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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_015520 Mahella australiensis 50-1 BON, complete sequence 4 crisprs c2c4_V-U1,WYL,cas14k,RT,cas4,csa3,cas3,DEDDh,cas2,cas1,cas5,cas7b,cas8b1,cas6,Cas9_archaeal,csf3gr5,csf2gr7,csf1gr8 1 7 8 0

Results visualization

1. NC_015520
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015520_1 271580-271668 TypeV-U1 NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015520_2 2336692-2342216 TypeI-B NA
82 spacers
cas4,cas1,cas2,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015520_3 2645347-2645438 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015520_4 2671465-2671964 TypeIV-A NA
7 spacers
csf3gr5,cas6,csf2gr7,csf1gr8

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_015520_3 3.1|2645378|30|NC_015520|CRISPRCasFinder 2645378-2645407 30 NC_015520.1 2642578-2642607 0 1.0

1. spacer 3.1|2645378|30|NC_015520|CRISPRCasFinder matches to position: 2642578-2642607, mismatch: 0, identity: 1.0

ggagcaagccttccaagagtctttgaggtc	CRISPR spacer
ggagcaagccttccaagagtctttgaggtc	Protospacer
******************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_015520_2 2.62|2340815|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2340815-2340851 37 MK448709 Streptococcus phage Javan231, complete genome 28594-28630 8 0.784
NC_015520_2 2.62|2340815|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2340815-2340851 37 MK448710 Streptococcus phage Javan233, complete genome 28594-28630 8 0.784
NC_015520_2 2.35|2339013|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2339013-2339049 37 LT615366 Enterococcus phage VPE25 genome assembly, chromosome: VPE25 70842-70878 9 0.757
NC_015520_2 2.35|2339013|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2339013-2339049 37 LT546030 Enterococcus phage VPE25 genome assembly, chromosome: I 70842-70878 9 0.757
NC_015520_2 2.35|2339013|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2339013-2339049 37 MT119360 Enterococcus phage nattely, complete genome 70028-70064 9 0.757
NC_015520_2 2.57|2340479|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2340479-2340514 36 CP015514 Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence 359455-359490 9 0.75
NC_015520_2 2.40|2339347|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2339347-2339382 36 NZ_AP014822 Geminocystis sp. NIES-3709 plasmid pGM3709_01, complete sequence 19372-19407 10 0.722
NC_015520_2 2.52|2340146|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2340146-2340181 36 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 72377-72412 10 0.722
NC_015520_2 2.52|2340146|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2340146-2340181 36 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 74614-74649 10 0.722
NC_015520_2 2.52|2340146|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2340146-2340181 36 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 85330-85365 10 0.722
NC_015520_2 2.52|2340146|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2340146-2340181 36 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 117815-117850 10 0.722
NC_015520_2 2.63|2340882|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2340882-2340918 37 NC_048807 Erwinia phage pEp_SNUABM_01, complete genome 128921-128957 11 0.703
NC_015520_2 2.82|2342152|35|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2342152-2342186 35 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 677364-677398 11 0.686
NC_015520_2 2.82|2342152|35|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2342152-2342186 35 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 444229-444263 11 0.686
NC_015520_2 2.82|2342152|35|NC_015520|CRISPRCasFinder,CRT,PILER-CR 2342152-2342186 35 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 444279-444313 11 0.686

1. spacer 2.62|2340815|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to MK448709 (Streptococcus phage Javan231, complete genome) position: , mismatch: 8, identity: 0.784

gtggacaaggtttctttgataccattccaagcatctg	CRISPR spacer
ttcgagaatgtttctttgataccattccaaagattag	Protospacer
 * ** ** *********************. **. *

2. spacer 2.62|2340815|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to MK448710 (Streptococcus phage Javan233, complete genome) position: , mismatch: 8, identity: 0.784

gtggacaaggtttctttgataccattccaagcatctg	CRISPR spacer
ttcgagaatgtttctttgataccattccaaagattag	Protospacer
 * ** ** *********************. **. *

3. spacer 2.35|2339013|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to LT615366 (Enterococcus phage VPE25 genome assembly, chromosome: VPE25) position: , mismatch: 9, identity: 0.757

tttcgccaacttcttttattttgttccatgtattgat	CRISPR spacer
ttgagctaacttcttttactttgttccatgcgtccgt	Protospacer
**  **.***********.***********..*. .*

4. spacer 2.35|2339013|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to LT546030 (Enterococcus phage VPE25 genome assembly, chromosome: I) position: , mismatch: 9, identity: 0.757

tttcgccaacttcttttattttgttccatgtattgat	CRISPR spacer
ttgagctaacttcttttactttgttccatgcgtccgt	Protospacer
**  **.***********.***********..*. .*

5. spacer 2.35|2339013|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 9, identity: 0.757

tttcgccaacttcttttattttgttccatgtattgat	CRISPR spacer
ttgaactaacttcttttattttgttccacgcatctgt	Protospacer
**  .*.*********************.*.**. .*

6. spacer 2.57|2340479|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

catggccagtgatacttgttcagctaaatgatactc	CRISPR spacer
aatgtttctggattctttttcagctaaatgatactc	Protospacer
 *** ..   *** *** ******************

7. spacer 2.40|2339347|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014822 (Geminocystis sp. NIES-3709 plasmid pGM3709_01, complete sequence) position: , mismatch: 10, identity: 0.722

gcccgttaaaaggtaataacaaagatgtgtattgtg	CRISPR spacer
accagttaaaaggtaataacaaaaatgctttatccc	Protospacer
.** *******************.***. *  * . 

8. spacer 2.52|2340146|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 10, identity: 0.722

tcaatgtattttttatttctctttctattattatta	CRISPR spacer
cttgtttattttttctttctctttcttttattgctt	Protospacer
.. .* ******** *********** *****..* 

9. spacer 2.52|2340146|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 10, identity: 0.722

tcaatgtattttttatttctctttctattattatta	CRISPR spacer
cttgtttattttttctttctctttcttttattgctt	Protospacer
.. .* ******** *********** *****..* 

10. spacer 2.52|2340146|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 10, identity: 0.722

tcaatgtattttttatttctctttctattattatta	CRISPR spacer
cttgtttattttttctttctctttcttttattgctt	Protospacer
.. .* ******** *********** *****..* 

11. spacer 2.52|2340146|36|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 10, identity: 0.722

tcaatgtattttttatttctctttctattattatta	CRISPR spacer
cttgtttattttttctttctctttcttttattgctt	Protospacer
.. .* ******** *********** *****..* 

12. spacer 2.63|2340882|37|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to NC_048807 (Erwinia phage pEp_SNUABM_01, complete genome) position: , mismatch: 11, identity: 0.703

tcttggattgggaatatgtgtatcaatccaatgaatt	CRISPR spacer
ttgccacttgcgaatatgtctatcaatccaatgacgg	Protospacer
*. . . *** ******** **************   

13. spacer 2.82|2342152|35|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 11, identity: 0.686

atgcctgcttgtctttaccgaagatgaattttatt	CRISPR spacer
acattatcttgtctttacagaagatgattttttag	Protospacer
*....  *********** ******** ****   

14. spacer 2.82|2342152|35|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 11, identity: 0.686

atgcctgcttgtctttaccgaagatgaattttatt	CRISPR spacer
acattatcttgtctttacagaagatgattttttag	Protospacer
*....  *********** ******** ****   

15. spacer 2.82|2342152|35|NC_015520|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 11, identity: 0.686

atgcctgcttgtctttaccgaagatgaattttatt	CRISPR spacer
acattatcttgtctttacagaagatgattttttag	Protospacer
*....  *********** ******** ****   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 70309 : 84066 17 Bacillus_phage(44.44%) portal,tail NA
DBSCAN-SWA_2 589173 : 627648 56 Bacillus_phage(38.71%) terminase,tail,integrase,plate,portal attL 590146:590195|attR 630435:630484
DBSCAN-SWA_3 966980 : 978054 11 Bacillus_phage(14.29%) tRNA NA
DBSCAN-SWA_4 1468617 : 1476065 9 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_5 1716814 : 1729623 12 Synechococcus_phage(40.0%) NA NA
DBSCAN-SWA_6 2597728 : 2603133 8 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_7 2921400 : 3004391 85 Erysipelothrix_phage(73.81%) terminase,tail,protease,capsid,holin,head,portal,transposase NA
DBSCAN-SWA_8 3059140 : 3092273 48 Erysipelothrix_phage(17.39%) terminase,tail,protease,integrase,capsid,head,portal attL 3041257:3041301|attR 3060355:3060399
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage