CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017375	Helicobacter pylori 83, complete genome	2 crisprs	cas14j,cas2,DEDDh	0	1	0	0

Cas Category Instructions

Results visualization

1. NC_017375

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CRISPR-Cas detection and classification

Crispr_ID: NC_017375_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017375_1

900340-900436

Orphan

Consensus_repeat	Method
TTAAAAATGGGGTTTTTAACTTTATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017375_1

>merge|NC_017375|1|900340-900436|CRISPRCasFinder
TTAAAAATGGGGTTTTTAACTTTATTTTCTTTATTTTTTGGATAAGTCTTACTTGATACTTTTTAATCTTTAAAAATAGGGTTTTTAACTTTATTTT

>NC_017375|1|1|900340-900436|CRISPRCasFinder
TTAAAAATGGGGTTTTTAACTTTATTTT	CTTTATTTTTTGGATAAGTCTTACTTGATACTTTTTAATCT
TTAAAAATAGGGTTTTTAACTTTATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017375.1\|WP_000785743.1\|890941_891289_-\|cag-pathogenicity-island-protein-Cag1	unknown	unknown	unknown
NC_017375.1\|WP_025445786.1\|906800_907193_+\|hypothetical-protein	unknown	unknown	unknown
NC_017375.1\|WP_000461051.1\|895561_896104_-\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NC_017375.1\|WP_000866266.1\|896107_896557_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|129262
NC_017375.1\|WP_001292873.1\|894230_895562_-\|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235364
NC_017375.1\|WP_000886852.1\|901806_903186_-\|glycolate-oxidase-subunit-GlcD	unknown	unknown	gnl\|CDD\|273050
NC_017375.1\|WP_041201483.1\|896619_898683_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|226114
NC_017375.1\|WP_001182007.1\|907288_909610_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|237860
NC_017375.1\|WP_000690559.1\|901019_901784_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|129147
NC_017375.1\|WP_000704247.1\|909622_910747_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|273204
NC_017375.1\|WP_000488768.1\|889267_890713_-\|type-IV-secretion-system-apparatus-protein-Cag3	unknown	unknown	gnl\|CDD\|273066
NC_017375.1\|WP_000836128.1\|910803_911871_-\|phospholipase-A	unknown	unknown	gnl\|CDD\|225385
NC_017375.1\|WP_000261553.1\|898831_900277_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|273198
NC_017375.1\|WP_080006320.1\|893325_894234_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|224081
NC_017375.1\|WP_000120029.1\|904515_905154_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129162
NC_017375.1\|WP_000849517.1\|900575_900692_-\|hypothetical-protein	unknown	unknown	unknown
NC_017375.1\|WP_000471650.1\|891426_892293_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NC_017375.1\|WP_000253326.1\|905153_906365_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_017375.1\|WP_000945131.1\|903187_904495_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373843
NC_017375.1\|WP_000722799.1\|892336_893329_-\|flagellin-deglycosylation-protein	unknown	unknown	gnl\|CDD\|225577

Protein	Function_ID	Function_description	E-value
NC_017375.1\|WP_000690559.1\|901019_901784_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|129147	TIGR00036, 4-hydroxy-tetrahydrodipicolinate_reductase, 4-hydroxy-tetrahydrodipicolinate reductase. [Amino acid biosynthesis, Aspartate family].	3.5098e-115
NC_017375.1\|WP_000461051.1\|895561_896104_-\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	5.27376e-103
NC_017375.1\|WP_000866266.1\|896107_896557_-\|50S-ribosomal-protein-L9	gnl\|CDD\|129262	TIGR00158, 50S_ribosomal_protein_L9, ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.1247e-50
NC_017375.1\|WP_001292873.1\|894230_895562_-\|HslU--HslV-peptidase-ATPase-subunit	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NC_017375.1\|WP_000886852.1\|901806_903186_-\|glycolate-oxidase-subunit-GlcD	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	0
NC_017375.1\|WP_041201483.1\|896619_898683_-\|DUF262-domain-containing-protein	gnl\|CDD\|226114	COG3586, COG3586, Uncharacterized conserved protein [Function unknown].	2.06825e-40
NC_017375.1\|WP_001182007.1\|907288_909610_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|237860	PRK14939, gyrB, DNA gyrase subunit B; Provisional.	0
NC_017375.1\|WP_000704247.1\|909622_910747_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|273204	TIGR00663, DNA_polymerase_III_subunit_beta, DNA polymerase III, beta subunit. All proteins in this family for which functions are known are components of the DNA polymerase III complex (beta subunit). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	4.51139e-128
NC_017375.1\|WP_000488768.1\|889267_890713_-\|type-IV-secretion-system-apparatus-protein-Cag3	gnl\|CDD\|273066	TIGR00414, Serine--tRNA_ligase, seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. [Protein synthesis, tRNA aminoacylation].	0.00788565
NC_017375.1\|WP_000836128.1\|910803_911871_-\|phospholipase-A	gnl\|CDD\|225385	COG2829, PldA, Outer membrane phospholipase A [Cell envelope biogenesis, outer membrane].	4.48572e-143
NC_017375.1\|WP_000261553.1\|898831_900277_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|273198	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation. [Amino acid biosynthesis, Glutamate family].	0
NC_017375.1\|WP_080006320.1\|893325_894234_-\|GTPase-Era	gnl\|CDD\|224081	COG1159, Era, GTPase [General function prediction only].	1.28331e-121
NC_017375.1\|WP_000120029.1\|904515_905154_-\|hypothetical-protein	gnl\|CDD\|129162	TIGR00052, GDP-mannose_pyrophosphatase_NudK, nudix-type nucleoside diphosphatase, YffH/AdpP family. Members of this family include proteins of about 200 amino acids, including the recently characterized nudix hydrolase YffH, shows to be highly active as a GDP-mannose pyrophosphatase. It also includes the C-terminal half of a 361-amino acid protein, TrgB from Rhodobacter sphaeroides, shown experimentally to help confer tellurite resistance. This model also hits a region near the C-terminus of a 1092-amino acid protein of C. elegans. [Unknown function, Enzymes of unknown specificity].	3.72878e-82
NC_017375.1\|WP_000471650.1\|891426_892293_+\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	1.4461e-14
NC_017375.1\|WP_000253326.1\|905153_906365_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.60541e-39
NC_017375.1\|WP_000945131.1\|903187_904495_-\|hypothetical-protein	gnl\|CDD\|373843	pfam15436, PGBA_N, Plasminogen-binding protein pgbA N-terminal. PGBA_N is an N-terminal family of bacterial proteins that bind plasminogen. This activity was identified in In Helicobacter pylori where it is thought to contribute to the virulence of this bacterium. Both PgbA and PgbB are surface-exposed proteins that mediate binding to plasminogen such that it can be converted into plasmin in the presence of a Pg activator.	8.47598e-101
NC_017375.1\|WP_000722799.1\|892336_893329_-\|flagellin-deglycosylation-protein	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	3.58124e-105

>NC_017375.1|WP_000261553.1|898831_900277_+|type-I-glutamate--ammonia-ligase
MVVRTQNSESKIKEFFEFCKENEVEFVDFRFSDIKGTWNHIAYSFGALTHGMFKEGIPFDASSFKGWQGIEHSDMILTPDLVRYFIDPFSADVSVVVFCDVYDVYKNQPYEKCPRSIAKKALQHLKDSGLGDVAYFGAENEFFIFDSIKIKDASNSQYYEVDSEEGEWNRDRSFENGVNFGHRPGKQGGYMPVPPTDTMMDIRTEIVKVLNQVGLETFVVHHEVAQAQGEVGVKFGDLVEAADNVQKLKYVVKMVAHLNGKTATFMPKPLYGDNGSGMHTHVSVWKNNENLFSGETYKGLSELALHFLGGVLRHARGLAAFTNASTNSYKRLIPGYEAPSILTYSANNRSASVRIPYGISKNSARFEFRFPDSSSNPYLAFAAILMAGMDGVKNKIDPGEAMDINLFKLTLDEIREKGIKQMPHTLRRSLEEMLADKQYLKESQVFSEEFIQAYQSLKFNAEVFPWESKPHPFEFITTYSC
>NC_017375.1|WP_041201483.1|896619_898683_-|DUF262-domain-containing-protein
MKADAIPLLKFIEDNQKNQLVIPIYQRVYSWEKEQCKQLWDDIIKVGGDDKMDGHFIGSILYVLDGITHSDNTLLIIDGQQRLTTITLLFIALRNHLSDEVKRKEIEDHYLINSGKDGDKKFRLILSESDKDTLLYLIDKDRRKPSEPSLKIVENFKLFEEWIRKNTDKLETIFKGLEKLMIVEIALEKGKDDPQLIFESMNSKGMELAQTDLIRNYIVMEIEIEKQEGFYNKYWRAIEEEFKQNKKWFDRFVRHYLTIKIRDIPNINKVYVALKDYRQEEGIGIEDLLKDLQKYCGYFCRIVFKKEADKDLNKALGFLVGLEMDVIYPLLLELYSDYSDGVLSKDDFRRSIALIESYICRRAVCRLGTNSLNKVFPSFTKHIQKDEYFKSLKAHFGYLTEKQRFPNNDEFKDRFITIDFYNFQKREYFFERLENFDRKERVYTHEYTIEHIMPQTLTEEWERDLGENFQEIHNKYLHTIGNLTLTGYNQEYSNNSFQQKRDMEKGFKDSPLRLNQGLRDLKSFGEEEIKKRANDLADWALKIWTYPKLDAETLEKYKPKKDKEKKVYDLNSYKFSPHSRELFDILSKGIKALDERITENFNQDYISYKFKTNFVDIVVQTKDLKLYLNVKFNELQDEKNLARDMTNKGHLGNGNIEVKLKTKENIPYCLGLIKQALEKQMGGRNRQ
>NC_017375.1|WP_000866266.1|896107_896557_-|50S-ribosomal-protein-L9
MKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIANKKAKLATNEVINKYKAEVKKKAEKEALEKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLDLDKKDIELKHPIKSTGIYEIEVKLGFGVVGAFKIDVVAE
>NC_017375.1|WP_000461051.1|895561_896104_-|ATP-dependent-protease-subunit-HslV
MFEATTILGYRGEMGGKKFALIGGDGQVTLGNCVVKANATKIRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNLDHIFILSGTGDVLEAEDNKIAAIGSGGNFALSAARALDSFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL
>NC_017375.1|WP_001292873.1|894230_895562_-|HslU--HslV-peptidase-ATPase-subunit
MSELNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKTEIARRIVKIMKLPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPNGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVFHKEHDKVKKTLSVKEAKEALKAEISDTLLDSESIKMEGLKRAESSGVIFIDEIDKIAVSSKEGGRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTEHILFIAAGAFHLAKPSDLIPELQGRFPLRVELESLTEEIMYMILTQTKTSIIKQYQALLKVEGVEIAFEDNAIKELAKLSYNANQKSEDIGARRLHTTIEKVLEDISFETEDYSGQNVTITKELVQSKLEDLVADENLVKYIL
>NC_017375.1|WP_080006320.1|893325_894234_-|GTPase-Era
MMKTKAGFVALIGKPNAGKSTLLNTLLNAHLALVSHKANATRKLMKCIVPFKDKEGYESQIIFLDTPGLHHQEKLLNQCMLSQALKAMGDAELCVFLASVHDNLKGYEEFLSLCQKPHILAVSKIDTSTHKQVLQKLQEYQQYASQFLALVPLSAKKSQNLNALLECISKHLSPSAWLFEKDLMSDEEMCDIYKEIIRESLFDFLSDEIPYESDVVIDKFIEEERIDKVYAHIIVEKESQKKIVIGKNGVNIKRIGTNARLKMQEVGEKKVFLNLQVIAQKSWSKEEKSLQKLGYIYQRNRD
>NC_017375.1|WP_000722799.1|892336_893329_-|flagellin-deglycosylation-protein
MKKILSALLVGFVGLSADDRLLEIMHLYQKQGLEVVGQKLDSYLADKSFWAEELQNKDTDFGYYQNKQFLFVADKSKPSLEFYEIDNNMLKKINSSKALVGSKKGDKTLEGDLATPIGVYRITQKLERLDQYYGVLAFVTNYPNLYDTLKKRTGHGIWVHGMPLNGDRNELNTKGCIAIENPLLSSYDKVLKGEKAFLITYEDKFFPSTKEELSMVLSSLFQWKEAWARGDFERYMRFYNPNFTRYDGMKFNAFKEYKKRVFAKNEKKNIAFSSISVIPYPNSQNKRLFYVVFDQDYKAYQQNKLSYSSNSQKELYVEIDNNQVSIIMEK
>NC_017375.1|WP_000471650.1|891426_892293_+|sel1-repeat-family-protein
MFKDFYRTTFSFLKPLLFLLGLLLPFSLCIADGYISINPTWDEYTQKYKTYYFENGLDNFNKGQYKQAFKDFRKAQEYGIGLGSVYLAKMYLEGKGVKVDYKKAQLYAKNAIKGYGSGMLGGALILGYMQTEGLGMKKDLKQVLNTYRHVVRILSNKGINFHNNFRLPNLAQTIGIAIGLRFIDLSGLSANPKKFGKKFEKLEDFNTYIHANSEVPNAPSLEDIAEISSNIILLKQQMGEILYRIGIAYKEGLGTRKQKSRAKKFLQKSTEFGYEKASSIVCNQTTKL
>NC_017375.1|WP_000785743.1|890941_891289_-|cag-pathogenicity-island-protein-Cag1
MADTINTTEATHETKKPNAFVNFFKNNLADKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNINLVKLVEKLSKKQSKVATTVNNETQKSQATSVTNEPTEAKETKD
>NC_017375.1|WP_000488768.1|889267_890713_-|type-IV-secretion-system-apparatus-protein-Cag3
MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEARQHQQIPDHKKPQYVSVDDTKTQALFDIYDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRNAKFVLKINENLPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPTSDSATQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKYKLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPRTSNPDETMRVVKEKENYNGLLVDKETTIKRSYQGTLISENSYSKKTPLNPNDLRSLEEEIKSYYIKSNGLCYANGISLYVKIKNDPYKEGMLCGYESIQNLLSPLKDKLKYDKQKLQKALLKDSK
>NC_017375.1|WP_000849517.1|900575_900692_-|hypothetical-protein
MKTIRNSVFIGASLLGGCASVETRFDALRVASIKDACL
>NC_017375.1|WP_000690559.1|901019_901784_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKIGVYGASGRIGKLLLEELKRGYKGLELSSVFVRQKCETDFSSFSHAPLVTNDLKAFVRACECVIDFSLPKGVDNLLETLLECPKILVSGTTGLEKETLEKMQQLALKAPLLHAHNMSLGIMMLNQLAFLASLKLKDADIEIVETHHNLKKDAPSGTALSLYETCAKARGYDEKNALTTHREGLRSKESIGIAALRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLKDKAAKKYEINEMFG
>NC_017375.1|WP_000886852.1|901806_903186_-|glycolate-oxidase-subunit-GlcD
MLDQQHLKYFKNLVGGEDFFTDLAHLNAYCYDATKERHLPSGVIFPRNEQEISQILKYCNEHRIIVVPRGAGSGFTGGALSVSGGLILSVEKHLDKILEIDTKNLIARVEPGVINKHFQNEVEKLNLFYPPDPASENQSTLGGNVAENAGGMRAAKYGITKDYVMAMRVVLANGEIIRAGKKTIKDVAGFNVAGLMIASEGCLGVISEITLKLLAKPPLKQSAMGVFNHIEDAMNAVYKTMSSGVTPVAMEFLDNLSIKAVEERFSKGLPKDAGAILITQVDGVVKEQIAWQLNEIEKHFKANGCVGFKIAQNEQEEQDLWFSRRNASQSISVYGKKKLNEDVTVPRASLPSLLQEVAKISQKYGFKIPCFGHTGDGNVHVNIMLEDPNRDLEKGHKAMEEIFQAAISLEGTLSGEHGIGLSKAKFMPLAFNHSEMELFRNIKKALDPNNILNPFKMGL
>NC_017375.1|WP_000945131.1|903187_904495_-|hypothetical-protein
MLRLLIGLLLMSFISLQSASWQEPLRVSIEFVDLPKKIIRFPAHDLQVGEFGFVVTKLSDYEIVNSEVVIIAVENGVATAKFRAFESMKQSHLPTPRMVARKGDLVYFRQFNNQAFLIAPNDELYEQIRATNTDINFISSDLLVTFLNGFDPKIANLRKACNVYSVGVIYIVTTNTLNILSCESFEILEKRELDTSGVTKTSTPFFSRVEGIDAGTLGKLFSGSQSKNYFAYYDALVKKEKRKEVRIKKKEERIDSREIKREIKQEAIKEPKKANQGTQNAPTLEEKNYQKAEHKLDATEERRRLRDEKKKAKATKKAMEFEEREKAHDERDERETEERRKALGMDQGNEKVNAKENDQEIKQEATKEPSNENNATQQGENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERRKALEAGKK
>NC_017375.1|WP_000120029.1|904515_905154_-|hypothetical-protein
MSYFKNTFNQKFLIDDSSVHLEPCSNSNFIELKRMHYNEENTKKTWDIIKSLDSVAVLLYEKESDCFVIVKQFRPAIYARRFHFKRHQDQNIDGYTYELCAGLVDKANKSLEEIACEEALEECGYKISPKNLETIGQFYSATGLSGSLQTLYYAEVCAHLKVSKGGGIDTEKIEVLFLKRSKALDFIMDFQYAKTTGLSLAILWHLKKFKKV
>NC_017375.1|WP_000253326.1|905153_906365_-|M23-family-metallopeptidase
MVSFHKKIILNFIYFLVVAFLSHGVFLKADEMAKKQTLLVGERLVWDKLTLLGFLEKNHIPQKLYYNLSSQDKELSAEIQSNVTYYTLRDENNTLIQALIPISQDLQIHIYKKGEDYFLDFIPIIFTRKEKTLLLSLQTSPYQDIVKATNDPLLANQLMNAYKKSVPFKRLAKNDKIAIVYTRDYRVGQAFGQPTIKIAMISSRSNQYYLFSHSNGRYYDSKAQEVAGFLLETPVKYTRISSPFSYGRFHPVLKVRRPHYGVDYAAKHGSLIHSASDGRVGFIGVKVGYGNVVEIHLNELRLVYAHMSSFAKGLKKGSFVKKGQIIGRVGSTGLSTGPHLHFGVYKNSRPINPLGYIRTAKSKLHGKQREVFLEKAQHSKQKLEELLKTHSFEKNSFYLLEGF
>NC_017375.1|WP_025445786.1|906800_907193_+|hypothetical-protein
MMATTINLKKDNLIKKGFVGFSWTTLFFNFWVPVIRGDARWAIVMFIFLFCYSFVVVATIGGMFADTDIDKIPDDELIGVFLIVSLGSIIINTIFAFTYNKQYTTGLLESGYEPTDEYSRGILRSKGIIA
>NC_017375.1|WP_001182007.1|907288_909610_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITLTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVVEFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPVISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHETGFKMGLSKAILQYIDENIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIHQFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTEIYLKDSVALDHFLIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRSFATEESLHLHAQTPKGLVEFNLDDNLFKEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIKDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV
>NC_017375.1|WP_000704247.1|909622_910747_-|DNA-polymerase-III-subunit-beta
MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQSSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLVIKQNKSSFKLPMFDADEFPEFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTKRLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETHTFFTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSSTIKLTLEKNNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFVLKCNEPSSPFLIQEPLDEKQSHLNAKISTLMMPITL
>NC_017375.1|WP_000836128.1|910803_911871_-|phospholipase-A
MKSILLFMIFVVCQLEGKKFSQDNFKVDYNYYLRKQDLHIIKTQNDLSNAWYLPPQKAPKEHSWVDFAKKYLNMMDYLGTYFLPFYHSFTPIFQWYHPNINPYQRNEFKFQISFRVPVFRHILWTKGTLYLAYTQTNWFQIYNNPQSAPMRMINFMPELIYIYPINFEPFGGKIGKFSEIWIGWQHISNGVGGAQCYQPFNKEGNPENQFPGQPVIVKDYNGQKDVRWGGCRSVSAGQRPVFRLVWEKGGLKIMVAYWPYVPYDQSNPNLIDYMGYGNAKVDYRRGRHYFELQLYDIFTQYWRYDRWHGAFRLGYTYRINPFVGIYVQWFNGYGDGLYEYDVFSNRIGVGIRLNP

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Crispr_ID: NC_017375_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017375_2

970769-970971

Orphan

I-B

Consensus_repeat	Method
TTTCAATCAAGGGACTTATAACTTTA	CRT
TTCAATCAAGGGACTTATAAATT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_017375_2

>merge|NC_017375|2|970769-970971|CRT,CRISPRCasFinder
CTTCAATCAAGGGACTTATAAATTCACTAACAGCGCTAACTTAAACTTCAACAACAGCGCTTTCAATCAAGGGACTTATAACTTTAATAGCGCTCAATCTGTTTTTGAAAACAGCAATTTCAATCAAGGCACTTATAGCTTTACTGACAATATAGGTTTAAACTTTAATAACGATACTTTCAATCAAGGGACTTATAACTTTA

>NC_017375|2|1|970769-970971|CRT
CTTCAATCAAGGGACTTATAAATTCA	CTAACAGCGCTAACTTAAACTTCAACAACAGCGC
TTTCAATCAAGGGACTTATAACTTTA	ATAGCGCTCAATCTGTTTTTGAAAACAGCAA
TTTCAATCAAGGCACTTATAGCTTTA	CTGACAATATAGGTTTAAACTTTAATAACGATAC
TTTCAATCAAGGGACTTATAACTTTA

>NC_017375|2|2|970770-970969|CRISPRCasFinder
TTCAATCAAGGGACTTATAAATT	CACTAACAGCGCTAACTTAAACTTCAACAACAGCGCT
TTCAATCAAGGGACTTATAACTT	TAATAGCGCTCAATCTGTTTTTGAAAACAGCAAT
TTCAATCAAGGCACTTATAGCTT	TACTGACAATATAGGTTTAAACTTTAATAACGATACT
TTCAATCAAGGGACTTATAACTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017375.1\|WP_000812603.1\|957763_959353_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NC_017375.1\|WP_000894552.1\|953347_955378_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NC_017375.1\|WP_001052332.1\|979326_980472_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NC_017375.1\|WP_080006322.1\|980410_981391_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NC_017375.1\|WP_001240249.1\|968078_968771_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NC_017375.1\|WP_001126499.1\|964725_967983_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_017375.1\|WP_000041797.1\|983657_984317_+\|hypothetical-protein	unknown	unknown	unknown
NC_017375.1\|WP_000592502.1\|956188_957742_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NC_017375.1\|WP_080006321.1\|961676_963365_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
NC_017375.1\|WP_001115888.1\|978396_978603_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NC_017375.1\|WP_001099598.1\|978748_979330_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NC_017375.1\|WP_014536547.1\|964294_964726_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376519
NC_017375.1\|WP_014536546.1\|959885_961430_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NC_017375.1\|WP_000688633.1\|968915_969911_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NC_017375.1\|WP_000722455.1\|982857_983661_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_017375.1\|WP_001064309.1\|981949_982861_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NC_017375.1\|WP_000775586.1\|984919_985675_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|223675
NC_017375.1\|WP_080006348.1\|952205_953354_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NC_017375.1\|WP_000236821.1\|984320_984923_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NC_017375.1\|WP_000426987.1\|981391_981934_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173

Protein	Function_ID	Function_description	E-value
NC_017375.1\|WP_000812603.1\|957763_959353_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.24946e-53
NC_017375.1\|WP_000894552.1\|953347_955378_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.57345e-136
NC_017375.1\|WP_001052332.1\|979326_980472_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	6.13322e-140
NC_017375.1\|WP_080006322.1\|980410_981391_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NC_017375.1\|WP_001240249.1\|968078_968771_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	6.346e-52
NC_017375.1\|WP_001126499.1\|964725_967983_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_017375.1\|WP_000236821.1\|984320_984923_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	7.04982e-21
NC_017375.1\|WP_000592502.1\|956188_957742_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.01477e-54
NC_017375.1\|WP_080006321.1\|961676_963365_-\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	5.24658e-24
NC_017375.1\|WP_001115888.1\|978396_978603_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	4.5194e-26
NC_017375.1\|WP_001099598.1\|978748_979330_+\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	4.16127e-98
NC_017375.1\|WP_014536547.1\|964294_964726_-\|hypothetical-protein	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	0.000643363
NC_017375.1\|WP_014536546.1\|959885_961430_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	1.69561e-178
NC_017375.1\|WP_000688633.1\|968915_969911_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	2.43041e-159
NC_017375.1\|WP_000722455.1\|982857_983661_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	3.06261e-125
NC_017375.1\|WP_001064309.1\|981949_982861_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	6.69884e-75
NC_017375.1\|WP_080006348.1\|952205_953354_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	4.06492e-52
NC_017375.1\|WP_000775586.1\|984919_985675_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|223675	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones].	2.45492e-40
NC_017375.1\|WP_000426987.1\|981391_981934_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	3.34135e-105

>NC_017375.1|WP_000688633.1|968915_969911_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERSDNPNLEVVGINDPANWEILAYLLEHDSVHGLLNKETRYSNGKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFIGEYDEKQYPTLVYGVNHSLYQNQAIVSNASCTTNAIAPICAILDKTFGIKEGMLTTIHSYTSDQKLIDLAHPFDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKTLKDPINDSLIEASKGVLKGVLEIDLKERVSSDFISNPSSVIIAPDLTFTLENMVKIMGWYDNEWGYSHRLVDMAQFMYHY
>NC_017375.1|WP_001240249.1|968078_968771_-|Bax-inhibitor-1/YccA-family-protein
MALYDRANSHNAYAENSLLHESELVGFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVLVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NC_017375.1|WP_001126499.1|964725_967983_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYSELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELVKNALDASPINEILIEESLLGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIQNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNFKRLLYIADAFRLGVCVDEVFELCQIDRWFLSQIQKLVKAEESINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARMNLQIAPNFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKKEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPKILDEIERVSAKIALHLGVVGLLNIQFAVHQNSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVGYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNVMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLILALEESSKEDELLALQDYLV
>NC_017375.1|WP_014536547.1|964294_964726_-|hypothetical-protein
MALVYLAQSDTTIGLLSKDREKLNALKNRPKNQSVLIESADFTTLKSLVRAPNAFKNFIRRSAKTTFIYPNSKAVRVVRGRHGDFLKRFKTLYSTSANLTQCAYDKEIASNLADVVVSDERGLFESSSSKIFRLYKDKKVRVR
>NC_017375.1|WP_080006321.1|961676_963365_-|TonB-dependent-receptor
MAKINGYLSERDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGNRFGDPKLKINGYTSIRNVQIDPLFKPNDIAASVPFTPDSKLGEENKCVAQGGIYDALKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLFEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVRGPNDPNINGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAKDIIYVPGYEVSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYTIPRTGLSITWLSRFVTDLSYCSYSPYRNGPTDIDRRPSNCPKMPGIFHVHKPGYGVSSFFVTYKPTYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEISYKF
>NC_017375.1|WP_014536546.1|959885_961430_-|outer-membrane-beta-barrel-protein-HofG
MKQEKYFLTSSLSLLSFLLCPAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSFSLGGAIAAIPYDKTKNDINQANGKIFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLQYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIANEISVTTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRISHANKNALGQVGRANEYSLQFNASYVFTESVFLNFRITYYGARINKGYQVGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NC_017375.1|WP_000812603.1|957763_959353_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNQVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSTTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPILNTNSIHQCGTTNSGSGSASTTAATTSNSPCFQGNLSLYNRMVSSIKTLSQDLKNNIFQGDNNTTSANLSNQLSKLNTASVYLTYMNSFLNANNQAGGIFQNNTNQNYGNGVTAQQIAYVLKQASVTMGPSGNGGAAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNTSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDVGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NC_017375.1|WP_000592502.1|956188_957742_+|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPEKLSDNDVSANALLGGAVGSGTCAAAGTAGGNSLNTQSACTAAGYYWLPSLSNRVLSTIGSQTNYGTNTNFPNMQQQLTYLNAANVFFNAMNKALEAKNGTNGTSGATGSNGQTYPQNAIQYLQDQQTILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQSVYNELSKNPISGSAFNNAANNQLTNQANAVQGRANQLSNALYNAQVTLDKINTLNNQVRSMPYLPQFRAGNSRSTNILNGFYTKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKVNNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NC_017375.1|WP_000894552.1|953347_955378_+|ATP-dependent-helicase
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKNVLTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSHKNPEHTPYAAFYENILDEFENTKKKHNYIDYNDLLLLFKQAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGHFNKPALLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALIFNPKDIMAAIHVLSHISDIGSNTAKDIHEALMLLGNGDLKSALIQPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFTLYTKAPTHSPSALIKYILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQVQKRFNEKMDLLSSLAKNYQNLGRFLNSTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDLK
>NC_017375.1|WP_080006348.1|952205_953354_+|class-I-SAM-dependent-methyltransferase
MYQLNIKTLGQVFTPKKIVDFMLTLKHNQGSVLEPSTGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKVFPNAMPNCVIFRFCKGNFSRITNGCLQFLCKKGILYFLNQSYTQKLSEVFQVKVGAVSGCDKIFKNEKYGNLEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNENNWFEWGRMHHISPKKRIYVNTKTRQKNPFFIHQCPNYDGSILVLFPYNQNLDLQNLCDKLNAINWQELGFVCDGRFLFSQRSLENALLPKDFLNEDKTC
>NC_017375.1|WP_001115888.1|978396_978603_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASVVVIIDEVDSNNYGLGGESVHHLRQKN
>NC_017375.1|WP_001099598.1|978748_979330_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCASCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQHFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NC_017375.1|WP_001052332.1|979326_980472_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNPSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKMEQVLEQIAQFGMPNYFGPQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIINAFSLKENLEFFKQKNLNINPNTLKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEAAPTGLLDGKKALYAKNLSLEIEKEFQHNLLNSHAKTLGSRRFFWVFAENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NC_017375.1|WP_080006322.1|980410_981391_+|zinc-metalloprotease-HtpX
MRARCSKKSSMRKEKIMTNFEKIIAQNRLKTNAVLATYCVIFAFIGLLVDVIRINANDLGIALFKLMTFQIFPTITMIMFLVAFVIIVVCIQNFSSIMLSGDEYKLIDSSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIIKAPYMNAFASGWNESNSLIALTSTLIERLDRDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLAANFSVYFFMGNRKNSGANLARMILLVLQIILPFITLLLQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYKENDYKDTDTNSTRSAAYLFSTEMFSTHPSIKNRIQSLSRRVI
>NC_017375.1|WP_000426987.1|981391_981934_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFWGNISLGYIPKEKIVGISAIAKLIEIYSRRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLKGLFKKDPKTRSEFIQLLKS
>NC_017375.1|WP_001064309.1|981949_982861_+|polyprenyl-synthetase-family-protein
MNNPNLSFYYNECERFESFLNHHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALGIECLHTYSLIHDDLPCMDNASLRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNSLLESHIIVELIKILSANGGIKGMVLGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLMMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDKEESGKTTHLDGVKNSFVNLLGLEEASGYAQTLKTEVLNDLNLLKPAYPLLQENLNALLNTLFKGKT
>NC_017375.1|WP_000722455.1|982857_983661_+|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNIFTNGYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKCTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHVSITPLNLDLTSYDDLKNLESWHKGMLK
>NC_017375.1|WP_000041797.1|983657_984317_+|hypothetical-protein
MSKNHRLAFLGLIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRE
>NC_017375.1|WP_000236821.1|984320_984923_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDSANMALDFGLMQQEMQVFIESFDHAHHFWDKESDEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTRILQKSVFSNNEGELKISSVRVHETKNGYAESFLKDLENPHFKSLVHNHCVSFSQGIQNLWHDKDFFNKIISDEKQCFFHAKPPHQIP
>NC_017375.1|WP_000775586.1|984919_985675_+|7-carboxy-7-deazaguanine-synthase-QueE
MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNFSCRGFNCKTTLHDETLTGCDSLYAVHPKFKETWDYYHEPKSLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYHKKIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKFVLESKNATQSIIEIQNLLKQLPLKNNEIFLMPLGATNKELDKNLKTLAPLALEHGFNLSDRLHIRLWDNQKGF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017375_2	2.2\|970855\|31\|NC_017375\|CRT	970855-970885	31	NZ_CP045274	Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence	87744-87774	8	0.742
NC_017375_2	2.2\|970855\|31\|NC_017375\|CRT	970855-970885	31	NZ_CP032533	Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence	27066-27096	8	0.742
NC_017375_2	2.2\|970855\|31\|NC_017375\|CRT	970855-970885	31	NZ_CP009921	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_2, complete sequence	185365-185395	8	0.742
NC_017375_2	2.2\|970855\|31\|NC_017375\|CRT	970855-970885	31	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	752262-752292	8	0.742
NC_017375_2	2.2\|970855\|31\|NC_017375\|CRT	970855-970885	31	NZ_CP035095	Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed1, complete sequence	291581-291611	8	0.742
NC_017375_2	2.2\|970855\|31\|NC_017375\|CRT	970855-970885	31	NC_028671	Enterococcus phage vB_EfaS_IME197, complete genome	17497-17527	9	0.71

1. spacer 2.2|970855|31|NC_017375|CRT matches to NZ_CP045274 (Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence) position: , mismatch: 8, identity: 0.742

atagcgctcaatctgtttttgaaaacagcaa	CRISPR spacer
cttttgaccaatctgtttttgaaaactgtaa	Protospacer
 *  .* .****************** *.**

2. spacer 2.2|970855|31|NC_017375|CRT matches to NZ_CP032533 (Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence) position: , mismatch: 8, identity: 0.742

atagcgctcaatctgtttttgaaaacagcaa	CRISPR spacer
cttttgaccaatctgtttttgaaaactgtaa	Protospacer
 *  .* .****************** *.**

3. spacer 2.2|970855|31|NC_017375|CRT matches to NZ_CP009921 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid pBMV_2, complete sequence) position: , mismatch: 8, identity: 0.742

atagcgctcaatctgtttttgaaaacagcaa	CRISPR spacer
cttttgaccaatctgtttttgaaaactgtaa	Protospacer
 *  .* .****************** *.**

4. spacer 2.2|970855|31|NC_017375|CRT matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 8, identity: 0.742

----atagcgctcaatctgtttttgaaaacagcaa	CRISPR spacer
gatcaagg----caatctccttttgaaaacagcaa	Protospacer
    * .*    ****** .***************

5. spacer 2.2|970855|31|NC_017375|CRT matches to NZ_CP035095 (Bacillus megaterium NBRC 15308 = ATCC 14581 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

atagcgctcaatctgtttttgaaaacagcaa	CRISPR spacer
cttttgaccaatctgtttttgaaaactgtaa	Protospacer
 *  .* .****************** *.**

6. spacer 2.2|970855|31|NC_017375|CRT matches to NC_028671 (Enterococcus phage vB_EfaS_IME197, complete genome) position: , mismatch: 9, identity: 0.71

atagcgctcaatctgtttttgaaaacagcaa	CRISPR spacer
ttgatgctcaatctgttttagaaaaaagtgg	Protospacer
 *...************** ***** **...

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage