVNYIKEGKLTVREDVANGLVEAPEAFCRLMRGENMGKSVVKI
>NC_015497.1|WP_013753380.1|1794298_1794769_+|hypothetical-protein
MHPNRNAIAFGGLVATVLFFVLLIVLALWTWPKYKVYKLEMNGMASLKEAEWSKQILIEEAKAREAAALMQAKARVTLAEADGKAKIVQAKAEGQADIERAKAAAEANKIIGESLKDNEAYLRYIWIKGLQDGKGERIYIPTEAGLPILEAGKAGR
>NC_015497.1|WP_013753381.1|1794899_1795493_+|hypothetical-protein
MYRIYLFTLLFMPNLVLAKSVLIDSKHSVPSGQVEMRPLQIQCKNNCYLTTHLVAKKFDETSKWNSSAMYVFASASGNEGIRYGIKLNKKSLIPEIVVEYFYSNKESESFVLSESTLGSWEGFKLSWGNGKYQITLLRQEKHEEYSILRDSGIEHSGNVFFEPETLNYMFIGVDVLQYLDIGEQNVNQEWLKIANSN
>NC_015497.1|WP_013753382.1|1795573_1795978_+|hypothetical-protein
MFKIFLLVFVLAAIAYFIYPKSPEAREWLISNNNKHALAGNRFASTQHAISFVENLYSIGAVKVTIPKSVIYDSNNRIQQEGGPYADALEISLPSTQSEREAIFNIANQEASNQGMAFNPESDVINNKLLLWWD
>NC_015497.1|WP_013753383.1|1796111_1796369_+|hypothetical-protein
MPKKSLPRRALKYALISSSIIMFFVFYRILTNGAVGTASEIAFRIVVSAVASFLAMWVVFILYLFFNPDAEIPRERSKFGDKGGK
>NC_015497.1|WP_013753384.1|1796365_1796557_+|hypothetical-protein
MKLLQIMCYEQTAANKTPTGFLGLAYGLTGIVFELIKPLLPRKLNKIWTKNLFKNKTNIKDET
>NC_015497.1|WP_013753385.1|1796972_1797500_+|DUF3750-domain-containing-protein
MKVLAIIALISLLGACSNKDWRTASRESAGLALNPVTDTQASIEVYAADAFSWRGWFAVHTWLAVKQENEPEYTVYEVVGWRVNSGLPALREYQTATPDRFWYGAKPDKVLSIQGDKAARLIPKITDAVKRYPWADEYTLFPGPNSNTFPAWVGLQVPELELDMPFRAIGSGYAD
>NC_015497.1|WP_013753386.1|1797600_1798527_-|polysaccharide-deacetylase-family-protein
MALDKSYLEYSHRSHGMDHDRYDWSMLTDRPKITWPDGKKLALWVNVPLQFFPLDQKGEPFKIQGGMTMPYPDLRHFSLRDYGNRVGIFRFLKAFDKYDVTPTFAMNTQLAKRNPYLLNTIKERGNEVMCHGMHMDALHYGGQDKQLETQLVQDSVNQLRELTEQNITGWLSPGRNESENTPELLAANGIEYFCDWVNDDMPYRFKTDKGNLWAMPLSNELDDVFIMLNNLHSEDSYAEQMIDACDFLLKEANHSGGRILSLNIHPWMLGQPHRIGALEQVLEYVMSQDVYSASASDILQAFTSQTTT
>NC_015497.1|WP_007990778.1|1798526_1799498_-|polysaccharide-deacetylase-family-protein
MKSDPGFYDYWPYENRPKIRWPGGKKMAFWVAPNIEFYELNPPANPSRKAWPQPYPATQGYSIRDYGNRVGHQRQMDLLDKYGIRGSISLSTALCDHHPEIIQMCKERNWEFFSHGIYNTRYTYGMSEQQERDMIKDSMETIYQHTGQKCAGYLAPALSHSELTLDLFAEVGTELFGNEGGIYTCDLFHDDQPTPIHTRSNKPFVSIPYSLEMNDTIAFVVNKIEPRRYGNMLKKNFDRLYAEADESGTIMCIPTHNYQVSCPHRMKAFEEALDYITSHDDVWVATGKEIADHYLEHYYEQAKTDIAQKNAALGPAATHKGAK
>NC_015497.1|WP_013753387.1|1799534_1800203_-|isochorismatase-family-protein
MQTTTKTAKEIYNDVKNNPARKRFGFGNKAVLVNIDPQKAYTCTDEFATAYETDPRQMEYINEMSKTFRALGWPVVWTHVAYMQSAEDAGIWGTRTDTPDSLQNIKFDSRRSEFDNRLEIDYVKDVVYLKKMPSAFFETQLQSLLVWHQVDTVILTGGSTSGCIRATAVDSLSRGYRTIVPEECVADKHESYHYANLTDLSLKYADVLTLNEVNEWLSGQTA
>NC_015497.1|WP_013753388.1|1800473_1801211_+|hypothetical-protein
MKHRTIRGTIQYTSKKPERFGQERGREFFTLTNQSDGVQVMHAHCEIDDEPNVVRDVVQSMRQDCSPIDCSVRLSVGDKYEGSGWLRFTGTYAECETHNQRDGRISQRIELEQPVKWLQSHPIVGDGILMKLYDLPQGPGKTFFPDIMLTSPDHRGATGPLLFKMNGLGIRYVGEESIVVQAGKFIARHFQVVDTAGNLPEEHPPYNLWVTADDDYLLLKAGVDGYMQTHYELTEFEIIGGENEQ

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Crispr_ID: NC_015497_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015497_2

1975948-1976059

Orphan

Consensus_repeat	Method
TGGAACACGCATCAAGTGTAGTTTAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015497_2

>merge|NC_015497|2|1975948-1976059|CRISPRCasFinder
TGGAACACGCATCAAGTGTAGTTTAGGTTTGAAAATTAACCATTTTTAGCGTGGGTGTCCATATAAAGCAGTCGACTCAATAAAGTGGAACACGTATCAAGTGTAGTTTAGG

>NC_015497|2|2|1975948-1976059|CRISPRCasFinder
TGGAACACGCATCAAGTGTAGTTTAGG	TTTGAAAATTAACCATTTTTAGCGTGGGTGTCCATATAAAGCAGTCGACTCAATAAAG
TGGAACACGTATCAAGTGTAGTTTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015497.1\|WP_007991662.1\|1966119_1966803_-\|TIGR02453-family-protein	unknown	unknown	gnl\|CDD\|378166
NC_015497.1\|WP_007991660.1\|1966921_1967734_-\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|235419
NC_015497.1\|WP_007991669.1\|1964738_1965215_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_015497.1\|WP_007991656.1\|1970617_1970836_-\|tellurium-resistance-protein-TerC	unknown	unknown	unknown
NC_015497.1\|WP_008302806.1\|1985374_1986790_-\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NC_015497.1\|WP_008302805.1\|1988014_1988467_-\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013753487.1\|1978112_1979018_+\|histone-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|212541
NC_015497.1\|WP_008302811.1\|1979057_1979342_-\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013753486.1\|1976262_1978104_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223504
NC_015497.1\|WP_008302807.1\|1984676_1985246_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_015497.1\|WP_013753485.1\|1974944_1975928_-\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_007991642.1\|1984471_1984651_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013753483.1\|1967945_1970321_+\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|235809
NC_015497.1\|WP_013753489.1\|1981297_1982455_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181564
NC_015497.1\|WP_013753488.1\|1979338_1980982_-\|response-regulator	unknown	unknown	gnl\|CDD\|381123
NC_015497.1\|WP_013753482.1\|1965768_1966095_+\|RnfH-family-protein	unknown	unknown	gnl\|CDD\|377094
NC_015497.1\|WP_007991666.1\|1965340_1965772_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	unknown	unknown	gnl\|CDD\|176855
NC_015497.1\|WP_013753484.1\|1971181_1974223_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_015497.1\|WP_013753481.1\|1962787_1964581_+\|arylsulfatase	unknown	unknown	gnl\|CDD\|293749
NC_015497.1\|WP_013753490.1\|1982522_1984415_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577

Protein	Function_ID	Function_description	E-value
NC_015497.1\|WP_007991662.1\|1966119_1966803_-\|TIGR02453-family-protein	gnl\|CDD\|378166	pfam09365, DUF2461, Conserved hypothetical protein (DUF2461). Members of this family are widely (though sparsely) distributed bacterial proteins, about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown.	4.73778e-76
NC_015497.1\|WP_007991660.1\|1966921_1967734_-\|kinase/pyrophosphorylase	gnl\|CDD\|235419	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator.	7.45173e-128
NC_015497.1\|WP_007991669.1\|1964738_1965215_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	4.77207e-81
NC_015497.1\|WP_013753487.1\|1978112_1979018_+\|histone-deacetylase-family-protein	gnl\|CDD\|212541	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes eukaryotic as well as bacterial Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. In D. discoideum, where four homologs (HdaA, HdaB, HdaC, HdaD) have been identified, HDAC activity is important for regulating the timing of gene expression during development. Also, inhibition of HDAC activity by trichostatin A is shown to cause hyperacetylation of the histone and a delay in cell aggregation and differentiation.	3.34819e-173
NC_015497.1\|WP_008302806.1\|1985374_1986790_-\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NC_015497.1\|WP_008302807.1\|1984676_1985246_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	3.5255e-41
NC_015497.1\|WP_013753486.1\|1976262_1978104_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223504	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion].	5.56154e-104
NC_015497.1\|WP_013753483.1\|1967945_1970321_+\|phosphoenolpyruvate-synthase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0
NC_015497.1\|WP_013753489.1\|1981297_1982455_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|181564	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional.	1.33921e-157
NC_015497.1\|WP_013753488.1\|1979338_1980982_-\|response-regulator	gnl\|CDD\|381123	cd17589, REC_TPR, phosphoacceptor receiver (REC) domain of uncharacterized tetratricopeptide repeat (TPR)-containing response regulators. Response regulators share the common phosphoacceptor REC domain and different output domains. This subfamily contains uncharacterized response regulators with TPR repeats as the effector or output domain, which might contain between 3 to 16 TPR repeats (each about 34 amino acids). TPR-containing proteins occur in all domains of life and the abundance of TPR-containing proteins in a bacterial proteome is not indicative of virulence. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members in this subfamily may contain inactive REC domains lacking canonical metal-binding and active site residues.	2.59684e-36
NC_015497.1\|WP_013753482.1\|1965768_1966095_+\|RnfH-family-protein	gnl\|CDD\|377094	pfam03658, Ub-RnfH, RnfH family Ubiquitin. A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation.	2.51157e-46
NC_015497.1\|WP_007991666.1\|1965340_1965772_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	gnl\|CDD\|176855	cd07813, COQ10p_like, Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	1.99375e-66
NC_015497.1\|WP_013753484.1\|1971181_1974223_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.61813e-91
NC_015497.1\|WP_013753481.1\|1962787_1964581_+\|arylsulfatase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NC_015497.1\|WP_013753490.1\|1982522_1984415_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	3.95829e-162

>NC_015497.1|WP_013753485.1|1974944_1975928_-|hypothetical-protein
MPQSRKSQISLIDTPYYHCVSRCVRQSFLCGTNTLTGQSYEHRRGWVEKRLLFLSTVFAIDICAYAVMSNHTHVVLCVDKALADNWDTESVLKRYHILHKGTLLTQKFVNGDSLTQGELITLDDTVEIYRKRLYDISWFMRDLNEYIARQANKEDDCTGRFWEGRFKSQALLDESAVLACMAYVDLNPIRAKIAKTPETAKHTSIKKRLHAVKHHHAQPSTLMTFVGSSRENMPHGIAYSLKDYCELIDTTGRCIRDDKPGYIDNTQSPILERLGLDSAQWLALTTEFEKHFCYAAGAEQMMNAFKRHTHHQRIRGMSNARQLLQKI
>NC_015497.1|WP_013753484.1|1971181_1974223_+|FAD-binding-oxidoreductase
MPQHELPALDVESSPQSNYQAFFSALRRSEFSGDIEFSYASRLSVATDNSIYQALPQGVVLPKSVADLQVIGELASQFEDVAFSARGGGTGTNGQSLTSGIIVDVSRHMNNILEINPQERWVKVQAGVVKDQLNDALRPYGLFFAPDLSTSNRATIGGMVNTDASGQGSLVYGKTSDHVLGLTSVLADGTLLESSPMSMDEAKKVAEQQSTTGRLVKQILTTCVDKRQQILAKFPRMNRFLTGYDLEHALSDDLSKVDISRVIAGSEGSLAFVAEAKLNVTPISKHKALVNIKYDSFESALRHAPHMVAAKATSVETVDSNVLNLAKQDIIWHQVKELIKEVENKEVLGLNMVEYNGDSEDELREKITLLCANLDSALDSNEGGVIGYQITYDNADIGKIYAMRKKSVGLLGKTKGRKKPLAFVEDTGVPPENLADFIMEFRALLDARNLHYGMFGHVDAGVLHVRPALDMCDPEQEAMIPDISNEVSALVAKYGGLLWGEHGKGYRSEYAPAFFGEELYTELRKIKAAFDPLNKMNPGKICTPIDSDASLVTVGDVKRGEFDRQIPIAMRDAFAPAMNCNGNGLCFNYDTTSTMCPSSKITSDRRHSPKGRAGAMREWLRLLANKQVDVNLLEVQGKTQNFLKRLNNTMGKAQSNDFSHEVLEVMDGCLACKACSSQCPVSVDVPTFRARFLSIYYQRYMRPAKDYLVGNIEAMAPLMAKTPRLINAFLKQQWMNKLIKKTVGYVDTPLLSSPSLKKQLAGHQAGQFDLGSLQALSANERARKVLIVQDPFTSFYEADLLHDLVKLIECLGYEPILLPFMPNGKPQHVKGFLKEFASTAKDSADFLNKLAPLGIPMIGVDPSLVLCYRDEYNKVLGETRGSFEVKLVHEWLATITLPERGSSTDSQYAFFGHCTEKTALPESEKHWQQLFQRVGMSLTPISVGCCGMAGTFGHEASHLEQSKGIYALSWEKAIAKFDTSKILATGYSCRSQVARIEGEKPKHPLQAMLAHLS
>NC_015497.1|WP_007991656.1|1970617_1970836_-|tellurium-resistance-protein-TerC
MKNIRIGLGALLVIAGIVLFIIPGSMLLVIAGLLLLSVDVPLARTWLKRCQSSMARSSAKLDRVLLNRKLKS
>NC_015497.1|WP_013753483.1|1967945_1970321_+|phosphoenolpyruvate-synthase
MQENVLWYQQLGMDDVGVVGGKNASLGEMISNLSNAGVQVPGGFATTASAFNLFLEQSGLEARIHELLDSLDVDDIPALGEAGNTIRQWIIETPFLPELEADITSAFKTLQGDAGDEASFAVRSSATAEDMPDASFAGQQETFLNVKGIDAVMVAIKHVYASLFNDRAISYRVHQGYDHKGVALSAGIQRMVRSDCAASGVMFTIDTESGFEDVVFITSSYGLGEMVVQGAVNPDEFYVHKPTLDKGLPAVVRRNLGSKLTKMIYSDDTSHGKQVEIVDIDRADSVVFSLTDDEVQELAKQAQIIEKHYKRAMDIEWAKDGIDGKLYIVQARPETVRSREDIQVIERFRLNGKASVVCEGRSIGHKIGAGAAKVLGSIEEMDKIQAGDVLVTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGNATDLINNGDKITVSCAEGDTGFIYGDVLDFDVVTSRVDAMPDIPLKVMMNVGNPDRAFDFARLPNEGVGLARLEFIINRMIGVHPKALLNFDQQPSELKEEISEMIAGYESPVEFYIEKLVEGIATIGAAFSPKKVIVRMSDFKSNEYYNLVGGYQYEPDEENPMLGFRGASRYISEEFRDCFALECEAIKRVRNKMGLTNVEIMIPFVRTLEEGRSVIKLLAEQGLVQGDNGLRVIMMCELPSNALLADQFLDIFDGFSIGSNDMTQLTLGLDRDSGVIAHLFDERDPAVKALLAMAIQAAKKRGKYVGICGQGPSDHEDLAAWLVEQGIDSVSLNPDTVVETWLYLGEKHTK
>NC_015497.1|WP_007991660.1|1966921_1967734_-|kinase/pyrophosphorylase
MRTAYYISDGTAITSEVFGHALLSLFTIEFEHITVPFVETEEQAQQVVKKISESFQDDGQRPLVFYTIVNTEVRKIISKSVGINYNFLDQFVAPLEIVLGVPSKPEKHRTHSIHEKTYDIRIEAVNYALANDDGSNLREYDQADIILVGVSRSGKTPTSLYLALQYGIKAANYPFTEEDMGDILRMPPALKRFKDKMFGLTIDPQRLHQIRSERRANSRYASLQQCRMELREVENLYRKEKVPFLNSTRYSIEEISAKILATTGLKRKKY
>NC_015497.1|WP_007991662.1|1966119_1966803_-|TIGR02453-family-protein
MFTHFDPSLFTFLQQLEKNNDREWFNANKQRYEDLVRGPALEFITEMQNWIPLISPHYEATPKKMGGSLMRVYRDVRFSKDKSPYKTNVGIQFRHEIGKDVHSPGFYMHIASEECFLAVGTWHPQPDALRAIREHIQRKPAAYQDAIEHTPFTEFYHMAGDSLVRPPKGYDTQSPMIEEIKRKDFIAICPLDRKQLLEGNVCELAATRYGRAQPLQKFLCDALGLRF
>NC_015497.1|WP_013753482.1|1965768_1966095_+|RnfH-family-protein
MTDKQINLEVVYALPERQALLEVVVENGHTVEEAIRASGILQRFNDIDLTTSKVGIWNRTCKLTDVPQDGDRIEIYRPLIADPKEARRRRAEKAKEEGRANKVTGGRA
>NC_015497.1|WP_007991666.1|1965340_1965772_+|type-II-toxin-antitoxin-system-RatA-family-toxin
MPNVTRSALVAFSAESMFDLINDVQRYPEFLPGCAQTKVTHADEHCMEASLLISKAGIKQWFSTRNELSRGEYIRMNLVDGPFSELRGGWTFKALSDNACKIELNLDFAFSSRLVEMAFGRVFNAIAANMVVAFTNRAKEIYP
>NC_015497.1|WP_007991669.1|1964738_1965215_-|SsrA-binding-protein-SmpB
MKTKKSKSTNNTIALNKKARHDYILQDKIEAGIELQGWEVKSIRSGKVNLSDSYVTLHKGEAFLVGSTIQPLNQASSHVVCEPLRQRKLLLNKRELDKLIGSVERQGYSILATAMYWKKNWVKVEIYLGKGKHEHDKRDAVKDRDWARDKERMMKHKV
>NC_015497.1|WP_013753481.1|1962787_1964581_+|arylsulfatase
MKQAFFLSCALPRALRFLLERVSFIVSVTLLNLSLAQASTADEEIAGLSNVAEQNGTLQHSPTSEAPNILLVVADDLGMFDIGAFGSEIRTPNIDALADNGVSFNSFYTSATCSPTRAMLLTGSDSHAAGLGNMVEHLADNQRGKPGYEGHISPNAVTIATLMKEAGYHTYMAGKWHLGKAPAFLPDRQGFEESFVLLQGGASYFNDMMGLTSQVPKALYRHNGKPVESLPEDFYATEYYADFILQQLNKNQDDDKPFFAYLAFSAPHWPLQVRDEHLNLYRGQYEKGYDILREKRIASAIKQGIIGPNVTPANRDNYMLSWSQLSKEQQKIQAKSMEIYAAVVERMDFQLGRVLTSLRESGELENTVVIFMSDNGADGSDRSKLEGNDTWLPQAWDLSYQNMGKKGSYVYPGAGWARASVGPFQHYKEFLSEGGIRSPAIISFPEVAHKKQMVSDVVSVKDLAPTILDFAGIDHPGHEYQGRAVRPMTGSSIEGFLKGNVASIKQDERVLGWELFGQKAIRKGDWKLLWLSSKPAWLAAPQNSESWRLYNIANDPGEQHDLVSSEPEKFAEMRDAWEQYAIEQSVVLPQWVRAVSD
>NC_015497.1|WP_013753486.1|1976262_1978104_+|GNAT-family-N-acetyltransferase
METALPNRPDWQTLLKSGNRIFIGSNAAVPNALIDDLIASSGELKDIELVQFNTLSESRWVEPQFKDLFRVNALFIGGDKIRQAVAQGRVDYTPCFLSEVPSLFEQDILPLDAALVMVSLPDKYGYCSLGVAVDVNLAAVKKAKYVIAQVNPLMPRTSGHTFIRIDDIAACIQVEQPLPELPHYVPDKITERIGQYVAMLVDDGATLQLGVGKIPNAVLYYLQNHKDLGVHSELITDGIIDLITKGVINNRKKTFHPGKTVASFCLGSQTLYDFVDNNPHVEFYPSDYLNSPANIARNHKMVAINSALEVDLTGQVVADSIGYQFYSGIGGQVDFIRGAAMSPGGKPIIAMPSTAKGGSISRIVPIITEGSGVVTSRGHVHYVVTEFGVASLKGRSIRERALELIRVAHPKFREQLLAKVREHYWVPHYQKNYPRDVPELGPLGFKTIQVDNQSFDLRPLNPADERRLQEFFYSHTKETLFYRYNHYPTQMTREKSCNLVSVDQNHDLALCIVRQHGSVAEIQAVGRYYLNASSNSCEAAFVTRESFHGKGMAKHLLAEMSMIAKKRGLSKMFAIVRADNRNMLRVFESAQFERQPVEEPGEVSLVLQLEDQV
>NC_015497.1|WP_013753487.1|1978112_1979018_+|histone-deacetylase-family-protein
MISHPSCGFHEVGDDHPESPSRLHAINDQLIASRLDAIIDKQQATQATKEQLYLAHDKAYVDSVFASVPEQGIVELAPDTQLGPRSLEAALYAAGANVMAVDLVMQGKAQQAFCAVRPPGHHAEYAKAMGFCFFNNIAVAAHYAMAQYGLERIAIIDFDVHHGNGTENIFFDDERVLFCSSFESPFFPYNMGPGNEHILNLPMPAGTYGDEFMQAIGDKWLPKIDAFAPQLILISAGFDSHYEDDMGHFNLVETDFHWLSAELKKLAVKHCDNKIVATLEGGYALNALGRSVIAHIKGIME
>NC_015497.1|WP_008302811.1|1979057_1979342_-|hypothetical-protein
MKTQLLLASTTLILCLSGCANKQKPCEDILEVKRQEQQCNEWRKTMKNKQHPQQALTAKKRFEEACVDLRYYRDGYDTICKGTDKPIGERKDQP
>NC_015497.1|WP_013753488.1|1979338_1980982_-|response-regulator
MNYSDKRVLIVDDQRPFLTLLRGVVNNMGAQSVVAVQNADSALAACKKEKFDFIICDLHLGSGKKNGYQFLEEARQKNLVKPETVFAVVSADSERPVVFGSVEQHPDDYLIKPFSQAQLNLRLSKAYQKRLALRSVYEAMQKNDTPEAIAACRRLIMSGTRYAKTCCRLLAELYWKAGEFTQAKHMLTPLLAQKPQPWVTIALAKTEMLMTNYDAAIELAIDMCHRNPLLYEAQDILAQCYLLLRDYPNALIAIERAIEIAPYSVERQLIACKIARESHNYEMVKLRSLDVWELSKKSIHRDIAHLCSYFRSILDAAEHCEDKNMRSRYQHEMMTAIARYRNDEALARIDEDFDYGIYENILTARINYLDGRLLEAKRTLNECQQQIAIRFTEYPTAFAPDSIKVMLDLGEYDDAERLSKTLTKSGKQLDESTLFSLKSSVDKAAQRRHSYQNFNKQGIEHYNSGRYQEAYNAFLEAQKVAPVNTGVALNILQCNLKLIAQMKKPETRAINALKQMYRHLKNMVMLESHQQKFESLKSDLGKYVEVA
>NC_015497.1|WP_013753489.1|1981297_1982455_+|FAD-dependent-oxidoreductase
MFDFCIVGGGMVGATTALGLAQKGFSVALVETNMPKPFEHDDEPDMRVSAISVTSQLLLASLGAWSHIAKMRTCSYRRLSVWEAPTARTDFDSADIQAERLGYIIENRILQLGIHEALAQLQNVTWFTQSEITNIAPGSTKQSGAQVHFSDDTELTCKWLIGADGLHSRVRSAANIGTQGWQYRQQAFAIQIVTHAAPQDITWQQFIPTGPVAFLPMYEQFASLVWYNTSDNIKRLKALSKSALKQEIKHAFPDELVDFDVMNTAHFPLMRMHANQYVKNNVVLVGDAAHAINPLAGQGVNLGFKDVAALLECIDDKVPTLDIMQKYEAKRRRDNLLMMSAMDAIYGTFKQRNPLIKTLRSLGLTLANNGGPIKHQVMKYAMGLH
>NC_015497.1|WP_013753490.1|1982522_1984415_+|DUF885-domain-containing-protein
MIKRLLIPLTLSALVGACSSSDERGALNTQTSSANQAKNAASSHASEAQLQTLVEQYTKQFLHHEPLLSTAIGVPESLAGEGYNTRFPDFSPMGMRALQDDMNSAALAVAKVNSQGFSQDEKRHQQIVADILRYYAGFSEFHGGYIDTWAGHLPYIINQLSGPLIDVPKVMQVQQPVSSVAQAEEYIARLAHFDFLVAGVIEKYKADKLNGVQLPKKLYPKTIAYFENFLASPVAEHALVTSFMHKLAQTDISESVQNDLIAKAKEAVKNVVYPAYQTVKDTLQATQAHAPAGDGVWAQPNGDAMYLHEVRYLGDSSLTPDDIHQVGLDEVERISTEMDSILRAQGYDEGSVGKRMVMLAQQQEFLYQDSDEGRAQLLSDLNSQIAEIMTKTDMYYGTLPTQKVEVKRIPKVTEAGEAGGYYSQPSLDGERPGIFWINLRDMSAVPSFSLKTLTYHEAVPGHHFQIALNMAQQDIGLLRQNAPFNAYVEGWALYSELVAKEMGMYQGDPFGDLGRLQAELYRAVRLVVDTGLHRKKWTREQAIEYFHETTGTGMTDVIAEVERYMALPGQALGYKLGMLQFVELRHLAEQALGSEFDLKRFHDLLLLPGARPMSVVRSDVKRWIASNGAQ
>NC_015497.1|WP_007991642.1|1984471_1984651_+|hypothetical-protein
MTVLIILGVLLVALLIVVPLLERSSFRLSNEQMSKMSRWILPLLVVMVIVQLIMHFTSN
>NC_015497.1|WP_008302807.1|1984676_1985246_+|NAD(P)H-dependent-oxidoreductase
MSSKILFLAGSARKDSLNKKLAKVAYELAVEQGADATFIDLKDYPLPIYDADDEVAGGLPENAIKLKALFVEHSGIFIASPEYNSSFSALLKNTIDWISRPHTEKERPLSAFADKVAGLASTSPGALGGLRGLVPLRMLLGNIQVMVIPEQLAIGGGMTAFDEQGNLTNEKQQRALNSIVARLISETSN
>NC_015497.1|WP_008302806.1|1985374_1986790_-|alanine:cation-symporter-family-protein
MISELVSFINNILWGEGQVLIYLLIIAGVWFTLKLNFIQIRHFRHMFSVMKGSGKSDKSGISSFQALCTSLSARVGTGNLAGVAVAISLGGAGAVFWMWVIALLGMATGFAESVLGQLYKVRDDNGEYRGGPAYYIQQGLNKRWLAITFALFLFLGYGFIFSAVQANTITDALNFAYDIPTLHSGLVIIGLAALIVVGGLRAIARFAEWVVPFMAVGYIAVTLFVTIMNIDLLPAMLMDIIQSAFGLQEAGAGALGAAFKNGVQRGLYSNEAGSGSVPHAAASATPNPNHPVSQGYVQMLGVFIDTMILCTCTAFVILLAGGSSSDQMEGIRLTQNAMSSHLGGGGTEFVAAAISLFAFTSVVANYAYGESNLHMFKLDNKLGRACYTTGYLAMILWGSMAALPEVWAAADMALGLMTVINITAIIMLTPTIVSISKDYFDKHKQGKNMEYHTGDCEIQGESEKGIWDKGE
>NC_015497.1|WP_008302805.1|1988014_1988467_-|hypothetical-protein
MKPIFDIQPLIGTAQIPLNAPREQILSTLNQPFKSINKYPERAQSSDAFYRNDVHVSYQGQPTSVESIEFAYSDLYDITLLGESILNLPVKSALSKLEMLTGHTPQTDDNGYTYQIPSLGIWLWRESNDNFDENGFYFFTIGVKAIAEPL

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Crispr_ID: NC_015497_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015497_3

3009027-3009119

Orphan

Consensus_repeat	Method
CGAACAACCAATCGAACAGCCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015497_3

>merge|NC_015497|3|3009027-3009119|CRISPRCasFinder
TGAACAGCAAACCGAACAACCAATCGAACAGCCGAAAGCCGCAATATCACTGGCCTGATTAGGTAGTAGCGAACAACCAATCGAACAGCCAAG

>NC_015497|3|3|3009027-3009119|CRISPRCasFinder
TGAACAGCAAACCGAACAACCAAT	CGAACAGCCGAAAGCCGCAATATCACTGGCCTGATTAGGTAGTAG
CGAACAACCAATCGAACAGCCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015497.1\|WP_013754032.1\|3006967_3007363_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_008305914.1\|3015657_3016500_-\|chemotaxis-protein-CheR	unknown	unknown	gnl\|CDD\|236725
NC_015497.1\|WP_013754025.1\|3000088_3001714_-\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NC_015497.1\|WP_008305912.1\|3016503_3019038_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185008
NC_015497.1\|WP_041248214.1\|3007997_3008183_-\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754037.1\|3010496_3010823_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754035.1\|3009327_3009777_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_148258868.1\|3006397_3006541_+\|DNA-binding-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754034.1\|3008641_3008902_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754031.1\|3006540_3006939_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754040.1\|3013055_3013580_-\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754033.1\|3008281_3008578_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754041.1\|3013985_3015029_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NC_015497.1\|WP_007986671.1\|3015040_3015661_-\|chemoreceptor-glutamine-deamidase-CheD	unknown	unknown	gnl\|CDD\|237396
NC_015497.1\|WP_013754029.1\|3005466_3006156_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754039.1\|3012678_3013017_-\|HIRAN-protein	unknown	unknown	gnl\|CDD\|214906
NC_015497.1\|WP_013754028.1\|3004090_3005470_+\|integrase-family-protein	unknown	unknown	gnl\|CDD\|271189
NC_015497.1\|WP_013754038.1\|3010825_3011932_+\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754036.1\|3009778_3010504_+\|Clp-protease-ClpP	unknown	unknown	gnl\|CDD\|132927
NC_015497.1\|WP_013754026.1\|3001767_3003117_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369347

Protein	Function_ID	Function_description	E-value
NC_015497.1\|WP_008305914.1\|3015657_3016500_-\|chemotaxis-protein-CheR	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	3.89003e-112
NC_015497.1\|WP_013754041.1\|3013985_3015029_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	2.04038e-171
NC_015497.1\|WP_013754025.1\|3000088_3001714_-\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NC_015497.1\|WP_007986671.1\|3015040_3015661_-\|chemoreceptor-glutamine-deamidase-CheD	gnl\|CDD\|237396	PRK13487, PRK13487, chemoreceptor glutamine deamidase CheD; Provisional.	4.33359e-124
NC_015497.1\|WP_013754039.1\|3012678_3013017_-\|HIRAN-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	5.72157e-09
NC_015497.1\|WP_013754028.1\|3004090_3005470_+\|integrase-family-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.5747e-17
NC_015497.1\|WP_013754036.1\|3009778_3010504_+\|Clp-protease-ClpP	gnl\|CDD\|132927	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	1.70697e-72
NC_015497.1\|WP_013754026.1\|3001767_3003117_-\|hypothetical-protein	gnl\|CDD\|369347	pfam07396, Porin_O_P, Phosphate-selective porin O and P. This family represents a conserved region approximately 400 residues long within the bacterial phosphate-selective porins O and P. These are anion-specific porins, the binding site of which has a higher affinity for phosphate than chloride ions. Porin O has a higher affinity for polyphosphates, while porin P has a higher affinity for orthophosphate. In P. aeruginosa, porin O was found to be expressed only under phosphate-starvation conditions during the stationary growth phase.	0.000309222
NC_015497.1\|WP_008305912.1\|3016503_3019038_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	3.04371e-104

>NC_015497.1|WP_013754034.1|3008641_3008902_+|hypothetical-protein
MNTNTYSVNQNSLQDAFINLSQVSAMLNMLAENGDGGTCFTSHEDAIQVIHGCRQMINDTKTKLESNAVANTPAHLSVDELPSSGM
>NC_015497.1|WP_013754033.1|3008281_3008578_+|hypothetical-protein
MKDKTKSINDYSDTISNNVTKAYAISVVLQAAIEQDDPPGQEVLSNTTWALIDLLAKADQASERILEIEHGHKRGEKPQATNSGADASTTRESGVKAA
>NC_015497.1|WP_041248214.1|3007997_3008183_-|hypothetical-protein
MQEENKNNSPRSDKRTTSTKKNMRFENELIEKIDAVRSDQPFSEWVKDACWTKLSKTVKND
>NC_015497.1|WP_013754032.1|3006967_3007363_+|hypothetical-protein
MAKSQPFAGIPNRVIDHPDFNKLSGNEIRLLLWFAYQYKGKNNGKLCAVWSQVKHRGFKSQTTLSNAIKGLRQKGFIELSKGNALTQNGRTPNYYAITWEMVNDIPGFQMDLKPTRTALRTFIDVIDKHRP
>NC_015497.1|WP_013754031.1|3006540_3006939_+|hypothetical-protein
MKKAATQPSNDSLSLDTKKTSSNKRKTQKEKTLEAFIKAGQDGYYQIPAYRAFQTTCLHTVVSNFQKEGIMFARRPIAHRNSDGGETTFTLYWLEDDEAILRALTRLNYLRAKRGLPPYKGAHPYLLDSLIA
>NC_015497.1|WP_148258868.1|3006397_3006541_+|DNA-binding-protein
MRLSRSTGLLLGTNAPKHSKYGRAVRYHAGDLMNWFEQNENQDSEAA
>NC_015497.1|WP_013754029.1|3005466_3006156_+|hypothetical-protein
MISNFLDQKELFNILSDEQGWSSGEFAAQIALQSREKISSFGVDTLRNYSKEEIKEIIVELGESKCQELIALRNLNKVCDYAVLARKKFREDTSIPHNAVFGLGADSTALIIGYLLKTYNTDPELDAQELYQLLNSNKQSERALGSMRHAKKVVMQQAPDLMRRVHTDGFNPSFKEVAEHLYSLLLNKFQTDDIPELDTLKDWVRQCKPEGHNPRTGKKPNGYRSIFET
>NC_015497.1|WP_013754028.1|3004090_3005470_+|integrase-family-protein
MAKTGDTSITKTQAVNFARDATNMAELSCDKIKGFHLVKTQKGATWRLRYTDFSGKRRKLSLGKLVDGTSDRMKAVDLAQEYRGELSKGKDPVAEITKLKAKFKTDSELRETRLLRTYLEGPYKKHQAKKKDGGRHTLDLISRAFSDLLDTPMDAITKKDLADWQEKYRIGNDGKIRAHSTTVRSFSALRTLLRHAVHSGTIASDPTTNFKLSSEADEDKEKRLSGDSPVKRRMLTSQELTGISQGIALYKEELINKRENSRKHGQANLPTLNNLAHPHWFFPFFRLAAYTGMRPGDLYSLNWQELNLTFSRLVKVPNKTRHHGNPSKLDLPLDQNITEVMDSWHKQLGSPVNGLVFPSPVNGNKMDKKAHIRHWKSVLQLGGVNSDIDFYSLRHHYISKLVANSVPLFTVARLAGHKSTKMIEEHYGHLAPHAAAEALSLISGDFLATQSNQLNLEIK
>NC_015497.1|WP_013754026.1|3001767_3003117_-|hypothetical-protein
MKLTQCIKPGLLSVAIASSFSTSAVEVSEQELATLKAQIAALQTRLAQLEEQAKPVSQSENQPSSSQNQSTESVDLAKQQKSVETNSVETTEAEESTDGIKFGGAIRTNYSYTSYDDGNKNRGGDFDFDIFRINMSGEVGGVTLNSEIRFFDYMTAVKYAYAGYQFSENWQVQAGITQVPFGNQAYNSQNYFFSTNYYLGLEDDFDLGVVFKRSVADNWQLDVGFFKNDELGGVDGYVDNRSDRYSYDIVGIRTQGEGIYDEPTEGLGEYNTLAGRFAYHFNTGEVKTEVGVSALHGGIHNGEKRAGDYQAWAFHTSSQYQNWHLQFQHSQYDYDIGQADRLAVGAYSFYDSIAADAKSTTLNIAYDMAVDFGPVTDLQFYNNFGLVYDKSDDSEDTMMNVLGMSVAAGGLFTYFDLVHAKNQPFIGGSAAGDTDETEQRFNINIGYYF
>NC_015497.1|WP_013754025.1|3000088_3001714_-|BCCT-family-transporter
MKEKNDPMIPDGEVNPIDTDYQVGQDNIVVNVGPFGLDIHNRVFAVSGVMIIAFVVLTLLFQAEAEPFFGNIRTWLTGNLDGFFMGAANIFVILCLALVVSPLGRVRLGGTEAKPDYSYLGWFSMLFAAGMGIGLMYYGVSEPLGHFGTAFAGPTFENGVRTDYAPLAGAAGDAAAAQKLAMAATIYHWALHPWAIYAIMALGLALFSFNKGLPLTIRSVFYPILGERVWGWPGHIIDILAILATLFGLATSLGLGASQAASGLHSVFGLPLGETTEILLVLGITGLALFSVVAGLDAGVKKLSEINMILAVLLVFFVLVVGPTIAILTGFFDNIVSYFRYLPQLANPVGREDTGFATGWTAFYWAWWISWSPFVGMFIARVSRGRTVREFIISVLLVPSVACVFWMTVFGGTAIQQVVADGYQTAVNAELPLQLFAVLDGLPLASITSFIAIVLVIVFFVTSSDSGSLVIDVISAGGKVEAPTPQRVFWCVFEGLVAVSLILGGGLIALQAMAVSTGFPFTIVLLIAAFSMVKGLMSEPR
>NC_015497.1|WP_013754035.1|3009327_3009777_+|hypothetical-protein
MNTLIAFTKPMNLTEAKFTKSEVLENSYVTSAQFNNWVFRGLVPRLELGFKLESFTRAKYSLLVIAYCRSLAYHTGPRKGDYVKILKQVFRQVAQSGEFNSKLVIAIDGFGRGKDCGAFENAEIAKKLFSRQCAIVPVGKILTNYIEAL
>NC_015497.1|WP_013754036.1|3009778_3010504_+|Clp-protease-ClpP
MSNRSELNAFTGVNKLYIDDDIGKDGITAKKFKDELNKQRGAIEVHINSAGGVVTEGIAIYNALKAYTGKKTVIIDSLAASMASVIAMAGDVVQMPSNGLMMIHNPWGVSSGQATEHRKTADLLDVMKDAMLAAYMLKTNLDEAQLSELMDGETWMNGEDCLKLGFIDTLSDSVTENKITAQFHQVCIARTQEVQRSEQAISADVRETAAKICHHRKMPQPANLFKSQNDKPTHYSEIKNV
>NC_015497.1|WP_013754037.1|3010496_3010823_+|hypothetical-protein
MSNIETLYSKEFKGNEASFSFKAKSKTLHLIVEERVNVSSISVSLKGKKRDVSVLHIHSNLNAVCEIPLFKDETYSVVLSSAGQLGRNDKDEHFEKPSLATISAIWEA
>NC_015497.1|WP_013754038.1|3010825_3011932_+|hypothetical-protein
MTSIVSIQAKAHQFLSEKYKGQTVQPFSTLINPLLEQSGIQLNYNEPKERREALKAFLNHVDFKTILVDTLNNLLIDKWSATSETWRIWVNNYGLTDFKPTRVTAVGVVPKPGKIPPGAEYTFTELHGEQTSAKLDTYGNLINIERQTIFSDDISAINSFLGGVAAAYDRQIGDKVYEFLTENPVSFNDKEIFHEDHNNLVTATSDFGDDLSKAIEIMYGQKISIDSIPTRVPLLDESGDPVLDGEGEPVYTAGPPNFIYEKIRVQPKYLLVPPAKAIIAAKVAGEYNKAVTEQQKLIVIVEGRLTGFAGWFLACDNPFASIALFTLRERTIPEIFTNSLFTNDGLQVKHRMDYDVSPTDYRGLVRVS
>NC_015497.1|WP_013754039.1|3012678_3013017_-|HIRAN-protein
MGIFHTKLVGVKHKAPDGIDRQKIIGKFCKEEMELELIPEPLNKYDSDAIGVWITVNGLISSKRYHIGYISTEISFRLSEEIQKGKEVYAYIKNVTGGLHGKSLGVNITIES
>NC_015497.1|WP_013754040.1|3013055_3013580_-|hypothetical-protein
MKNILALLAFVTLQSNAGMTLDLTDPDLVNIADQYPDYQAMKYLNFDDTAGKFSLTGFKENIDDDDWDPIFSAYIGLGNDAKQRVYIGLPKDCSDRDESYDILTIKANGQNVRFFQLCDGKNIYLSAFSAAGDKYVIREFQEKKVVKFELAGFPILFSAEGFTKAWDNYGGDAL
>NC_015497.1|WP_013754041.1|3013985_3015029_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MTIRVLIVDDSALIRSLIGAIVEQRPDMQLVGAAPDAYAARDMVNKYKPDVITLDIEMPKVDGLTFLDKLMKARPTPVLMISTLTEQGADATLRALELGAVDFIAKPKLGISEGIQQYQEVIVEKIRQVAKAKVERANVSTVTTPARLPLLSTEKIIAIGASIGGTEAIKKVLMAMPANSPAVVLTQHMPPGFTTSFAKRLNGCCSLAVKEAEHGERILPGNAYLAPGAMHLKIVKSGADYRIELDSEGIVSGHKPSVDVMFESLVPFAKNVVAGILTGMGKDGAQGLLHIKQNGGFTLAQDEASCVVFGMPKVAIELNAVTQVKDIHDITPTLLGYLTQNNAGSRL
>NC_015497.1|WP_007986671.1|3015040_3015661_-|chemoreceptor-glutamine-deamidase-CheD
MSDYYADFNTNGMVPNRYYDRHFECDAIKILPGEYYATTEQTLILTVLGSCVAVCLRDPKLKIGGMNHFLLPSDNAGDNPVSASARYGVYAMEILITQILKLGGDKRRLEAKVFGGGAVLQGMTTNIVGQRNAEFVVDFLKTEQIPILASDLLDIYPRKVYFFPETGEVKVRKLKSLHNTTILDRESEYRLKLKRNAQATGDVELF
>NC_015497.1|WP_008305914.1|3015657_3016500_-|chemotaxis-protein-CheR
MVSNIGGGAAKQEFAFSQSDFQQVKGILYKKTGIQLADSKDSMVYSRLARRLRALKLPHFAAYLQYLATHENEEQHFINALTTNLTSFFRESHHFPVLKRYLQEMPNSRRIWCAASSTGEEPYSIAMTVAEMYGRFDVPIEIIASDIDSKVLQTARDGIYPIERIEGLSLEQKKRFFQKGTGSNAGKVRVVPELAKMVSFTQLNLTAKEWQISSPIDVIFCRNVMIYFDKETQIRILERMVSMMSKKGIYVAGHSENFAAAEHVVKLLGKTVYKPVKRSV
>NC_015497.1|WP_008305912.1|3016503_3019038_-|methyl-accepting-chemotaxis-protein
MSLFGWLGSKSSKASQMRDQAILDAIDRSQAVIEFDLNGIIQAANDNFLTAMGYRADEVVGKHHSMFVDEAYKNSQEYRDFWAQLNRGQFTSDVYKRVAKGGKVVWIQASYNPLFDEEGKPNGVIKYATDITAQKIQSTDHAGQIDAISKSQAVIEFDMNGVILSANDNFLNAMGYNEQEVVGKHHSMFVEPEYKNSHEYHLFWEHLKAGEFNSGEFKRIDKLGNDVWIHASYNPIMDLNGQPFKVVKYASDITEQKKRNADYSGQIDAISKSQAVIEFDMKGVIQRANENFLETMGYTLEEVQGQHHSMFVEPEYKNSAAYREFWEKLNAGQFTSAEFKRIGKQGNEVWIQASYNPIMDVNGKPFKVVKYATDITAQKLHNADYSGQIDAIGKSQAVIEFDMNGVILSANDNFLNAMGYNEQEVVGKHHSMFVEPEYKNSHEYRAFWEQLNNGVFTSDEFKRIAKQGNEVWIQASYNPILDLNGKPFKVVKYATDITARKQAINEVKRVLNLLSDGDLTAKLNHQFSGEFHELGENVTRFIASLADTIGQINGSTETIRNASSEIAQGNSDLSNRTERQASSLEETASTMEELTGTVRLNAENANQANGLASQASTVASEGGDLINQVVATMSSINDSARKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSANAAKDIKELISDSVAKIENGNTLVNRSGETMDNVVTSIKRVNDLMAEIAAASAEQASGIDEVGKAINQMDEATQQNAALVEEATAAAESLQSQAEQLSERVAAFKFDENDLQVTPRLAPQPKAETKRPVQHKERIKLVQATTQEEDEWESF

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Crispr_ID: NC_015497_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015497_4

4765969-4766090

Orphan

Consensus_repeat	Method
CTCAGAATGCGTACAGCGGTTTTTGATTAAGGCGTCGCTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015497_4

>merge|NC_015497|4|4765969-4766090|CRISPRCasFinder
CTCAGAATGCGTACAGCGGTTTTTGATTAAGGCGTCGCTATAAAGTAATGGTTATACCAATCCGCATTAATAAGTGACCACCTCAGAATGCGTCCAGCGGTTTTTGATTAAGGCGTCGCTAT

>NC_015497|4|4|4765969-4766090|CRISPRCasFinder
CTCAGAATGCGTACAGCGGTTTTTGATTAAGGCGTCGCTAT	AAAGTAATGGTTATACCAATCCGCATTAATAAGTGACCAC
CTCAGAATGCGTCCAGCGGTTTTTGATTAAGGCGTCGCTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015497.1\|WP_013754930.1\|4762132_4763083_+\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
NC_015497.1\|WP_013754927.1\|4754549_4755965_-\|Na+/H+-antiporter-NhaA	unknown	unknown	gnl\|CDD\|377746
NC_015497.1\|WP_013754939.1\|4777132_4779589_-\|penicillin-binding-protein-PBP4B	unknown	unknown	gnl\|CDD\|179620
NC_015497.1\|WP_013754937.1\|4772465_4773656_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|378725
NC_015497.1\|WP_013754934.1\|4768910_4770392_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|226702
NC_015497.1\|WP_013754928.1\|4756176_4757418_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_015497.1\|WP_007985626.1\|4752045_4753212_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NC_015497.1\|WP_013754935.1\|4770474_4770708_-\|hypothetical-protein	unknown	unknown	unknown
NC_015497.1\|WP_013754940.1\|4780037_4783115_+\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NC_015497.1\|WP_008305374.1\|4760524_4761055_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_015497.1\|WP_013754933.1\|4768450_4768909_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NC_015497.1\|WP_007985628.1\|4753236_4754424_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340928
NC_015497.1\|WP_041248267.1\|4766451_4768434_-\|response-regulator	unknown	unknown	gnl\|CDD\|237951
NC_015497.1\|WP_013754938.1\|4775401_4777072_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_015497.1\|WP_013754931.1\|4763090_4765526_+\|RND-family-transporter	unknown	unknown	gnl\|CDD\|223964
NC_015497.1\|WP_007985639.1\|4757420_4758527_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|184032
NC_015497.1\|WP_013754936.1\|4770711_4772043_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NC_015497.1\|WP_007985641.1\|4758538_4760032_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NC_015497.1\|WP_008305381.1\|4773657_4775124_-\|RimK-family-protein	unknown	unknown	gnl\|CDD\|223267
NC_015497.1\|WP_013754929.1\|4761165_4761738_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211400

Protein	Function_ID	Function_description	E-value
NC_015497.1\|WP_013754930.1\|4762132_4763083_+\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	3.90512e-71
NC_015497.1\|WP_013754927.1\|4754549_4755965_-\|Na+/H+-antiporter-NhaA	gnl\|CDD\|377746	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyze the exchange of H+ for Na+ in a manner that is highly dependent on the pH.	6.93337e-156
NC_015497.1\|WP_013754939.1\|4777132_4779589_-\|penicillin-binding-protein-PBP4B	gnl\|CDD\|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	5.13152e-166
NC_015497.1\|WP_013754937.1\|4772465_4773656_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|378725	pfam11814, DUF3335, Peptidase_C39 like family.	1.24024e-126
NC_015497.1\|WP_013754934.1\|4768910_4770392_-\|histidine-kinase	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	1.27043e-60
NC_015497.1\|WP_013754928.1\|4756176_4757418_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_015497.1\|WP_007985626.1\|4752045_4753212_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	2.00944e-42
NC_015497.1\|WP_013754940.1\|4780037_4783115_+\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	5.26282e-11
NC_015497.1\|WP_008305374.1\|4760524_4761055_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	2.68065e-19
NC_015497.1\|WP_013754933.1\|4768450_4768909_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.93078e-65
NC_015497.1\|WP_007985628.1\|4753236_4754424_-\|MFS-transporter	gnl\|CDD\|340928	cd17370, MFS_MJ1317_like, MJ1317 and similar transporters of the Major Facilitator Superfamily. This family is composed of Methanocaldococcus jannaschii MFS-type transporter MJ1317, Mycobacterium bovis protein Mb2288, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.000193579
NC_015497.1\|WP_041248267.1\|4766451_4768434_-\|response-regulator	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	3.97532e-71
NC_015497.1\|WP_013754938.1\|4775401_4777072_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	3.59695e-67
NC_015497.1\|WP_013754931.1\|4763090_4765526_+\|RND-family-transporter	gnl\|CDD\|223964	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only].	2.71237e-84
NC_015497.1\|WP_007985639.1\|4757420_4758527_-\|glutamate-5-kinase	gnl\|CDD\|184032	PRK13402, PRK13402, glutamate 5-kinase.	0
NC_015497.1\|WP_013754936.1\|4770711_4772043_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.71503e-151
NC_015497.1\|WP_007985641.1\|4758538_4760032_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_015497.1\|WP_008305381.1\|4773657_4775124_-\|RimK-family-protein	gnl\|CDD\|223267	COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis].	2.09103e-54
NC_015497.1\|WP_013754929.1\|4761165_4761738_-\|hypothetical-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	1.16482e-07

>NC_015497.1|WP_013754931.1|4763090_4765526_+|RND-family-transporter
MSRFLADFIIRHAKLILLAFAILGGLAAWSAQQFKIDASADTLLIKNNKLFVETQVVNERFSPQEFILVAYKPKNHALFSQRTFNDIQQISSELTALPRVGEVTNILNVPLLTLTDELDPNLEPDQLTWQANRYSAEKMREVFTDHPLFTDLLVNQDQTATAMQIVFKPNKELLDIQSQIIAIQKKILDNEDGELSEQDEQKIEALKTKAQPIEEKLKETRQQEIKQIYQIIKPYKDDSDLYLGGAYVLGQQMIDIIQSDLTIFGSAIGLAICVILFLLFRKIRWVILPLLCCGLSVILTVGLFGLLDLRATVISSNFIALQLILTLAVVVHLIVEFRQREEADDEASQQALLRQTFINKFKPCLYAGITTSVGFASLIFSGIQPVVSFGWMMIVAMGVSICVSLLLFPAVLASFKRKGDSHESRFSRYIVSSISGFTLKFPTFIVLTTLVVGGGAIFGILKLDVENSFLNYFKESTQVRTELEFIDQEFGGSTPLDLIYTIPEDERRDDLVMSAKTIQTLQKIQHVMRQYDATGNITSVVNFTELAKKINQGKPLTEYELTVIYKLLDESLTDQLLGAYFNPENNQLRISTRIQDSTENFNRAEFLETFRSDLDMLDISPDSYSLTNLFVLYQDILQRLFASQIMTLGLVFCALFVVLLVIFRSIKVALIAVLPNILTTLVILGVMGWLSIPLDLMTITISAIAMGIAVDDTIHFVHRYLEELNGRNSHNDADNQAAIDKTFKSVGYALIYTTTIIAIGFSLLSFSDFVPSILFGLLTSLAMLLAFITDTTLLPVLLKKFVKRKSTSPAS
>NC_015497.1|WP_013754930.1|4762132_4763083_+|VacJ-family-lipoprotein
MLTHHLLKKFISGSLLSASLFLSACSTHSPQQAPEQAEVSNKAGSELVVNSSHGEQTIEPTVVSYPAQNNAQGVSNSENIAFDDPLEFINRPIFAFNDKLFEYILIPAAKGYTNVVPDPVRTSVGHFFGNIREPLNALNQLFQGEVSDSGKSIGRFFINTTVGLLGFFDPATAWFEIDENVSTINDTLVKYDVGYGSYLVLPILGQSDLRNGFSTITESVFHPIQYAAESPETLYIQSYGGFHAFAPEAPTYEELRKETDDPYVFFRNLYMQSMLRDQQYPAENQEPQNVEPSTNDNNATSTPSELADDAPASSQE
>NC_015497.1|WP_013754929.1|4761165_4761738_-|hypothetical-protein
MQYKSVLFGLFATLSLISLGGCSTTTDATVTQKRQAVQTMNDKVLTELFALKPSVRSQINSAPGYAVFDNANVNLILASFGGGYGVVTDNQTGQQTYMKMAEVGLGLGAGIKDFRVVFVFHNEAVMSRFVEKGWAFGAQADAAAKAGDKGVAKGGEVTVDNITIYQLTESGLALQATVKGTKYWKDDELN
>NC_015497.1|WP_008305374.1|4760524_4761055_+|winged-helix-turn-helix-transcriptional-regulator
MKKYDELLVSLRRVIRAIDLYSKKLSKESGLTSPQLIVMQEIYNNDDVMVKDIASHINLSSATVTSILDRLEARGYVVRERSQIDKRKVGVRLTESGASAFNNAPTLLQEHFINRFESLDEWEQTQLVSTMQRIAKMMDAEALDAAPLLQVGQIHTLNAAGETTAKPSSSADTAKP
>NC_015497.1|WP_007985641.1|4758538_4760032_-|sodium/proline-symporter-PutP
MSYISLAVYFIAMLGIGVFAYRRSTSDMSGYILGGRQVSPQVTALSAGASDMSGWMLMGLPGAMFVGGFDSMFIAIGLLIGALANYILVAPKLRVYTEVANDALTIPEFFAKRFNNKASSIRIISAGIIVMFFTLYTSAGLVAGGKLFESAFGLDYQLGLFITLGVVVSYTLLGGFLAVSLTDFVQGCIMFIALALVPIVAYQQFTDSSEMLGFAYQSIPSFSQTMSDITWLGLLSSLAWGLGYFGQPHIIVRFMAIRSVPAVKTARNIGMSWMTVTIIGALSTGLVGVAYANKFNLAVDDPETIFIIFSELLFNPIISGFLLAAILAAIMSTISSQLLVSASSLTEDIYRLKAGNEVSDEQTVKMGRYGVAGVAIVALLLSLDSNNSILSLVSNAWAGFGAAFGPLVLFCLYKANLTHKAAVAGIISGAVTVLVWIYAPLLPDGQALSSVMYEIVPGFIVSAGVIWLVSKFGEEPSQATAAMFDETNQVLAKQHSN
>NC_015497.1|WP_007985639.1|4757420_4758527_-|glutamate-5-kinase
MDLSQWKRVVIKVGSALIAPNRKGCSSHYLLSIAQFIVRLRANGVQVVLVSSGSVAAGSHLFPETDKVDIALKKAMAAAGQTEMMATWDRLFDFPTAQILLTHGDLRDRERYVSIRETTFSLLNNGVLPIINENDTVTTDDLKVGDNDNLSAMVAASADADALIICSDVDGLYDKNPNTHDDAVLLPEVTTIDSRIFAMGGGATSAVGTGGMKTKIEAAEKATSHGIDTFIVNGFKATTFNTLLEGKNPGTHFRPYAKPMQEDVHWMTHTASEQGEVVVDNDFDTTFAAEGEQLTSDEIVEVNGNFSVGDTILLRKDDGTRIAKARSNYSSCLLSFIADQDDREFADEFQNKTGPIISKKNIAVLEKQ
>NC_015497.1|WP_013754928.1|4756176_4757418_-|glutamate-5-semialdehyde-dehydrogenase
MIKELAQNAAKAAKVLAVLDEKTKNQVLQDMADALRTNAEVIYAANKMDLAQAEKDGLGAAMIDRLTLNEERVESMAAGIETIVSLPDPAGLERVVGERPNGLKISKMRIPLGVVCMIYEARPNVTADAGALCFKSGNGVILRGGKEALGSSKAIAAVLQDVLQKHNLPIELITVVPDPDRELMMELMQQDEYIDVIIPRGGEGLIRHVTDNSKIPVIQHFKGVCHLYIDKDADLQTAIDLLVNGKTHRTGVCNALEGLIVHKDIADSFLPLAAAALQSKQVKINASAKAAGYFENPTVIEDDAFGEEYLDLEIAVGIVDDLDAAFEHISRFGSHHTEVICTKNELTAKRFQRTVDASVVMVNASSRFSDGSELGLGAEIGIATTKLHAYGPMGLESLTAEKYLVSGTGQVRA
>NC_015497.1|WP_013754927.1|4754549_4755965_-|Na+/H+-antiporter-NhaA
MNPLKDRDRELAPLERKFNHFIFSFEQFFKSQATASITLLLAAMAAMFIANSQWHEIYRDISHMAFSISLGDFAISYSLHTWVNDGLMVLFFFLLGLEIKYECLVGDLKDFRDSSLVIAMAVGGMLIPACIYAGIAMTGTDVAMRGWGIPMATDTAFALGILALLGSKAPRSAAVTLSALAIVDDMGAVAVIGLFYTENIHLVSLGYAGLTLLGLMLMNLLGFRRPIFYMLGGILLWWFVLQSGVHATAAGILAALAVPTRPYAQSSWFSRNMRSVLNRFEKNDREDKSILEQQEQHELVEQAQDIAAMTTTPIQRWGHVLNRPVSLMILPIFAFINAGVALPSELDKIFESVVFVAVGSGLVLGKVIGISLFAWFAVKCNFARLPKGLNFHHIIALASLAGVGFTMSLFIASLGFANYPQLLAQAKLGILAGSVIAAIIGTGLFLLVKKEEEEPKEQLHNKAGLPQTDPE
>NC_015497.1|WP_007985628.1|4753236_4754424_-|MFS-transporter
MSKKRQFSVFIRLVVISTMTKLADILISAKTTLPWIMTSMGAPSWMISLLVPIRESGSLIPQLPLKRRIQHFVRRERVWRLGVLVQALAILAMVPSVALLGSFGAGLSMLILLLILSLGRAICSLTMKDMEGVLIEKGRRGKLVGIASGLSGLLSLISAGVLILGKSQFEQAWLLIIIASASVLFLATLPLSLALRARVTSDQKHPSQSFLTTLRSDKALMHLIISRCLLLHSALIAPFFVSITTGQDGSFHLPYFIAASALAAFLSSYVWGSWSDKSAVLTIRIASAICVLASSAFYCFFDIGSLWLNVGLFFLLSVGYAGVRTARKTYLLDIASGDTRTEYVATANTIVGYVLLAFGGVYAVIYPMIDHHIIALMSVFLLLGLGQSYWLKKEK
>NC_015497.1|WP_007985626.1|4752045_4753212_+|mechanosensitive-ion-channel-family-protein
MQTHTRVSQISVSLLFTAICYAIFMPIAYAQAQAQEAPARDAISTQPLDVWADVINLWQQFVLALPMLSLGLVFFVLCYLLAKPVSTLLVRPIGYLSQSQLIKLVTRRTISLLIILLGLYVFLRFAGLSEFAIAIVSGTGVMGLILGFAFRDIAENFISSLLLSVQKPFKIDDVIEVQGQLGIVKQVTARATTLVDFDGNHIQIPNATIYKNIIRNLTANPKMRGKFIIGIGYDSSILDAQQLATKVLAAQPTILQDPEPQVLVDTLGSSTVNLQVYFWIDAQQYSLLKVSSMLMRLIMREFEKNNISMPDDAREIIFPQGVPVHQLAEAEGPKAVQLESSTVNKPLSPAIEHDMQDSEHVDDLSSDTHDIRQQAKQARDPEQGQNIL
>NC_015497.1|WP_041248267.1|4766451_4768434_-|response-regulator
MSQSVSRLLLVEDDEDDYILARDYIEQLSTLAFEIDWVTNQQDALAKMAENRHDICLLDYQLGAENGLTVLKRGIEAGFTSPIIMLTGQADEEVDMAALDAGAVDYIIKSELSSSRFARAIRYALARREIEKERVDRLKAEAENRSKDRFLAHLSHELRTPLTSILGYTELLMDSKVGQSAQSELSIVLNNSKHLLSLLNNMLDLSKIAADKLELNLSEVNLDAMIADVYALMTIPATDKGLTLTVSSATPLPLKITTDATRFRQVLINLISNAIKFTEKGSVDVSLWSEKRNKTDYLYFTVADTGIGIPKNQIGCIFKPFEQVADVVSRNQGGSGLGLAICNELVSKMGGDVSLTSEFGKGSCFTAYIETGDVSQVPYEVLKFDSKPLMAKEVNNQSYQGKVLVVDDVNDIRMLVGHMLSGMGLHVEYGKNGLEALDKINDARNESAPYDLVLIDIHMPVMDGSEAIKHIRSNGIDTPIVAMTAATMKGVRDQLIYQGFTNVIEKPINPESLMVVLGTYLQPGTAEKRLSPDDNQIELSSTTEPSEQHILLVEDDADAADITALLLENLGVDVHIAHSGEECLAVFSQRNDWSKVLMDLNLPDANGLKLAKELRKNAPQLEMVLLSGEEPDSAEMADADISKFILKPINKQVLTDLVKG
>NC_015497.1|WP_013754933.1|4768450_4768909_-|response-regulator
MPYSKAKPIIILMADDDEDDRLLAQDALRESRVLNELHCVEDGVELLEYLRKEGKYSEPDAAPRPGLILLDLNMPRMDGREALEQIKLDPELRSIPIVILTTSAQEEDMVKGYDLGAASYITKPVTFEGLVALMSALGKYWVEFVELPTSSN
>NC_015497.1|WP_013754934.1|4768910_4770392_-|histidine-kinase
MQVKRLFGNTTATWIIISIIVVGIIGINLSIALNTVNRLSSVQSSLDKTSNIIVRLESLHLSVVVAESGQRGYMLTEYEEYLNPYHAELQNLDEKIALVKDIESEIPGQAKRIAKLLVQVDAKLNELTSTVDLALEEREKMALRQIMTNRGRDLYREIRKSMQLLIDNEYRHRQELYAQLKQIQRDAKVNFGISAITSGLLVIGMFLMARINLTISNRYQDDLEEQNELLQEKVILRTQELTVYSEELSRSNRELEDFAFVASHDLQEPLRKIQAFSDRLTTIYKDKLDERGVDYIKRMTSAAFRMSTLINDLLEFSRITTRGKDFVEVELDSVLDEVLGDLEIAISESGAQIDIEPLPKVCADPSQMYQLFLNVLSNGLKFRKADVPPKITITVEDKILHDELQHIDVPSCIITIKDNGIGFEQTYADKIFSPFQRLHGRTAYKGTGIGLAVCRRIVERHGGAISALSAPNEGAQFTVSLPIDAVVNKYMGE
>NC_015497.1|WP_013754935.1|4770474_4770708_-|hypothetical-protein
MQPTQETPPVTTNTLIHDVRNPLNRISMQAEMVKLVLENDMPKEKAIAALDKILIACQDSSAALQKLSEHSRTNNDG
>NC_015497.1|WP_013754936.1|4770711_4772043_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MSQILLVDDDKEFTEVASNIIEFLGHDVEIANCLEEAYNCIEFQRFDHILLDFMLPDGSALHLIDKLNTQDKVPFVTLITGHPSVKSIISGMCGPNVNYLVKPLQREDLELVLSGKTKATKKAKSSAITKHFGCLVGESAPMQELYEMIERVGKTNANVMLMGESGVGKEVVAHAIHTASNTEGPMVATNCGALSRELIGSELFGHEKGSFTGAVGRKIGVFEQAQQGTLFLDEITEMPLEMQPNLLRVLESKRVTRVGAVKDIPVDCRVISATNRTVDDIAQSKVLREDIYFRLAVFPITIPPLRERLADIPLLATAFIEQLNAENDTNFEWKNAQLDQLKSYAWPGNIRELRHAIHRAFIMSDPAGTEVTLPKNFESPFAKNQTSTNQVTAGQTIDDVEKELIRVTLEKVEGNKTLAAEMLGISTKTLYNRLNAWENQAQG
>NC_015497.1|WP_013754937.1|4772465_4773656_-|GNAT-family-N-acetyltransferase
MSLGHKLQQEQPALSDATSMNTAQFSSVKSVSVRNAHVDDITQLVALENASFESDRLSQRRFMHWLKATNSHRVFMVATEGANVLGYGLVIMRKGTRLARLYSIAVSSTAQGMGVGKKLLLALEQKTLEQDKLFMRLEVATNNTGAIKLYESLGYRTFGTYANYYQGSIDALRMQKPIRQSLSLQTLPEYPWYQQTTEFTCGPSSLMMAMANLKGELDMSQSLELDIWRQATTIFMTSGHGGCHPIGLALAAHHLGFEVTAYVNTKAPLFIDGVRSEHKKHIMQAVDRQFLQQAQASGINIIYTDPDLKALQSGLQNGAAVISLISTYQLDGKKIPHWVTVTHIDEDCLYLHDPDPDDLHPQPMDCQHIPIAREDFFSMSAFGKSKLRTALLIYKK
>NC_015497.1|WP_008305381.1|4773657_4775124_-|RimK-family-protein
MFKTIIVVDNAEGFPVLDATVIDFAQYLADYPKVGEPKTRIINLCDTDKYLSQGYYCSLLAEARQHKVLPSVNTINDLSESLTDQSQVLTPVPKYMGTDLYAHIDDDVPEEILLFFGWSQNERHKRIAKHVFERFPAPILRLTFSRDDKGLSVQPKALGIREIDSSLWPLFAERLEHFTQKYWRSRSQKKRFRWDMAILVNPEEKTAPSDSKAIQNFVKAAEQVGISAEVITAKQGPMISQFDALFIRETTAINHHTYQLARKGEQEGLEVIDDATSILRCCNKVFLHDAFSYNKVPSPKSRFVSNASDQTCELLEAEFDYPMVLKLPESSFSIGVCKVDNLVELKLKLVEMLRQSALVLVQEFVYTDFDWRIGVLNGRAIYACRYFMARNHWQIYNHSSKKHFSGDFETLPTFEVPKPVLDAAIKASAIVGKGLYGVDIKQVNNQVYVIEVNDNPSLESKVEDLYLGKELYMLVMQEFANRLELRGK
>NC_015497.1|WP_013754938.1|4775401_4777072_-|serine-hydrolase
MTLIGRNKNNSVISVLCLCVLMWATMWATTSGAQVKSVSHDKSQDTLLSEEKVDRQIHNIMDSLNIPGVAVGVIKDGRIVLEKSYGVKDIRSNEPLSSQSLFKIASNTKAFTAAALAILVDEGKLSWDDPVVKHLPDFQLHDPWISAHFTITDLLTHRSGLGLGAGDLMLWPEPSSFSRAEVVHNLRYLKPTGQFRADYAYDNLLYIVAGEVVAAASGQPWEQFVEKRIFAPLGMQHCYAGHIPKKERAFAATPHGMENGKLATIERDVDTSKPNVSGAAGGIQCSLEDMLTWAQVQLNKGNAANTKPLFSSKQHQEMWSAKTIMPVSGTDKRYNNSHFSAYGLGWRLNDVDGKLRVHHSGSLAGMYSYVTFFPELDLGIVVLTNQQSSAARSAIMYTLMKPYLGDEETDWLSVFAPTTSPTNSKMTKSKASTSEAPINLASTTSVQAVPVTNRLLKTALGLYRDNWLGDFYIEENNGRIQLRSTRVIKLVGGVYADEQADRYLVRWDDRSLEADVYIKLHRDKNKAISHIELIPVHADIDFSYDFQDLNLHKVDA
>NC_015497.1|WP_013754939.1|4777132_4779589_-|penicillin-binding-protein-PBP4B
MKKLIASWQRSVLISILTVGIVSCATMPISDMPSKNFGHRVKFLVMHFTAIDYQKSVHALVDEGGLSAHYLIPESNDPSYPNDSLEILKLVDEDKRAWHAGNSVWQGRSELNDSSIGIEIVNVPECHFDSEAQTTSEHGENRLCVFPDYDPKQIELLIALSKDILARNPDISPTRVVGHADIAPARKNDPGPRFPWFELYQAGIGAWYDNDTFEQYWQRFNQYQPNIGLVQSALRAYGYNVLETGIRDEQTRNAISAFQMHFLPWQVTGKADSKTAAAIFALLDKYFNKKAKTLMARYREEQVPQTKENKVVKHGQVDEVFPMQQRSTRQLVNDRKRFKAYQGRGQIQLTSQGAAQADIYVNGQKLNITQPFEADKHYQYSLKRRTRDGMNTLRVDNILPQGSELKVTIPSPVLVDNSASYQNRFKQVDDLIEQDVKNGFPGAVLLVMQNGEIIKRSAYGDARKYADGGELLPSPQKMRTDTLFDIASNTKMFATNLALMKLVSEGKLDVNAPIEQYMPDYQGGGRDTRLVRDLLTHTAGYAPQVRFFTPDNGVGKSLYSQNPQRTDQLLLNRVPFAMGRNVKAVYSDTDYMLLGMLVERLTGMGLDAYVEHQIYQPLGLTNTLFNPLLKGRAKAEFAATEIQGNSRGGRVSFDNMREYVLQGEVHDEKAFYSLGGVAGHAGLFSTVDDLAVLGQLLLNGGGYGQSQIFDEAVLQQFIKPEERDDSYGLGWRRAGHGQSKWHFGPYASAQAYGHTGWTGTVSVIDPKYDLAIFLLTNARHSKVQEDDSGHVEFAGKTFETGKYGSVISLVYEAVLNGK
>NC_015497.1|WP_013754940.1|4780037_4783115_+|carboxypeptidase-regulatory-like-domain-containing-protein
MSRRPQIKKHKQQIGEHMATQSRNFIQQRIYSAMQGAWNNRATTLSAVLLASSLAGAPAALAQQAGGIKGKVETQAADIAVSDVTVTASSNVMPKPRTVKTKADGSYVLPALKPGRYTLTFTSSDGTVRQTQVDVLLDQTSNVDVAFEAAPVDSTEVIQIVGSRISREGDSSLTNSLGEDVISRVPTGQDYRSLLAIIPGVQYSENATLGPSAGGSGRDNKYGFDGVDVSLPMYGNLASEPSTQDVAYVSIDRGGAKAIGFNRAGGLSINTLSKSGTNEFHASVEYRIEPASLSADRDTTESTTSTFEEDKTWMSANVSGALIEDELYFYGSYFGPEITRDNKETAYGPTKEYESDRDEYFGKLTWAPTEDLLFNVSYRTSDKEVVGDSVDSKAADSTSEGSSVSQDIFTIDGSYIIDDYTTLTFQYSDFKNENSSRPDTIYSSVTPTIGGSLDLNNLDQQGLFFVPTIRTDEGFDAQTAQVLIDTYGYLDDAGVITGGGNIGGASLINNQDFSRKSFEVALDHEMELGNTVHNIHIGGQWKESEEVLTRLSNGWGAISYNGGLGVDTNFETDEAIYYSATVYSNSLNGEENLNPLTSTSEVINIEVNDTIEHGDFTYNVGFLFSNDTLYGQGLRENSANASGYEVAPGNKYKMYELDFMDMIQPRLGITWAYNGRDTVFANFASYNPDTTSLARAASWDRNNQSTQVVYFDADGAFIGNTEANGSSGKLFQDDMDARRTDEITIGMTKYISNEFFVRTHLRQRKAFHAWEDQPNNARTYGDYGPFGGVPENLRDKGLFIPDLAEQYASMGLSASDGSYVIAELDGAENTYYEWSIEGDYTGDNYYLNVSYVWSHYYGNYDQDITSTASDGNLFVGSSNLGDGRGRMLWDGKSGTLNGDRPHVLKALGYYTTDWNADIGFNFVFQSGDVWEAWDGGAYGYSSSTIRYSEPAGSRRESSHWQLDLNYAQAFNLTEDLELQFKADVFNVFDRQTGYNYQPIVSSASFGEARDLINPRRVQLSVSLNY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	MN694366	Marine virus AFVG_250M1050, complete genome	26844-26872	5	0.828
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	DQ530360	Staphylococcus aureus phage phiNM2, complete genome	25227-25255	6	0.793
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	MK801682	Staphylococcus phage SAP33, complete genome	30497-30525	6	0.793
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	MK801683	Staphylococcus phage SAP40, complete genome	28770-28798	6	0.793
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	FN667788	Campylobacter phage CP220, complete genome	83761-83789	6	0.793
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	EU861004	Staphylococcus phage phiSauS-IPLA88, complete genome	23792-23820	6	0.793
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	DQ517338	Staphylococcus phage 80alpha, complete sequence	24999-25027	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	AF424781	Staphylococcus aureus phage phi 11, complete genome	25118-25146	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_008798	Staphylococcus phage phiETA2, complete genome	24813-24841	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	AY954953	Bacteriophage 85, complete genome	8855-8883	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	MK658834	Staphylococcus virus Baq_Sau1, partial genome	7790-7818	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	MT932329	Campylobacter phage F379, complete genome	75780-75808	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	AY954952	Bacteriophage 53, complete genome	8748-8776	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_004615	Staphylococcus phage 11, complete genome	25118-25146	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_007048	Staphylococcus phage 69, complete genome	8692-8720	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_014460	Staphylococcus phage SAP-26, complete genome	6273-6301	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_007050	Staphylococcus phage 85, complete genome	8855-8883	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	AP008953	Staphylococcus phage phiETA2 DNA, complete genome, strain: TY94	24813-24841	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_029010	Staphylococcus phage SA97, complete genome	12805-12833	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_007049	Staphylococcus phage 53, complete genome	8748-8776	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	AB370205	Staphylococcus phage phiMR25 DNA, complete genome	25442-25470	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	JX274647	Staphylococcus phage SP6, complete genome	24550-24578	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	KM389214	UNVERIFIED: Staphylococcus phage Phi05_1554 UV clone contig00001 genomic sequence	20128-20156	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	KC677663	Staphylococcus phage SA12, complete genome	19588-19616	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	MH321492	Staphylococcusphage Lorac, complete genome	8646-8674	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_027989	Campylobacter phage vB_CcoM-IBB_35 clone Contig1, complete genome	38214-38242	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_008583	Staphylococcus aureus phage phiNM1, complete genome	25230-25258	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	MT013111	Staphylococcus phage SA75, complete genome	8686-8714	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	JX274646	Staphylococcus phage SP5, complete genome	25514-25542	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	AY954951	Bacteriophage 69, complete genome	8692-8720	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	HQ127381	Staphylococcus phage TEM126, complete sequence	13269-13297	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_009526	Staphylococcus phage 80alpha, complete genome	24999-25027	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_017968	Staphylococcus phage TEM123, complete genome	28265-28293	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	KM389348	UNVERIFIED: Staphylococcus phage Phi06_3244 B clone contig00001 genomic sequence	3337-3365	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_010808	Staphylococcus phage phiMR25, complete genome	25442-25470	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	MG557619	Staphylococcus phage HSA84, complete genome	8616-8644	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_012439	Persephonella marina EX-H1 plasmid, complete sequence	42452-42480	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NZ_CP019739	Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence	26195-26223	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NC_049966	Bacillus phage vB_BthP-Goe4, complete genome	4433-4461	7	0.759
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	NZ_LR134428	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19	19778-19806	8	0.724
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	CP031730	Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence	67042-67070	8	0.724
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	KX160207	Lactococcus phage 53801, complete genome	35276-35304	8	0.724
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	KX456208	Lactococcus phage 50901, complete genome	32211-32239	8	0.724
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	KX456206	Lactococcus phage 28201, complete genome	33167-33195	8	0.724
NC_015497_1	1.1\|1793521\|29\|NC_015497\|CRISPRCasFinder	1793521-1793549	29	MT774384	CrAssphage cr8_1, complete genome	85615-85643	9	0.69

1. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to MN694366 (Marine virus AFVG_250M1050, complete genome) position: , mismatch: 5, identity: 0.828

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaaattaaaaccaaattttaacacaag	Protospacer
 **** *********** ******* .**

2. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to DQ530360 (Staphylococcus aureus phage phiNM2, complete genome) position: , mismatch: 6, identity: 0.793

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaactctaa	Protospacer
 *****************.*****   *.

3. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to MK801682 (Staphylococcus phage SAP33, complete genome) position: , mismatch: 6, identity: 0.793

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaactctaa	Protospacer
 *****************.*****   *.

4. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to MK801683 (Staphylococcus phage SAP40, complete genome) position: , mismatch: 6, identity: 0.793

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaactctaa	Protospacer
 *****************.*****   *.

5. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to FN667788 (Campylobacter phage CP220, complete genome) position: , mismatch: 6, identity: 0.793

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
taaaatttaaaactaaaatttaaaacaaa	Protospacer
.************.********* * .*.

6. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to EU861004 (Staphylococcus phage phiSauS-IPLA88, complete genome) position: , mismatch: 6, identity: 0.793

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaagcttaactctag	Protospacer
 ****************..*****   **

7. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to DQ517338 (Staphylococcus phage 80alpha, complete sequence) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

8. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to AF424781 (Staphylococcus aureus phage phi 11, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

9. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_008798 (Staphylococcus phage phiETA2, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

10. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to AY954953 (Bacteriophage 85, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

11. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to MK658834 (Staphylococcus virus Baq_Sau1, partial genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

12. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
taaaatttaaaactaaaatttaaaacaca	Protospacer
.************.********* * . .

13. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to AY954952 (Bacteriophage 53, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

14. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_004615 (Staphylococcus phage 11, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

15. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_007048 (Staphylococcus phage 69, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

16. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_014460 (Staphylococcus phage SAP-26, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

17. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_007050 (Staphylococcus phage 85, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

18. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to AP008953 (Staphylococcus phage phiETA2 DNA, complete genome, strain: TY94) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

19. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_029010 (Staphylococcus phage SA97, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

20. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_007049 (Staphylococcus phage 53, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

21. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to AB370205 (Staphylococcus phage phiMR25 DNA, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

22. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to JX274647 (Staphylococcus phage SP6, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

23. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to KM389214 (UNVERIFIED: Staphylococcus phage Phi05_1554 UV clone contig00001 genomic sequence) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

24. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to KC677663 (Staphylococcus phage SA12, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

25. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to MH321492 (Staphylococcusphage Lorac, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

26. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_027989 (Campylobacter phage vB_CcoM-IBB_35 clone Contig1, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
taaaatttaaaactaaaatttaaaacaca	Protospacer
.************.********* * . .

27. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_008583 (Staphylococcus aureus phage phiNM1, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

28. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to MT013111 (Staphylococcus phage SA75, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

29. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to JX274646 (Staphylococcus phage SP5, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

30. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to AY954951 (Bacteriophage 69, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

31. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to HQ127381 (Staphylococcus phage TEM126, complete sequence) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

32. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_009526 (Staphylococcus phage 80alpha, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

33. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_017968 (Staphylococcus phage TEM123, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

34. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to KM389348 (UNVERIFIED: Staphylococcus phage Phi06_3244 B clone contig00001 genomic sequence) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

35. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_010808 (Staphylococcus phage phiMR25, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

36. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to MG557619 (Staphylococcus phage HSA84, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
aaaaatttaaaaccaaaacttaattctaa	Protospacer
 *****************.****.   *.

37. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_012439 (Persephonella marina EX-H1 plasmid, complete sequence) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
caaaaataaaaaccaaaatttaagtgcca	Protospacer
***** * ***************  *  .

38. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NZ_CP019739 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-5, complete sequence) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
caaaatttaaaagcaaaatttgctgggcc	Protospacer
************ ********. ..**

39. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NC_049966 (Bacillus phage vB_BthP-Goe4, complete genome) position: , mismatch: 7, identity: 0.759

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
ataaatttaaaaccaaaattaaagttggg	Protospacer
  ****************** **   *.*

40. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to NZ_LR134428 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19) position: , mismatch: 8, identity: 0.724

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
atttttttaaaactataatttaacaggaa	Protospacer
     ********.* ************.

41. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
agaaatttaaaaacaaaatttaatcctat	Protospacer
 .********** **********.   *

42. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to KX160207 (Lactococcus phage 53801, complete genome) position: , mismatch: 8, identity: 0.724

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
tgcaattttaaaccaaattttaacagcgt	Protospacer
.. ***** ******** ******** .

43. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to KX456208 (Lactococcus phage 50901, complete genome) position: , mismatch: 8, identity: 0.724

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
tgcaattttaaaccaaattttaacagcgt	Protospacer
.. ***** ******** ******** .

44. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to KX456206 (Lactococcus phage 28201, complete genome) position: , mismatch: 8, identity: 0.724

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
tgcaattttaaaccaaattttaacagcgt	Protospacer
.. ***** ******** ******** .

45. spacer 1.1|1793521|29|NC_015497|CRISPRCasFinder matches to MT774384 (CrAssphage cr8_1, complete genome) position: , mismatch: 9, identity: 0.69

caaaatttaaaaccaaaatttaacaggag	CRISPR spacer
tcaaatttaaaaccataatttaatctttt	Protospacer
. ************* *******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2941850 : 2950406

uncultured_Caudovirales_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006991166.1\|2941850_2942519_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.4e-42	47.0
WP_013753999.1\|2942594_2942984_+	sulfurtransferase complex subunit TusD	NA	NA	NA	NA
WP_013754000.1\|2942980_2943343_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_013754001.1\|2943343_2943658_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_013754002.1\|2943754_2944093_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	2.3e-23	51.5
WP_007986530.1\|2944185_2945484_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.6e-95	44.1
WP_013754003.1\|2945494_2945878_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.3e-10	35.8
WP_007986532.1\|2945878_2947216_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.7e-85	39.8
WP_013754004.1\|2947215_2947878_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_007986534.1\|2947880_2950406_-	DNA translocase FtsK	G1FGP1	Mycobacterium_phage	6.4e-86	49.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015498

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_015498_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015498_1

1028-1130

Orphan

Consensus_repeat	Method
ATCGCGGCAAACGACACTTAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015498_1

>merge|NC_015498|1|1028-1130|CRISPRCasFinder
ATCGCGGCGAACGACACTTAATTCTGATATTTTTATAACTAATTGTTTATTATAATATTTATTTGCATCGCGCTAATTTATCGCGGCGAACGACACTTAGCTA

>NC_015498|1|1|1028-1130|CRISPRCasFinder
ATCGCGGCGAACGACACTTAATT	CTGATATTTTTATAACTAATTGTTTATTATAATATTTATTTGCATCGCGCTAATTT
ATCGCGGCGAACGACACTTAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015498.1\|WP_148258884.1\|2019_3252_+\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755078.1\|6493_7081_-\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755080.1\|9112_9556_+\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755079.1\|7253_9008_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235877
NC_015498.1\|WP_013755081.1\|9630_9867_+\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755075.1\|4522_4834_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182225
NC_015498.1\|WP_148258878.1\|4967_5504_+\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755074.1\|3319_4420_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|368316
NC_015498.1\|WP_013755082.1\|10012_10453_-\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755077.1\|5683_6403_+\|hypothetical-protein	unknown	unknown	unknown

>NC_015498.1|WP_148258884.1|2019_3252_+|hypothetical-protein
MDFGYFAKPLEQLGSMDILATYFNDCIRASNGITAKLIKKEKKVRNPETGKIGTLFIQTTTSTAEDAEIMLGDDMVLLNYFYSSINERLISNLTDLTAPFQNLFRFDKRSILIDLGLTDSGGNRDTLDASVSRVVNTLFSLESDSEGLWLMQKLGLVDGNGHPYSKAPVRLIEEVGQTDDAEAVELDELIKSRTSLRYFDIALPSFLERQINRSIQMWHESIAANTHQNLPTLKMFSRDKTLLLGQEKGLIWLINDHLSAKLARPGFSIGPVSLEAFLTAFSSSIITKTDVMTVKKLMFTSLHSQSFMLYCDEWHVNKRRQPRFMKLIAMLNHKFLLEIENVTPGYTLTTRISNLRYQFRVIRLTEAEIEECKERSALIQKNIEYAEDEVFVPFANAIFARAQATASKYR
>NC_015498.1|WP_013755074.1|3319_4420_+|SAM-dependent-methyltransferase
MQLHQILTDHISFVSDRKLVLTSELQRKDFTRLKALLLRLGAQWDNKQSEFIFTRHAPSLVQRIIDLGSSNVNKFHLYPSTPKVFDFMKEFTPICYLGASGQRKLRVLEPSIGLCYLATALKDFLLQEGRDCILDGYDIDPLNVELSLQKGFNVQERDFLTVEPEPIYDLVLMNPPFDGSAFVDHVRHASRFLTPTGVLVSVIPVNMPRLLKDDVRHRWLMDRIRLYCPEQLEEGNFLDKDTFKNVSIDTTVITLNSESAYQKDLASARTLEAQLCSISLSIDNNPKELSLLSERNTQVFSAKTIDMFLSGFLDTKLNEELNLHPAFVEQFKQFIQYEYLPLTKRIPKHSLCLDNLLFGASLMKAA
>NC_015498.1|WP_013755075.1|4522_4834_+|hypothetical-protein
MNAKSITDHYESAGSKLIRLLKINNETKASNTLKDVKNLSSKLKYSSYGLLAMGIFLILVGIGFGGLLTVAVGAYSFGFSTYGIPQMKKILQEKLNEMTQSVA
>NC_015498.1|WP_148258878.1|4967_5504_+|hypothetical-protein
MTEKNNITLACIELEFKSSLKHCAQLIPLTRWHSIPEKTGLHTHVSKYGLAVARTGEILFHKAFLATESRNQLRATMRHELTHFCVGLEHNHDKVFKRVCNWFSDDVQVPQSEIDAITGHIKFKWQIKAHMAGGETVELGGVHRKTKIYTHYPCPKKGAFMSIKGVRVERFEFIEAGS
>NC_015498.1|WP_013755077.1|5683_6403_+|hypothetical-protein
MTNQFIAKANGNAFKLHSALQVILKDYAGISDARGLNNLAQLFPDLYTLVQAVGGEIYLQTEVYLLASMSLPFSGSQKELERQLGRLEYACALIKHSKPLHAYRQVHKGFECVLMEMNGKFSVLKVVADEHAAQTFFTEHNQGIDIALLANGIETEQKKEAVPVQSYSERISKIKALPDIEHQTRQAKATVQRLKLQLKEQNSMAAKQLYVNAVKEAEATLKKLHENRFDLEDMFEHMM
>NC_015498.1|WP_013755078.1|6493_7081_-|hypothetical-protein
MLTEKLNTIEALKPLPGRGTPPATRRLIHKHNSELYCAALSTYFDGRRCHCYMTTTDFWVYASSLNDASEIKAKARIFGYKNIRTIKVKYSDGEPFITEFAVVVSATSDLIIGEIAQKFFDILKPVFDDFKISALCTHGHYRRYSLTLSSMTEAMALQERIETILSGNDDDSKIKASVQVKRLEMDAFNVHVNFD
>NC_015498.1|WP_013755079.1|7253_9008_+|hypothetical-protein
MQLSKVNRTTETFKNLFLNNWIVTVGLSGKDSACVSHCAVEGLKAAMDVNPMVGPLYLVTTNTTIDNFELHGFILDVHAGAEQYAREFNLPIITKEINPSLSSLPMVEYIGRGKLLRTPATSTNGRDCTIEWKIDPMKRFLRDLKNTHQTNKIASASGTRSLESVSRAANIEKRNESAVGVVETNLGYTIAPIKDWTLTDVWSLLNLIESDEVESYLESNAQGLRKHYSAGNDGTCDLFAGEKLTSDKACGARFGCVLCAMVENDASLESQISTSYETYGYMAPMLRFREFMINTLYDYNYSRSMLGRQLKEGGYVKVGYNQYSIAYRQDLLRFMLTIDAQESEAFYEQYGYDGCRFSMIGYKELLMIQYQWIREGGEKLAGEALRIWHDVHTHGKRYAIPETTYAEPKPLPKYRYYNINGYVKHHACTGLHEDNVNGLMTGRLHRSAKIGNDVDLVPFEEGEKAEIDGESGMAWSFVEHWFPDAVAGGHFDEGKCPTTLLKVMLECKLLKLRKGTLPRLHKEVQRAQVYNALSQTYGDCYQHLCFGASISEEEYKENLKAGVQHQEAVKAQSAFDFDKVEMEL
>NC_015498.1|WP_013755080.1|9112_9556_+|hypothetical-protein
MNLKHGFYSTNPSLNPDMVLLSRARTHCAALNMMMAMLDDERVNVGQLITAYGLNAPIPLPDGVNSLKTWLWWLCSEVDKSFDYESAEAKYANMVALMGSAIAEFNIHSSVRPYSFIVEDPKPNSLDKCQYVMNSLMTKIKKLRAKF
>NC_015498.1|WP_013755081.1|9630_9867_+|hypothetical-protein
MQQLNSNQHTAPRTLNGYIEAQAEQVTLNMQFETAQERTHWIEQHHKEIVDAAFKRFRADASARLRTVLPSSHCSLSM
>NC_015498.1|WP_013755082.1|10012_10453_-|hypothetical-protein
MSNSLFDDNGMYHSDFKGTQRSCYRGMKVRVYRNLNKPQYYSILALEGPDKRKVVGYAKSVKIIDVKFIVSAKSRARVLNEKSRNVHAFCEGFLNDIYSEQIQFTSPKIEVSYNPYFQGYFFKTSDKSEVEPFAKSLVLQHSCGYI

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Click the colored protein region to show detailed information

Crispr_ID: NC_015498_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015498_2

1188-1307

Orphan

Consensus_repeat	Method
ATCGCGGCAAACGACACTTAGCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_015498_2

>merge|NC_015498|2|1188-1307|CRISPRCasFinder
ATCGCGACGAACTACAGTTAGCATCGCGGCAAACGACACTTAGCATCGCGGCGAACTACAGTTAGCATCGCGGCTAACGACACTTAGAGACTGATTTATCGCGGCTAACGACACTTAGCA

>NC_015498|2|2|1188-1307|CRISPRCasFinder
ATCGCGACGAACTACAGTTAGCA	TCGCGGCAAACGACACTTAGC
ATCGCGGCGAACTACAGTTAGCA	TCGCGGCTAACGACACTTAGAGACTGATTT
ATCGCGGCTAACGACACTTAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015498.1\|WP_148258884.1\|2019_3252_+\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755078.1\|6493_7081_-\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755080.1\|9112_9556_+\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755079.1\|7253_9008_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235877
NC_015498.1\|WP_013755081.1\|9630_9867_+\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755075.1\|4522_4834_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182225
NC_015498.1\|WP_148258878.1\|4967_5504_+\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755074.1\|3319_4420_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|368316
NC_015498.1\|WP_013755082.1\|10012_10453_-\|hypothetical-protein	unknown	unknown	unknown
NC_015498.1\|WP_013755077.1\|5683_6403_+\|hypothetical-protein	unknown	unknown	unknown

>NC_015498.1|WP_148258884.1|2019_3252_+|hypothetical-protein
MDFGYFAKPLEQLGSMDILATYFNDCIRASNGITAKLIKKEKKVRNPETGKIGTLFIQTTTSTAEDAEIMLGDDMVLLNYFYSSINERLISNLTDLTAPFQNLFRFDKRSILIDLGLTDSGGNRDTLDASVSRVVNTLFSLESDSEGLWLMQKLGLVDGNGHPYSKAPVRLIEEVGQTDDAEAVELDELIKSRTSLRYFDIALPSFLERQINRSIQMWHESIAANTHQNLPTLKMFSRDKTLLLGQEKGLIWLINDHLSAKLARPGFSIGPVSLEAFLTAFSSSIITKTDVMTVKKLMFTSLHSQSFMLYCDEWHVNKRRQPRFMKLIAMLNHKFLLEIENVTPGYTLTTRISNLRYQFRVIRLTEAEIEECKERSALIQKNIEYAEDEVFVPFANAIFARAQATASKYR
>NC_015498.1|WP_013755074.1|3319_4420_+|SAM-dependent-methyltransferase
MQLHQILTDHISFVSDRKLVLTSELQRKDFTRLKALLLRLGAQWDNKQSEFIFTRHAPSLVQRIIDLGSSNVNKFHLYPSTPKVFDFMKEFTPICYLGASGQRKLRVLEPSIGLCYLATALKDFLLQEGRDCILDGYDIDPLNVELSLQKGFNVQERDFLTVEPEPIYDLVLMNPPFDGSAFVDHVRHASRFLTPTGVLVSVIPVNMPRLLKDDVRHRWLMDRIRLYCPEQLEEGNFLDKDTFKNVSIDTTVITLNSESAYQKDLASARTLEAQLCSISLSIDNNPKELSLLSERNTQVFSAKTIDMFLSGFLDTKLNEELNLHPAFVEQFKQFIQYEYLPLTKRIPKHSLCLDNLLFGASLMKAA
>NC_015498.1|WP_013755075.1|4522_4834_+|hypothetical-protein
MNAKSITDHYESAGSKLIRLLKINNETKASNTLKDVKNLSSKLKYSSYGLLAMGIFLILVGIGFGGLLTVAVGAYSFGFSTYGIPQMKKILQEKLNEMTQSVA
>NC_015498.1|WP_148258878.1|4967_5504_+|hypothetical-protein
MTEKNNITLACIELEFKSSLKHCAQLIPLTRWHSIPEKTGLHTHVSKYGLAVARTGEILFHKAFLATESRNQLRATMRHELTHFCVGLEHNHDKVFKRVCNWFSDDVQVPQSEIDAITGHIKFKWQIKAHMAGGETVELGGVHRKTKIYTHYPCPKKGAFMSIKGVRVERFEFIEAGS
>NC_015498.1|WP_013755077.1|5683_6403_+|hypothetical-protein
MTNQFIAKANGNAFKLHSALQVILKDYAGISDARGLNNLAQLFPDLYTLVQAVGGEIYLQTEVYLLASMSLPFSGSQKELERQLGRLEYACALIKHSKPLHAYRQVHKGFECVLMEMNGKFSVLKVVADEHAAQTFFTEHNQGIDIALLANGIETEQKKEAVPVQSYSERISKIKALPDIEHQTRQAKATVQRLKLQLKEQNSMAAKQLYVNAVKEAEATLKKLHENRFDLEDMFEHMM
>NC_015498.1|WP_013755078.1|6493_7081_-|hypothetical-protein
MLTEKLNTIEALKPLPGRGTPPATRRLIHKHNSELYCAALSTYFDGRRCHCYMTTTDFWVYASSLNDASEIKAKARIFGYKNIRTIKVKYSDGEPFITEFAVVVSATSDLIIGEIAQKFFDILKPVFDDFKISALCTHGHYRRYSLTLSSMTEAMALQERIETILSGNDDDSKIKASVQVKRLEMDAFNVHVNFD
>NC_015498.1|WP_013755079.1|7253_9008_+|hypothetical-protein
MQLSKVNRTTETFKNLFLNNWIVTVGLSGKDSACVSHCAVEGLKAAMDVNPMVGPLYLVTTNTTIDNFELHGFILDVHAGAEQYAREFNLPIITKEINPSLSSLPMVEYIGRGKLLRTPATSTNGRDCTIEWKIDPMKRFLRDLKNTHQTNKIASASGTRSLESVSRAANIEKRNESAVGVVETNLGYTIAPIKDWTLTDVWSLLNLIESDEVESYLESNAQGLRKHYSAGNDGTCDLFAGEKLTSDKACGARFGCVLCAMVENDASLESQISTSYETYGYMAPMLRFREFMINTLYDYNYSRSMLGRQLKEGGYVKVGYNQYSIAYRQDLLRFMLTIDAQESEAFYEQYGYDGCRFSMIGYKELLMIQYQWIREGGEKLAGEALRIWHDVHTHGKRYAIPETTYAEPKPLPKYRYYNINGYVKHHACTGLHEDNVNGLMTGRLHRSAKIGNDVDLVPFEEGEKAEIDGESGMAWSFVEHWFPDAVAGGHFDEGKCPTTLLKVMLECKLLKLRKGTLPRLHKEVQRAQVYNALSQTYGDCYQHLCFGASISEEEYKENLKAGVQHQEAVKAQSAFDFDKVEMEL
>NC_015498.1|WP_013755080.1|9112_9556_+|hypothetical-protein
MNLKHGFYSTNPSLNPDMVLLSRARTHCAALNMMMAMLDDERVNVGQLITAYGLNAPIPLPDGVNSLKTWLWWLCSEVDKSFDYESAEAKYANMVALMGSAIAEFNIHSSVRPYSFIVEDPKPNSLDKCQYVMNSLMTKIKKLRAKF
>NC_015498.1|WP_013755081.1|9630_9867_+|hypothetical-protein
MQQLNSNQHTAPRTLNGYIEAQAEQVTLNMQFETAQERTHWIEQHHKEIVDAAFKRFRADASARLRTVLPSSHCSLSM
>NC_015498.1|WP_013755082.1|10012_10453_-|hypothetical-protein
MSNSLFDDNGMYHSDFKGTQRSCYRGMKVRVYRNLNKPQYYSILALEGPDKRKVVGYAKSVKIIDVKFIVSAKSRARVLNEKSRNVHAFCEGFLNDIYSEQIQFTSPKIEVSYNPYFQGYFFKTSDKSEVEPFAKSLVLQHSCGYI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498.1	136-156	2	0.905
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498.1	200-220	2	0.905
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498.1	264-284	2	0.905
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498.1	328-348	2	0.905
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498.1	392-412	2	0.905
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498.1	456-476	2	0.905
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498.1	520-540	2	0.905
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498.1	584-604	2	0.905
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498.1	648-668	2	0.905

1. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to position: 136-156, mismatch: 2, identity: 0.905

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaactacacttagc	Protospacer
*******.*** *********

2. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to position: 200-220, mismatch: 2, identity: 0.905

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaactacacttagc	Protospacer
*******.*** *********

3. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to position: 264-284, mismatch: 2, identity: 0.905

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaactacacttagc	Protospacer
*******.*** *********

4. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to position: 328-348, mismatch: 2, identity: 0.905

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaactacacttagc	Protospacer
*******.*** *********

5. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to position: 392-412, mismatch: 2, identity: 0.905

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaactacacttagc	Protospacer
*******.*** *********

6. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to position: 456-476, mismatch: 2, identity: 0.905

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaactacacttagc	Protospacer
*******.*** *********

7. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to position: 520-540, mismatch: 2, identity: 0.905

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaactacacttagc	Protospacer
*******.*** *********

8. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to position: 584-604, mismatch: 2, identity: 0.905

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaactacacttagc	Protospacer
*******.*** *********

9. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to position: 648-668, mismatch: 2, identity: 0.905

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaactacacttagc	Protospacer
*******.*** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015498_1	1.1\|1051\|56\|NC_015498\|CRISPRCasFinder	1051-1106	56	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	1051-1106	0	1.0
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	1211-1231	0	1.0
NC_015498_2	2.2\|1255\|30\|NC_015498\|CRISPRCasFinder	1255-1284	30	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	1255-1284	0	1.0
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	1108-1128	1	0.952
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	1286-1306	1	0.952
NC_015498_2	2.1\|1211\|21\|NC_015498\|CRISPRCasFinder	1211-1231	21	NZ_CP013927	Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence	241070-241090	1	0.952

1. spacer 1.1|1051|56|NC_015498|CRISPRCasFinder matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 0, identity: 1.0

ctgatatttttataactaattgtttattataatatttatttgcatcgcgctaattt	CRISPR spacer
ctgatatttttataactaattgtttattataatatttatttgcatcgcgctaattt	Protospacer
********************************************************

2. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcaaacgacacttagc	Protospacer
*********************

3. spacer 2.2|1255|30|NC_015498|CRISPRCasFinder matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcggctaacgacacttagagactgattt	CRISPR spacer
tcgcggctaacgacacttagagactgattt	Protospacer
******************************

4. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 1, identity: 0.952

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcgaacgacacttagc	Protospacer
*******.*************

5. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 1, identity: 0.952

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggctaacgacacttagc	Protospacer
******* *************

6. spacer 2.1|1211|21|NC_015498|CRISPRCasFinder matches to NZ_CP013927 (Alteromonas stellipolaris strain LMG 21861 plasmid pASTE61-200, complete sequence) position: , mismatch: 1, identity: 0.952

tcgcggcaaacgacacttagc	CRISPR spacer
tcgcggcaaacgacagttagc	Protospacer
*************** *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

103190 : 141546

Bacillus_phage(16.67%)

integrase,transposase

attL 124105:124119|attR 145660:145674

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013755162.1\|103190_104162_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_033185561.1\|104599_104836_+	hypothetical protein	NA	NA	NA	NA
WP_160162536.1\|104981_105398_+	hypothetical protein	NA	NA	NA	NA
WP_013755165.1\|106031_106454_+	MaoC domain-containing protein dehydratase	NA	NA	NA	NA
WP_013755167.1\|107005_107263_+	hypothetical protein	NA	NA	NA	NA
WP_013755168.1\|107394_107802_+	GFA family protein	NA	NA	NA	NA
WP_013755169.1\|108599_108809_+	hypothetical protein	NA	NA	NA	NA
WP_013755170.1\|108912_111891_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	1.0e-34	22.1
WP_013755171.1\|112639_113500_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	3.2e-29	34.7
WP_013755173.1\|114371_115154_-	hypothetical protein	NA	NA	NA	NA
WP_013755174.1\|115173_115614_-	hypothetical protein	NA	NA	NA	NA
WP_013755175.1\|115825_117097_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.4e-105	51.7
WP_013755176.1\|117705_118176_+	hypothetical protein	NA	NA	NA	NA
WP_013755177.1\|118190_118997_+	hypothetical protein	NA	NA	NA	NA
WP_148258879.1\|119155_120163_+	hypothetical protein	NA	NA	NA	NA
WP_013755179.1\|121436_121715_-	HU family DNA-binding protein	A3E2K9	Sodalis_phage	2.2e-16	51.1
WP_013755180.1\|121902_124404_+	EAL domain-containing protein	NA	NA	NA	NA
124105:124119	attL	NA	NA	NA	NA
WP_013755181.1\|124424_124640_+	hypothetical protein	NA	NA	NA	NA
WP_013755182.1\|124657_124819_+	hypothetical protein	NA	NA	NA	NA
WP_013755183.1\|125012_125207_-	hypothetical protein	NA	NA	NA	NA
WP_013755184.1\|125374_125995_-	hypothetical protein	NA	NA	NA	NA
WP_013755185.1\|126040_126859_-	hypothetical protein	NA	NA	NA	NA
WP_013755186.1\|127073_127541_+	hypothetical protein	NA	NA	NA	NA
WP_041248288.1\|127559_127802_+	hypothetical protein	NA	NA	NA	NA
WP_041248289.1\|127801_127999_+	hypothetical protein	NA	NA	NA	NA
WP_013755187.1\|128234_130787_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_013755189.1\|131426_131654_-	hypothetical protein	NA	NA	NA	NA
WP_013755190.1\|132533_135521_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.5e-62	23.2
WP_013755191.1\|135635_136202_-	hypothetical protein	NA	NA	NA	NA
WP_013755192.1\|136198_136594_-	hypothetical protein	NA	NA	NA	NA
WP_013755193.1\|136617_137052_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_013755194.1\|137071_137218_-	hypothetical protein	NA	NA	NA	NA
WP_013755195.1\|137229_138903_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	6.6e-39	28.2
WP_013755196.1\|138940_139360_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_083818829.1\|139363_139642_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_013755198.1\|139693_140041_-	mercury transporter	NA	NA	NA	NA
WP_013755199.1\|140134_140521_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_013755200.1\|140523_141546_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
145660:145674	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015497

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015498

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection