CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017218	Bifidobacterium breve ACS-071-V-Sch8b, complete genome	8 crisprs	WYL,cas3,DEDDh,cas2,cas1,cas4,cas7,cas8c	2	18	0	0

1. NC_017218

CRISPR-Cas detection and classification

Crispr_ID: NC_017218_1

• CRISPR_ID: NC_017218_1
• CRISPR_location: 132537-132873
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 6 spacers

Consensus repeat of NC_017218_1

Consensus_repeat	Method
TACTGGTGGTTTTGCCCCGCTGAGG	CRISPRCasFinder

spacers of NC_017218_1

>1.1|132562|27|NC_017218|CRISPRCasFinder
CGTTGTTAGCGGTGCTTTTTTACCAGC
>1.2|132614|27|NC_017218|CRISPRCasFinder
AGCTGTCAGCGGTGCAAAACTTCCAGT
>1.3|132666|27|NC_017218|CRISPRCasFinder
ATTAGTAAGCGGTGTAGAGCTGCCAGC
>1.4|132718|27|NC_017218|CRISPRCasFinder
GGTTGTGGACGGTGCGGAGCCCCCATG
>1.5|132770|27|NC_017218|CRISPRCasFinder
AGCTGTCAGTGGCACGAAGTTTCCAGT
>1.6|132822|27|NC_017218|CRISPRCasFinder
GGTGCTGAGCAACGCTTTTATGCCAAT

CRISPR arrays and Neighbor proteins around NC_017218_1

CRISPR arrays

The CRISPR arrays of NC_017218_1

>merge|NC_017218|1|132537-132873|CRISPRCasFinder
TACTGGTGGTTTTGCTCCGCTGGTGCGTTGTTAGCGGTGCTTTTTTACCAGCTCTTGGCGGGATAGCTCCGCTGAGGAGCTGTCAGCGGTGCAAAACTTCCAGTTATTGGTAGTCTGGCCTCATTGAGTATTAGTAAGCGGTGTAGAGCTGCCAGCTACTGGTGGTTTTGCCCCGCTGAGGGGTTGTGGACGGTGCGGAGCCCCCATGTACTGGCGGTTTTGCCCCGCTGAGGAGCTGTCAGTGGCACGAAGTTTCCAGTTACTGGTGGTTTTGCGTCGTTGAGGGGTGCTGAGCAACGCTTTTATGCCAATTGCTGGCGATTTTGCGCCGCACAGG

>NC_017218|1|1|132537-132873|CRISPRCasFinder
TACTGGTGGTTTTGCTCCGCTGGTG	CGTTGTTAGCGGTGCTTTTTTACCAGC
TCTTGGCGGGATAGCTCCGCTGAGG	AGCTGTCAGCGGTGCAAAACTTCCAGT
TATTGGTAGTCTGGCCTCATTGAGT	ATTAGTAAGCGGTGTAGAGCTGCCAGC
TACTGGTGGTTTTGCCCCGCTGAGG	GGTTGTGGACGGTGCGGAGCCCCCATG
TACTGGCGGTTTTGCCCCGCTGAGG	AGCTGTCAGTGGCACGAAGTTTCCAGT
TACTGGTGGTTTTGCGTCGTTGAGG	GGTGCTGAGCAACGCTTTTATGCCAAT
TGCTGGCGATTTTGCGCCGCACAGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017218.1|WP_014483283.1|129554_131189_+|MFS-transporter	unknown	unknown	gnl|CDD|349949
NC_017218.1|WP_025331964.1|150521_151481_+|class-C-sortase	unknown	unknown	gnl|CDD|320676
NC_017218.1|WP_014483284.1|131258_132311_+|LacI-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380514
NC_017218.1|WP_155115203.1|124970_126038_+|hypothetical-protein	unknown	unknown	gnl|CDD|376809
NC_017218.1|WP_014483278.1|121518_122805_+|adenylosuccinate-synthase	unknown	unknown	gnl|CDD|234904
NC_017218.1|WP_014483277.1|119285_120221_+|EamA-family-transporter	unknown	unknown	gnl|CDD|273359
NC_017218.1|WP_014483279.1|122828_124412_+|ClC-family-H(+)/Cl(-)-exchange-transporter	unknown	unknown	gnl|CDD|238504
NC_017218.1|WP_014483280.1|126311_127397_+|LacI-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380514
NC_017218.1|WP_014483288.1|148429_150265_+|isopeptide-forming-domain-containing-fimbrial-protein	unknown	unknown	gnl|CDD|374637
NC_017218.1|WP_014483282.1|127823_129350_+|sucrose-phosphorylase	unknown	unknown	gnl|CDD|237528
NC_017218.1|WP_003832415.1|138653_139682_-|membrane-protein	unknown	unknown	gnl|CDD|197670
NC_017218.1|WP_003832413.1|137865_138657_-|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_041473247.1|124599_125643_+|CrcB-family-protein	unknown	unknown	gnl|CDD|223317
NC_017218.1|WP_041473326.1|143912_148325_+|choice-of-anchor-A-family-protein	unknown	unknown	gnl|CDD|380024
NC_017218.1|WP_014483287.1|141974_143006_-|LacI-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NC_017218.1|WP_003832411.1|136535_137588_+|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NC_017218.1|WP_014483285.1|133294_134662_+|MHS-family-MFS-transporter	unknown	unknown	gnl|CDD|340927
NC_017218.1|WP_003827968.1|135055_136108_+|ketol-acid-reductoisomerase	unknown	unknown	gnl|CDD|235491
NC_017218.1|WP_003827956.1|120283_121351_+|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl|CDD|236406
NC_017218.1|WP_014483286.1|139888_141703_-|glycoside-hydrolase-family-13-protein	unknown	unknown	gnl|CDD|200471

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017218.1|WP_014483283.1|129554_131189_+|MFS-transporter	gnl|CDD|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.05983e-13
NC_017218.1|WP_025331964.1|150521_151481_+|class-C-sortase	gnl|CDD|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	6.65158e-86
NC_017218.1|WP_014483284.1|131258_132311_+|LacI-family-transcriptional-regulator	gnl|CDD|380514	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	4.06766e-77
NC_017218.1|WP_155115203.1|124970_126038_+|hypothetical-protein	gnl|CDD|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	7.14351e-24
NC_017218.1|WP_014483278.1|121518_122805_+|adenylosuccinate-synthase	gnl|CDD|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NC_017218.1|WP_014483277.1|119285_120221_+|EamA-family-transporter	gnl|CDD|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	5.79022e-20
NC_017218.1|WP_014483279.1|122828_124412_+|ClC-family-H(+)/Cl(-)-exchange-transporter	gnl|CDD|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	1.20331e-154
NC_017218.1|WP_014483280.1|126311_127397_+|LacI-family-transcriptional-regulator	gnl|CDD|380514	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	2.57412e-79
NC_017218.1|WP_014483288.1|148429_150265_+|isopeptide-forming-domain-containing-fimbrial-protein	gnl|CDD|374637	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain. GramPos_pilinBB is one of the major backbone units of Gram-positive pili, such as those from S.pneumoniae. There are three major pilin subunits that form the polymeric backbone of the pilin from S. pneumoniae, constructed of three transthyretin-like, CnaB, domains along with a crucial N-terminal domain, D1. The three Cna-B like domains are stabilized by internal Lys-Asn isopeptdie bonds, Gram-positive pili are formed from a single chain of covalently linked subunit proteins (pilins), usually comprising an adhesin at the distal tip, a major pilin that forms the polymer shaft and a minor pilin that mediates cell wall anchoring at the base.	8.53999e-11
NC_017218.1|WP_014483282.1|127823_129350_+|sucrose-phosphorylase	gnl|CDD|237528	PRK13840, PRK13840, sucrose phosphorylase; Provisional.	0
NC_017218.1|WP_003832415.1|138653_139682_-|membrane-protein	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	0.00485944
NC_017218.1|WP_041473247.1|124599_125643_+|CrcB-family-protein	gnl|CDD|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	1.44628e-22
NC_017218.1|WP_041473326.1|143912_148325_+|choice-of-anchor-A-family-protein	gnl|CDD|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	6.94758e-12
NC_017218.1|WP_014483287.1|141974_143006_-|LacI-family-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	9.88077e-79
NC_017218.1|WP_003832411.1|136535_137588_+|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NC_017218.1|WP_014483285.1|133294_134662_+|MHS-family-MFS-transporter	gnl|CDD|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74298e-176
NC_017218.1|WP_003827968.1|135055_136108_+|ketol-acid-reductoisomerase	gnl|CDD|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NC_017218.1|WP_003827956.1|120283_121351_+|class-II-fructose-bisphosphate-aldolase	gnl|CDD|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
NC_017218.1|WP_014483286.1|139888_141703_-|glycoside-hydrolase-family-13-protein	gnl|CDD|200471	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0

Protein sequences

>NC_017218.1|WP_014483284.1|131258_132311_+|LacI-family-transcriptional-regulator
MVGMRDVAKTAGVSLSTVSLVINNTGYVSDDMRAKVEAAMRQLNYIPNELARNLYRNRTNTIGVIMPTIAHPFFATLTAHLQREFAARDLKTLLCSIADADKGEGEYVDMLQRHMMDGIVMASHTEHPGGYWTSIHRPIVAFDRTLGEGVPAVRSDHEQGGRLIARQLIDSGARHVVLVGGPRSQFAEATTFPTIRYHLTVERMLADAGIACDYVEAGIVADICAHEATARAIFERYSDVDAIVGSDLVASVALQEALRRGISVPRDLQIIAYDGTFMAETAGMRLTAVRQDFPAVAAALASRMDSQIAADNGTTSAAAAEGGNAVAANGGQSTSEDIISVTLIPGETTR
>NC_017218.1|WP_014483283.1|129554_131189_+|MFS-transporter
MLEPYVRPGIDDRPDLDKALSPEDKDAVARLAIKDRRRPPEASADQPEAQAVRLAAAGSSAAAAAAASVDAPAPDLSSAYLDMRDPMVAANGQRPTAVQISRLNWGFFVASILVGAPWAALNTIAMPNAVARLFDYDTASAISVTINPSTGRPLPVATDLVMPLAVLVVVGVVASMFAMPLVSALSDRTRIPLGRRTPWMVAGGVLCALITLVLGQNTGLVVLCFFWALMQFAYAMISVPLASAISERVPDKFRPCIERWHGIGVMLGQALGVCMGALGVMFDSFTPFAYTAVLFAVSGILTVIMLPKEPSSQEQPHQRFESSQVFDQLRPPAHAPAFARVFAARVCMMTGVGLTGVFLWYLVRFWVYGKAVVFTSAPLTIPAGLLIAGMAAATLIGAALASWAAGPISEKIEERNIATTAVVAASCLLYAIGVAVAWGLGVWSTGTARENGMLLFALISGFAFGVYDALGLELVMNALPDPRNAGHDLGIYALANSVGLALAAIIGAVLVSAFASSFGYYLLFPSAIVMVFLAGIITLSSKAE
>NC_017218.1|WP_014483282.1|127823_129350_+|sucrose-phosphorylase
MKNKVQLIAYADRLGDGTLSSMTDILRTRFDGVYDGVHVLPFFTPFDGADAGFDPIDHTKVDPRLGSWDDVAELSKTHSIMVDAIVNHMSWESAQFQDVLKNGERSEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPFTHYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMAASHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGMKRGLEILIEVHSYYKKQVGIASKVDRVYDFALPPLLLHSLFTGHVEPVAHWTEIRPNNAVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTYYSALGCNDQHYLAARAVQFFLPGVPQVYYVGALAGRNDMELLRKTNNGRDINRHYYSTAEIDENLERPVVKALNALAKFRNELTAFNGEFSYEADGDTSITFRWIAADGKTKAALIFEPGRGLGTDNTTPVASLAWTDAAGDHETDDLLSNPPIADID
>NC_017218.1|WP_014483280.1|126311_127397_+|LacI-family-transcriptional-regulator
MVGMRDVAKKAGVSLSTVSLVVNGNGYVSDDMRERVRKAMQLLNYVPNELARNLYHNRTNLVGVIVPTIRHPFFATFTAHLQHALAAQGLRTMLCSTADEADGEIQYVDMLRRHMMDGIVMCAHTSHPGDYWTSIHRPIVAFDRVLGDGISSIGSDHEQGGRLIAQMLIRNGAKHVVMIGGPRDQFFDLAARGEVEEGPFDLGKTTFPTVRYYLTLEQELTSAGVKYEYVEAGEVMDFAGYHRAVSNALDKVTTDGVDAVVSSDIGASFCVREALSRGISIPDELQIVAYDGTYLTDLAGMKLTAVAQDFSAIAQSTADHIVQAIANEEVAAANASRRDIPKPFEPNVLIPMTLVPGDTTR
>NC_017218.1|WP_155115203.1|124970_126038_+|hypothetical-protein
MAASPGAAGCQPWCWARLARWAFDDVRRDAGNDGRSARAAYRQCAWLSCGKFCRRFAHCRRRRGSDAGTAVTEYSKAGSGCVFSCFRVRFCRIGHAGRTPCESGRRGAFCRAGRNGSRAGGAADCTDGTGSASRNANRAADCHPAYADRPRSADSSAGRSSAGTVIAAVVARAGYSRLGAAARADSAVAADPAAGQPASAQLRAQTDHCGDFACRRPGYRGGALMMWMICLFGGLGAMARYVLDVSIQRGWNRENRRTNRNFPLSTLVINGVASLCAGIAMMSYYSQSVDMDTVMMFVVGFLGGFSTFSTALNEVVSLIRQRRFTLALGYGIATVAVPLICVATGFGIALLANPA
>NC_017218.1|WP_041473247.1|124599_125643_+|CrcB-family-protein
MESQEQSPGDVVTAGEDSHPITQAIDAVEVTHAGATAPAANTMDPPTIPLAPMKRMQARFNPLADGLMYVVVFVGGFVGVGCRHALDMLLPSVSGTPFVVGTFVSNMVACFLFAMLTEFMATASWLRRRVRQVVSRGVGLGLLGGLSTMSGVMLETMEGLHERHIASALGYLAGNFAGGLLTAAAGVVLMQALLSRSTRKRVRGAFSAVSVSGSAESDTQGVRHVKVADVARSAAQAAMEAAQAAQQIAQTGQVPRVETPTVPPTAIQPMQTGHVPQIPPLVVPQLAQSSQPLLREPDTPDLGQLPEPIQQSQPIQQPANPLPPSFEPKPITAEISLVADLATGEVR
>NC_017218.1|WP_014483279.1|122828_124412_+|ClC-family-H(+)/Cl(-)-exchange-transporter
MTGNDAAHDIRRLIPRFDHLKWKMAAAGIVIGLVSGLLVVVYRLGIEYGTDASRWIYARIRETPWLIAPWAFAAVAAALAIAWMVGKEPMAGGSGIPQTNGVVICGLKMRWQTILPVRFVGGLLGALFGLSLGREGPSIQIGASGAQCVSHRLRGRRREDMQEHYLVTAGAAAGLSAAFSAPLSGMMFALEGVHRSFSPAILMGATAASLTADFVSKYCFGLRPVLDFGDIGQLSLEEYVWLIPLGLVAGLVGSLMNRSLLGFQTLYCKLPAWSRPMIAIAIALPVGIWLPDVLGGGSNLIDTAEHARVGLGMLCLLFVAKMLFTSTSFGSGAPGGIFMPILAVGSLAGGICGEVLHRFGNLPSDAVAVFAVCVMTGTLAASVKTPITSILLAVEMSGTLTHMLPVAAVAFVALLVSDLLRTKPIYGELLERYMRAQGMQMAIASHVGSGIMELPLEMGAIADGKRVRDVRWPSGCLIIGLRRGESEIVPRGDTRLRAGDYLVVLFSGEEEREVRPAMRRLCDARLD
>NC_017218.1|WP_014483278.1|121518_122805_+|adenylosuccinate-synthase
MPGIVLIGAQWGDEGKGKATDLIGTKVDYVARFNGGNNAGHSVVVGDESYALHLLPSGIINPNLTPVIGNGVVVDPEVLFEEIDGLESRGIDCSHLLVSEAAHIIAPYHRTLDKVTERFLGKHKIGTTGRGIGPAYADKINRIGIRVHDLFNADHLHDKVEASLHQKNQMLVKLYNRRAIDVDQTTDELLKLGERLKPYVANTGLILNKALDEGKTVLFEGAQATMLDVDHGTYPFVTSSNPTAGGACTGTGVGPTKITRVIGVAKAYVTRVGEGPFPTELLDESGEWLRQQGHEFGVTTGRPRRCGWFDAVVNRYASQVNGLTDIVLTKLDVLTGLKEIPICVAYDVDGERHDDMPTDQAAFAAAKPIYETMAGWNEDISNCHSFDDLPATCQAYVKRLEELSNCRISVIGTGPQRDHVIQINSLVD
>NC_017218.1|WP_003827956.1|120283_121351_+|class-II-fructose-bisphosphate-aldolase
MTIATPERYAEMLDAARRGGYAYPAINVSSSQTLNAALKGFADAESDGIIQVSVGAAAYLSGIGVNDRVTGSLALAAFAHEVAAKYPNITIALHTDHCAKQYLDEWVRPLLAHEADQVAHGQEPTFQSHMWDGSTVPLKENLDIAEELLDKSQAAHTVLEIEIGAVGGEEDGYSAKIDERLYSTPADGLEVARRLGLGERGRYMAAFTFGNVHGSYKPGVVKLRPALLGDIQSRVARAVVEGELPSAAGIVDFPNGKPFELVFHGGSGSRPEEIAEAVSHGVIKMNIDTDTQYSFTRPIADHVFENYDKVLKIDGEVGEKKFYDPRSWGRKAEESMSARVAEACKQLGSAGKALR
>NC_017218.1|WP_014483277.1|119285_120221_+|EamA-family-transporter
MCEPKTAATNGQPTPTLERTPHDIFVGAGLALAGGVFWGVNATVSKLLMNDYHADPLWIACVRELLAGVVFLVCAGIFTPDKFINSLKDYRSYPRLLLCAFFCVLMVQVSYLKAIDWTNSGTATVLQTLNLLVVLVFVCIMGKRLPGKRESIGVVLAFVGTVLIATGGDLSQLSLPLPGLLWGLTDAVCTSLLAILPIALMAKWGNFMANGVMFIVSGLMLLPLVHPWTTAPALDWFGIGLMVFTVVFGTFGAYWLFLGGTQRCGAMRATMLGTSEPVTATITGVLFAGAVFTPTDLIGFAMIIIMVFLVR
>NC_017218.1|WP_014483285.1|133294_134662_+|MHS-family-MFS-transporter
MTAAVEETGLGQAASKATAMVRDSVKTVIAASMVGTAIEFYDFYAYGTAAANYFPHIFFSDKANPTVALLMSLLTFAIAFIARPLGSLVFGHFGDRMGRKTTLVVSLMTMGVGTFLIGCLPTYDQVGVAAVAILCLLRFIQGIGLGGEWSGAALVATENAPEDKRALYGSFPELGAPIGFFLSNGTYFVLESFNDQSAMLAWGWRVPFLLSAILVIVGLVVRVHMEETPIFRMAQEQKKVVKSPLTEVFRKSWRQVLQATFLVAVTYTLFYTLATWSLAWGTKDTANGGGNLGFNNQEYLLMLMISICVFALFIVLSCLYADKLGRRRVLTFSSCALVVFAVLFPFLLDGQVVGQRNFFANMVFLCVGFALMGIAFGPIGAFLPELFDANVRYSGSGIGYNLAAIVGAAFVPTIATWLAHNWGVHSVGLYLAVMAVCCLVSVLTCKETKDVDFTK
>NC_017218.1|WP_003827968.1|135055_136108_+|ketol-acid-reductoisomerase
MAATIWYEKDADLSVFDGKKVAILGYGSQGHAHALNLRDSGVDVVVGLRPSSKSVEFAKEQGLEVKPVGEAVAEADVVMILLPDQYQAKVYEEEVEPNLKPGAALAFAHGFNIHYGYIKPSEDHPVFMVAPKGPGHIVRREYAAGRGVPVVVAVEQDPDGKTWPLCLAYAKALGALRAGAIKTTFTEETETDLFGEQDVLMGGINHLCDLGFDVLTEAGYQPEIAYFEVFHELKMLVDLANEGGLNKARWSCSDTAQYGDYTSTVITDETKKRMQYQLKRIQDGSFAKEFMDDQAAGAPKFKKLQEEFSHPHLETVGPKLRAMFSWNNAEAKDKDEAESFNGKIARTQVQ
>NC_017218.1|WP_003832411.1|136535_137588_+|ketol-acid-reductoisomerase
MAAQIWYENDGDLSVLEGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRPTSKSVDFAKEQGLEVKSVAEASAEADVIMILAPDQYQRTIWANDIEPNIKPGAAVAFAHGFNIHYGYIKPTEDHPVFMVAPKGPGHIVRREYAAGRGVPVVVAVEQDPRGDGWALTLAYAKALGALRAGAIKTTFKEETETDLFGEQNVLMGGVNKLVEMGFEVLTDAGYQPEIAYFEVCHELKMLVDLMNEGGLNKARWSCSDTAQYGDYTNTVINEDCRKRMEYHLQRIQDGSFAKEFIDDQDAGAPHFKELQEKYSNERIETVGPKLRAMFSWNKDGVKDADEANSFTGKIARAQVQ
>NC_017218.1|WP_003832413.1|137865_138657_-|hypothetical-protein
MTQGLQLIRTAFAGYEDSYVIIGGTACDIIMTDNDLDFRATKDIDMVLIAEGHLREFAQRLWSFIRDGGYTSITKNSAQPHLYRFMHPSTYGYPTMIELFSRHPDFPIVPNSFLTPLHIANNVSSLSAIMLNDSYYRLLQQGRESIQGISVLNEKYLIPFKAKAWLDLNAREQHGEHVDGKDLKKHKYDVFRLAQLLAPEDRVSLNDEAYHDLADFLGEISHETLPMKQLGIRGTQQDIIDLIAGVYQLSIPPRDESSTTMSA
>NC_017218.1|WP_003832415.1|138653_139682_-|membrane-protein
MDAEHYIRETLGLPCQITSWDGTASLPLFLTNGRTFSKLTIDNTSMLIASGEAHPFSITRVTADASRLEQRTDLPIVFQFPRLSAYQRKALIQNHVPFIVPGTQLYIPSLGMVFTQRISSRPLENAQDIEVRPFSPATQLVWLYLLYSNESKVQSDIARALQFTEAQVSVAVTLLEQLAFVHRTKQGRSNSVELLTSRQTSRLDLLKSSWHLLKSPIFSKYTVTNRNRQMIADELIPAGEFALSRRTQLATPKLRIYAVERHWLKQHNKELCIIDPALEKVPDNAYILELWRYDPRLLAQYTQEDYLADPISTALTLGEIADERLEDAIQESIRNTFSGATI
>NC_017218.1|WP_014483286.1|139888_141703_-|glycoside-hydrolase-family-13-protein
MTANNLNDDWWKQAVVYQIYPRSFKDVNGDGIGDIAGVTEKMDYLKNLGVDAIWLSPFYPSDLADGGYDVIDYRNVDPRLGTMDDFDTMAKAAHEAGIKVIVDIVPNHTADKHVFFKEALAAEPGSPARDRYIFRDGRGEHGELPPNDWQSFFGGPAWARVDDGQWYLHLFDKAQPDVNWKNPDIHEEFKKTLRFWSDHGADGFRIDVAHGLAKDLESKPLEELSREYSVVGVLNHDFSHPLFDRREVHDIYREWRKVFNEYDPPRFAVAEAWVVPEHQHLYASMDELGQSFNFDFAQASWYADEFREAIDAGLKAAAETGGSTTTWVMNNHDVPRSPSRYGLPQVKGAPYHQLPHDWLLRNGTTYPEDRELGTRRARAAALMELGLPGAAYIYQGEELGLFEVADIPWDRLEDPTAFHTAQATMDKGRDGCRVPLPWTAADEPALADFSRPTPADDGTGENHVPLCAAGQFGTGASFGFSPAVRADGVTSSAEPHLPQPLWFKDYAVDVEQADPDSMLTLYHAALAIRQESLTATRDTTAEQVDMGDDVVAYTRAAVGGRVFTSITNFGNAPVALPNGSVVLASGPLTPEGQLPTDTSAWVIQ
>NC_017218.1|WP_014483287.1|141974_143006_-|LacI-family-transcriptional-regulator
MAKASIQAVAKEAGVSVSTVSRTFAKPDLVLPETRDKVMAAAEKLDYSISRSAAALKSGQSFRIALLASETITTWFNANIFAGLDSVLRPAGYDTVAYPMRNAEERHDFFVDLPVRRNADAVIVSSFNIEPAEVERLKHMHVPIIGINIPSTDGFDSGVSIDDRTATRAAVEHLIALGHRGIAFVGGTPAETNMRYSAESRLQGVLDAQAAHPELTVTNLQVPRGATETSAALNAVLTAPAGTTAFCFEDDELALPVLYRLRQYGKRVPQDISIVGFDDVEMSQAVGLTTMHQDPFAMGADAGRMALEAIAGGPIEPAFIQPDVPLVLRETTAPPAAPVPAQG
>NC_017218.1|WP_041473326.1|143912_148325_+|choice-of-anchor-A-family-protein
MGTEANPATERDSGVATWVGGDMYVGKKSDNLTNADGPDASYSAEAEGLTVVNGKLMLHPQKNSWNGQGFRFGVAGFGTQYRPAEGSTALVVGGNTVTVMDSATSTAAVKAWNKPGFIDGHSHVGSLSGSQSDVWDRGGTSSIGSYNGASVNWQKDKSGNTQNQDAGNLTKVSVKATDGGAATDKDFSKDTFYQGYVVDDIVSPLAKQNNTGTVSSSISTLSELPRHKYNYYKEGTNAASGISYTFKYDNTTKYGTGRGIAPTTSYTNREKLITFTGTNNASMEVFNLDASMLSDTDENGTLYRGVGFAFTNIADTASVVINVTGNASNISFHNGWQFWWNGAEISDGYSNYNNTDELKKKSAAYDKASQKILWNFSNTDNLTIYGGVANEDGTNTNADKITQDDAAAAMMGSIIVRGNFESHVSTNGRVYTGGDFSMHNPYKAWTFNQAGANDGDSASVLDMDQERHNFPWNGSYTESCSAIAWQKADESGTLLGGTTWAVYGKYDDAASGKNALLTVQDNAFYDKDSADGRFTVEGLKPNATYYIKEVSAGNDYQLNTNVYYVATGDSSATPVNVTQSVTKTDGAYTYGSADMTDGKIVNKKNGHEVSWSKVDADTNKELAGSEWQIQQVKDGAATKSWNVTDNTSKATGVTVNPTSATLDSTNGWKTDLTATVDPKDALQEVAWTFTDKDGNAVDSSTVAVLTRTGNLKTTVTGISSIDATVYVKACSVSNPEVCSALVTIKVKAMSVKDFTVKDSSNRTVENNSTITAAAVDSTLTFTASSTPAVPITWESSNKSVATVTSSGENGQKATVTMTGFGSAVITAKAGDKKVSFTVKVPSTTVYFKKSLMNWSKYYVYYNAGNNNWKFVEMSQSCGDYVYAILPKQSPGTKFLFHGDDENTSTNKWYQGSNKSDFKFTGNEVQVVNQHNDSQVSTAPAGCPASAAAAAQSNDAAVLNENAVVTPADDPQPSDADGVAENAIDDGAKAISCTAADGENGQPGVKCDMDTAAGKFKVGGLDAGTYWLHETTAPYGYTINKTLYQFTIDANGNVTWNGGWASGEATGAIDEKLKPGDNNAISDTPTEVTWNKVDTKGGKLAGSQWKIVGPSPAMDVYCVADNVMVDANGATTPAGIEFTGCTGEKLSDAANTADEAGVITIRGLPVGTYTLTETKAPDGYVATTTVYTLTISDTEASTVVAQTATDRPTTRSGGNREAAANVPNASAPVNIQIPVKKSMKYTSWPKDSNGNYVNFNFKIEATKSTVDANPAAPMPAECSSSDATKNDCTISLAPKSDADDLSNVIAKFGKMTFTDANLAAAAGDASDYAKTYTYKITEIVPDSADAVENLRYSKAEYQVVVTVKQAKDSSGKLSGLSVSATMTRIKDDSGNAEAGGGKMIGTWSSTSTGSSAGTAVEATFVNTKVLTGLPTTGADWTGRLVLLVGDGFILAGVLIAGGYQLAKRRREEDSD
>NC_017218.1|WP_014483288.1|148429_150265_+|isopeptide-forming-domain-containing-fimbrial-protein
MNTIFKRVISGAAALGIAVSGLAIGVSTAYAADPATGSITINKSDAGQVDHSFDGWHLASLTNVTKDSTNKINGFLIDTDDNMARTIVAAMTSDQKVAYEKDANYYSTDNAVANPMGYLVEKVFKDKSGKALSELTSPWGGDSSTLRVFAKSLSKELAKVGAPAADKTGDSALKTGENKELKQGLWFLKDVTTTDDTKGTNSIPIITPTTFDGADSWGTVTLKNTTPTIDKKLVDSKGDGTYTPNTQPDYAVGDDVYYELTSTVPVYTGYDIDSTMKDATKTRIFKINDTASKALTVSAGTVIESVKLTPAQGTAVTLVKDNDYTVTVADYGDVNTPDTDAYKGGHVTTIDLGKYVNKAKGSKSATDGILEGATVTVIVKAKLNKDALISEPGNLQKNPNKVDLEYSNHPEEVNHAHKVPGPEVPVYAYKFDILKTDKAGTTKLPGAKFTIKAVSGTSKHDGKYLGSYGKDGWSYLDSEPAVTDTDGVFTTGKDGKINVSGLDAGTYEVHEIAPPDGYTAISLPKFQFTITPTVGDDAGWKTITVVALSLAKGADERASLSQGGKTLNIWNAKNITELPKTGGAGLAMIVAVGALFIAASGIFALRARRKA
>NC_017218.1|WP_025331964.1|150521_151481_+|class-C-sortase
MRSSTGAKQSGTRTQSRVFTVLSVLFLLIGFAIITTPFVMRAISEYQQNATVQQTQREVDGWPYPQAENQLKTAREYNKKLVAGGQAAIGEVKDPFASNAGQSTTSGADDSMAAKDQEYQSLLDAGQGVMGSIRIPKIDVNLPIYHGTSEDALAVGAGHLYGTSLPVGGKSTHSVITGHRGLPNSLLFTRLDEMKKGDSFYIEVMGKTLGYKVDRITVIKPDDSSKLRITKGEDRVTLMTCTPYGVNSHRLLVSGVRAEIPEEVPDPDDVHGINTTWLALGAIVFLAMLLAFIVILMRRKQKRDREFAGLARHAARPTK

Crispr_ID: NC_017218_2

• CRISPR_ID: NC_017218_2
• CRISPR_location: 561106-562152
• CRISPR_type: Orphan
• Repeat_type: NA:I-C
• Spacer_info: 15 spacers

Consensus repeat of NC_017218_2

Consensus_repeat	Method
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	PILER-CR
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCTCCCCATCCGGGGAGCGNNTGGATTGAAAT	CRT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	PILER-CR
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CRISPRCasFinder

spacers of NC_017218_2

>2.1|561139|35|NC_017218|PILER-CR,CRISPRCasFinder,CRT
AACGCGTACGACAGGGAGACGAACCCGAAACCCGA
>2.2|561207|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT
TGCACGACCGGGACATGAACGCCGCCCTGAACAT
>2.3|561274|33|NC_017218|PILER-CR,CRISPRCasFinder,CRT
GCCAACGTGGGACGCATCCCCAACTTCGACAAG
>2.4|561340|35|NC_017218|PILER-CR,CRISPRCasFinder,CRT
AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT
>2.5|561408|33|NC_017218|PILER-CR,CRISPRCasFinder,CRT
TACGCGTCAATGTACGGCAAAGGCGACGTGTAT
>2.6|561474|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT
TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT
>2.7|561541|33|NC_017218|PILER-CR,CRISPRCasFinder,CRT
CTTTCATCTGATTGGAACGACGCTTCCGATTCT
>2.8|561607|35|NC_017218|CRT
AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT
>2.9|561675|37|NC_017218|CRT
ATTCCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA
>2.10|561745|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder
AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC
>2.11|561812|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder
GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG
>2.12|561879|36|NC_017218|CRT,PILER-CR,CRISPRCasFinder
GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC
>2.13|561948|35|NC_017218|CRT,PILER-CR,CRISPRCasFinder
TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA
>2.14|562016|35|NC_017218|CRT,PILER-CR,CRISPRCasFinder
CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG
>2.15|562084|36|NC_017218|CRT,CRISPRCasFinder
CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC

CRISPR arrays and Neighbor proteins around NC_017218_2

CRISPR arrays

The CRISPR arrays of NC_017218_2

>merge|NC_017218|2|561106-562152|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAACGCGTACGACAGGGAGACGAACCCGAAACCCGAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTGCACGACCGGGACATGAACGCCGCCCTGAACATGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGCCAACGTGGGACGCATCCCCAACTTCGACAAGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAAACCGGGACGCAACCTCACCGCATGGCAGGCCGTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTACGCGTCAATGTACGGCAAAGGCGACGTGTATGTCGCTCCCCATCCGGGGAACGTGGATTGAAATTCGTCAAGCAGGGTCTTCAAAATCACACCCGGATGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCTTTCATCTGATTGGAACGACGCTTCCGATTCTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGGTACAGCCAGTTGAACACGGCTCCCATCCCGTTGTCGCTCCCCATCCGGGGGGGGCGTGGATTGAAATTCCGAGTCGCAGGCCAACGGTGCGGAAATCTACTAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGACGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGTCCACCCACTGGTCGATGGCGCCGTCCGAACCGGTCGATCCCCATCCGGGGAGCGTGGATTGAAATGTAAATCTCAGGTTGCGCGAAAACACATGTTTCGACGTCGATCCCCATCCGGGGAGCGTGGATTGAAATTGGCTCGCCCACAACTGGTACTAAGGAGCGGGACAGTCGCTCCCCATTCGGGGAGCGTGGATTGAAATCTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGCGTCGCTCCCCATCTGGGGAGCGTGGGTTCCTAT

>NC_017218|2|1|561106-561606|PILER-CR
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AACGCGTACGACAGGGAGACGAACCCGAAACCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGCACGACCGGGACATGAACGCCGCCCTGAACAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCAACGTGGGACGCATCCCCAACTTCGACAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT
GTCGCTCCCCATCCGGGGAACGTGGATTGAAAT	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTTTCATCTGATTGGAACGACGCTTCCGATTCT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGGTACAGCCAGTTGAACACGGCTCCCATCCCGTTGTCGCTCCCCATCCGGGGGGGGCGTGGATTGAAATTCCGAGTCGCAGGCCAACGGTGCGGAAATCTACTAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA
GTCGCTCCCCATTCGGGGAGCGTGGATTGAAAT	CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG


>NC_017218|2|2|561106-561607|CRISPRCasFinder
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AACGCGTACGACAGGGAGACGAACCCGAAACCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGCACGACCGGGACATGAACGCCGCCCTGAACAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCAACGTGGGACGCATCCCCAACTTCGACAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT
GTCGCTCCCCATCCGGGGAACGTGGATTGAAAT	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTTTCATCTGATTGGAACGACGCTTCCGATTCT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGGTACAGCCAGTTGAACACGGCTCCCATCCCGTTGTCGCTCCCCATCCGGGGGGGGCGTGGATTGAAATTCCGAGTCGCAGGCCAACGGTGCGGAAATCTACTAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA
GTCGCTCCCCATTCGGGGAGCGTGGATTGAAAT	CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC


>NC_017218|2|1|561106-562152|CRT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AACGCGTACGACAGGGAGACGAACCCGAAACCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGCACGACCGGGACATGAACGCCGCCCTGAACAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCAACGTGGGACGCATCCCCAACTTCGACAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT
GTCGCTCCCCATCCGGGGAACGTGGATTGAAAT	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTTTCATCTGATTGGAACGACGCTTCCGATTCT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT
GTCGCTCCCCATCCGGGGGGGGCGTGGATTGAA	ATTCCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA
GTCGCTCCCCATTCGGGGAGCGTGGATTGAAAT	CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC
GTCGCTCCCCATCTGGGGAGCGTGGGTTCCTAT

>NC_017218|2|2|561712-562083|PILER-CR
	AACGCGTACGACAGGGAGACGAACCCGAAACCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGCACGACCGGGACATGAACGCCGCCCTGAACAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCAACGTGGGACGCATCCCCAACTTCGACAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT
GTCGCTCCCCATCCGGGGAACGTGGATTGAAAT	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTTTCATCTGATTGGAACGACGCTTCCGATTCT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGGTACAGCCAGTTGAACACGGCTCCCATCCCGTTGTCGCTCCCCATCCGGGGGGGGCGTGGATTGAAATTCCGAGTCGCAGGCCAACGGTGCGGAAATCTACTAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA
GTCGCTCCCCATTCGGGGAGCGTGGATTGAAAT	CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT

>NC_017218|2|3|561712-562152|CRISPRCasFinder
	AACGCGTACGACAGGGAGACGAACCCGAAACCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGCACGACCGGGACATGAACGCCGCCCTGAACAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCAACGTGGGACGCATCCCCAACTTCGACAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT
GTCGCTCCCCATCCGGGGAACGTGGATTGAAAT	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTTTCATCTGATTGGAACGACGCTTCCGATTCT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGGTACAGCCAGTTGAACACGGCTCCCATCCCGTTGTCGCTCCCCATCCGGGGGGGGCGTGGATTGAAATTCCGAGTCGCAGGCCAACGGTGCGGAAATCTACTAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA
GTCGCTCCCCATTCGGGGAGCGTGGATTGAAAT	CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC
GTCGCTCCCCATCTGGGGAGCGTGGGTTCCTAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017218.1|WP_003828348.1|555600_556182_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_014483523.1|574819_575533_-|HAD-family-phosphatase	unknown	unknown	gnl|CDD|319790
NC_017218.1|WP_014483512.1|555385_555604_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_100199056.1|571663_572416_-|phosphoserine-phosphatase-SerB	unknown	unknown	gnl|CDD|319803
NC_017218.1|WP_041473264.1|558733_559495_-|ATPase-AAA	unknown	unknown	gnl|CDD|366760
NC_017218.1|WP_014483508.1|548871_549873_+|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|366154
NC_017218.1|WP_014483522.1|573185_574760_+|proteasome-ATPase	unknown	unknown	gnl|CDD|200312
NC_017218.1|WP_014483519.1|569306_571616_-|primosomal-protein-N'	unknown	unknown	gnl|CDD|237844
NC_017218.1|WP_077420776.1|558098_558557_-|hypothetical-protein	unknown	unknown	gnl|CDD|376574
NC_017218.1|WP_014483510.1|553235_553448_-|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_100218423.1|553826_554498_+|IS3-family-transposase	unknown	unknown	gnl|CDD|372570
NC_017218.1|WP_014483518.1|568452_569157_-|HAD-family-phosphatase	unknown	unknown	gnl|CDD|319790
NC_017218.1|WP_014483515.1|563187_564408_-|methionine-adenosyltransferase	unknown	unknown	gnl|CDD|235374
NC_017218.1|WP_014483509.1|549919_551710_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl|CDD|132920
NC_017218.1|WP_014483517.1|567300_568314_-|methionyl-tRNA-formyltransferase	unknown	unknown	gnl|CDD|234567
NC_017218.1|WP_003830251.1|564693_564978_-|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl|CDD|234744
NC_017218.1|WP_003828338.1|553014_553239_-|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_003828323.1|547401_548862_+|flippase	unknown	unknown	gnl|CDD|240533
NC_017218.1|WP_014483521.1|572436_573132_+|DedA-family-protein	unknown	unknown	gnl|CDD|223659
NC_017218.1|WP_077320818.1|565145_567008_+|dihydroxy-acid-dehydratase	unknown	unknown	gnl|CDD|237104

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017218.1|WP_014483517.1|567300_568314_-|methionyl-tRNA-formyltransferase	gnl|CDD|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	8.74061e-130
NC_017218.1|WP_014483523.1|574819_575533_-|HAD-family-phosphatase	gnl|CDD|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.86359e-35
NC_017218.1|WP_014483509.1|549919_551710_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl|CDD|132920	cd07037, TPP_PYR_MenD, Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Escherichia coli MenD (EcMenD) is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of different subunits. EcMenD catalyzes a Stetter-like conjugate addition of alpha-ketoglutarate to isochorismate, leading to the formation of SEPHCHC and carbon dioxide, this addition is the first committed step in the biosynthesis of vitamin K2 (menaquinone).	1.52869e-65
NC_017218.1|WP_100199056.1|571663_572416_-|phosphoserine-phosphatase-SerB	gnl|CDD|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.2709e-100
NC_017218.1|WP_041473264.1|558733_559495_-|ATPase-AAA	gnl|CDD|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.64829e-51
NC_017218.1|WP_014483508.1|548871_549873_+|glycosyltransferase-family-2-protein	gnl|CDD|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.44831e-25
NC_017218.1|WP_014483522.1|573185_574760_+|proteasome-ATPase	gnl|CDD|200312	TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_017218.1|WP_014483519.1|569306_571616_-|primosomal-protein-N'	gnl|CDD|237844	PRK14873, PRK14873, primosomal protein N'.	0
NC_017218.1|WP_077420776.1|558098_558557_-|hypothetical-protein	gnl|CDD|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	6.00736e-09
NC_017218.1|WP_100218423.1|553826_554498_+|IS3-family-transposase	gnl|CDD|372570	pfam13333, rve_2, Integrase core domain.	1.19979e-10
NC_017218.1|WP_014483515.1|563187_564408_-|methionine-adenosyltransferase	gnl|CDD|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NC_017218.1|WP_014483518.1|568452_569157_-|HAD-family-phosphatase	gnl|CDD|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	9.78964e-46
NC_017218.1|WP_003830251.1|564693_564978_-|DNA-directed-RNA-polymerase-subunit-omega	gnl|CDD|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.88678e-17
NC_017218.1|WP_003828323.1|547401_548862_+|flippase	gnl|CDD|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.79741e-41
NC_017218.1|WP_014483521.1|572436_573132_+|DedA-family-protein	gnl|CDD|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.14917e-43
NC_017218.1|WP_077320818.1|565145_567008_+|dihydroxy-acid-dehydratase	gnl|CDD|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0

Protein sequences

>NC_017218.1|WP_041473264.1|558733_559495_-|ATPase-AAA
MNQKNGRTDPGPLRERARSLFISQATIDETLEWATPRQLDAIDRMPATEPANREASKRARLMRQARFPVPKSLDGYDFANVRLPDGYAKEQLTGLDFAAKAQDLVFYGKTGRGKTHLATAPGMLAIEQGRSVRFRQTAELVLQPGKAKRDGALDSLLRDLARADLIILDEFGYAPVRLDGARLLYQIIAGSYERRSIIFTTNIEFSKWGTIFADDKLAAAIIDRIVHHGRLIEFTGPSRRVSQALMFGKTDNQ
>NC_017218.1|WP_077420776.1|558098_558557_-|hypothetical-protein
MDRRVRVPPAPADRTHPRRLPHRRPGRRRARQGQDRSAWRETRRSGTARKGVRDPIKGARWALLKNESDLNAAQRARLEYIANTNETLWTAYKLKERLGMILRQGRGCGRAPAAPVGRGRIPVRHRGILKTRREDRTAPLRHPIRPEILRIL
>NC_017218.1|WP_003828348.1|555600_556182_+|hypothetical-protein
MSELIAWGDESVQTQGGVIPTYYMGACICGLEERDIRRQLLSATKRKVSKLHWRDMTLSEKRRSIPVIEALSLPHIAIAATPLDGTVTSERARRKCLELLLPTLEKEYGISRLVLESRETSQDDRDLMFVRGLRSRRFISRLRVDFAPGFSDARLWIADQALGAIGDAQRGRQDFSSFLETLDMRELDLHHLA
>NC_017218.1|WP_014483512.1|555385_555604_+|hypothetical-protein
MPEWYGWSADTAERGLRELQRIGLIRKEQHLKEAPLSPTGITVVNEYYVCQPFDKRTLDSRRHTHETKGGEA
>NC_017218.1|WP_100218423.1|553826_554498_+|IS3-family-transposase
MPDDYMVRYRDKRIKTEFGHGRHGPARDAGPYGMIGGDGINDESNKTRQPYCGRQLAETQKGHSPDSAAEGFLGRMKTESVYPEHWEECACDEVLVLIDDYIHWYNHARIKRSFGWMSPVECRQRTKEGLRDCLQENVRSTFFHAECGGEFDDPGIGEPLGVFGVERPLSCKGNSCGNAVVESTCVSASCRPAIPQPAPQSPPSAPSWDVPSADSSATFPDVL
>NC_017218.1|WP_014483510.1|553235_553448_-|hypothetical-protein
MSWDYAELSKSAKNAGGPSSFVGMLLGIGLTAGVALGSTFVLAVQKMMKYKEEAAADTVESSNDKKEIEE
>NC_017218.1|WP_003828338.1|553014_553239_-|hypothetical-protein
MIMGRFGFGSKKKHEEPVEETPIVDDSSSDDDWDDDDSEDESLSVYDAAFIWMSNGKDEDYTFGYTEEELEAAL
>NC_017218.1|WP_014483509.1|549919_551710_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MQAIKHAHERNARIVVSLLKQHGVKNIIVSPGSTNLPVVVSVQHDPYFHVYSCVDERSAAYMACGMAATTGEPVALSCTGATASRNYLPGLTEAYYRKLPVIAITSFNGDWNIGQLLPQTLDRRIVQNDVALVSVDLPVIKDETDALYCNRLVNQAILESIRHGGGPVHINLPTVYDNTMDPGPVPVSRCIRRYMPSDPFPEIGSHRNIVIHIGAHIRFSKEAEQSISDFADRYDAVVLCDHTSNYHGHNRLLGTLTTDNLHSGSAQWDALKPDLVISMGEISGDYPTTNYLKAVHAETWRVSLDGELRDRFDGLTKVFECDTEEFFKRYAAFGEQNGNTPVNRYFAQWEQYDESLRRSLPDLPYSGRWIAEQTAKRIPEKSIMHFAILNALRSWNYFELNPSIRCYCNTGGFGIDGALSTTFGSALAEPNTLHFVVIGDLAFFYDMNSLGNRDMMANIRILLVNNGIGDEMRMPYSTGFRLHGEELPYVCAQGHYRAQNAFDSLAKAWCEALGFKYMSASSKQEYLERLPEFLTTQSDSPIILECHTTPDDDSQAGGALQLLDQDYVNKKKLKDAIKNVVPDSMLRTAKTILSRK
>NC_017218.1|WP_014483508.1|548871_549873_+|glycosyltransferase-family-2-protein
MTGPDKLLTISVAAYNAEPYLERCISSVVSCPDAARLCEIIIVNDGSHDSTSDIAHRFQSRYPQAVRVIDKENGGYGSTVNASLKHATGRYFRLLDADDWVDTEHLSGFLRELCACDVDVALSPYLVCNDQTKEETPVTLSELHAAQAGRFEDLDFSWTHLTMHAMTFRTDLLRQAGVHLDHHVLYTDCEFITQPLRFIDTYQMLTNPLYCYRVGREGQSCDYRQTVRHKDDLKTVIKTLTPLYDEQLPGNKSEFQYSQFLGLYTQLFNACFLPRDAAWVQLRKLCEEMKPLNPRMWDKFLRHRVDIRMALSTHGLTFPLLCVLQRKRLSYSE
>NC_017218.1|WP_003828323.1|547401_548862_+|flippase
MANHRKKPKIHSVKFNVLMNMLLTTSQMLFPLITLPYVSRILSTFGTGAVAYVQSVVLYFSMVALLGIQNYGIKVCAMVRDDIVELSKVVKELLVILLVSTSIVFAVYLLSIFLIPTFSQQRTLFLIFSVGFWLSSFGVEWFYQAIEQYGYITVRNIVFKFIGLILMFLFVHQSSDYIVYGITVLVAGYGMNILNLLRLRKLVDFSIRQRLEYKEHLKAMFWYSIASISSGMYTQTDIVALGFLGNINMVGLYQLVAKIKNVLIKAVNSVGNVMLPRISYYKANGDKQAIINLMAKNVNFIGVVSGALIGGTVLCSDSVVQLMGGKDFSGSVVPLMLAVPAILFSSLNIALGNELIADSREREWAILNVIGFTCSVVYAITFIYFFGVAGAAISNSLTELTVLVLRCSRGKGFIRQILPQTDYHKIGIVSVVSVFIALLLKSQLAFTPGFISLIVNGCCFMGIYCIGLVLAHELFVAEMIHSIIKR
>NC_017218.1|WP_014483515.1|563187_564408_-|methionine-adenosyltransferase
MTEEHRLISAESVTEGHPDKVCDQISDAILDDLLAQDPSSHVAVETSAATGVFLVFGEVTSEGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGAQETAASREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGEVPHLRPDGKTQVTIEYDDNDQPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVLDEVLGSKVPHDNYRQLVNPTGSFILGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLAHKVEIQVAYAIGVADPVSINVETFGTEQGVTRGQIAAAVRKVFDLRPAAIIDELDLKRPIYLKTAAYGHFGRMDVEFPWEKTDKVEELKAAIAGE
>NC_017218.1|WP_003830251.1|564693_564978_-|DNA-directed-RNA-polymerase-subunit-omega
MAFGTDPTPDGLANPPIDDLMQHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREIDEGLLEETLGEDDTNEGN
>NC_017218.1|WP_077320818.1|565145_567008_+|dihydroxy-acid-dehydratase
MTEMRSAKIMSGRVFAGARALYRAAGVSGDDMGKKPIIAIANSFDEFLPGHVHLNKVGRMVSEAIREAGGIPREFNTMAVDDGIAMGHTGMLYSLPSRDIIADTVEYQCNAHCADALICIPNCDKVVPGMLMAALRLNIPTVFVSGGPMEAGTTVLADGTVKSTDLIDVMYATADDSVSDEELLNYEKTVCPTCGSCAGMFTANSMNCLTEAIGLALPGNGTILASHSYRKDLFKRAAQQVVKIAHQYYDDSDDSVLPRSIATKEAFENAMTMDVAMGGSTNTVLHILAMAQSADVDFTLDDIERISHTVPCICKASPSGKWEISDVHRAGGITGILGELERAGKLHTNVHSIDYPTLEAKLADWDIMRPTCTEEAKQMYKAAPGHIISPEPWTHTTLFDSLDTDRVNGAIHDINHPEIHEGGLAVLRGNLAPDGCVVKTAGVPPEIWKFRGPALVVDSQEQAIEVILNDTLKPGMALVIRYEGPKGGPGMQEMLYPTSFVKGKGIGKQVAMLTDGRYSGGSSGLAIGHMAPEAANKGPVALIKNGDIIDIDIEARSVNVELTDEQLDERRRELEAGDGYVAHRDRHVSQALKAYAAFARSADKGATRDPELINKLSGLA
>NC_017218.1|WP_014483517.1|567300_568314_-|methionyl-tRNA-formyltransferase
MLKLVFAGTPDVAVPSLQAFAADSRFEVVGVITRPDAPTGRGRKLTPSPVKAAAMELGLTVIDAKPRSPEFMEALNGLHADIAAVIAYGNILPKSVLDAVPMGWYNLHFSNLPKWRGAAPAQRAIWNGDPTTGADVFKVGEGLDDGPIIASLTVELTGRETSGELLTRLAEEGAPMYVDALAAVGDGTAIFTPQPAEGLEYAHKITVEDARINWADPAEAIDRQIRACTPHPGAWTELFAEGLIADSGEANEESSNLATTAKSLTLHILAAQPADQTNPNTPIDLDPGELKVGKKNVWVGTGTGALELTQVKAQGKKAMRAADWARGARLSPAACVR
>NC_017218.1|WP_014483518.1|568452_569157_-|HAD-family-phosphatase
MKGWPGEPDMDYDVLVADGEAAANAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDEFLDNDISGFYDVNDLMDGGTSTEEAIAIMRERKGDKWADILDYYIKNFRDSLTGIVPGARVLVDDLKAAGIGVWGLSNWEASLFHVAEEQCDILQELDGKLVSGFVKLRKPHKEIYDAALKEFGIKADGALFIDDKAMNIVGSNAAGIRGVRFQDPVKLRELLIANGVNIPDVQ
>NC_017218.1|WP_014483519.1|569306_571616_-|primosomal-protein-N'
MTTSDAQQLTLDGLAPRKRRKRAPAEHTPAEHDPIAQVVLDVQALHLGQTFDYFIDEKDSDAAQPGVLVRVQFGGQRVGGVIWSRTSTSDTPRSSIRYIERVLSPDVLVPASMREDIGLIANAYGGTRANILRFAVPPRVAKVETEQRLTASFQRPVGGSLPDNIQGGFAGHGTLPDGPHPSGSSFEVARSVSEGAAQGYRRIAANYGEANALNDALHGQRFQSFVFDSLPGAQEWQRNMAWMAATSLSAGKSAVVELPTMREVEDLLPALRNYGLKPFSPTPSGGWIGDVAVLNAQMPAADRYRAYLAVALGQVKVIIGTRAVMYAPVEGPALFAILEDAAYQNMDGMMPYPQARGVMRLRAKSHGGVFVAMSNARTVQSQWENTGPGTVETPVSGYSTAIHPLASPLKDATPWVRWLNRDELARLADATIGARVPHTAVRALSKALESGPVLLSIPQDSTSEALSCAKCHRQARCAKCSGPLQLPADRSESAPRCQWCGAAAIHWTCPGCGHERMRVVRVGAAGTAAELAGLFRSVPMVLSSKAQGLVRDVPCKPMIVIATPGFEPRVRPVSNERGAAGHEYRAVAILDAWTSLYALGVDARLDTLTAWMRAVSLCAPRSRGGQALILGETDPAIAQSLMMWDSRILASKDLDERMETGMPPTVAAACVWGRRDAVMTLMQRIGALGGDWAVCGELPGMLGPVPIAQPDTVDARELEATADRVKAVVRVPQSQRAELAIRLHRETARHVASREPGELRFRIDPKDLI
>NC_017218.1|WP_100199056.1|571663_572416_-|phosphoserine-phosphatase-SerB
MSQGFSRIESMMQEDVHFIDKSAESEVGALGGSADSVPTLAEPGLLVMDVDSTLIDEEVIDELGEAAGSGEEIAKVTERAMRGELEFCDALRARVALLEGLPVSVFDAVHDKLHFTKGALELIDTLHAHGWKVGVVSGGFHEVVDKLAAEGHIDYWIANRLEVADGRLTGKVLGEIVCKTVKLHALREWAKQLDIPMSQTVAVGDGANDIPMIQAASLGIAFCAKPKTQLAADEAINDRDLMHVLDYLRR
>NC_017218.1|WP_014483521.1|572436_573132_+|DedA-family-protein
MELATALAANPTPICTTSEGGLIGTITEWLITLMETIGGIGVALAIALESVFPPIPSEVILPLAGFTAARGTLSLPGAIIWATIGSLLGAWTLYGISRWVGLHRINRAADKIPGVSRKDVSKANDWFTKYGTWSVLIGRVIPVVRSLISIPAGFNRMNFLQFTGWTLLGSAVWNTILVSAGYLLGDQWCSIQGALGVFEDVVIVAVVVVIVWFAVKKVRTVVRNRKAQHGE
>NC_017218.1|WP_014483522.1|573185_574760_+|proteasome-ATPase
MGEAENLAELNDRLMAKNHALAEALNRAGKELTKAKSQLAQLAQPPLTFATMVKIDSTHTDEDGVQHASAEVISGTRRMIVPVAANVNASRLAAGSTVVLNEKLVLVEQRDADTVGQIRVVKQILDDGRLIVVDASGNPVLVRRSSALSLTAISQGDRIIVDPSVRLAIELLPNEGDRDLVLEETPDVTFADIGGLDSEIGRIRDAVQLPFQHRALFERYDLKPPKGVLLYGPPGNGKTMIAKAVANALCEGGCDMDGDGSINGREQQVKGVFLSVKGPELLNKYVGESERLIRLIFQRARERAAEGKLVVVFIDEMDSLLRTRGSGVSSDVETTIVPQFLSELDGVESLDNVMVIGASNRVDMIDPAVLRPGRLDVKIRIDRPSGEAAASIVRHYLTDDLPLEQGLDADALSRVLVRDIYTRSERRHLADVRDERGTWNALFLADVVSGASLKNIVDRAKTHAVKASIASGKDVALDATLLGRAVEDEFAETRDSLLDADPVQWARVNGFDAGRVTAIRAVGR
>NC_017218.1|WP_014483523.1|574819_575533_-|HAD-family-phosphatase
MKGWPGESELNIPFNEVIAYDAAAAHARQPIANVIFDFGNVLVDWDPQALFMPRYSEKRIEDFLDNDISGFYDACDRMDAGASPAEGIAWIRETHGERWAEMLAYYFDNFLDSLTGTIPGMRVLVHDIKAAGLGVWGLSNWQRETIGEAENAYEILRMLNGRVISSEVHMRKPDTAIYMKALESFGIDAATTVFVDDRASNVIGANRAGIRCIRFRDERGLRETLIDAGVPIPAVAE

Crispr_ID: NC_017218_3

• CRISPR_ID: NC_017218_3
• CRISPR_location: 787549-787637
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017218_3

Consensus_repeat	Method
GACAAAAATTCAGGAAATAAACGGCTTC	CRISPRCasFinder

spacers of NC_017218_3

>3.1|787577|33|NC_017218|CRISPRCasFinder
GCCCTGAAATACTGTCGCTGACAGTAACTCAGT

CRISPR arrays and Neighbor proteins around NC_017218_3

CRISPR arrays

The CRISPR arrays of NC_017218_3

>merge|NC_017218|3|787549-787637|CRISPRCasFinder
GACAAAAATTCAGGAAATAAACGGCTTCGCCCTGAAATACTGTCGCTGACAGTAACTCAGTGACAGAAATTCAGGAAATAAACGGCTTC

>NC_017218|3|4|787549-787637|CRISPRCasFinder
GACAAAAATTCAGGAAATAAACGGCTTC	GCCCTGAAATACTGTCGCTGACAGTAACTCAGT
GACAGAAATTCAGGAAATAAACGGCTTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017218.1|WP_003830623.1|794935_795862_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223674
NC_017218.1|WP_003830624.1|795880_796885_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|224094
NC_017218.1|WP_003830626.1|799225_800086_-|exodeoxyribonuclease-III	unknown	unknown	gnl|CDD|197336
NC_017218.1|WP_080714918.1|784727_785144_+|alcohol-dehydrogenase	unknown	unknown	unknown
NC_017218.1|WP_015438932.1|787278_787536_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_014483626.1|782637_784569_+|translational-GTPase-TypA	unknown	unknown	gnl|CDD|224138
NC_017218.1|WP_003830627.1|800210_801056_+|DUF3710-domain-containing-protein	unknown	unknown	gnl|CDD|378867
NC_017218.1|WP_014483629.1|786176_787193_+|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|235824
NC_017218.1|WP_014483634.1|796907_798917_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224048
NC_017218.1|WP_014483628.1|785202_786183_+|chorismate-mutase	unknown	unknown	gnl|CDD|270350
NC_017218.1|WP_014483631.1|787788_790647_-|FtsX-like-permease-family-protein	unknown	unknown	gnl|CDD|226957
NC_017218.1|WP_025332341.1|791632_792652_+|tyrosine-recombinase-XerC	unknown	unknown	gnl|CDD|234698
NC_017218.1|WP_003830620.1|790643_791456_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224059
NC_017218.1|WP_014483622.1|776020_777319_+|cysteine-desulfurase	unknown	unknown	gnl|CDD|224029
NC_017218.1|WP_003830628.1|801071_801848_+|DUF3159-domain-containing-protein	unknown	unknown	gnl|CDD|371490
NC_017218.1|WP_014483633.1|792905_794546_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173853
NC_017218.1|WP_014483625.1|780864_781626_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224059
NC_017218.1|WP_014483623.1|777416_777641_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_003830613.1|781642_782248_-|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224609
NC_017218.1|WP_025299899.1|777745_780868_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|226957

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017218.1|WP_003830623.1|794935_795862_+|ABC-transporter-permease	gnl|CDD|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.90971e-109
NC_017218.1|WP_003830624.1|795880_796885_+|ABC-transporter-permease	gnl|CDD|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.95772e-91
NC_017218.1|WP_003830626.1|799225_800086_-|exodeoxyribonuclease-III	gnl|CDD|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	2.74701e-117
NC_017218.1|WP_003830620.1|790643_791456_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	2.47586e-111
NC_017218.1|WP_014483626.1|782637_784569_+|translational-GTPase-TypA	gnl|CDD|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NC_017218.1|WP_014483629.1|786176_787193_+|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein	gnl|CDD|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	2.34275e-65
NC_017218.1|WP_014483634.1|796907_798917_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NC_017218.1|WP_014483628.1|785202_786183_+|chorismate-mutase	gnl|CDD|270350	cd13632, PBP2_Aa-PDT_like, Catalytic domain of prephenate dehydratase from Arthrobacter aurescens and similar proteins, subgroup 3; the type 2 periplasmic binding protein fold. Prephenate dehydratase (PDT, EC:4.2.1.51) converts prephenate to phenylpyruvate through dehydration and decarboxylation reactions. PDT plays a key role in the biosynthesis of L-Phe in organisms that utilize the shikimate pathway. PDT is allosterically regulated by L-Phe and other amino acids. The catalytic PDT domain consists of two similar subdomains with a cleft in between, which hosts the highly conserved active site. In gram-postive bacteria and archaea, PDT is a monofunctional enzyme, consisting of a catalytic domain (PDT domain) and a regulatory domain (ACT) (aspartokinase, chorismate mustase domain). In gram-negative bacteria, PDT exists as fusion protein with chorismate mutase (CM), forming a bifunctional enzyme, P-protein (PheA). The CM in the P-protein catalyzes the pericycle isomerization of chorismate to prephenate that serves as a substrate for PDT. The CM and PDT are essentail enzymes for the biosynthesis of aromatic amino acids in microorganisms but are not found in humans. Thus, both CM and PDT can potentially serve as drug targets against microbial pathogens. The PDT domain has the same structural fold as the type 2 periplasmic binding proteins (PBP2), many of which are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.36462e-61
NC_017218.1|WP_014483631.1|787788_790647_-|FtsX-like-permease-family-protein	gnl|CDD|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	3.04828e-20
NC_017218.1|WP_003830613.1|781642_782248_-|PadR-family-transcriptional-regulator	gnl|CDD|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.65861e-09
NC_017218.1|WP_014483622.1|776020_777319_+|cysteine-desulfurase	gnl|CDD|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	1.48326e-144
NC_017218.1|WP_003830628.1|801071_801848_+|DUF3159-domain-containing-protein	gnl|CDD|371490	pfam11361, DUF3159, Protein of unknown function (DUF3159). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.	1.55787e-71
NC_017218.1|WP_014483633.1|792905_794546_+|ABC-transporter-substrate-binding-protein	gnl|CDD|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	8.08522e-140
NC_017218.1|WP_014483625.1|780864_781626_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.43656e-100
NC_017218.1|WP_003830627.1|800210_801056_+|DUF3710-domain-containing-protein	gnl|CDD|378867	pfam12502, DUF3710, Protein of unknown function (DUF3710). This family of proteins is found in bacteria. Proteins in this family are typically between 237 and 284 amino acids in length. There are two conserved sequence motifs: DLG and DGPRW.	1.80401e-66
NC_017218.1|WP_025332341.1|791632_792652_+|tyrosine-recombinase-XerC	gnl|CDD|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.4061e-129
NC_017218.1|WP_025299899.1|777745_780868_-|ABC-transporter-permease	gnl|CDD|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	2.08449e-15

Protein sequences

>NC_017218.1|WP_015438932.1|787278_787536_+|hypothetical-protein
MTLPRQIPTGARVVVRVTEGVDPTDHRMKFRDYVGHVVSWDGYTLELVRDAAANGSRPAQNVTIHQEQIATLKPIPERPVTPPRP
>NC_017218.1|WP_014483629.1|786176_787193_+|prephenate-dehydrogenase/arogenate-dehydrogenase-family-protein
MVNTVGIIGLGLIGGSLARRLAERGIRVVAWNHRPHPYAQAEADGIFCKSTLAELMDAEPDVVVLCNPLKAMPAMLDSLAPLMVEHSRTTITDVGSVKGMVREQVEAAGLGECYVGAHPMAGNELSGWQAADPHLYDDALWAVTVDSATNYQRFLDVAALITKGVGNRLIVLDDETHDKAAAMISHMPHVVSTALINELSAYPDRNIAAALAAGCWRDMTRVALTDPNRTRAMVEEDALNVEALLRRMAKRLTDMADQLHDGDETDVIRFFAEGSPFRQYKSALTHASDGAAESLPERELTVPESGWQQTLLFSARRGEAIIGFVNPRQAIIQLRPAM
>NC_017218.1|WP_014483628.1|785202_786183_+|chorismate-mutase
MARMKLFYLGPEGTFTHQAAMTAANRFAPLGDFDLVALPDVPAIMQAVESRQGWGVIAWENNVEGYVVPNLDALIDATDVAGFARVSVDVAFNAFTVRGHGIYDCTGGIVSAHAHGLAQCKRFIAEHHLKPEPSSSNAAACRDLQPGQVALGPSICGELYNLDTLAEHVQDFEGARTEFLVIAPRDVVQDLNARAHRNNADDFETIITFIPLVTGPGVLADLLDVLRDAGLNMTSFISRPIKGNDGTYSFIATLDAAPREPKFHAVLEEIAEHGDWAKTLAVYPRCERPSPPVDAWMLPEGGVHVDTEHPSEGWQHTEEARRELLW
>NC_017218.1|WP_080714918.1|784727_785144_+|alcohol-dehydrogenase
MRPWSHRQNVLVKVLITIAAGVASAFVGTFAHRMGAELNIPYGLVLAFLIIGLSTWCARSRMGVVGLALHLIASSLTVWGMAVTTTSGKALIVAGFQGEMPFFAQHAGYIWLYGLILVQVILLVLPARWFSVMPKQSR
>NC_017218.1|WP_014483626.1|782637_784569_+|translational-GTPase-TypA
MAVRGDIRNVAIVAHVDHGKTTLVNAMLQQSHVFSEREEVPDRVMDSNDLEREKGITILAKNTAVEYTGPLAAKYGHPEGITLNIIDTPGHADFGGEVERGISMVDGVVLLVDASEGPLPQTRFVLRKALEAKLPVILCVNKVDRPDARIEEVVGETSDLLLGLADDVQHEGIDLNLDQLLEMPVIYCAAKAGYASVNQPADGGLPDNDNLEPLFEAIISTIPAPEYEEGAPLQAHVANIDSSDFLGRLGLVRIYNGTLEKGKTYGLSRVDGSLENFRVSELLRTQGLDRIPVESAGPGDIVAVAGVNDIMIGETIVDPNDPKPLPLIHVDDPAISMTFGTNDSPLAGTEGKDHKLTARMIKDRLDRELIGNVSIKVLPTDRPDAWEVQGRGELALAVLAEQMRREGYELTVGRPQVVTKKIDGVVNEPMENTTIDVPEEYMGTVTQLMADRKGRMDGMTNHGSGWVRLQFTVPSRGLIGFRTALLSATRGTGISSSLSAGYAPWAGEITIRQNGSMVSDRQGVATPYAMQRLQARGNFFVEPQSPVYEGQVVGVNNKPDELDVNITLAKHMTNMRSATADVLETLTPPIKMSLEESLDFANEDECVEVTPESIRVRKIILGREDWYKWRAKQRRQNAAQQGK
>NC_017218.1|WP_003830613.1|781642_782248_-|PadR-family-transcriptional-regulator
MAIREALLALLERGPASAYQLKKDFDRTIGLTWPLNMGQVSTTLQRLNRDGLIEETAPTTSGSNDVGTAAAAPLWRLTNSGAQELDRWWRSPITPEQRGRDELVMKLAVAVEIPGLDVSELIQHQRHALQQLLHDITRLRRQTPPTELATRLVLDHHIFITEAELRWLDTVDETQLRAQLAQHPVSAPLTASSAALTATIQ
>NC_017218.1|WP_014483625.1|780864_781626_-|ABC-transporter-ATP-binding-protein
MTSPVLSSLPQSSPCALELHDVTHVHGKDARRVTALSHANLTLRPGEFVAIMGPSGSGKSTLLNLAGGLDVPTQGHVLVEGRDLATLSVAERAAIRRKSIGYVFQDFNLLPSLSAAENVSFPLELDGWNPRKAREAAMQSLNEVGVADMADRRPEDMSGGQAQRVAIARALVGPRRLLLADEPTGALDSNAGMTILEVLRTRADRGAAVLLVTHEPRFAAWADRTVFLKDGRIIDETGSSNMDDLLNLEERGA
>NC_017218.1|WP_025299899.1|777745_780868_-|ABC-transporter-permease
MMARAALNNLANATVGRSAQIPHAARPSLGARCNRYRAALRLGWRDALRHKARTLLSLLLVMLPIAAMVASIGMTTTIPPTRSRALATIPADTQAVITATARPRTGQPFRQSPESGGVWQDDPSQQPASAAELAKILPQQDRLLPYWQSPELIAITGTALQPGEQTKAGIDVKSGNDIDLNAASTATMTEASPEALQRMLPKLVKGSAPQNNTQIVISRTLADNLGASLGSTVTFVAPPFDGWMSLDGRIGEAVADTQRAWTVSGLTDESEAAAWGLEGWMSAILESDGVGVDGHYLVVGPEPVTWAHTRSMNLLQAIVISRHVLTDGYPPASQLYPIQIDAATMLNHMVTVVITMLVGMLLVLFLVTPAFTVSADQSRRVLGLAAASGAAPCDLSRIISSQGLVIGAIGGVLGSALGFTLTLAAGPAIGALRGSTPLEILHGFSWGSLPMGIVTAIIIGFAATIAPARHVARMHPVDALKDRPTREEIGYGESANGVDTKLRRNPLRLLRVAVGPILVLAAIVCAALSLTLPLPTLADHNPGAVPAGTEAHMALLVATILLAVIGLALSIRTFARWCGKASSQLNIGARLALRDAAEHHRRFVPAACAVLITMCIASYTLVITGSMVADQRNSTMTMTYGPSGMAIGADVHVSNEFDRAVVSDAIRRLGKETPIRAHYPVYTEDVKRWSKLNDTTEVDSDKLNAEHGYMYAAALLPAGHTCDNPTIQEQPDTSTWVGQDAASALYPNVPIRCVPIDRSHQPTYSNILPSFRGVNLIMDGNAMRLSGFPNADEAAQVLDAGGVVVGDAGTIDAGGMVRVAISPNPAIANESQATHIEKRKAIYVRGAYPLVMSPATAQALGIKQLQYLGEYLNFAGGNSPITVKKASAYAIENLPLASTSTDGNRLPWGDNMALVPIGLLALLALMATLVSLLLARTQAQRDMATMVAVGAPPRFLRRYGLTQAAVILLAGAPVGVVSGVALGWLHVAWNRRIGVDGHWLETVPIWGLQAALAFGVVATGLLVAWLVTKPPRNLTRRSLD
>NC_017218.1|WP_014483623.1|777416_777641_+|hypothetical-protein
MSTTTSAQPAQLTRNERLDRLPFNKAHRKLLVASGVGWAFDAMDVGLVSFAAAFILACIAALCLPERKGLNLED
>NC_017218.1|WP_014483622.1|776020_777319_+|cysteine-desulfurase
MADTPNTSSEAGELYLDAAATEPVSPAVLEAMTPFLTDAYANPASVHQPGKTAARALDAARASFAAALGARPDDVIFTSGGTESDNLAIKGIAMARMRQLGLQPFYGLAEDDGEQFGTDLADPSALSQTGEQTTNHRPRIIISAIEHPAVAQSAAWLHEWFGFDVVHIPVDAQAHLDLDALEHELDGEAGERTALVSTMLANNEVGTVEPVEELVRIAHKHGVPIHVDAVQAAGQIPIRFRDWDVDALSVSGHKFGTPKGLGALLVRGRTSIEPVLSGGGQERGLRSGTQNVAGAVALAIGLNESNARMQAHYRELVASRDMLIDAVRRVAPRADLTGDPERRLPGHASFIFPGVTGEALLVDLDARGIAASSGSACAVGRHEIPPTLLAMGLEPSIAKSALRMTFRTPLTREQVERISLAIEESYTDLTRY
>NC_017218.1|WP_014483631.1|787788_790647_-|FtsX-like-permease-family-protein
MIKIGLRDARAHFGRFVMSIIAIALGVSFVVGSFCFREMMNNQVSDMMGTSADHDVYVRGSKEVKSDSSGLMAASSSSKTYNTINVDLASTIGDVKGVKSAEVVYSVSGTVLVGKDGAAVSTMGAPTLAVGFGKDVPWRSATFTSGTDPTSDDEIALHSFAAEKANLKVGDKTKVVYPDGPKDVTVTGIFDLDSSLAGAIIIDIPPSLAKTYATQQSDDPDKTDQIGIYGNLKTPLDEQAQQELADRINKALPAGSKAHAITGNQLRDESTQSAQEALGFVQPLILIFAVIALFVGSFIIANTFSMIVRESMRGYAVLRSIGASPAQVFTTVIVQAIVLGVVGSGIGIGLGWGMVKGIVAMMGQMGTPMTGSSNPSVSDMLVGLAVGLIVTLIGAALPASRAAMAPPIQAMNETVNPEKPVLTRGIIGTTMIVVGALTWAWTCRIAVADGDPTLIGWLNDFASWTGTGWPLGVGAALIVIGVIVAGPAWVSPAGAVLGWIPAHVFQVTGRLATRNLSRHKRRTSNTAAALFVGVAIVSCLSVVATSAKASVNDIVDTGLKADFSISSAASGQIPDNAVEAIKGVDGLKSVSSNRMIFGAKYDGKQVKGMTFAAQDSLFTDVFAPEIIAGDANKALRGGELVVGEDIADDQGWKVGDTVKVSTENTTVDEEATAQAQADYQTQVQAQIQSLTEEAQKLALAGDAAGAQAKSDEIQQVTQQAQNVDPATLVKTKQVTVIKKLKVGAIISNSVYRSCVFVNDDLGDQLGTKQTMFTMQMYLVAKPGENLDKLEQRIKKAVKPYYVISVMNRDEYKSTMGSMVDQILLVLYALLALSIVIAIFGIVNTLALSVSERTKEIGLLRAIGTSRGQVRGMLGIEASIIAVFGTVMGMVVGVAAGAVIRAVYEADGLSVLGIPWDQLGVFLVLSILVGLIASVSPASRALKQPVLDAVASE
>NC_017218.1|WP_003830620.1|790643_791456_-|ABC-transporter-ATP-binding-protein
MARHSAKGVAQSIEQAEEQHDHVVARAVDLTKTYGDADSQVVALDHVNVEFQRGQMTAIMGPSGSGKSTLMHCMAGLDQPTSGKVFIEGLEVSSMGQKQLTDLRRAQIGFIFQSFNLVPTLCAEENILLPLQIAKKPIDRDWFKQVVKVVGLEKRLTHRPSQLSGGQQQRVACARAMMARPSVIFADEPTGNLDSRSSREVLGFLKQSVTEYGQSIVMVTHDPRAASYADRVLVLADGHITQDLDHPTYEQILEVFADDGADEAGKVAQA
>NC_017218.1|WP_025332341.1|791632_792652_+|tyrosine-recombinase-XerC
MRFSSDVDSFISYLRANRGLSANTLKAYRCDIEACLHLFELRGVVSLNEITLNDLRSWMATESHNHARSSMARKTVAVRGFFAWGYEHGVVGVNPAATLMTPSIPNTLPTVLTESQAEQLLDCAEHSEALQRKNRDISNDFSADGPHSARGRSADRAREIAERQRDVAILELLYATGIRVAELVSLDIRDVDFSNRTVRVTGKGNKQRVVPFGLPAEQALQDWIDYGRPALARLAIEKAVPPNGISSDEGALFLGMRGKRLNQRVAREIVHKAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA
>NC_017218.1|WP_014483633.1|792905_794546_+|ABC-transporter-substrate-binding-protein
MKKKALAFAAMACSVAMLLSACGGSNSNAASGDTAGSNIITAYNSEPQNPLIPGNTNETGGGKPVDLLFSRLVSFDKDGKASNEVAESITPNDDATQYTIKIKSGWKFTDGTPVTAESFTKAWSYVANAKNAQKCSSFFSAIAGYDDLQKDGLKGDEQLSGLKVVDDTTFTVDLNQSDSVFPIKVGYSAFAPLPESFYKDPKAFGQKPVGNGPYKLDHWDHNKEIALVKNPDYKGNEQPKNDGVTFKVYTDDSAAYRDIQAGNLDVMDSVPAAFTKTFKTDKKVQAYSEAGSVIQTFTIPSSLDHFKNDEEGQLRRQAISMAINRDQLIDKVLNGNATAATEFTSPKTPGYSDSLKGADNLKFNASKAKELWAKADAISKYDGQLTFSYNADGGAKPLYDAIVNQLKNNLGIDAATNPIPTFQEFRDAVTNRQMKGAFRTGWQPDYSSAENYLWQLYSTAAADGNGSNDGDYKNPAFDDMCKQAAAAKSVDDANKLYQQAEEILLNDLPAIPLYYSNANGAASLNVKSGYAFDWQNLPTYTEMSKK
>NC_017218.1|WP_003830623.1|794935_795862_+|ABC-transporter-permease
MGKYLLRRILQMIPVVLGTTLLVYALVFALPGDPVKAMFGDKPVNEAVAAQIRAEYHLDQPFIVQYFIYLKNALTLNFGDTFAGQPVLDEIARAFPVTIRLGLMAFVFEAIFGVVFGIISGLKKGKWYDTVILIVSLLLISVPTFVTGFVMQYVFGIQWAILPVTAGADPGFLDLLMPAMVLGSASMAYIIRLTRSEISSNIAEDYVRTARAKGMSNGQVMLRHVLRNSLIPVVTYLGQDIGGLMGGAMITEQIFNIHGIGFLTYQSILKGEANLVVSIVTLLMLIFVVCNLVVDMLYAALDPRIRYA
>NC_017218.1|WP_003830624.1|795880_796885_+|ABC-transporter-permease
MANETTENELNQTGEPGTEYFMETLPGQDRYVAPLEETPLQDVDSVDESAPATSMWADAWRTLRRNPLFIISGLLILFIIVVAIAPGLFTKQDPNACDLGNSLSPASAGHPFGYDLQGCDVYTRVIYGTRTSLSVGVLSTLLVVIVGTLIGAVAGFFGGWVDAVLSRINDIFFALPMLLGAIVVLQMFKTSKSIWKIVLVLTLFGWVGVCRIARSAVLESKNLEFNTASTALGSTPARNLFRHILPNSLAPIIVIATTSLASYIVAEATLSFLGVGLPTTTVSWGGDISSAQTNLQTDPMVLFYPSAALAITVLAFIMMGDAVKDALDPKSRTA
>NC_017218.1|WP_014483634.1|796907_798917_+|ABC-transporter-ATP-binding-protein
MTDNTNATMLAMQKEHGPLLEVRNLAIDFTTDTGKPVHAVRDANFTVYPGQWVAIVGESGSGKSTSAMAVLGLLPGTGHVVNGSIKLDGEEIAGAKQSEFDKLRGTKMGLVPQDPMSNLNPVWRIGTQVKEALKANNMDVDHEKRSALAKALAGDEVEVKGNDDETFLGAKELPELMTEAKKALTEAGVSGEAFDKAVARFTNEWVPGSETRWRVADDLIKAGVADDQAWYLAKKYVIGSTMDDRIAGLLSEAGLPDAATRARQFPHEFSGGMRQRALIAIGLACRPDLLIADEPTSALDVTVQKKILDHLHMLTDSLGTAVLFITHDLGLAAERAQHIVVMYKGQVVESGPSLEVLQHPQHPYTKRLVAAAPSLASQRIISAKERGENADALLDHHVAGERTLEKSEHIITVDHLTKEFKLPRKKEMFKAVDDVSFSVKRGTTLAIVGESGSGKSTVANMVLHLLKPTSGKVFYEGRDTSTFKAKDLLGFRRHVQPVFQNPYGSLDPMYSIFRSIEEPLRIHKIGDKKSRANRVKELLDMVEMPASVMGRYPNELSGGQRQRIAIARAMALDPDVIVCDEAVSALDVLVQDQVLCLLNDLQAEKGLSYLFITHDLAVVRQIADEVVVMQHGKLVEHATTDEVFDHPQKQYTRDLLDAIPGGKLQLGLD
>NC_017218.1|WP_003830626.1|799225_800086_-|exodeoxyribonuclease-III
MTITITTSNVNGIRAAKRKGIEDWAGKHAPDVWCMQEVRAPQDDVDSIFDEFGFEYATAGKIDAPADLHTMNEVCRVKGRAGVGLLTDLEVLDKRYGLPGLSEDVDSGRWIETDVKTPEGYTITVASVYIHAGNTDDPTKMEQKYRFLDTMLARMGALRDEAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDKWLDEYEFVDVMRSLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPTYDKRWSDHAPLTITYEV
>NC_017218.1|WP_003830627.1|800210_801056_+|DUF3710-domain-containing-protein
MGLFGFGKKKDKKETEPAVELVDEDKVAAEAANAAAKAESAETVLAEPSSEYVGRGEERGPWDVNDEEVPDYDDYLDLGAYYLPFMQNIELRIKANRATQQVLGSTITYGKSSLEIEAFAAPKTLGLWDDVRADLIEANKAASEVEGVFGTELKLPVNVKGGKTVNTRIVGVDGPRWMLRGIFSGVAATDPDSPETEALNKFFADIVVERGEEPLAPRDLIPMHPPVAPAERKAAAEAGEENGKEHFKDIPDNKPKGPLSQDQQTEVKTTLSRGPMFSEVR
>NC_017218.1|WP_003830628.1|801071_801848_+|DUF3159-domain-containing-protein
MADNKRTGLSALADAGNEGEDFSVIDAIGGPRGVIESMLPGVVFVVLFVVTSNLNLTIAVSAILAVLQVIARLIQRQSVMGAVSGLVAVGICLIWAWQTHEARNYYIFGFITNAGYAALLAVSLIARVPGLGLVVEFIRSLPTEHFKAWFNDWMSDKALKRAYMIITGLWVGLFLLRLAVQVPLYLTNHVAALGVARLLMGIPFWALAIWVSYLIIATPMHRHKAVATQNVTQSESGSAAEAVSEPVAGKTGKDSDAS

Crispr_ID: NC_017218_4

• CRISPR_ID: NC_017218_4
• CRISPR_location: 999316-999474
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NC_017218_4

Consensus_repeat	Method
ACTCCAAATCGCCCCTTTATACCTGCAATC	PILER-CR

spacers of NC_017218_4

>4.1|999350|40|NC_017218|PILER-CR
GCATAAATTGCCCTTATTACCTGCAATTTCCGCTCACAAG
>4.2|999424|33|NC_017218|PILER-CR
TATGGAGTTGAGCCCGAATAGCGCTGTTCAGAT

CRISPR arrays and Neighbor proteins around NC_017218_4

CRISPR arrays

The CRISPR arrays of NC_017218_4

>merge|NC_017218|4|999316-999474|PILER-CR
ATCGGCTCTAACTTGCACCTTTATACCTGCAATCGCATAAATTGCCCTTATTACCTGCAATTTCCGCTCACAAGACGGCCCTTTATACCTGCAATCTATGGAGTTGAGCCCGAATAGCGCTGTTCAGATACTCCAAATCGCCCCTTTATACCTGCAAAC

>NC_017218|4|3|999316-999474|PILER-CR
ATCGGCTCTAACTTGCACCTTTATACCTGCAATC	GCATAAATTGCCCTTATTACCTGCAATTTCCGCTCACAAG
ACGGCCCTTTATACCTGCAATCTATGGAGTTGAG	CCCGAATAGCGCTGTTCAGATACTCCAAATCGC
CCCTTTATACCTGCAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017218.1|WP_014483748.1|991557_992655_-|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl|CDD|234621
NC_017218.1|WP_003829353.1|988391_989276_-|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl|CDD|237134
NC_017218.1|WP_003831847.1|1002244_1003195_-|L-lactate-dehydrogenase	unknown	unknown	gnl|CDD|133427
NC_017218.1|WP_014483749.1|992915_995024_+|transketolase	unknown	unknown	gnl|CDD|223100
NC_017218.1|WP_003829342.1|1003286_1003535_-|preprotein-translocase-subunit-SecG	unknown	unknown	gnl|CDD|235881
NC_017218.1|WP_003829339.1|1005916_1006867_-|DNA-binding-protein-WhiA	unknown	unknown	gnl|CDD|273194
NC_017218.1|WP_014483752.1|1004552_1005758_-|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NC_017218.1|WP_015438800.1|1003598_1004402_-|triose-phosphate-isomerase	unknown	unknown	gnl|CDD|234589
NC_017218.1|WP_014483744.1|984552_986586_-|threonine--tRNA-ligase	unknown	unknown	gnl|CDD|237050
NC_017218.1|WP_014483750.1|996547_997885_+|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl|CDD|283235
NC_017218.1|WP_014483754.1|1007988_1008969_-|shikimate-5-dehydrogenase	unknown	unknown	gnl|CDD|234703
NC_017218.1|WP_155115186.1|987377_988241_+|PAC2-family-protein	unknown	unknown	gnl|CDD|378251
NC_017218.1|WP_003829348.1|995097_996201_+|transaldolase	unknown	unknown	gnl|CDD|235117
NC_017218.1|WP_025262979.1|989426_990218_+|phosphotransferase	unknown	unknown	gnl|CDD|225547
NC_017218.1|WP_003831182.1|1009204_1011622_-|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl|CDD|234792
NC_017218.1|WP_003829346.1|998057_999242_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_014483747.1|990357_991503_-|molecular-chaperone-DnaJ	unknown	unknown	gnl|CDD|237654
NC_017218.1|WP_003831845.1|999742_1001278_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|237361
NC_017218.1|WP_003831846.1|1001396_1002248_-|HAD-family-hydrolase	unknown	unknown	gnl|CDD|369792
NC_017218.1|WP_003829338.1|1007023_1007989_-|RNase-adapter-RapZ	unknown	unknown	gnl|CDD|235450

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017218.1|WP_014483748.1|991557_992655_-|heat-inducible-transcriptional-repressor-HrcA	gnl|CDD|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	9.8353e-129
NC_017218.1|WP_003829353.1|988391_989276_-|undecaprenyl-diphosphate-phosphatase	gnl|CDD|237134	PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed.	2.13357e-124
NC_017218.1|WP_003831847.1|1002244_1003195_-|L-lactate-dehydrogenase	gnl|CDD|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	2.30345e-157
NC_017218.1|WP_014483749.1|992915_995024_+|transketolase	gnl|CDD|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NC_017218.1|WP_003829342.1|1003286_1003535_-|preprotein-translocase-subunit-SecG	gnl|CDD|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	1.18957e-12
NC_017218.1|WP_003829339.1|1005916_1006867_-|DNA-binding-protein-WhiA	gnl|CDD|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	6.32855e-76
NC_017218.1|WP_014483752.1|1004552_1005758_-|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_017218.1|WP_015438800.1|1003598_1004402_-|triose-phosphate-isomerase	gnl|CDD|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	7.9164e-125
NC_017218.1|WP_014483744.1|984552_986586_-|threonine--tRNA-ligase	gnl|CDD|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_017218.1|WP_014483750.1|996547_997885_+|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl|CDD|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	3.55232e-124
NC_017218.1|WP_014483754.1|1007988_1008969_-|shikimate-5-dehydrogenase	gnl|CDD|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	2.49129e-50
NC_017218.1|WP_155115186.1|987377_988241_+|PAC2-family-protein	gnl|CDD|378251	pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.	2.56984e-40
NC_017218.1|WP_003829348.1|995097_996201_+|transaldolase	gnl|CDD|235117	PRK03343, PRK03343, transaldolase; Validated.	0
NC_017218.1|WP_025262979.1|989426_990218_+|phosphotransferase	gnl|CDD|225547	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown].	2.58345e-43
NC_017218.1|WP_003831182.1|1009204_1011622_-|excinuclease-ABC-subunit-UvrC	gnl|CDD|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	1.34394e-136
NC_017218.1|WP_014483747.1|990357_991503_-|molecular-chaperone-DnaJ	gnl|CDD|237654	PRK14278, PRK14278, chaperone protein DnaJ; Provisional.	2.86203e-146
NC_017218.1|WP_003831845.1|999742_1001278_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|237361	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional.	0
NC_017218.1|WP_003831846.1|1001396_1002248_-|HAD-family-hydrolase	gnl|CDD|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.2049e-63
NC_017218.1|WP_003829338.1|1007023_1007989_-|RNase-adapter-RapZ	gnl|CDD|235450	PRK05416, PRK05416, RNase adapter RapZ.	3.59791e-156

Protein sequences

>NC_017218.1|WP_003829346.1|998057_999242_+|hypothetical-protein
MNTSDRQIMETDRNRELGLIPAMVMAIIAALSGAGVSFAPLYERIWGGMMLHPNCPTIGRMTYYLSGQATGDYGACVTSPLWFLAVTALSVVAIICLTVAGVQGFARHRLRTVICVFLAAVAVAFILVLSANTKIVMLWAIHAATWLVYAILAAYSRNSTSIQQQHIADLTNLTGSDKSASERGGWTLVTRLLLVWQIGVMPVLVTEYSVSDEVNSTGGVTIACGLGLAAYALVHLISIDTPRDNVGSALPTIRDIRPVSVHKLFRVISINASAVSHVSVPLGLFWAVITFLTYSYGTGGHTDFCPALAATNNAGLIAFCTGSGPLIVLAVLLYVLPIFSLVSAIATVMATTGSMSNSHNSANSAGFQNKAAIFYLLLTAVLSATAFIIAFTLA
>NC_017218.1|WP_014483750.1|996547_997885_+|branched-chain-amino-acid-transport-system-II-carrier-protein
MNKLVARQRLVMTFTFFSMFFGAGNLIFPPFVGAQAGSATMPAAIGFIVSAVGLPILGVLAVTFAGGFDKLAGRVSPKFALFLGVAIMLTIGPCFAIPRTATTSFEMMVAPFVPTSYDWLAQLIYSLVFFSLAFLFAQHPEKLSKVLGRFMGPLLLVLIAVLFIACLVHGIGTPAKPMGDYSTNQIARGFLDGYQTMDLLAALYFGIVISANIRAQQVDDESLVQKETAYAGLGTGVLLIVIYGALSYVGVVSGAIASIDPAKDTGATVLTNLTSSLFGTFGTAFLGVVFVIACLNVCTGLICTCATYFHTRFQTVAGRTLSYRTWQIIFTVFSFIVSNAGLSAIIKVSVPVLSALYPIAIVLVLLALTHKKLGARFPRVYFWTVLLVGIASFATCISSLAAVFGGSIGWLDAALAMLPLQQYQLGWVMPAIIGLAIGIADAPRR
>NC_017218.1|WP_003829348.1|995097_996201_+|transaldolase
MTEATQRTSDNGVSIWLDDLSRSRIESGSLQDLIANKNVVGVTTNPSIFQKALSQVGPYDAQLKELGKVDVETAVRELTTTDVRNATDIFREIAEATDFVDGRVSIEVDPRLAHDTENTAKQAVELWEKVNRPNAMIKIPATLEGLPAITATLAKGISVNVTLIFSLERYEQVIDAFIEGIAQADANGHDLKHIGSVASFFVSRVDTAVDKLLEANGSDEAKALEGKAAVANARLAYELFEKKFAEDPRWADLAAKGAKVQRPLWASTGTKNAAYSDCKYVDELVAKHIVNTMPEKTLNALADHGNGAPSIEGTYEESHAVINKLAELGINLKDVTDKLEADGVAAFIKSWDSVLADVQSGIDRVNA
>NC_017218.1|WP_014483749.1|992915_995024_+|transketolase
MTEFKETELDERAIKMAKALSADAVENAGSGHPGSPVSLAPIAYTLYQHFIKHDPNDPNWEGRDRFILSGGHASLTQYVQLYFSGYGLTLDDLKHFRGGADTRTPGHPEYGLTPGIEMTTGPLGQGFASAIGFAYGERFQRGLLDPETPKEDSPFYHKIWAICGEGDIEEGISGEAAALAANQKLGNVTVIFDANRIQIEGDTNLVLAEDVLKRFQAYGWYTDEFSFIQPDGSYKEDVEGLADVIAKAEAAAPDQPKLIKVDTLIAWPTPGKTNDPSSHGSKLGAEAVAGLKEVLGYDPAENFHVDEEALAHARKVAERGLEAHKEWDEKFDAWRKANPDKAALYDRIKAGELPEGFDKAIDDLEATFEVGKGVATRGASGSVLNAIAAVMPELWGGSADLGGSNKTDLKGAATFAPAECATKQWPVCNEFGRQLHFGVREFTMGCITNGILLGSHTRPFGGTFFMFSDYERSAVRLAALMEIPNLYVWTHDSVAVGEDGPTHQPVEHLASFRAIPQLEVVRPADAFETAEAYRYFFEKKNTLPAAMVLSRQGVPVLAETAAKAKDGVRKGAYVLVDTEGTPDVILMATGSEVQLAVKAAKTLAEEGVKARVVSVPSLEWFEEQDAEYKEAVLPAGVKARVSVEAGVAMPWYKYLGSYGKPVSIEQFGLQGDGAQNLIDLGITAEHVVEAAKASIAEVEAAK
>NC_017218.1|WP_014483748.1|991557_992655_-|heat-inducible-transcriptional-repressor-HrcA
MTQSRRMLVLRAVVEDYIRSQEPVGSAALSKERDLGVSSATIRNDMAALEDEGYLIQPHTSAGRVPTEKGYRYFVDRLATVVPLSEAQRRGINSFLSGSVSLKDALQRSARLLSEITGQVAIVASPSLSKATLRHVELVPVAMSTLLAVVITDTGRVAQHGLTVSAMPTADDINRLSSAVNEQCNGQSLSSASETVRALGGGTGFETGREAADALADAFASMALDERANELYMSGTSHLAHSRSLTDLAPLFDALEEQVVLMKLMSNLSEEPSATGVGVSIGSESHTPELLHASVVSSGYGRSTSPVANDSERNETSPDQDSANEPIAFVGSIGPTHMDYAATMAAVRAVARYLTFFVSESGSGD
>NC_017218.1|WP_014483747.1|990357_991503_-|molecular-chaperone-DnaJ
MADYYETLGIDRNARDDEIKKAYRKLSRKYHPDIAGPEFEDKFKEVNNAYDVLSNPDKRRMYDSGVDPNDPNAGAGGFSGAGFGDMGDVFSTFFGSAFGGGSQGPVPRTQPGRDALASASIDLKTAVFGGTAHVKINTFSLCQECGGSGAQGGAQPVTCPDCHGQGFMQKVVRTMLGQMMTSAPCERCEGHGTIIQNPCPSCMGHGRVRTTRNVGVTVPAGINDNARLRLANQGEVGEGGGAAGDLYIDIRIKADKQFTRDGDDLHCWIQVPMSWAVLGHDLSIDTFDGEQTVSIPAGCQPEDTVTLKGLGVTNIRNKDERGNLVAHVNVLIPTKLSESERGLIEQFAASHDSDATHVSQASRPQTGQKKGFFSKLKDALS
>NC_017218.1|WP_025262979.1|989426_990218_+|phosphotransferase
MSTYRKSRAFAPQRFFECEGRGLQWLGAAHAQGGPRVVQVYDWGKDYLDIERVNSSSPTAKAALEFGAALARMHDAGAEYFGSAPEGYDGTCYFGPLQDPVKMDTGEWTDPISYFADGRLRPMVELGVKRGELDQRDVDLTEKVIEALPDIMGRAAEDTPARIHGDLWSGNVMWTADSGQTEAVLIDPAAHGGHREEDLAMLHLFGMSYLTQITEGYQSVHPLKAGWQDRITLWQLYPIAGHCVFFGGGYVSEYRSMCLSLLK
>NC_017218.1|WP_003829353.1|988391_989276_-|undecaprenyl-diphosphate-phosphatase
MNLFQAIVLGIVQALTEYLPVSSSAHIRIVGDLMLGSDPGAAFTAIIQIGTELAVILYFRHDIANILTHWFACLFGKNGKDWKARMGRGDNYATLGWNIIVGSIPIVILGFTLQNVIETTLRNLWITATVLLLFGILLWVVDARAKQTKTMDDMTYRDAFLFGLGQSMALIPGVSRSGGTITVGRALGYEREAAVRLSFLMAIPAVFGSGLLEAVKAVKDYKTDAMFPGWGPTLIAMVISFILGYIVIIGFLKFVSTFSYKAFAIYRIALAVVVALLLIAGVLPAIDPSVAAAA
>NC_017218.1|WP_155115186.1|987377_988241_+|PAC2-family-protein
MTSCPRYSRGMSEDANTPSSVMIAAFEGWNDACQAASNVVRYLVKHYESREIRHIDCDAFYDYQVSRPMLCHVSGRTNLIWPQTTFYEIVLDEGHRIFAQIAPEPNYRWKEYCSQSLAIAEELDVDGVITLGSMFSDCPHTRPLPISVSDGNCQCEGDREYNGPVGIPTVLDIFAAERGMFHASMWVSIPQYLGSDECAAGTMRLLDALGHRIGFSFDVSELERKAEQWKSQASVLVRCNEQLQDYVTHLEHDYDLKQKADAEASLGAPQAEQLVKEAEAFLRQMGS
>NC_017218.1|WP_014483744.1|984552_986586_-|threonine--tRNA-ligase
MAQATISITVNGEAKEVEATTTGVELFAEDKNIVAVKLNGENRDLYTPLADGDTVEPITLDSEDGLAIMRHSATHVMAQAVQEVYPNAKLGVGPVIKDGFYYDFQVDKPFTPEDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEADQPFKIELIEDKEAHLDPAAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKIERSAAAYWRGSEKNPTMQRIYGTAWANKEDLKAYQTRLEEAAKRDHRKLGAEMDLFSFPDEIGPGLAVFHPKGAAVINAMEDYSREMHRKHHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDADGNVTKPGFDYYLKPMNCPMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMKDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDLVADPGGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFQLEYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGVPVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGEEDMNNNAVSFRFRDGSQLNGVPVDKAREQILAVIAKRVQVNSADDFNAAVAE
>NC_017218.1|WP_003831845.1|999742_1001278_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MSVSAFAERLRNAMNSRELKQVDLVHAAERRGVKMGKSHISQYVAGKTMPREDVLLFLADELDVDANWLRGRSSETKLNSDAQPASHIDTPSGAPTSAETEIPAARRRTFGKSHKLDDVLYDVRGPVVDEAARMEQAGTHVLKLNIGNPAPFGFRTPDEVVYDMAQQLPETEGYSASKGLFSARKAIMQYAQLKNIPNVTIEDIYTGNGVSELINLSMSALLDSGDEVLVPSPDYPLWTACVNLAGGTAVHYLCDEKSDWYPDIDDMRKKITDRTVAIVLINPNNPTGALYPKEVLQQIVDLAREHQLMIFSDEIYDRLVMDGLEHISIASMAPDLFCVTFSGLSKSHMIAGYRVGWMILSGNKAIAKDYIEGINMLTNMRICSNVPAQSIVQTALGGHQSVHDYIVPGGRIHDQRDYIYDALNSIPGITAVKPKAAFYIFPKIDIKKFNVHDDEQFALDLLHDKRILITRGGGFNWHEPDHFRIVYLPRIEVLKDATNKLSDFLSYYWQS
>NC_017218.1|WP_003831846.1|1001396_1002248_-|HAD-family-hydrolase
MTTTIKTTTRPELLVADLDGTLLHDAEVFEDRFITQRSIDTIARAHDAGMKFAIATARPVSTGLQFAEKLPVDAVIYLNGALIDFDPANSDFDMLTSDSSQQSENHLIKIGFSSQRACEVCLFLLDRMPNLKIGIVMNDVRYTNFDVRAYWKTQAFRYTNFHDVPDGVADKITIFPEPEQWNELRALIPPDFDISISEGVMWMLMNPQANKEHALRLLCDRLDVPLEQTAAFGDDLIDINMMSESGRGVAVANANPKVLSIADEICPPNNEDGVAQWIESQLR
>NC_017218.1|WP_003831847.1|1002244_1003195_-|L-lactate-dehydrogenase
MVTMNRNKVVIVGTGQVGATAAFSIVTHGLCNELVLIDHFAAKALGEARDLDDGSEFQDRHVKVRAGDYADCRDADIVVITVGRKPPANSNRMAELGFTVGLVGEVVDNVMASGFDGVIVMVSNPVDVMAWYAWKRSGLPRTQVLGTGTALDTSRLKTIIGEETGLDPRNVSGFVMGEHGDSQFTAWSTVSLGGKPFARFLADNQDRFASVSTAEVEEKTRTRGDEIVAAKGGTNFGIASTVAGIVQTILWDERRIVPVSTLLDGEYGEHGVFLGVPTELRANGANEIVELELSNEEMAKMHHSAELVRDHCKGLL
>NC_017218.1|WP_003829342.1|1003286_1003535_-|preprotein-translocase-subunit-SecG
MTALKITLQVIVVLLSFVLTLLILMHKGKGGGLSDMFGGGLTQNAGTSGVAEKNLNRWTVIIALVWVALIIGLDMMTKFNLG
>NC_017218.1|WP_015438800.1|1003598_1004402_-|triose-phosphate-isomerase
MASKRIPLVAGNWKMNFDHLEATYFVQKLVWLLRDAHFDFKRCEVALFPSFTSLRSVQVLVEADKLRLTYGAQSVSVTTQGAFTGDVSADMLAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAVGMQPILCVGESYEERRKGIELDFAVGQVRDVTRDLSDEEAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRDDLKTTFGQKVSDSVRILYGGSVTSKNAAELISQPDVDGFLIGGAALDVEELSKIARLALKTTSSRS
>NC_017218.1|WP_014483752.1|1004552_1005758_-|phosphoglycerate-kinase
MKTLKDLGDLKGKRILVRADFNVPLDGTTITDDGRIKAALPTIKTLHEKGAKVILMAHLGRPKGKVVPELSLAPVAARLGELLGTNVPLAKDTYGEDAQAKVAAMNDGDVVLLENVRFNPEETSKDAAERAAYAKKIAALGEAFVSDGFGVVHRAQGSNYDVAADLPAAAGLLVEKEVKALSKATENPERPFTVVLGGSKVSDKLGVIENLLDKADRLVIGGGMVFTFLKAKGYEVGTSLLEEDQLDKVKGYIATAEKNGVELVLPTDVVVNAGFPAGDTPVAPEVVAADAIPSDKMGLDIGPDSQKLFHDKIVDSKTVVWNGPMGVFEVPEFAAGTKAVAQGLVDATAAGAFTIVGGGDSASAVRNLGFPEDGFSHISTGGGASLEFLEGKELPGLKVLE
>NC_017218.1|WP_003829339.1|1005916_1006867_-|DNA-binding-protein-WhiA
MALLDDVKSELAAFEGDSPAAIKAQAAAMIRFGGGLRPVQNAYVIQAVFTSLDAAEWLQNTLKNVFGHEAEVNHLTRQTPNGPVETYVVLVTRNVVALALQTGLVDRRKQQVRGLPAEVVNGSIAQIKAAWRGAFMARGFLSDPGKASFLEIACPTEEAAMALCGVARRLGIQAKHRTLRSSERVTLKDPDAIERMLKLMGATRSAREWTGKRSDGEARGKANRLANFDDANMRRSAKAAAEASEKVQHAFEVLGDNIPDNLRQAGQLRIDHVDKSLEELGKIAEPQITKDAIAGRIRRLLQLAEKTEKARAAEGR
>NC_017218.1|WP_003829338.1|1007023_1007989_-|RNase-adapter-RapZ
MSQPSSIHDSENQVDTHSDSAAADNQPNPADAFEVLLITGMSGAGRSRAADSVEDMGWYVVDNLPPKLLVPLVDMMTTSGSDSGVHKLAAVIDVRSRSYFDDLAAVLGHLDDLGVKTRILFLDANNDVLIKRYESVRRPHPLQHGNRLIDGILEERHLLENLKERADWVIDTSSLSIHQLSTKLYETMLGSGPTTVAVHIFSFGFKYGMPIDADFVADVRFLPNPFWVPSLRELTGADKPVADYVLSSKGAKEFLDSYERAIETAIEGYAQEDKHFVTIAIGCTGGQHRSVAMSEELARRLRAHGLNVTVSAREQHHRRSS
>NC_017218.1|WP_014483754.1|1007988_1008969_-|shikimate-5-dehydrogenase
MANHRCAVLGKPIAHSLSPVLHNAAYRSLNLNDWLYDKHEVGEDDLDAFLKGLDSTWAGLSLTMPLKRTIQPYGTPENLWAKELRVANTAVFDWNDITDDPAWPHGKPAIKLYNTDVIGIQLAFDHINRELGNHHAGDRAGTALIIGNGNTATSALAACCMMPEIGHITVAARHPGRNAGLKPVAEKFINTHNPYDEIELSDTSALLNAARTATYVINTIPGLAANGIANVINTDSESHAEPYSGLLLDVVYNPRPTRLMQAWRSHGGRAIGGEEMLLYQALIQVLLMTGIWDDDPPSDADKRLQGTTTEDDHLEIAMRNALEEAL
>NC_017218.1|WP_003831182.1|1009204_1011622_-|excinuclease-ABC-subunit-UvrC
MTNDIERHSPDEWRKTAAALMPESSSAGAEESAATAKVNANGAPLLGDSRDLFRPKTSDIPAKPGVYKWRDGQGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEWTVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGEQVPRVWVTRSRKRRDTRYFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLLASIGKCSAPCVNQIEADEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNAVVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIADTDLMADLLVQVYSDEAGNDHPQSAAPTAPASGGENAAVLPLAGAGTRSVTGGGAATISTSREAIGSTQTLTAMDAIARAQATRERNTRQETTGRVDLLAPIAPVPREIIVPIEPSRRAELESWLTDQRGGAVTIRVASRGDKKQLMDRANENANQALQRSKMSRISDMGARTQAMNDVAKALGLNQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSEYRRFSIRGKDGQGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRAAKAEQQQEQSASDVNGTSSTTPAAITDASSFADSSEVVQQNTNRHHFAYKPNLVVVDGGKPQVMAAAKALKDCGVDDVAVCGLAKRLEEVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMRMASVEDFEQVKGVGHAKAEALYAALHDE

Crispr_ID: NC_017218_5

• CRISPR_ID: NC_017218_5
• CRISPR_location: 1654072-1654850
• CRISPR_type: TypeI
• Repeat_type: I-C
• Spacer_info: 11 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas3

Consensus repeat of NC_017218_5

Consensus_repeat	Method
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRT

spacers of NC_017218_5

>5.1|1654105|36|NC_017218|PILER-CR,CRISPRCasFinder,CRT
GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
>5.2|1654174|33|NC_017218|PILER-CR,CRISPRCasFinder,CRT
GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
>5.3|1654240|35|NC_017218|PILER-CR,CRISPRCasFinder,CRT
TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
>5.4|1654308|35|NC_017218|PILER-CR,CRISPRCasFinder,CRT
CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
>5.5|1654376|35|NC_017218|PILER-CR,CRISPRCasFinder,CRT
CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
>5.6|1654444|36|NC_017218|PILER-CR,CRISPRCasFinder,CRT
CCAGACACCACGACCCCGGCTGCGGTACACGATACG
>5.7|1654513|33|NC_017218|PILER-CR,CRISPRCasFinder,CRT
TGATCGCCGTGATCACGGAGGTCACCACGGTTA
>5.8|1654579|36|NC_017218|PILER-CR,CRISPRCasFinder,CRT
TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
>5.9|1654648|35|NC_017218|PILER-CR,CRISPRCasFinder,CRT
TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
>5.10|1654716|35|NC_017218|PILER-CR,CRISPRCasFinder,CRT
GTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAG
>5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT
TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA

CRISPR arrays and Neighbor proteins around NC_017218_5

CRISPR arrays

The CRISPR arrays of NC_017218_5

>merge|NC_017218|5|1654072-1654850|PILER-CR,CRISPRCasFinder,CRT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGACGACCTCGCGGACCTCATCCTCGACACCATCAGCAGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGTGGCGGGAAACATCATCGGTCGTGGACAAATATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCCAGACACCACGACCCCGGCTGCGGTACACGATACGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGATCGCCGTGATCACGGAGGTCACCACGGTTAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGACGAATGGCGGAATCCACTGCCTACGCCTCAAAATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAAATTTCAATCCACGCTCCCCGGTGTGTCTGTTCA

>NC_017218|5|4|1654072-1654783|PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAGACACCACGACCCCGGCTGCGGTACACGATACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGATCGCCGTGATCACGGAGGTCACCACGGTTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NC_017218|5|5|1654072-1654850|CRISPRCasFinder
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAGACACCACGACCCCGGCTGCGGTACACGATACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGATCGCCGTGATCACGGAGGTCACCACGGTTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA
ATTTCAATCCACGCTCCCCGGTGTGTCTGTTCA

>NC_017218|5|2|1654072-1654850|CRT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GACCTCGCGGACCTCATCCTCGACACCATCAGCAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGTGGCGGGAAACATCATCGGTCGTGGACAAAT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCGCCATATCCCCTTTGATCTGCCCGTCAAGGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGTTCGACTGCGCGGCGATGTGCGCCGTGTACAAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTTGGGTTCCGCTCATGCGTTTACTTTCCTTCTTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAGACACCACGACCCCGGCTGCGGTACACGATACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGATCGCCGTGATCACGGAGGTCACCACGGTTA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCGGTCAGCAGGTTCGCCATGCCCTCGCCGTCCA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGACGAATGGCGGAATCCACTGCCTACGCCTCAAA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTGGTCGGCGGGCAGAAGCCCTTCTGGTCGCTGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTTTCGGGCTTTTTTATTTGGTTTGTGGGGATAA
ATTTCAATCCACGCTCCCCGGTGTGTCTGTTCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017218.1|WP_014484101.1|1666980_1669419_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_017218.1|WP_014484096.1|1660651_1660885_-|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_014484097.1|1661693_1662725_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NC_017218.1|WP_014484092.1|1650321_1651524_+|tyrosine-type-recombinase/integrase	unknown	unknown	gnl|CDD|271188
NC_017218.1|WP_041473264.1|1647956_1648718_+|ATPase-AAA	unknown	unknown	gnl|CDD|366760
NC_017218.1|WP_014483316.1|1656492_1657278_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|181681
NC_017218.1|WP_014484100.1|1664309_1666268_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	pfam09709_cas8c_CAS-I-C	gnl|CDD|378245
NC_017218.1|WP_041473262.1|1655008_1656490_+|IS21-family-transposase	unknown	unknown	gnl|CDD|226950
NC_017218.1|WP_010081384.1|1651520_1652486_+|tyrosine-type-recombinase/integrase	unknown	unknown	gnl|CDD|271178
NC_017218.1|WP_014484087.1|1635553_1636537_+|DUF348-domain-containing-protein	unknown	unknown	gnl|CDD|226111
NC_017218.1|WP_014484088.1|1640036_1640471_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_014484099.1|1663454_1664306_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|187820
NC_017218.1|WP_041473297.1|1652482_1653538_+|tyrosine-type-recombinase/integrase	unknown	unknown	gnl|CDD|271183
NC_017218.1|WP_041473296.1|1636724_1638101_-|hypothetical-protein	unknown	unknown	gnl|CDD|236892
NC_017218.1|WP_014484098.1|1662726_1663416_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|273040
NC_017218.1|WP_014484089.1|1640776_1642168_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_116894490.1|1644188_1644587_+|transposase	unknown	unknown	gnl|CDD|290319
NC_017218.1|WP_003833383.1|1661346_1661637_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_017218.1|WP_131068280.1|1670077_1670620_-|hypothetical-protein	unknown	unknown	gnl|CDD|379250
NC_017218.1|WP_003828384.1|1638298_1639735_-|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl|CDD|349772

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017218.1|WP_014484101.1|1666980_1669419_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	8e-56	184.4	0.1
NC_017218.1|WP_014484099.1|1663454_1664306_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	4.1e-95	312.9	0.8
NC_017218.1|WP_003833383.1|1661346_1661637_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5.6e-27	88.6	0.2
NC_017218.1|WP_014484098.1|1662726_1663416_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.4e-32	107.8	0.0
NC_017218.1|WP_014484100.1|1664309_1666268_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	pfam09709_cas8c_CAS-I-C	7e-98	323.2	0.2
NC_017218.1|WP_014484097.1|1661693_1662725_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	6.8e-138	454.1	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017218.1|WP_014484101.1|1666980_1669419_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.5575e-49
NC_017218.1|WP_014484099.1|1663454_1664306_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.89068e-107
NC_017218.1|WP_014484092.1|1650321_1651524_+|tyrosine-type-recombinase/integrase	gnl|CDD|271188	cd01188, INT_RitA_C_like, C-terminal catalytic domain of recombinase RitA, a component of the recombinase trio. Recombinases RitA (also known as pAE1), RitB, and RitC are encoded by three adjacent and overlapping genes. Collectively they are known as the Recombinase in Trio (RIT). This RitA family includes various bacterial integrases and integrases from the deletion-prone region of plasmid pAE1 of Alcaligenes eutrophus H1. All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	9.16154e-65
NC_017218.1|WP_003833383.1|1661346_1661637_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.39737e-29
NC_017218.1|WP_041473264.1|1647956_1648718_+|ATPase-AAA	gnl|CDD|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.64829e-51
NC_017218.1|WP_014483316.1|1656492_1657278_+|AAA-family-ATPase	gnl|CDD|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	2.68478e-58
NC_017218.1|WP_014484100.1|1664309_1666268_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.20591e-90
NC_017218.1|WP_041473262.1|1655008_1656490_+|IS21-family-transposase	gnl|CDD|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.50896e-14
NC_017218.1|WP_010081384.1|1651520_1652486_+|tyrosine-type-recombinase/integrase	gnl|CDD|271178	cd00797, INT_RitB_C_like, C-terminal catalytic domain of recombinase RitB, a component of the recombinase trio. Recombinases belonging to the RitA (also known as pAE1 due to its presence in the deletion prone region of plasmid pAE1 of Alcaligenes eutrophus H1), RitB, and RitC families are associated in a complex referred to as a Recombinase in Trio (RIT) element. These RIT elements consist of three adjacent and unidirectional overlapping genes, one from each family (ritABC in order of transcription). All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not yet fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism.	5.07575e-42
NC_017218.1|WP_014484087.1|1635553_1636537_+|DUF348-domain-containing-protein	gnl|CDD|226111	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown].	4.87255e-18
NC_017218.1|WP_014484097.1|1661693_1662725_-|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.77456e-177
NC_017218.1|WP_041473297.1|1652482_1653538_+|tyrosine-type-recombinase/integrase	gnl|CDD|271183	cd01182, INT_RitC_C_like, C-terminal catalytic domain of recombinase RitC, a component of the recombinase trio. Recombinases belonging to the RitA (also known as pAE1 due to its presence in the deletion prone region of plasmid pAE1 of Alcaligenes eutrophus H1), RitB, and RitC families are associated in a complex referred to as a Recombinase in Trio (RIT) element. These RIT elements consist of three adjacent and unidirectional overlapping genes, one from each family (ritABC in order of transcription). All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not yet fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism.	6.4185e-53
NC_017218.1|WP_041473296.1|1636724_1638101_-|hypothetical-protein	gnl|CDD|236892	PRK11281, PRK11281, mechanosensitive channel MscK.	0.000705052
NC_017218.1|WP_014484098.1|1662726_1663416_-|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.07596e-31
NC_017218.1|WP_131068280.1|1670077_1670620_-|hypothetical-protein	gnl|CDD|379250	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3.	8.25072e-05
NC_017218.1|WP_116894490.1|1644188_1644587_+|transposase	gnl|CDD|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.3214e-07
NC_017218.1|WP_003828384.1|1638298_1639735_-|polysaccharide-biosynthesis-tyrosine-autokinase	gnl|CDD|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	1.66805e-70

Protein sequences

>NC_017218.1|WP_041473297.1|1652482_1653538_+|tyrosine-type-recombinase/integrase
MSKARKTAASSGEPDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEGMRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEHTKALLTAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRIDEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSAFYAFATLDMMRKAVDAANPGPDPSKETWLSEQRLRQLHTLK
>NC_017218.1|WP_010081384.1|1651520_1652486_+|tyrosine-type-recombinase/integrase
MRPTEHGFVGPLAGELEEYIRFKASMGRHGATRVQVLRSFDRHCLEHGAVRLERGVVERWIAHRIDANPGGCRSWFSYIRDFGRWMRLAHDPDAYVLSDQWKAGSPRPTPYLLTDREAALFLRAAGTLESPSPWAWQSRAFFMLMACCGLRTREVRRLAVGHVDHKARSIDVVDSKAGRSRRLPVGDEVAAELLECDQRSRERFGDDRPAFFVTSTGNPVSPGMPGVVFRRVWTRAGLEWPQAGKRPRPYDFRHRFAFANIERWTRDGVDVMAMLPYLAAYMGHAGIDSTLYYVHASPDFMDGYADLVADAERVVPETEEP
>NC_017218.1|WP_014484092.1|1650321_1651524_+|tyrosine-type-recombinase/integrase
MGETTVGHVAGEVVRALYGAGYMESTIGQYRKSIRALERYAGGPDAVYTRGLGAGFAASTFSERTGGFSRQRWFDYGRLARLCDSYLRSGSVDLGKWRRSRLAEPVVPGLAVVMERWEAYLAGSGLASATVGHYRRMAGLFLTWLESHGVVSLDGSDGSHVLGFMAGLRSRWSESSMRHAASDLRPLFRWLGRDDLADAIGLAGIRRTHAIAGTLPDDEHRRLLEACASRSVPSRDAAITLLSLTCGLRACDVIGLRIADVDWDSMSIGLVQRKTGNPLTVPMTGPLAARLASWLLDERPATDDDRVFVRYKAPHVALRGHSSVYEAISRVMRHAGLGRRGGSRLLRRNAATRMLEAATPLPTISAVLGHADPDSTRVYMATHRGGMLACVLPVPEGGSS
>NC_017218.1|WP_041473264.1|1647956_1648718_+|ATPase-AAA
MNQKNGRTDPGPLRERARSLFISQATIDETLEWATPRQLDAIDRMPATEPANREASKRARLMRQARFPVPKSLDGYDFANVRLPDGYAKEQLTGLDFAAKAQDLVFYGKTGRGKTHLATAPGMLAIEQGRSVRFRQTAELVLQPGKAKRDGALDSLLRDLARADLIILDEFGYAPVRLDGARLLYQIIAGSYERRSIIFTTNIEFSKWGTIFADDKLAAAIIDRIVHHGRLIEFTGPSRRVSQALMFGKTDNQ
>NC_017218.1|WP_116894490.1|1644188_1644587_+|transposase
MAAPGAFMGAHPSRDRAHEGDPTRPPAAPPKGNRAAPWDCDGEAYKGRNMVERVFNRMKHYRKAATRHDGPDEGLWCMKRLPDLTMTGSCFSRYSSIYSMERCSSFRSNSLSRSLNSSCCFASSVIFPMDSG
>NC_017218.1|WP_014484089.1|1640776_1642168_+|hypothetical-protein
MSTPNNTQLGNKSVQEKRRNSSHCPALQRGAMTETLTRITITPSDMLMFAAVAMLPFDGTKIGIPLPYWAPISPWLFTLYTIINWRYLRDTARRFLPFFLFPLLLVLTSVYGWQSYGTHASATAKSFISILLGLACLASLDIAIRIKHVPVRTLLTTLFTAYVVAFLIGILQYIALERHLNWQPVQAYFWGALYRNYASVRPQFMFAEPSYIGMHLFGVLLPVFWLTRDRKIGILIPIFAAGAIAMGSGTRIILDTVVATFIWLIATINFHSRKVTAGFVGALGLLGAGGLSAIIINPRLNSLATNGLLAGDGSMSARIFHMLAPMWSWKHDLPHFMFGWGAGNISNAVRTGYAGARQWYDAHGGAPNTEIDGLANPPADTFTMSIYASFITEFGLFCFLAFLLLVLAHVAVHHGWSRRNICWFILLAYLYIQFESYAFYAIPLFIWAVCTIMNRGKNNINSL
>NC_017218.1|WP_014484088.1|1640036_1640471_+|hypothetical-protein
MASLLQGFEEVQLVKPVGKTVMTVTDSVVRFNKATAEVLNFPAQVKILINDKTRQIAVTPTTAKANNAVKFSKGEGKQTTSVSIKNAVLVEAISKYFTLVEAPEGEVSFASVNGTAYPEDKTVIFDVANATAGTMKRRGRKKAE
>NC_017218.1|WP_003828384.1|1638298_1639735_-|polysaccharide-biosynthesis-tyrosine-autokinase
MTIADLLQIVRKHLASAIISFVVVFAAVAAVTFIMPPKYTATAEVFATYAGQSGETQTTNDMSSGANYLNTQIKTYPELVKTEAVLQPVIKDLGLDMTTTDLAGVVTATNPTNTFMVDISAEVDDPQQAADIANSVAKNLSDQISSDLYNNSSSSGSPIKLTVVQKAQTPTGQSSPNIPLYLAMGLILGIIVGIGVALLEDILNTKVDSTDDVRELTHASSLGTVPQATILDDSRPVVVAQPAGSEAEEFRRIRTNLSFLTTTATQGHGRLLVITSTDPSEGKTTVSSNVAVALAEEGKSVLLIDADLRHPSMAHKLGIEGHVGLSHVLSRQASPADVIQKYWKPNLHIMPAGKRPANASILLNSDLMKEMVEQALTQYDYVIIDTAPLSVASDATVFGRMAGGLVLVTGKGVVEKKELENTATALQAAEVPILGFIFNFADPKKIHSKNYYYYYYEDGNKRSSHKGAKSKGEKKARK
>NC_017218.1|WP_041473296.1|1636724_1638101_-|hypothetical-protein
MMQRNEKSMGTDERPEPNAESGSSASPARGDIVDTFWDIPPISFDENDGGITQGDNGTGTVAGGVQSVFPSFDEVLEWPTASAANTAGDASSPSDAVATAPMTFAAPDTAESAQSPQQDNNATLPLFAPISDDKPQRTNATDDLNIDFSAIEQNPEPVEEPEEDRVAETPRGGKGGKKRTKGIIISVIVALVVIAAIIGGVWYWRFSEQRRESHQLHQDALTACTEAVDQNSTAQKALAKALADAKSAQSTTADQVADGATIDTLKKAIAAVKNVEAVECKTSASTSDLKEYAKTATSQTKTAKKNATAITAAAKAVTDSKNAKDQANAQQALQSKIAEAQTLLDNSLYAVDDNSTRVTLESDIANANTVLSQQGTDVKAMQDAVNTLTASMDAVNTSMANYSAAVEAQREAARQKALNDYYARLRQQQLLQQQQQTQPDGTGDQGTKLGTDDQETKP
>NC_017218.1|WP_014484087.1|1635553_1636537_+|DUF348-domain-containing-protein
MSKHAERTSFVKTLSRGQWAKIAAAVAAVGLIATAGVISRDFYQSSTATPSITPTSFSATDGAASRSASRGALKSTTYVTVKVNGKSRVVLGEKANMTTVKDVLETGDIVLDPEDSVTPSLDSKVSESTVISINRANTTVETTDTEIAFNEVRKETSSLPKGQEKVETEGEKGVLETTSLVTRSGDQVVSSNVFTSWVKKAPVDKVILVGTSAVSSPSAASLGTTTPAGEIQSWAHDYLISNGYSEADFTAANFIISHESGWSPTATNPSSGAYGLPQALPGSKMASAGADWQTNYQTQFKWFVNYCKGRYGSISGAYAYWQAHKSY
>NC_017218.1|WP_041473262.1|1655008_1656490_+|IS21-family-transposase
MTVPVSVQQRIRVLDAHGVSWRSIAKEVGVARDTVAKYAGREDCSPKPEHSASRPSKLDPFKATVDGWLEADRFMPRKQRHTAKRVYDRLVSERGYGGAYSSVQRYVKRWREEHRLPSDGYLELEWHPGEAQVDFGMARAVVGGDRVDVHCLVVTFPYSNMRYCVALPGENAECVCAGLRTVFEHIGAVPLTLVLDNATGAGHRVAWDRVSIVKVFELFVEHYRLETRFCNPNSGNEKGSVENAVGFLRRNIMVPLLNAESYAQLTRYMLERCDAMAKETHYRKGAPIGGLFAEEKAEMQPLPSKPYDAIRWEVRKADKDGRVQVDGNHYLAGPSWRGWTLDVALRAFDVTIRTQDGRTCARLPRVYGDSPATIRDPATLLPALGRKTNAWPDSTIRDDFPDKLRLAIDRMDAKARRNAFRLISRTSDACGFEPAVEAGEHLVEQGHPLDEASLTTMARRIASGEKPYEQTAPDLTGYDVFMQPRGTRERKEA
>NC_017218.1|WP_014483316.1|1656492_1657278_+|AAA-family-ATPase
MGIHRPPVVMPDMKRRRASTGEKIETIMNLARRLPLTRQILADQLANATPTQMEFVEEWMNAELESRERSKRSRLLKQAGFPADKELDGYDWTPIRFPVDYGRQRIESLEFISGHEDLVLFGPPGTGKTHLAIALGRNACRRGMPVRYHTAASLVMRLLRAQTDNRLDRELAMIGRTPLLIIDELGYVPIDEEGSRLLFQVVTNAYETQSIIYTTNIEFSGWGRIFGDPNMAAAIIDRTVHHGRMIRFEGESWRKTHALMQ
>NC_017218.1|WP_014484096.1|1660651_1660885_-|hypothetical-protein
MTMVESLPTYSSAEAEARSKGDNLISMINVYLAGYAAAGMPVDVETTGKTLHALPADTVLRTDADFDAFEHEVLGDD
>NC_017218.1|WP_003833383.1|1661346_1661637_-|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVNTETPDGKRRLRSVAKTCMKYGQRVQNSVFECSVTPSDYLILKHDLAEIMDEMCDSLRYYNLGSKYASKIEHRGRQRHVPVDGVMML
>NC_017218.1|WP_014484097.1|1661693_1662725_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVTSEDVYLSLKNDNVIVQQGDNTLGRIPLRSLESIISFSYKGASPALMGKCSELGVGLSFFSPRGWYYCSILGEKNRNVLLRREQFRFADDESEALPFARSFIIGKIYNCRWVLERTKRDHALRVNSERIAAQSEKLRQSLANVRNCTSIDELRGVEGLAAKDYFFTFDNLILRDKDDFFFQQRSRRPPLDRANALLSFVYSLLTSDCIAALQGVGLDPYVGFLHTDRPGRASLALDLVEEFRPAIADRFVLTLINTGVIKPSQFEVRENGGVFLSEGGRKTVLAAWQKRKQETITHPFFGEKIPWGLVPHVQALLLNRAIRGDLDAYPPFMWK
>NC_017218.1|WP_014484098.1|1662726_1663416_-|CRISPR-associated-protein-Cas4
MKEPTDYPEDDWLALSGLQHFAFCRRQWALIHIEQQWQDNYLTTAGSLEHDRAHDYSESETRGNLLIMRDLRVFSRRLGITGACDVVEFRQSDEGVPLHGRAGTWLPYPVEYKHGVPKQVDADRLQLCAEAMCLEEMLACSIPEGSLFYQQTKRRERVQFDESLRGQIVAMTSEMHDLFSRGHTPKVRPSKACRACSLSDICLPKIAKTRSAHQFIEESVQAGVEGVAG
>NC_017218.1|WP_014484099.1|1663454_1664306_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQHKIDFVLTFAVENANPNGDPLNGNRPRTTAEGLGEMSDVAEKRKIRNRLQDAGERIFVQSTDRTDDGEKSLSDRWKAFTKTLSKEDQKDREALSYRACEQWIDVRSFGQVFAFKGKEKEGDASVSIPVRGPFTIQSAFSLEPIAIDDVQITKSVNGETTDTNKKSSDTMGMKHRVSGRAVYVTHGSISPQLAEKTGFTEKDAEKIKEALLTLFENDESSARPAGSMEVVNLAWFTHNSKAGQYSSAKVHRTAKVDEEGVITVDTTHIPGLHYEVLEGR
>NC_017218.1|WP_014484100.1|1664309_1666268_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MSLWSSLLQTYDAVNSSAGITPLNEDVNKTLLPLYHTTLKTQLQVTLDENGYPTIKRDNADIEIIAPCTEQSMGRSGTVLPPHPLFDQLQYIDTNYDPVKHESYLSQLASWKGDNAKLNAIYQYLSQHSIIEEARAQGIGIDPKKDSKIGVRFAVHVRHGDYEPNVWADHAIRDLWIAHEEQVRHGASLGTDLFGETLYKPSTNFPKKIVNVNGNAKLISANDNTNFTFRGRFANRDEALSIDTLTSQKIHTTLRWLAANNGTLTGSQDIVIWAIDGHPTDNVFDPTGNSRDVAEQVDDRTDSEKLIDANVQTYANYAKQFGKLLRGYGNEKVLQQMQQHSRRIVVTIFDAATSGRLSVTFYRELSQNEYIESVLQWHEDAAWYLTCFDNKNSASTDDEAPRGSKKSSDKLKPIPYIGAPSFADIINCVYSTDDHSSDSYRRFAKYVKKQLVECMFSNAGLPASLLQPAFHKVIRPLSYDSLSVWQHDFEVACSMWKKYYIDQDKRLPLNERNNITMDLDEKRTDRDYLFGQLLALADNYEYRVLLRQSGGRTPDRTTNAVKLMNNFVAKPSTTWLTLRQQLNPYIISSTNGMFFQNEVDEVMSKFKEGDFESNKPLSSLFLLGYSHKRRQLIQRADAAKQLKEQNIENKGE
>NC_017218.1|WP_014484101.1|1666980_1669419_-|CRISPR-associated-helicase/endonuclease-Cas3
MGHALMPKDLLLARKDDDGNTQTLYDHLHNTAKLAAGFEKRSSVTAFAAGLLHDSGKATDDFKRYLLTGNRKRGEVVHAKQGAFIVDDCAADFPSSAASMITAEVLELAIANHHGHLPDCLDACGGTAYFRKLTGENKKAEQYHYQEVLSHVSSLNLDINTNFANSVAETNRLLETVDSCGISPRNTRNSRSFFLGLYAKYIYSRLVDADRVDAANFTAHQPYTSQTPNWEELTRRLENAISGFDTSSKISKIRMRISEDCLAASTRDTGIYRLGVPTGGGKTLASLRFALHHAQETGKHHIIYITPYLSITEQTVQVFRNVLDLDKDDEILLEHYSSVVPDKDDEKEQQRRLAAERWDKPIIVTTMVQFLETVMSAKATKLRKFHNLADSVIVFDEVQALPTNTINVFNEVVSFLSKILGSTILLCSATQPLLEQTDRRNLLLSDKPDLIDPDNDYAEQLRRTNIVASSQGLTLDDFAAEIYSKALDNGNCLAVVNLKGEAKQLYQLVKELDVDHRFTLVHLSTAMCGAHRKNQLAVLKKCLPKKTGDSGQPVICISTQLIEAGVDISFSCVIRAMAGLDSILQAAGRCNRNGESQMPRNVYVYPIKDESGLRYLPEIQLGKEITDQLIHDYPEQDLLSAFMIEEYYRAYLIRYPKLVDSKSRNIGTMDYSILGGEETVYDLLSFNRRRRGLYCNRVGEQYPYAFAQAFQTVGDSFHVIPGGTTDVVVHYGQAMELIDQLSGEGDFASKIKILRSLQEYTVSLFDYEFKALDKSKSIGEANGDFGILVLNEENYSQDFGFLLKAEMPLLMK
>NC_017218.1|WP_131068280.1|1670077_1670620_-|hypothetical-protein
MRQMWGAWPAVRPAGRAPLAASRHRLRQAPAGARAPEGRLRGARGDRRDGAVARRKSAYTRDFERQVAWLSVHAPRSAVSALMRVDWKSVGPICRRVPLGHRGVLEARREDRPPPLRHPAHHPVRTIQRSPGGRQQQDQDHHQDRLRLQEPRQPHRPGHAQMRRPQPPTPRTPITRKPDQ

Crispr_ID: NC_017218_6

• CRISPR_ID: NC_017218_6
• CRISPR_location: 1657368-1659827
• CRISPR_type: TypeI
• Repeat_type: I-C
• Spacer_info: 36 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas3

Consensus repeat of NC_017218_6

Consensus_repeat	Method
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CRT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	PILER-CR

spacers of NC_017218_6

>6.1|1657401|34|NC_017218|CRISPRCasFinder,CRT
AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC
>6.2|1657468|36|NC_017218|CRISPRCasFinder,CRT
GTAGCTTTCCTCGACGTGCCCGCCGAACCGGCCGGG
>6.3|1657537|36|NC_017218|CRISPRCasFinder,CRT
GCGGGGCGCGATCGCATCCATGCAGTTCGGCGTGGC
>6.4|1657606|35|NC_017218|CRISPRCasFinder,CRT
GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA
>6.5|1657674|35|NC_017218|CRISPRCasFinder,CRT
CGGCTCATCTCCGACGAGGTGGCGCAGGCCAATGA
>6.6|1657742|34|NC_017218|CRISPRCasFinder,CRT
CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG
>6.7|1657809|37|NC_017218|CRISPRCasFinder,CRT
TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG
>6.8|1657879|35|NC_017218|CRISPRCasFinder,CRT
CGGGCATATCAATATCCGTCGTGCCCGAAGCGCTG
>6.9|1657947|34|NC_017218|CRISPRCasFinder,CRT
GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG
>6.10|1658014|33|NC_017218|CRISPRCasFinder,CRT
CAATCGGCAGACCGTATCCTCGGTCGTTAATCT
>6.11|1658080|34|NC_017218|CRISPRCasFinder,CRT
AAGTCAACCTCAGCCGCATTGTAACAGGAGGTGA
>6.12|1658147|33|NC_017218|CRISPRCasFinder,CRT
GGAAGCAAGACCGCGCCATGGGCCACCCGACTT
>6.13|1658213|33|NC_017218|CRISPRCasFinder,CRT
CTCCGGTTTGTTCCATACGGTCACGCCACGTTC
>6.14|1658279|36|NC_017218|CRISPRCasFinder,CRT
TTGCGCCGTGGGTACCGACGTGACGCCGAGCGCGTT
>6.15|1658348|35|NC_017218|CRISPRCasFinder,CRT
GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT
>6.16|1658416|33|NC_017218|CRISPRCasFinder,CRT
GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT
>6.17|1658482|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR
GATATGATGCAATGTATCATCCAGCCCAATGGAG
>6.18|1658549|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR
AAGTCGCCACGTCGAAATTCGGACAGTTTCTACGC
>6.19|1658617|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR
CTATTTCAACATGCGCTACCGGACGCTGGACATG
>6.20|1658684|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR
TTACCGGCCAAACCCGCCTCACGATCCATGTCT
>6.21|1658750|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR
TTGCCGTCGATGGTCGGGGAGCCGTGCCCGGTGAG
>6.22|1658818|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR
CCGGTCGATGCCGGTCGTGCTTGTCGGTTTGTCGA
>6.23|1658886|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR
CACCAAGCTCCGCGCGTTGATTCTCGCGGTGTT
>6.24|1658952|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR
CGAAGGCACGCGCCCAACCCGCCGCGTCCTGGCT
>6.25|1659019|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR
GCAACGACTGTTGGCTGGACATGCCGGGATGCAC
>6.26|1659086|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR
CCAATGCGGAGAGGATACGGCCTGGGATGCTGGA
>6.27|1659153|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR
TGAGCTGGCCCGCATACCAGAACGCCAAGGTGGA
>6.28|1659220|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR
TGCCAGTGGTGCTCATGCCCGGCGCGGCCGCAG
>6.29|1659286|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR
CGGGTCGGTGTCACGGCTGATGCAATCCAAGTGGA
>6.30|1659354|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR
CCGGCCACGCCGCTGCCGGTGGGAGCACCCTGGGT
>6.31|1659422|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR
TTCTTCGGCGTCCCGTTGATGGCTTTGCTGGATGA
>6.32|1659490|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR
TCGCGCAACGCTTCGGCCTCGGAACGATCCAGAG
>6.33|1659557|36|NC_017218|CRISPRCasFinder,CRT,PILER-CR
CTGATTGCCGGCCCAGGCGTTGCTATCGTTCCTGCG
>6.34|1659626|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR
GTGGCAGGCCAAGGACGCGAGAAACGGCATCGTGG
>6.35|1659694|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR
TAGCGTCAACGAGCATGTCCGCCATGCTCAACG
>6.36|1659760|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR
CTGCCGAAGGCGGCGGCTTTGCCGGTGACCTTGCT

CRISPR arrays and Neighbor proteins around NC_017218_6

CRISPR arrays

The CRISPR arrays of NC_017218_6

>merge|NC_017218|6|1657368-1659827|CRISPRCasFinder,CRT,PILER-CR
ATTTGACAAAACACACCCCGGATGGGGAGCGACAGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTAGCTTTCCTCGACGTGCCCGCCGAACCGGCCGGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGCGGGGCGCGATCGCATCCATGCAGTTCGGCGTGGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACGCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGGCTCATCTCCGACGAGGTGGCGCAGGCCAATGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCATACACCGTCCTTGGCTGGGTTCGACTGCAAGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGGGCATATCAATATCCGTCGTGCCCGAAGCGCTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTTTACGTTCCCCGGTTGCGATTTGTTTCACGTGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCAATCGGCAGACCGTATCCTCGGTCGTTAATCTATTTCAATCCACGCTCCCCGGATGGGGAGCGACAAGTCAACCTCAGCCGCATTGTAACAGGAGGTGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGAAGCAAGACCGCGCCATGGGCCACCCGACTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTCCGGTTTGTTCCATACGGTCACGCCACGTTCATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTGCGCCGTGGGTACCGACGTGACGCCGAGCGCGTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTTTTAATGTGATTTAATGGGACTGTTGCTGAATTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGGGAGGTTGCCACGCCCTGCTGTTCCATCTCGTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGATATGATGCAATGTATCATCCAGCCCAATGGAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACAAGTCGCCACGTCGAAATTCGGACAGTTTCTACGCATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTATTTCAACATGCGCTACCGGACGCTGGACATGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTACCGGCCAAACCCGCCTCACGATCCATGTCTATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTGCCGTCGATGGTCGGGGAGCCGTGCCCGGTGAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCCGGTCGATGCCGGTCGTGCTTGTCGGTTTGTCGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCACCAAGCTCCGCGCGTTGATTCTCGCGGTGTTATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGAAGGCACGCGCCCAACCCGCCGCGTCCTGGCTATTTCAATCCACGCTCCCCGGATGGGGAGCGACGCAACGACTGTTGGCTGGACATGCCGGGATGCACATTTCAATCCACGCTCCCCGGATGGGGAGCGACCCAATGCGGAGAGGATACGGCCTGGGATGCTGGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGAGCTGGCCCGCATACCAGAACGCCAAGGTGGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTGCCAGTGGTGCTCATGCCCGGCGCGGCCGCAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCGGGTCGGTGTCACGGCTGATGCAATCCAAGTGGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACCCGGCCACGCCGCTGCCGGTGGGAGCACCCTGGGTATTTCAATCCACGCTCCCCGGATGGGGAGCGACTTCTTCGGCGTCCCGTTGATGGCTTTGCTGGATGAATTTCAATCCACGCTCCCCGGATGGGGAGCGACTCGCGCAACGCTTCGGCCTCGGAACGATCCAGAGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTGATTGCCGGCCCAGGCGTTGCTATCGTTCCTGCGATTTCAATCCACGCTCCCCGGATGGGGAGCGACGTGGCAGGCCAAGGACGCGAGAAACGGCATCGTGGATTTCAATCCACGCTCCCCGGATGGGGAGCGACTAGCGTCAACGAGCATGTCCGCCATGCTCAACGATTTCAATCCACGCTCCCCGGATGGGGAGCGACCTGCCGAAGGCGGCGGCTTTGCCGGTGACCTTGCTATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NC_017218|6|6|1657368-1659827|CRISPRCasFinder
ATTTGACAAAACACACCCCGGATGGGGAGCGAC	AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTAGCTTTCCTCGACGTGCCCGCCGAACCGGCCGGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGGGGCGCGATCGCATCCATGCAGTTCGGCGTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGCTCATCTCCGACGAGGTGGCGCAGGCCAATGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGCATATCAATATCCGTCGTGCCCGAAGCGCTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCAGACCGTATCCTCGGTCGTTAATCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCAACCTCAGCCGCATTGTAACAGGAGGTGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGAAGCAAGACCGCGCCATGGGCCACCCGACTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCCGGTTTGTTCCATACGGTCACGCCACGTTC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGCGCCGTGGGTACCGACGTGACGCCGAGCGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GATATGATGCAATGTATCATCCAGCCCAATGGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCGCCACGTCGAAATTCGGACAGTTTCTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTATTTCAACATGCGCTACCGGACGCTGGACATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTACCGGCCAAACCCGCCTCACGATCCATGTCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGCCGTCGATGGTCGGGGAGCCGTGCCCGGTGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCGGTCGATGCCGGTCGTGCTTGTCGGTTTGTCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACCAAGCTCCGCGCGTTGATTCTCGCGGTGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGAAGGCACGCGCCCAACCCGCCGCGTCCTGGCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCAACGACTGTTGGCTGGACATGCCGGGATGCAC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAATGCGGAGAGGATACGGCCTGGGATGCTGGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGAGCTGGCCCGCATACCAGAACGCCAAGGTGGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCAGTGGTGCTCATGCCCGGCGCGGCCGCAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGTCGGTGTCACGGCTGATGCAATCCAAGTGGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCGGCCACGCCGCTGCCGGTGGGAGCACCCTGGGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCTTCGGCGTCCCGTTGATGGCTTTGCTGGATGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGCGCAACGCTTCGGCCTCGGAACGATCCAGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGATTGCCGGCCCAGGCGTTGCTATCGTTCCTGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTGGCAGGCCAAGGACGCGAGAAACGGCATCGTGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TAGCGTCAACGAGCATGTCCGCCATGCTCAACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGCCGAAGGCGGCGGCTTTGCCGGTGACCTTGCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NC_017218|6|3|1657368-1659827|CRT
ATTTGACAAAACACACCCCGGATGGGGAGCGAC	AGGTTGGTGATGCGGCGGCGCTGTTCGAGGATGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTAGCTTTCCTCGACGTGCCCGCCGAACCGGCCGGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGGGGCGCGATCGCATCCATGCAGTTCGGCGTGGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCGCTTGTTCGTGTTCGCTGTTCCCGCCACCGCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGCTCATCTCCGACGAGGTGGCGCAGGCCAATGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CATACACCGTCCTTGGCTGGGTTCGACTGCAAGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCCATGCTCGGTGTCCAGATGCTCTCCGGATATGATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGCATATCAATATCCGTCGTGCCCGAAGCGCTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTACGTTCCCCGGTTGCGATTTGTTTCACGTG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CAATCGGCAGACCGTATCCTCGGTCGTTAATCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCAACCTCAGCCGCATTGTAACAGGAGGTGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGAAGCAAGACCGCGCCATGGGCCACCCGACTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTCCGGTTTGTTCCATACGGTCACGCCACGTTC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGCGCCGTGGGTACCGACGTGACGCCGAGCGCGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTTTTAATGTGATTTAATGGGACTGTTGCTGAATT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GGGAGGTTGCCACGCCCTGCTGTTCCATCTCGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GATATGATGCAATGTATCATCCAGCCCAATGGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCGCCACGTCGAAATTCGGACAGTTTCTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTATTTCAACATGCGCTACCGGACGCTGGACATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTACCGGCCAAACCCGCCTCACGATCCATGTCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGCCGTCGATGGTCGGGGAGCCGTGCCCGGTGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCGGTCGATGCCGGTCGTGCTTGTCGGTTTGTCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACCAAGCTCCGCGCGTTGATTCTCGCGGTGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGAAGGCACGCGCCCAACCCGCCGCGTCCTGGCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCAACGACTGTTGGCTGGACATGCCGGGATGCAC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAATGCGGAGAGGATACGGCCTGGGATGCTGGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGAGCTGGCCCGCATACCAGAACGCCAAGGTGGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCAGTGGTGCTCATGCCCGGCGCGGCCGCAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGTCGGTGTCACGGCTGATGCAATCCAAGTGGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCGGCCACGCCGCTGCCGGTGGGAGCACCCTGGGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCTTCGGCGTCCCGTTGATGGCTTTGCTGGATGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGCGCAACGCTTCGGCCTCGGAACGATCCAGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGATTGCCGGCCCAGGCGTTGCTATCGTTCCTGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTGGCAGGCCAAGGACGCGAGAAACGGCATCGTGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TAGCGTCAACGAGCATGTCCGCCATGCTCAACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGCCGAAGGCGGCGGCTTTGCCGGTGACCTTGCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

>NC_017218|6|5|1658449-1659827|PILER-CR
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GATATGATGCAATGTATCATCCAGCCCAATGGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	AAGTCGCCACGTCGAAATTCGGACAGTTTCTACGC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTATTTCAACATGCGCTACCGGACGCTGGACATG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTACCGGCCAAACCCGCCTCACGATCCATGTCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTGCCGTCGATGGTCGGGGAGCCGTGCCCGGTGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCGGTCGATGCCGGTCGTGCTTGTCGGTTTGTCGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CACCAAGCTCCGCGCGTTGATTCTCGCGGTGTT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGAAGGCACGCGCCCAACCCGCCGCGTCCTGGCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GCAACGACTGTTGGCTGGACATGCCGGGATGCAC
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCAATGCGGAGAGGATACGGCCTGGGATGCTGGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGAGCTGGCCCGCATACCAGAACGCCAAGGTGGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TGCCAGTGGTGCTCATGCCCGGCGCGGCCGCAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CGGGTCGGTGTCACGGCTGATGCAATCCAAGTGGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CCGGCCACGCCGCTGCCGGTGGGAGCACCCTGGGT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TTCTTCGGCGTCCCGTTGATGGCTTTGCTGGATGA
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TCGCGCAACGCTTCGGCCTCGGAACGATCCAGAG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGATTGCCGGCCCAGGCGTTGCTATCGTTCCTGCG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	GTGGCAGGCCAAGGACGCGAGAAACGGCATCGTGG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	TAGCGTCAACGAGCATGTCCGCCATGCTCAACG
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	CTGCCGAAGGCGGCGGCTTTGCCGGTGACCTTGCT
ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017218.1|WP_014484101.1|1666980_1669419_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_017218.1|WP_014484096.1|1660651_1660885_-|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_014484097.1|1661693_1662725_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NC_017218.1|WP_014484092.1|1650321_1651524_+|tyrosine-type-recombinase/integrase	unknown	unknown	gnl|CDD|271188
NC_017218.1|WP_041473264.1|1647956_1648718_+|ATPase-AAA	unknown	unknown	gnl|CDD|366760
NC_017218.1|WP_010081384.1|1651520_1652486_+|tyrosine-type-recombinase/integrase	unknown	unknown	gnl|CDD|271178
NC_017218.1|WP_014484100.1|1664309_1666268_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	pfam09709_cas8c_CAS-I-C	gnl|CDD|378245
NC_017218.1|WP_041473262.1|1655008_1656490_+|IS21-family-transposase	unknown	unknown	gnl|CDD|226950
NC_017218.1|WP_014483316.1|1656492_1657278_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|181681
NC_017218.1|WP_095256878.1|1675018_1675984_-|ribokinase	unknown	unknown	gnl|CDD|238579
NC_017218.1|WP_116894490.1|1644188_1644587_+|transposase	unknown	unknown	gnl|CDD|290319
NC_017218.1|WP_014484088.1|1640036_1640471_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_014484099.1|1663454_1664306_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|187820
NC_017218.1|WP_041473297.1|1652482_1653538_+|tyrosine-type-recombinase/integrase	unknown	unknown	gnl|CDD|271183
NC_017218.1|WP_014484103.1|1671037_1674346_-|mupirocin-resistant-isoleucine--tRNA-ligase	unknown	unknown	gnl|CDD|235681
NC_017218.1|WP_014484098.1|1662726_1663416_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|273040
NC_017218.1|WP_014484089.1|1640776_1642168_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_003833383.1|1661346_1661637_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_017218.1|WP_131068280.1|1670077_1670620_-|hypothetical-protein	unknown	unknown	gnl|CDD|379250
NC_017218.1|WP_003828384.1|1638298_1639735_-|polysaccharide-biosynthesis-tyrosine-autokinase	unknown	unknown	gnl|CDD|349772

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017218.1|WP_014484101.1|1666980_1669419_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	8e-56	184.4	0.1
NC_017218.1|WP_014484099.1|1663454_1664306_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	4.1e-95	312.9	0.8
NC_017218.1|WP_003833383.1|1661346_1661637_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5.6e-27	88.6	0.2
NC_017218.1|WP_014484098.1|1662726_1663416_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.4e-32	107.8	0.0
NC_017218.1|WP_014484100.1|1664309_1666268_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	cas8c	pfam09709_cas8c_CAS-I-C	7e-98	323.2	0.2
NC_017218.1|WP_014484097.1|1661693_1662725_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	6.8e-138	454.1	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017218.1|WP_014484101.1|1666980_1669419_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.5575e-49
NC_017218.1|WP_014484097.1|1661693_1662725_-|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.77456e-177
NC_017218.1|WP_003833383.1|1661346_1661637_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.39737e-29
NC_017218.1|WP_041473264.1|1647956_1648718_+|ATPase-AAA	gnl|CDD|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.64829e-51
NC_017218.1|WP_010081384.1|1651520_1652486_+|tyrosine-type-recombinase/integrase	gnl|CDD|271178	cd00797, INT_RitB_C_like, C-terminal catalytic domain of recombinase RitB, a component of the recombinase trio. Recombinases belonging to the RitA (also known as pAE1 due to its presence in the deletion prone region of plasmid pAE1 of Alcaligenes eutrophus H1), RitB, and RitC families are associated in a complex referred to as a Recombinase in Trio (RIT) element. These RIT elements consist of three adjacent and unidirectional overlapping genes, one from each family (ritABC in order of transcription). All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not yet fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism.	5.07575e-42
NC_017218.1|WP_014484100.1|1664309_1666268_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.20591e-90
NC_017218.1|WP_014484092.1|1650321_1651524_+|tyrosine-type-recombinase/integrase	gnl|CDD|271188	cd01188, INT_RitA_C_like, C-terminal catalytic domain of recombinase RitA, a component of the recombinase trio. Recombinases RitA (also known as pAE1), RitB, and RitC are encoded by three adjacent and overlapping genes. Collectively they are known as the Recombinase in Trio (RIT). This RitA family includes various bacterial integrases and integrases from the deletion-prone region of plasmid pAE1 of Alcaligenes eutrophus H1. All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	9.16154e-65
NC_017218.1|WP_014483316.1|1656492_1657278_+|AAA-family-ATPase	gnl|CDD|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	2.68478e-58
NC_017218.1|WP_116894490.1|1644188_1644587_+|transposase	gnl|CDD|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.3214e-07
NC_017218.1|WP_095256878.1|1675018_1675984_-|ribokinase	gnl|CDD|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	3.11265e-105
NC_017218.1|WP_014484099.1|1663454_1664306_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.89068e-107
NC_017218.1|WP_041473262.1|1655008_1656490_+|IS21-family-transposase	gnl|CDD|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.50896e-14
NC_017218.1|WP_041473297.1|1652482_1653538_+|tyrosine-type-recombinase/integrase	gnl|CDD|271183	cd01182, INT_RitC_C_like, C-terminal catalytic domain of recombinase RitC, a component of the recombinase trio. Recombinases belonging to the RitA (also known as pAE1 due to its presence in the deletion prone region of plasmid pAE1 of Alcaligenes eutrophus H1), RitB, and RitC families are associated in a complex referred to as a Recombinase in Trio (RIT) element. These RIT elements consist of three adjacent and unidirectional overlapping genes, one from each family (ritABC in order of transcription). All three integrases contain a catalytic motif, suggesting that they are all active enzymes. However, their specific roles are not yet fully understood. All three families belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism.	6.4185e-53
NC_017218.1|WP_014484103.1|1671037_1674346_-|mupirocin-resistant-isoleucine--tRNA-ligase	gnl|CDD|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_017218.1|WP_014484098.1|1662726_1663416_-|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.07596e-31
NC_017218.1|WP_131068280.1|1670077_1670620_-|hypothetical-protein	gnl|CDD|379250	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3.	8.25072e-05
NC_017218.1|WP_003828384.1|1638298_1639735_-|polysaccharide-biosynthesis-tyrosine-autokinase	gnl|CDD|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	1.66805e-70

Protein sequences

>NC_017218.1|WP_014483316.1|1656492_1657278_+|AAA-family-ATPase
MGIHRPPVVMPDMKRRRASTGEKIETIMNLARRLPLTRQILADQLANATPTQMEFVEEWMNAELESRERSKRSRLLKQAGFPADKELDGYDWTPIRFPVDYGRQRIESLEFISGHEDLVLFGPPGTGKTHLAIALGRNACRRGMPVRYHTAASLVMRLLRAQTDNRLDRELAMIGRTPLLIIDELGYVPIDEEGSRLLFQVVTNAYETQSIIYTTNIEFSGWGRIFGDPNMAAAIIDRTVHHGRMIRFEGESWRKTHALMQ
>NC_017218.1|WP_041473262.1|1655008_1656490_+|IS21-family-transposase
MTVPVSVQQRIRVLDAHGVSWRSIAKEVGVARDTVAKYAGREDCSPKPEHSASRPSKLDPFKATVDGWLEADRFMPRKQRHTAKRVYDRLVSERGYGGAYSSVQRYVKRWREEHRLPSDGYLELEWHPGEAQVDFGMARAVVGGDRVDVHCLVVTFPYSNMRYCVALPGENAECVCAGLRTVFEHIGAVPLTLVLDNATGAGHRVAWDRVSIVKVFELFVEHYRLETRFCNPNSGNEKGSVENAVGFLRRNIMVPLLNAESYAQLTRYMLERCDAMAKETHYRKGAPIGGLFAEEKAEMQPLPSKPYDAIRWEVRKADKDGRVQVDGNHYLAGPSWRGWTLDVALRAFDVTIRTQDGRTCARLPRVYGDSPATIRDPATLLPALGRKTNAWPDSTIRDDFPDKLRLAIDRMDAKARRNAFRLISRTSDACGFEPAVEAGEHLVEQGHPLDEASLTTMARRIASGEKPYEQTAPDLTGYDVFMQPRGTRERKEA
>NC_017218.1|WP_041473297.1|1652482_1653538_+|tyrosine-type-recombinase/integrase
MSKARKTAASSGEPDFWRVARDWLHHWLPKVRGSSPKTVEAYRIGLESYVRWLETTEGTQRSHIGFGHFDRARLGRWVEGMRTERGYSDRTIMLRMTTMRVFLDHAGLEHPALTALGNDAAGIRVKPPARKPVDHLGEEHTKALLTAWGTGDAKSRRNRMLLILMYDTAARIGELAALTIADVGMDKPARVTLTGKRGKSRVVPLGERTRTHLAAYLEEFHPGPSMRDGDRPLFHSTRNGAIQPLSVDRIDEILKTAAARARRGTCPSMPERVHCHLIRRTRAMDLYQQGVPLPLIMQLLGHESMSTTSAFYAFATLDMMRKAVDAANPGPDPSKETWLSEQRLRQLHTLK
>NC_017218.1|WP_010081384.1|1651520_1652486_+|tyrosine-type-recombinase/integrase
MRPTEHGFVGPLAGELEEYIRFKASMGRHGATRVQVLRSFDRHCLEHGAVRLERGVVERWIAHRIDANPGGCRSWFSYIRDFGRWMRLAHDPDAYVLSDQWKAGSPRPTPYLLTDREAALFLRAAGTLESPSPWAWQSRAFFMLMACCGLRTREVRRLAVGHVDHKARSIDVVDSKAGRSRRLPVGDEVAAELLECDQRSRERFGDDRPAFFVTSTGNPVSPGMPGVVFRRVWTRAGLEWPQAGKRPRPYDFRHRFAFANIERWTRDGVDVMAMLPYLAAYMGHAGIDSTLYYVHASPDFMDGYADLVADAERVVPETEEP
>NC_017218.1|WP_014484092.1|1650321_1651524_+|tyrosine-type-recombinase/integrase
MGETTVGHVAGEVVRALYGAGYMESTIGQYRKSIRALERYAGGPDAVYTRGLGAGFAASTFSERTGGFSRQRWFDYGRLARLCDSYLRSGSVDLGKWRRSRLAEPVVPGLAVVMERWEAYLAGSGLASATVGHYRRMAGLFLTWLESHGVVSLDGSDGSHVLGFMAGLRSRWSESSMRHAASDLRPLFRWLGRDDLADAIGLAGIRRTHAIAGTLPDDEHRRLLEACASRSVPSRDAAITLLSLTCGLRACDVIGLRIADVDWDSMSIGLVQRKTGNPLTVPMTGPLAARLASWLLDERPATDDDRVFVRYKAPHVALRGHSSVYEAISRVMRHAGLGRRGGSRLLRRNAATRMLEAATPLPTISAVLGHADPDSTRVYMATHRGGMLACVLPVPEGGSS
>NC_017218.1|WP_041473264.1|1647956_1648718_+|ATPase-AAA
MNQKNGRTDPGPLRERARSLFISQATIDETLEWATPRQLDAIDRMPATEPANREASKRARLMRQARFPVPKSLDGYDFANVRLPDGYAKEQLTGLDFAAKAQDLVFYGKTGRGKTHLATAPGMLAIEQGRSVRFRQTAELVLQPGKAKRDGALDSLLRDLARADLIILDEFGYAPVRLDGARLLYQIIAGSYERRSIIFTTNIEFSKWGTIFADDKLAAAIIDRIVHHGRLIEFTGPSRRVSQALMFGKTDNQ
>NC_017218.1|WP_116894490.1|1644188_1644587_+|transposase
MAAPGAFMGAHPSRDRAHEGDPTRPPAAPPKGNRAAPWDCDGEAYKGRNMVERVFNRMKHYRKAATRHDGPDEGLWCMKRLPDLTMTGSCFSRYSSIYSMERCSSFRSNSLSRSLNSSCCFASSVIFPMDSG
>NC_017218.1|WP_014484089.1|1640776_1642168_+|hypothetical-protein
MSTPNNTQLGNKSVQEKRRNSSHCPALQRGAMTETLTRITITPSDMLMFAAVAMLPFDGTKIGIPLPYWAPISPWLFTLYTIINWRYLRDTARRFLPFFLFPLLLVLTSVYGWQSYGTHASATAKSFISILLGLACLASLDIAIRIKHVPVRTLLTTLFTAYVVAFLIGILQYIALERHLNWQPVQAYFWGALYRNYASVRPQFMFAEPSYIGMHLFGVLLPVFWLTRDRKIGILIPIFAAGAIAMGSGTRIILDTVVATFIWLIATINFHSRKVTAGFVGALGLLGAGGLSAIIINPRLNSLATNGLLAGDGSMSARIFHMLAPMWSWKHDLPHFMFGWGAGNISNAVRTGYAGARQWYDAHGGAPNTEIDGLANPPADTFTMSIYASFITEFGLFCFLAFLLLVLAHVAVHHGWSRRNICWFILLAYLYIQFESYAFYAIPLFIWAVCTIMNRGKNNINSL
>NC_017218.1|WP_014484088.1|1640036_1640471_+|hypothetical-protein
MASLLQGFEEVQLVKPVGKTVMTVTDSVVRFNKATAEVLNFPAQVKILINDKTRQIAVTPTTAKANNAVKFSKGEGKQTTSVSIKNAVLVEAISKYFTLVEAPEGEVSFASVNGTAYPEDKTVIFDVANATAGTMKRRGRKKAE
>NC_017218.1|WP_003828384.1|1638298_1639735_-|polysaccharide-biosynthesis-tyrosine-autokinase
MTIADLLQIVRKHLASAIISFVVVFAAVAAVTFIMPPKYTATAEVFATYAGQSGETQTTNDMSSGANYLNTQIKTYPELVKTEAVLQPVIKDLGLDMTTTDLAGVVTATNPTNTFMVDISAEVDDPQQAADIANSVAKNLSDQISSDLYNNSSSSGSPIKLTVVQKAQTPTGQSSPNIPLYLAMGLILGIIVGIGVALLEDILNTKVDSTDDVRELTHASSLGTVPQATILDDSRPVVVAQPAGSEAEEFRRIRTNLSFLTTTATQGHGRLLVITSTDPSEGKTTVSSNVAVALAEEGKSVLLIDADLRHPSMAHKLGIEGHVGLSHVLSRQASPADVIQKYWKPNLHIMPAGKRPANASILLNSDLMKEMVEQALTQYDYVIIDTAPLSVASDATVFGRMAGGLVLVTGKGVVEKKELENTATALQAAEVPILGFIFNFADPKKIHSKNYYYYYYEDGNKRSSHKGAKSKGEKKARK
>NC_017218.1|WP_014484096.1|1660651_1660885_-|hypothetical-protein
MTMVESLPTYSSAEAEARSKGDNLISMINVYLAGYAAAGMPVDVETTGKTLHALPADTVLRTDADFDAFEHEVLGDD
>NC_017218.1|WP_003833383.1|1661346_1661637_-|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVNTETPDGKRRLRSVAKTCMKYGQRVQNSVFECSVTPSDYLILKHDLAEIMDEMCDSLRYYNLGSKYASKIEHRGRQRHVPVDGVMML
>NC_017218.1|WP_014484097.1|1661693_1662725_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVTSEDVYLSLKNDNVIVQQGDNTLGRIPLRSLESIISFSYKGASPALMGKCSELGVGLSFFSPRGWYYCSILGEKNRNVLLRREQFRFADDESEALPFARSFIIGKIYNCRWVLERTKRDHALRVNSERIAAQSEKLRQSLANVRNCTSIDELRGVEGLAAKDYFFTFDNLILRDKDDFFFQQRSRRPPLDRANALLSFVYSLLTSDCIAALQGVGLDPYVGFLHTDRPGRASLALDLVEEFRPAIADRFVLTLINTGVIKPSQFEVRENGGVFLSEGGRKTVLAAWQKRKQETITHPFFGEKIPWGLVPHVQALLLNRAIRGDLDAYPPFMWK
>NC_017218.1|WP_014484098.1|1662726_1663416_-|CRISPR-associated-protein-Cas4
MKEPTDYPEDDWLALSGLQHFAFCRRQWALIHIEQQWQDNYLTTAGSLEHDRAHDYSESETRGNLLIMRDLRVFSRRLGITGACDVVEFRQSDEGVPLHGRAGTWLPYPVEYKHGVPKQVDADRLQLCAEAMCLEEMLACSIPEGSLFYQQTKRRERVQFDESLRGQIVAMTSEMHDLFSRGHTPKVRPSKACRACSLSDICLPKIAKTRSAHQFIEESVQAGVEGVAG
>NC_017218.1|WP_014484099.1|1663454_1664306_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQHKIDFVLTFAVENANPNGDPLNGNRPRTTAEGLGEMSDVAEKRKIRNRLQDAGERIFVQSTDRTDDGEKSLSDRWKAFTKTLSKEDQKDREALSYRACEQWIDVRSFGQVFAFKGKEKEGDASVSIPVRGPFTIQSAFSLEPIAIDDVQITKSVNGETTDTNKKSSDTMGMKHRVSGRAVYVTHGSISPQLAEKTGFTEKDAEKIKEALLTLFENDESSARPAGSMEVVNLAWFTHNSKAGQYSSAKVHRTAKVDEEGVITVDTTHIPGLHYEVLEGR
>NC_017218.1|WP_014484100.1|1664309_1666268_-|CRISPR-associated-protein-Cas8c/Csd1,-subtype-I-C/DVULG
MSLWSSLLQTYDAVNSSAGITPLNEDVNKTLLPLYHTTLKTQLQVTLDENGYPTIKRDNADIEIIAPCTEQSMGRSGTVLPPHPLFDQLQYIDTNYDPVKHESYLSQLASWKGDNAKLNAIYQYLSQHSIIEEARAQGIGIDPKKDSKIGVRFAVHVRHGDYEPNVWADHAIRDLWIAHEEQVRHGASLGTDLFGETLYKPSTNFPKKIVNVNGNAKLISANDNTNFTFRGRFANRDEALSIDTLTSQKIHTTLRWLAANNGTLTGSQDIVIWAIDGHPTDNVFDPTGNSRDVAEQVDDRTDSEKLIDANVQTYANYAKQFGKLLRGYGNEKVLQQMQQHSRRIVVTIFDAATSGRLSVTFYRELSQNEYIESVLQWHEDAAWYLTCFDNKNSASTDDEAPRGSKKSSDKLKPIPYIGAPSFADIINCVYSTDDHSSDSYRRFAKYVKKQLVECMFSNAGLPASLLQPAFHKVIRPLSYDSLSVWQHDFEVACSMWKKYYIDQDKRLPLNERNNITMDLDEKRTDRDYLFGQLLALADNYEYRVLLRQSGGRTPDRTTNAVKLMNNFVAKPSTTWLTLRQQLNPYIISSTNGMFFQNEVDEVMSKFKEGDFESNKPLSSLFLLGYSHKRRQLIQRADAAKQLKEQNIENKGE
>NC_017218.1|WP_014484101.1|1666980_1669419_-|CRISPR-associated-helicase/endonuclease-Cas3
MGHALMPKDLLLARKDDDGNTQTLYDHLHNTAKLAAGFEKRSSVTAFAAGLLHDSGKATDDFKRYLLTGNRKRGEVVHAKQGAFIVDDCAADFPSSAASMITAEVLELAIANHHGHLPDCLDACGGTAYFRKLTGENKKAEQYHYQEVLSHVSSLNLDINTNFANSVAETNRLLETVDSCGISPRNTRNSRSFFLGLYAKYIYSRLVDADRVDAANFTAHQPYTSQTPNWEELTRRLENAISGFDTSSKISKIRMRISEDCLAASTRDTGIYRLGVPTGGGKTLASLRFALHHAQETGKHHIIYITPYLSITEQTVQVFRNVLDLDKDDEILLEHYSSVVPDKDDEKEQQRRLAAERWDKPIIVTTMVQFLETVMSAKATKLRKFHNLADSVIVFDEVQALPTNTINVFNEVVSFLSKILGSTILLCSATQPLLEQTDRRNLLLSDKPDLIDPDNDYAEQLRRTNIVASSQGLTLDDFAAEIYSKALDNGNCLAVVNLKGEAKQLYQLVKELDVDHRFTLVHLSTAMCGAHRKNQLAVLKKCLPKKTGDSGQPVICISTQLIEAGVDISFSCVIRAMAGLDSILQAAGRCNRNGESQMPRNVYVYPIKDESGLRYLPEIQLGKEITDQLIHDYPEQDLLSAFMIEEYYRAYLIRYPKLVDSKSRNIGTMDYSILGGEETVYDLLSFNRRRRGLYCNRVGEQYPYAFAQAFQTVGDSFHVIPGGTTDVVVHYGQAMELIDQLSGEGDFASKIKILRSLQEYTVSLFDYEFKALDKSKSIGEANGDFGILVLNEENYSQDFGFLLKAEMPLLMK
>NC_017218.1|WP_131068280.1|1670077_1670620_-|hypothetical-protein
MRQMWGAWPAVRPAGRAPLAASRHRLRQAPAGARAPEGRLRGARGDRRDGAVARRKSAYTRDFERQVAWLSVHAPRSAVSALMRVDWKSVGPICRRVPLGHRGVLEARREDRPPPLRHPAHHPVRTIQRSPGGRQQQDQDHHQDRLRLQEPRQPHRPGHAQMRRPQPPTPRTPITRKPDQ
>NC_017218.1|WP_014484103.1|1671037_1674346_-|mupirocin-resistant-isoleucine--tRNA-ligase
MSENVYPKANEGGETAHVAPNPSFPQMEETVLNYWDKDDTFQKSVERNPSGDHSQNEFVFFDGPPFANGLPHYGHLLTGYAKDVIPRYQTMKGRKVNRVFGWDTHGLPAELEAQKELGIDSVDQIEKMGIDKFNDACRASVLKYTHEWQDYVHRQARWVDFEHGYKTLNIPYMESVMWAFKQLYDKGLAYQGYRVLPYCPKDQTPLSAHELRMDADVYQDRQDTTVSVAVKMRDEEDAYAVFWTTTPWTVPTNFAIVVGADIDYVEVRPTEGKFAGKKFYFGKPLLEHYTKELGENYEVVRELKGSELAGRRYYPVFPYFAGEKAETEGNVPGPNGYTIFTADYVDTVEGTGLVHQAPYGEDDMNTLNAHGVKSTDVLDAGCRFTSQCPEYEGMYVFDANLPILRNLRAGDGPLAEIPEDQRAILFQEKSYVHSYPHCWRCATPLIYKPVSSWFVSVTKIKPRLLELNQQINWIPGNVKDGQFGKWLANARDWSISRNRFWGSPIPVWVSDDPKYPRVDVYGSLEELKADFGDYPRDEDGNVNMHRPWIDNLTRVNPDDPTGKSHMHRISDVLDCWFESGSMSFAQFHYPFENKEKFEQHFPADYIVEYIGQTRGWFYLLHVMATALFDRPAFKNVICHGIVLGSDGQKMSKHLRNYPDVNGVFDKYGSDAMRWFLMSSPILRGGNLIVTAEGIRDTVRQVMLPVWSSYYFFTLYANAANGGAGFDARRLRADEVAGLPQMDRYLLARTRRLVERVEKSLNEFAISDACDAVSDFIDVLTNWYIRNTRDRFWNEDANAFNTLYTVLEAFMRVLAPLAPMEAESVWRGLTGGESVHLADWPYVVDEKTGADTELGRVLVDDPALVSAMEKVREVVSGTLSLRKAAKIRVRQPLAKLTVVAEDVDAVKAYDELLKSELNVKDIEFCTMEDAGSRGLKIVHELRVNARAAGPRLGKQVQFAIKASKSGDWSVNASGAPVVSTPSGDLELVEGEYELINRVEEENAAEAAASVSAALPTGGFVILDTALDDDLLAEGYARDAIRVVQDARKAADLDIADRISLVLTVPAADVAKVEQFKDLIAHETLATSFEVKEGAELAVEVAKA
>NC_017218.1|WP_095256878.1|1675018_1675984_-|ribokinase
MLGLLDDIVASRSRISVIGSMNVDYTVTTKRLPKPGETVNGGPLTLLPGGKSANQASAAARIGAQVRMFGAVGEDANADFLLEHLRDAGVDTSHIAAVAGPSGTTVITVDANGENTIVYSAGSNGEVSVDYVRQSSDALVAADVLGLCLESPMETVTACARLCHDAGLKVLLNDSPFVAELPAELIEASDILLVNEHEMAQLLGIAEPDDDDWDGLDWSDVARQMHDFGFNQAVITLGGDGSVVIDGDDIYRIAPVAVEAIDTTGCGDAFMGTVLAGLASGHALADSAQLASYVSAYAATGFGAQASYGTAAQIRERFGAK

Crispr_ID: NC_017218_7

• CRISPR_ID: NC_017218_7
• CRISPR_location: 2050761-2050907
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NC_017218_7

Consensus_repeat	Method
AATCTCCTAAAATCCTGTCACTAAG	CRISPRCasFinder
GCACAATCTCCTAAAATCCTGTCACTAAG	PILER-CR

spacers of NC_017218_7

>7.1|2050786|36|NC_017218|CRISPRCasFinder
TCAAAGCCAATGACAGATATTGAGGAAACCAACCCC
>7.2|2050847|36|NC_017218|CRISPRCasFinder
ACTCACTTAGCGACAGTAATTTAGGACGACTGGGAT
>7.3|2050804|24|NC_017218|PILER-CR
GAGTCAAAGCCAATGACAGATATT
>7.4|2050868|32|NC_017218|PILER-CR
ACTCACTTAGCGACAGTAATTTAGGACGACTG

CRISPR arrays and Neighbor proteins around NC_017218_7

CRISPR arrays

The CRISPR arrays of NC_017218_7

>merge|NC_017218|7|2050761-2050907|CRISPRCasFinder,PILER-CR
TTCGTCCTAAAATTCTGTCACTGAGTCAAAGCCAATGACAGATATTGAGGAAACCAACCCCAATCTCCTAAAATCCTGTCACTAAGACTCACTTAGCGACAGTAATTTAGGACGACTGGGATAATCTCCTAAAATCCTGTCGCTAAG

>NC_017218|7|7|2050761-2050907|CRISPRCasFinder
TTCGTCCTAAAATTCTGTCACTGAG	TCAAAGCCAATGACAGATATTGAGGAAACCAACCCC
AATCTCCTAAAATCCTGTCACTAAG	ACTCACTTAGCGACAGTAATTTAGGACGACTGGGAT
AATCTCCTAAAATCCTGTCGCTAAG

>NC_017218|7|6|2050764-2050907|PILER-CR
GTCCTAAAATTCTGTCACTGAGTCAAAGCCAATGACAGAT	ATTGAGGAAACCAACCCCAATCTC
CTAAAATCCTGTCACTAAGACTCACTTAGCGACAGTAATT	TAGGACGACTGGGATAATCTCCTAAAATCCTG
TCGCTAAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017218.1|WP_014484314.1|2040223_2041846_-|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl|CDD|227136
NC_017218.1|WP_003829777.1|2057705_2059397_-|GTPase-ObgE	unknown	unknown	gnl|CDD|237045
NC_017218.1|WP_015439254.1|2056465_2057599_-|glutamate-5-kinase	unknown	unknown	gnl|CDD|235460
NC_017218.1|WP_014484321.1|2053760_2054966_-|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl|CDD|235596
NC_017218.1|WP_014484315.1|2041838_2043707_-|biotin/lipoyl-binding-protein	unknown	unknown	gnl|CDD|227111
NC_017218.1|WP_003831622.1|2053203_2053431_-|preprotein-translocase-subunit-SecE	unknown	unknown	gnl|CDD|236066
NC_017218.1|WP_003831625.1|2051021_2051975_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_106630772.1|2044276_2044819_+|biotin-transporter-BioY	unknown	unknown	gnl|CDD|376871
NC_017218.1|WP_014484312.1|2029455_2029887_+|flavin-reductase	unknown	unknown	gnl|CDD|377026
NC_017218.1|WP_003829785.1|2049973_2050405_-|50S-ribosomal-protein-L11	unknown	unknown	gnl|CDD|234661
NC_017218.1|WP_025300058.1|2048135_2048993_+|polyketide-synthase-regulator	unknown	unknown	gnl|CDD|225306
NC_017218.1|WP_014484319.1|2045951_2048057_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_041473310.1|2030701_2040184_-|type-I-polyketide-synthase	unknown	unknown	gnl|CDD|227315
NC_017218.1|WP_155115198.1|2044820_2045780_-|biotin--acetyl-CoA-carboxylase-ligase	unknown	unknown	gnl|CDD|223417
NC_017218.1|WP_014484322.1|2055107_2056370_+|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl|CDD|213024
NC_017218.1|WP_003829782.1|2052343_2053171_-|transcription-termination/antitermination-factor-NusG	unknown	unknown	gnl|CDD|180161
NC_017218.1|WP_003829776.1|2059463_2059715_-|50S-ribosomal-protein-L27	unknown	unknown	gnl|CDD|235464
NC_017218.1|WP_014484324.1|2059737_2060046_-|50S-ribosomal-protein-L21	unknown	unknown	gnl|CDD|235510
NC_017218.1|WP_014484325.1|2060232_2063304_-|Rne/Rng-family-ribonuclease	unknown	unknown	gnl|CDD|273254
NC_017218.1|WP_003829786.1|2049265_2049958_-|50S-ribosomal-protein-L1	unknown	unknown	gnl|CDD|180071

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017218.1|WP_014484314.1|2040223_2041846_-|acyl-CoA-carboxylase-subunit-beta	gnl|CDD|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NC_017218.1|WP_015439254.1|2056465_2057599_-|glutamate-5-kinase	gnl|CDD|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	1.3328e-175
NC_017218.1|WP_014484321.1|2053760_2054966_-|pyridoxal-phosphate-dependent-aminotransferase	gnl|CDD|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NC_017218.1|WP_014484315.1|2041838_2043707_-|biotin/lipoyl-binding-protein	gnl|CDD|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_017218.1|WP_003831622.1|2053203_2053431_-|preprotein-translocase-subunit-SecE	gnl|CDD|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	4.48776e-12
NC_017218.1|WP_025300058.1|2048135_2048993_+|polyketide-synthase-regulator	gnl|CDD|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.77745e-16
NC_017218.1|WP_014484312.1|2029455_2029887_+|flavin-reductase	gnl|CDD|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.42793e-15
NC_017218.1|WP_003829785.1|2049973_2050405_-|50S-ribosomal-protein-L11	gnl|CDD|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	8.69761e-91
NC_017218.1|WP_003829777.1|2057705_2059397_-|GTPase-ObgE	gnl|CDD|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
NC_017218.1|WP_041473310.1|2030701_2040184_-|type-I-polyketide-synthase	gnl|CDD|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0
NC_017218.1|WP_155115198.1|2044820_2045780_-|biotin--acetyl-CoA-carboxylase-ligase	gnl|CDD|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	6.678e-31
NC_017218.1|WP_014484322.1|2055107_2056370_+|polysaccharide-deacetylase-family-protein	gnl|CDD|213024	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins. This family contains an uncharacterized protein yadE from Escherichia coli and its bacterial homologs. Although its molecular function remains unknown, yadE shows high sequence similarity with the catalytic NodB homology domain of outer membrane lipoprotein PgaB and the surface-attached protein intercellular adhesion protein IcaB. Both PgaB and IcaB are essential in bacterial biofilm formation.	9.65393e-62
NC_017218.1|WP_106630772.1|2044276_2044819_+|biotin-transporter-BioY	gnl|CDD|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	7.48792e-26
NC_017218.1|WP_003829782.1|2052343_2053171_-|transcription-termination/antitermination-factor-NusG	gnl|CDD|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.58026e-66
NC_017218.1|WP_003829776.1|2059463_2059715_-|50S-ribosomal-protein-L27	gnl|CDD|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	5.68869e-49
NC_017218.1|WP_014484324.1|2059737_2060046_-|50S-ribosomal-protein-L21	gnl|CDD|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	4.17736e-35
NC_017218.1|WP_014484325.1|2060232_2063304_-|Rne/Rng-family-ribonuclease	gnl|CDD|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	2.77576e-152
NC_017218.1|WP_003829786.1|2049265_2049958_-|50S-ribosomal-protein-L1	gnl|CDD|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.72993e-143

Protein sequences

>NC_017218.1|WP_003829785.1|2049973_2050405_-|50S-ribosomal-protein-L11
MAPKKKVSALIKLQIQAGKANPAPPLGPALGSHGVNIMDFCKAYNAQTQDKMGQVIPVEITVYEDRSFTFVLKTPPAAALLKKAAGIEKGTENPLTHKVGSVTKAQVREIAETKMEDLSARDIEAGMKIIEGTARSMGITVTD
>NC_017218.1|WP_003829786.1|2049265_2049958_-|50S-ribosomal-protein-L1
MVKRSKKYREAAERVDRNNLYTANEAIALLKSMPSYNFDQTVEAVFRLSVDPRKADQLVRGTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGVPVDPNTLA
>NC_017218.1|WP_025300058.1|2048135_2048993_+|polyketide-synthase-regulator
MSDFLELLAADAANSSDFTDRSGISATDRARTVLFECLFNHLADDRVASLFTILGFEHDFTCYAIAGYPARSAARSRVDIEKIVADFGGTCLTAERPITGLTGADNGTGRTAVVALIRPVGAATPEIICNTIAPAFDADRPIALGSQRTGAEGAMRSVQATLYCLRAAPALAATAQSLPRPLRTDDALPERALIGDEDARDELIRVVYGSLTAAGPDDPTLLTVSTFLKYGGSLETCAKELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRMATAQ
>NC_017218.1|WP_014484319.1|2045951_2048057_+|hypothetical-protein
MTSPASSLPAAAAHPRLDRVGAAARWTLAVLACLWLALCTAVGPLYWDFENGTIANWNWTNTVFFVLSFAIYLGLIVIMVRFAAGQRVLPRAISGRLSRAGQQHSNQDLKPSQSQSVVADSNVSKRHATVASRFATLGRWITRGTNRFWKLALVFFIGWLWGPTTLLAAFGADIRSQIREFSWAWNQWTGLQQPYIGFFSFVPMDIYPTAHYMWPPDSTYLTDQHNVVLTVFYGAVAAFSRYLTGSNDAGIVALAAGQMLLAVFCCAATANRFLNRPWMGVAQSTKDKNGSSTSTGSVSSTTSARIAQDAAPQLAGGRARFLILVFFLCCPLAVFATISITKSPLFAFSFVWWFGIWYELTQTWKPAGKRKGLTATVPIRLPRHSFVAFVLSTAVMLISAKYAWYIIALQIVLALIADRRRWTTYVVALLIPTMLIHGGISLAISSGAIIGGDPIESRGVQLQMIARVASRNPEGISEEAKKNLSDVFNLDQMADAYSQQDADPVKSSGIQAKKVSYKWRTVTPEDMTNFNKAWFEIVKDNPVIALDALLAKCFGYFNVTDQPYVSMDYYVTSDYVQKNSTWIKSYNHNWRERITGFTRSWGKIPVIGWITHGNFYVVMTLLIGAAEVIRRRWLTLMTHIPLLLLMGVMITAPANNFERHMLPVAFVFGFVVLTYWRESLAERRIARQAQSSASTTMTLPQ
>NC_017218.1|WP_155115198.1|2044820_2045780_-|biotin--acetyl-CoA-carboxylase-ligase
MGGSVRFFARHRESGRANRGNVVPMMIALQAATPQLPRTKAVADQVVAVDETDSTNALAARMIGDGSLTLPERKGGTLAVGVVATDWQSAGRGRNGHTWISQPGRCSTMSYAVRIPRAIATDESVNGWLQMIAGLVTLDALNGMIKEYGAAPNKQDCFLELKWPNDVFCHGLKLGGLLSELVLLPDGESGDDVVVVFGVGLNLALGASRLPTPQSTSLQLHVSGLPSFNEMRDAVAEREVEGFRERLAAFIADPHGQAEALREEMKAVCWARGRQVEAHFTDGTTLIGEAIGLNEDASLILRTEDGTDHTVRTADVGVL
>NC_017218.1|WP_106630772.1|2044276_2044819_+|biotin-transporter-BioY
MVAASWKPALFAVLMWLSAAAGAIPIPGTPVPITLQTFVVMLAGLMLPWRQAGSAVAAYLAAGAVGLPVFAGGASTMALVGPSAGFLFGFLPGVIVIALLRGKANTSSASAAALTAGRYLLAALVGGVVVVYAFGFVIQSALTGVPIAAVALASMGFVAGDAIKAVVASLAAAGLSKLGR
>NC_017218.1|WP_014484315.1|2041838_2043707_-|biotin/lipoyl-binding-protein
MAHTVKKLLIANRGEIALRVVRTAKEMGISTVAVYSEQDRNSRYVDMADEAYLLSGDTYKDTYLNEDLLIDILHKTGADAVHPGYGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPFLPEEIVSTLEEYSRRLFTTVGYVGLGTCEFMVTPNGKVYFLEVNPRLQVEHTVSEEVSGLDLVREQLNIAAGGELTRAPEPRGHSFELRITSEDPATNLTPGSGTLEKIQWPAGPGVRIDTGVEQGDTISPKFDSMMGKVIVTAQNRLDAVARVRRVLDELVIEGVPTPIPLFKEIFRNDDFTAENGHPFSVSTKWLERTYLNRTPASASSGQPASLAGAAAPAAPDKSTSETFVIEMNNRRVKLTVPLDIVENITGSARARGAKRPTQPLRGAGLHNVASGAAKANDGAKSGVIASPMQAVVTRINVSEGQQVAKGDLLVVLESMKMENYVYAPAAGEVKKIFVGPADGVEAGDTLVTLDVAKAEDSKKEGGND
>NC_017218.1|WP_014484314.1|2040223_2041846_-|acyl-CoA-carboxylase-subunit-beta
MTDIMDSPAVNAVTAASATNASQPPAHQPLRTAVVKAAELARAAEERARDKQHAKGKKTARERLDLLFDTGTFEEIGRFQGGNIAGGNAGAAVITGFGQVYGRKVAVYAQDFSVKGGTLGTAEGEKICRLMDMAIDLKVPIVAIVDSGGARIQEGVAALTQYGRIFRKTCEASGFVPQLSLILGPCAGGAVYCPALTDLIIMTRENSNMFVTGPDVVKASTGETISMADLGGGEVHNRVSGVAHYLGEDESDAIDYARTVLAYLPSNSESKPPVYAYAATRAERETAKRLATIVPANERQPYDMLEVIRCIVDYGEFVQVQELFGASALVGFACIDGKPVGIVANQPNVLAGILDVDSSEKVARFVRLCDAFNLPVVTLVDVPGYKPGSDQEHAGIIRRGAKVIYAYANAQVPMVTVVLRKAFGGAYIVMGSKAIGADLNFAWPSSQIAVLGAAGAVNIIHRHDLAKAKASGQDVDALRAKYIKEYETSTVNANLSLEIGQIDGMIDPEQTREVIVESLATLATKRRIKRTTKHHGNQPL
>NC_017218.1|WP_041473310.1|2030701_2040184_-|type-I-polyketide-synthase
MSTFFLNRLTTDPHALAFAGQSTPWPVALADQTTDPSLDEALRGHVAAANRLLSPAAADLLATTGRPVDLFGFTPNPARLGAAADATASVEGVALTQLGALLDLEHLGYSVAQAKPVAVLGHSQGVLAVHMTRAIEAAGSIEAAGKTLDEILAVAALIGAAGTRRVRELGLNPKYGEASPMLSVKGATREQVEALVKRVNNARGPISIAVTNSDNHHVLSGYPEDLAALALEAEREHKHQAKLREQKLHGGTVFNPTLEYLEVTLPFHSPLMAEAVEQTVSWAGACGFDQDRTRALAEEVLLSHVDWNARVKALFNAADPAKLWIVDLGPGNTLGKLIGNVVQGTGIGVVEATTLSERSALSTLESEPERTQNWKALAPRVIETPAGAKLVTKFSKLTGKPPVLLPGMTPTTVEPEIVAAAANAGYWAELAGGGQVTAEVFDRHIAALEDELEEGRTVEFNAMFMDRYLWNLQFGSSRIVPKKRASGAPIDGVVVSAGIPELDEAVELIKNLQADGLPYVSFKPGTVDQIRQVVRIAKAVAPTTIMIQVEGGEAGGHHSWEALDDLLAATYAEVRACDNLVLVAGGGIGTPERAADYISGQWAHAYGLPDMPVDGVLIGTAAMTAKEAHTSPEVKQMLVKTPGIPADAKSDDVFAPQAAHWVPSGKSVGGMSSGLSHLHADIYELENDSAECGRLLVRVMKHPEELDSRRKEIIEALNKTAKPYFGDLASMTYLEWAQRFAELAFPWADPTYADRFQHLLQRIEARVSDTDSGEFTSKLFAADGTSAEDAAAAGLLTRDNILADPAPALEKLALAYPQVAELKVVPADVAWFPVLVREYPKPMPFVPAIDNDLLRWWGQDQLWQSEDQRYSADSVRAIPGPISVAGITTVDEPIADILGRFENAAIERVKAEQNAAENNDFAALGEAVSAEDFIRKSPNISWVGHITDNPAYGTALGDRYYEIRAFDAAAGKYDLDIHLDTYWDNDPDGGTSKHAVRDIVIPLIVEGTEPGRVPVVDRERLIPDVYAMLAATAGIGNTAITGDKLTAMPTLSVPSDEGAVTANAVTEGETAQNRPFGTATATYTLSANLGFDHEAATGAALPSTLQPSRIAPDALVGPAWPAIYTALGSVYVKGYPVIEGLLNAVHLDHLIELEVNEEDLLKHTGETITLKSWAEDYFESASGRVVTIHVTHTAADGTLLARETERFAIRGRVYSDALPADAPEFGDAEHAEVAPTPRRLLRRVKVVAPHDMTAFARTSGDFNPIHTSTRGARISGLAAPLVHGMWLSATAQHAVQALDEKGAHYEIAGWTYNMYGMVQLDDTVEISVERVGKVRHGGMTLEVTCRIDGQLVSRGTALVRAPRAAFVYPGQGIQKQGMVLDERAKSAAARDVWERADKLTRAKLGFSILGLVRDNPKELTANGVTYRHPEGLLNLTQFTQVALATVAFAQTARLREAGADIWPAYFAGHSLGEYNALSAFADVIPLETVLELVFHRGSTMHHLIERDAQGRSNYRMGALRPNQFGVDDAHVKEYVESVAKASGEFLEIVNYNLAGQQYAIAGTIAGLKALKADSARRVAAFGGKPAFMLVPGIDVPFHSTLLRKGVPEFRDKLDALLPAYIDYRGRLVDRYIPNLVASPFEMTKEFAAKILEVVPSERIKAALDDPAVWDSYAADDQKLGRLLLTELLSWQFASPVRWIETQALLFGKREQGGLGVEEYVEVGLGNAPTLANLGAKTLRLPEFAGNDTVVYNVGRDEGRVYMTDTDSLVPDDEPEETAAPVETAPAGGSAVAKLGSSAAADAAPAAAAAPAPAAPVSAAPAGAPSGAAVADLPFKASDGIGVLMAYAAKVRLDQIGSNDTTDTLTNGVSSRRNQLLMDISSELGVASVDGAAEATLDKLAQIVNKAAPNYKPFGAVLSEALRDRLRSLFGAAGVKQQYIRDRVANVWQLGEGWVASVLAALLLDTREGSSSRGGDLAKLPTAAVQNKPEADKLIDAAVEVVAQLKGVAVALPSAGGAAGGAVVDSAALDAFAEKVTGSNGVLAATARFVLNELGVAAPAPEESEDENAAVVAAVEAELGSDWPKQVAPRFDANKAILFDDRWASAREDLARAYYDNDPAALNGSFIGLGKTIAAEAQWFADKSNNDELKAAFQKAASEALESVTSDKNASRYANDIAIVTGVSPNSIAAQVVEGLLAGGATVVATSHSFKPSIKAWAKQAYREHATGNAKLWLVPANLSSYRDVDALVDWVGHEQKKTSGATTTILKPAWEPTLFFPFAAPPVHGTLADSGDLFESQARLMLWGVERAIAGFSHIGADTNVQHKLHVVLPGSPNRGVFGGDGAYGEVKSAFDAIVNRARAEKVWSSRVTFAHPKIGWVRGTGLMGGNDPLVAVVERHGIHTYSTAQIAAKLLDLCTAESREQALKAPLDVDLTGGLGSEPIDIKALRAEAMADAEKEASSEKAAIEGEKPEGGAAGSTLKALPTPIVTKQASVDLADWQNVTARPEDEIVIVSVGELGPWGSGRTRTQAELGIHPDGTVDLSAGAVLELAWNMGLLTWADSPKPGWYDTDGNLVPEEDIAERYHDEVVARSGIRPFEEGMGDDYKDGADEEEAEVFLDHDVTFSVPTREVAAEYVKLDEAHTTIAPDEESGEWNVTRHAGSMIRVPRRATMTRTVGGQFPKGFDPTRWGIPASMVGDVDKIALWNIVTTVDAYLGAGFTPAEILESIHPSLVASTQGTGFGGMMSMRKLYLDRFLNHEIPTDILQEALPNVVAAHVMQSYIGGYGNMIQPVSACATAAVSLEEGVDKIALGKADFVVTGAIDDIGVESVIGFGNMNATANSEEMYGKGIDARFFSRANDRRRGGFLESQGGGTILVTRGDIAEKLGLPVAAVVGFIHSYADGAHTSIPAPGLGALAAGLGGKDSKLVHDLAKLGVSADDIAVVSKHDTSTNANDPNESELHNTLAHAIGRTDGNPLFVISQKTLTGHAKGGACIFQVNGLTQLFKSGVIPANASLDCVDPKLQRDDHMVWIRKPLRIGGGEDEFGRETAGRPVKAGLATSLGFGHVSGFVALVHPGAFEAAVAKADGEAALEAWRERANARLAAGQRHLEEGMMGRAALYEPIDNRRFHEDHRGYDHHEVEKAMLLNPDARLGADGYYEA
>NC_017218.1|WP_014484312.1|2029455_2029887_+|flavin-reductase
MRALPTTNANPPAAVAAARKAVVEADGVWIFSPEYNYSYPGVLKNLLDWLSRPLEPFPAESASVMVGKKVALSAAAGQSAGAGTLAKLNEVLGFGKTELLPTDKQVGVALAPEAWGTGKLTLSDEDEARLAAEADAFLALVAE
>NC_017218.1|WP_003831625.1|2051021_2051975_+|hypothetical-protein
MKTHKEVAALLQTAQREQRCAIGDGGKLYTALRRRTKIGEVVSPYPNLFAATSYWKSLNVEQQSMHLIRALAKVHPTWTFAGLSAACVYQYEHSYSLHNGTVDIVSPKGANCGGASGLNRIYMARCSQYRCQGILVTSPARTLIDCASLPFDKALAIYDSALRLQHVTKLDVETLIVQTDCNETNVKRLLRYANPLRENGGESWTYARIRQLGFAEPLFQTEFDNPANPEMPYRVDFCWKLHDGRIIVVEYDGIAKYRDTSNPNRANLMAKFEYERQRDTNLKTQGVTSIKHLFYEDVSDLKRLNALLTAIGIPKIR
>NC_017218.1|WP_003829782.1|2052343_2053171_-|transcription-termination/antitermination-factor-NusG
MSDELNLENLDAALENVDAAADEAPVADAPAEAVESAEPVAEAPVASPETVAESAEEESEVNESEQAEETDAGQKAVDEFSKSLRTLDGKWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPGYVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDKPAAAKKRKVEVSYAVGDQVTVTDGPFATMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFHQVQKLD
>NC_017218.1|WP_003831622.1|2053203_2053431_-|preprotein-translocase-subunit-SecE
MAKTSTNEKAVKPNVFMRIGLFIKQIIDELRKVVTPTAKELFFWSLAVFIFVLLLMALVTGMDFGLGKATLGIFG
>NC_017218.1|WP_014484321.1|2053760_2054966_-|pyridoxal-phosphate-dependent-aminotransferase
MAQWQILSDRINTVAPSATLAVDSKAKAMKAAGLDVIGFGAGEPNFPTPANVVKAAADACLDPKNYKYTPTPGLPELREAIAAKVLRDSGYEVSADQVVVTNGGKQAVYEAFQILLNDGDEVIVPTPYWTSYPEAVKLADGVPVEVFAGADVNFEPSLEALEAARTERTKAIIVNSPNNPTGAVWKPETVEAIGRWAVEHHIWIISDEIYEHLNYDDARTTYIGAAVPECRDQLLVLNGVAKTYAMPGWRVGWMVAPAEVAKAATKLQGHMTSNVANISQRAALAAVSGPLDEVYEMRKAFDVRRRAIVAALNDIEGVYCPTPTGAFYAFADITALLGKPLGSNGTVCATSADFAAALLDEAHVAAVPGEAFGAPGYLRFSYALADDDLAEGMKRFKDWAK
>NC_017218.1|WP_014484322.1|2055107_2056370_+|polysaccharide-deacetylase-family-protein
MAKHHESHGSRGTRRSTVEPRVAYSRHAETHSAHGSQLHYGQHASHRSAAAIAAQHTRRIAVLVVAAVVAVALAITVGVIAHGWFARQSAPSMQQQLPTTAHKSLTRKTVPQLDPGNIVIGVNGSETTYVLKGEQYVEGGAHAIEPEDGVLTGNIVTTGTVDTNTPGDYTVQYTVHDSTGHEASATRTVKVVDTMDKQTGGIPVLMYHYVYDPANPPADVDANWIPTTSLEPQLQYLTQNNFYYPSWPEVRAFIDGKHSLPKNSIVMTFDDGEPHFFQYGTPLLAKYKVPATSFIIGADGEALNKMKTYATPYLEYESHSFDMHRAGGTVGHGGRISAMSHQEIVDDLKQSEQVTGSLQAFAYPFGDTTPDAIEAVRETGTLAAFTTQYGWADVGADPMNLPRVRIQGTGSLDTFIAVIQ
>NC_017218.1|WP_015439254.1|2056465_2057599_-|glutamate-5-kinase
MSTPSQAEVRRMIAAAGTIVVKVGSSSLTQPSGHLDPDKLDALTAALAQVRLMGARVVLVSSGAIAAGFGPLGFDERPADVATQQATAAVGQGLLMARYEAAFGRFGIRVGQILITAEDTIRATQYRNVERTLDRLLDLGVVPIINENDSLASNEIRFGDNDRLSALVANLVRAEALVLLTDVDALYTAPPAQPGSRRVEYVPNVIDALGDIQVSGSGSKVGTGGMVTKLEAARVAAVSGIPTVLTCASNAGPAMMGDPVGTVFAPVKARGSSRRLWIGFAAEPRGTIVVDAGAAKAIRGGRASLLAAGALDVHGDFSAGDPVWIDDESGTHLARGLAGFDSEEIPQTLGRNTAQLKRFLGDQYAHPLVHRDNLVLV
>NC_017218.1|WP_003829777.1|2057705_2059397_-|GTPase-ObgE
MSDFVDRVTVHVRGGDGGNGSAGIRREKYKPLAGPNGGNGGDGGSVVFVADRNATSLLDYRFMPHRTAGNGTMGLGDNKDGSKGEDLILPVPCGTVVFEARGEQGKTKHPGEQLADLRHEGDRVVVAQGGAGGLGNIALANKTRRAPGFALLGELGEERDVILELKSIADVALVGFPSAGKSSLIAAMSAAKPKIADYPFTTLVPNLGVVIAGDSRYTIADVPGLIPGASEGKGLGLEFLRHIERTEIIAHVIDCATLEPDRDPMSDYQALENELALYADKLELPLGAIPIPERPRIVILNKIDVPEAKELAEFVRPEFEKLGLKVFEISTASHEGLKELNFALAELVHEMREEVASREEAEEEARVVIKPLERTGRRPRRADEGGNALDFTVERRELGNGEVFYEVRGAKPERWVMQTNFDNDEAVGYLADRLAKLGVEDELRRKGARPGDEIRIGRGDRMVEFDWDPTISAGAEMLDGSNLGARGKDLRLEEQDPRAHRRSNAERRAQYHEMMDARAAVRDAMMAERKAGHWADPTVDDDRHDETSLFGHGESADDSASEE
>NC_017218.1|WP_003829776.1|2059463_2059715_-|50S-ribosomal-protein-L27
MAHKKGASSSRNGRDSSPQYLGVKKFGGEAVVAGNIIVRQRGTNFHAGQNVGMGKDHTLFALADGSVKFGVRRDRKVVDVIAA
>NC_017218.1|WP_014484324.1|2059737_2060046_-|50S-ribosomal-protein-L21
MYAIVKAGGHQEKVEVGDTILVNRLDAKKGDTVEFPVALLVDGAKVTLAAADLAKVSVKAEVVNDEAKGPKINIQKYKNKTGVARRKGHRQPLTIVKITAIA
>NC_017218.1|WP_014484325.1|2060232_2063304_-|Rne/Rng-family-ribonuclease
MPTENREGFVGDETDNSTVSNTESQASGASEPNAEASQPTRRRRGGRRVVRGTGAAGASLELQVQEHAAPLFEAPALPDADASASAETTDNNASDDEKHPARRTRSRRSADNADYEDRSTRRRAVADDDDAPRPVRRRRAVSDDLEEDDERPIRRRRVASDDFDEDNDRLVRRRRSVIDDLEDDDAPRSSRRRTAVDDSDEDGDRPVRRRRSTTNDRDDRDDEPRSARRTRSRRSSEDAREENPDERVLDVIDALPAGHESARRGKPMTSLLFQEPVLPDMRRDDRDDEEDDGEQRSRSSRRSRAREDEADYEERPSRSRRSNRSDHGDHDDRDDHDDRDDSRNNRRRNEAQDDFDADDQSDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDITYSPIAEEENDEESDSTRTRSRRRRRRGSRNESGASNNDSESSENNGDDSRRRRDDRDERDRDDDEEQTVTRRRRRRRGGKNAESGDEQDDQQLTRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREKEHHTQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTEEE

Crispr_ID: NC_017218_8

• CRISPR_ID: NC_017218_8
• CRISPR_location: 2211142-2211218
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017218_8

Consensus_repeat	Method
GCAAATCCCCCAACCAATCGAAGAA	CRISPRCasFinder

spacers of NC_017218_8

>8.1|2211167|27|NC_017218|CRISPRCasFinder
CCACCCCGTCCACGGACCCTCAACGGG

CRISPR arrays and Neighbor proteins around NC_017218_8

CRISPR arrays

The CRISPR arrays of NC_017218_8

>merge|NC_017218|8|2211142-2211218|CRISPRCasFinder
GCAAATCCCCCAACCAATCGAAGAACCACCCCGTCCACGGACCCTCAACGGGGCAAATCCCCCAACCAACCGAAGAA

>NC_017218|8|8|2211142-2211218|CRISPRCasFinder
GCAAATCCCCCAACCAATCGAAGAA	CCACCCCGTCCACGGACCCTCAACGGG
GCAAATCCCCCAACCAACCGAAGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017218.1|WP_014484411.1|2216919_2218248_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|379175
NC_017218.1|WP_003829607.1|2210164_2210866_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213222
NC_017218.1|WP_032734693.1|2194553_2194901_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_003832382.1|2198213_2199155_+|FAD:protein-FMN-transferase	unknown	unknown	gnl|CDD|376782
NC_017218.1|WP_014484408.1|2213628_2214471_-|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NC_017218.1|WP_014484412.1|2219453_2219831_+|DUF4235-domain-containing-protein	unknown	unknown	gnl|CDD|379422
NC_017218.1|WP_014484404.1|2199163_2200993_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NC_017218.1|WP_100199007.1|2218668_2219367_-|histidine-phosphatase-family-protein	unknown	unknown	gnl|CDD|366010
NC_017218.1|WP_014484410.1|2215695_2216712_+|LacI-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NC_017218.1|WP_014484406.1|2204622_2206146_-|amino-acid-permease	unknown	unknown	gnl|CDD|224038
NC_017218.1|WP_106622711.1|2206399_2210155_-|FtsX-like-permease-family-protein	unknown	unknown	gnl|CDD|274008
NC_017218.1|WP_003832377.1|2193891_2194563_+|hypothetical-protein	unknown	unknown	unknown
NC_017218.1|WP_003829606.1|2211348_2212821_+|amino-acid-permease	unknown	unknown	gnl|CDD|224038
NC_017218.1|WP_014484409.1|2214470_2215325_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_017218.1|WP_014484405.1|2201124_2202993_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NC_017218.1|WP_014484413.1|2220862_2223607_+|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl|CDD|224428
NC_017218.1|WP_106622709.1|2195020_2196061_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl|CDD|223390
NC_017218.1|WP_014484403.1|2196690_2198109_-|sodium:solute-symporter	unknown	unknown	gnl|CDD|340890
NC_017218.1|WP_041473318.1|2223606_2225946_+|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl|CDD|224428
NC_017218.1|WP_003829604.1|2212872_2213478_-|DUF624-domain-containing-protein	unknown	unknown	gnl|CDD|377412

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017218.1|WP_014484411.1|2216919_2218248_-|ABC-transporter-substrate-binding-protein	gnl|CDD|379175	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	1.07408e-34
NC_017218.1|WP_003829607.1|2210164_2210866_-|ABC-transporter-ATP-binding-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.59092e-99
NC_017218.1|WP_003832382.1|2198213_2199155_+|FAD:protein-FMN-transferase	gnl|CDD|376782	pfam02424, ApbE, ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. It acts as an FAD:protein FMN-transferase, catalyzing the attachment of an FMN residue to a threonine residue of a protein via a phosphoester bond in such bacterial flavoproteins.	2.74395e-23
NC_017218.1|WP_014484404.1|2199163_2200993_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.75794e-178
NC_017218.1|WP_014484412.1|2219453_2219831_+|DUF4235-domain-containing-protein	gnl|CDD|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	3.00217e-11
NC_017218.1|WP_014484408.1|2213628_2214471_-|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.06048e-62
NC_017218.1|WP_100199007.1|2218668_2219367_-|histidine-phosphatase-family-protein	gnl|CDD|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	5.05315e-50
NC_017218.1|WP_014484410.1|2215695_2216712_+|LacI-family-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	6.82506e-78
NC_017218.1|WP_014484406.1|2204622_2206146_-|amino-acid-permease	gnl|CDD|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	4.24587e-155
NC_017218.1|WP_106622711.1|2206399_2210155_-|FtsX-like-permease-family-protein	gnl|CDD|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	3.74352e-21
NC_017218.1|WP_003829606.1|2211348_2212821_+|amino-acid-permease	gnl|CDD|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NC_017218.1|WP_014484409.1|2214470_2215325_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.2199e-52
NC_017218.1|WP_014484405.1|2201124_2202993_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.04788e-142
NC_017218.1|WP_014484413.1|2220862_2223607_+|YhgE/Pip-domain-containing-protein	gnl|CDD|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	4.77088e-89
NC_017218.1|WP_106622709.1|2195020_2196061_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl|CDD|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	6.8441e-106
NC_017218.1|WP_014484403.1|2196690_2198109_-|sodium:solute-symporter	gnl|CDD|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.87285e-44
NC_017218.1|WP_041473318.1|2223606_2225946_+|YhgE/Pip-domain-containing-protein	gnl|CDD|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	1.78379e-87
NC_017218.1|WP_003829604.1|2212872_2213478_-|DUF624-domain-containing-protein	gnl|CDD|377412	pfam04854, DUF624, Protein of unknown function, DUF624. This family includes several uncharacterized bacterial proteins.	1.29089e-07

Protein sequences

>NC_017218.1|WP_003829607.1|2210164_2210866_-|ABC-transporter-ATP-binding-protein
MAYIEFDKVVKEYPSGGTSIRALDEASFTADQGELTVILGQSGAGKTTALNILGGMDTATSGRVVVGERDITGLRKRDLITYRRNDVGFVFQFYNLVPNLTALENVELASQICPDHFDPAETLRKVGLGERMNNFPGQLSGGEQQRVSIARAIAKKPKLLLCDEPTGALDYETGKEVLQLLQDICRDEGMTVMIITHNSALAPMAHKVIHFRSGTVTSEEINTAPQPIADIEW
>NC_017218.1|WP_106622711.1|2206399_2210155_-|FtsX-like-permease-family-protein
MATARHSHTGFPGGRPVKHLVKQRSQSVKRPVKQSESDDRGSSVSAVFVKDALRCWLRSWKRFVSIAVITLLGVAVLTGIYAGCRDAFLAASRFYDQQGLHDLQVLSTYGLTGDDAAALRRVEGVETVQPERSQTVTATVKGTKKTVTMQEIGTEGLDQPYLQQGDMPSKAGEVAVTQQFLNDSGLEIGDDLTVTPRSASSTVLVGAEDKSNSGSSKSSDGDTDTVGAAEDATTSNNEKEQSPQFPTELTITAVVLDPSDLNNPVGYSGMTAFRSTSSEDYVFFAPSDGVTGNVYTAISIAVAGASQYDTFSDDYDAAIKTVADRIESQIQTQRQKARRQQIVTSAQNTLDAKADALKQLDEGQQQIDSNRAELEANETKLAESRTQLEQNKASITDGERQIAEGRAQIASARQQIAQGRQQIADARAQLESGKAQLTSARQQLDAAQAELTANRSKVEQGIAQIDQGVAQLDQMLQLIQQADDLLSQLDPNIDVDSSTWQTVKQLLASVGITVPDVPSISSLRQQLDAKQNELQSQRSDAIKQKTELQQTLDGTIAPAQNALDQQNAQLTAKEQEAAAGEAELNAKLAELESNTAQLETQSAQLEAQAAQLASGKQQLEEGEKQLKDGEQQLEDGKQQLEDAQQELDEKRSEAESEFAKQQRRIDDVANARWYMQTRSSIDGFSSLKSDVSSIESIGRAFPVVFLLVAVLMSLTTMTRMVEEDRGLIGTYLGLGYGGVVVSLRYLLFALLACLVGGGIGLLIGFLGIPAFLLIVIKGLYILPDVRLEYDWGYGTAGILLFVVGVGVATALACRSEIRHTPAALMRPKAPKAGARILLERIRPVWSRLSFLGKVTARNIFRFKSRLLMTVGGVAGCTALIICGFAINDTVDTIGVKQYGQIYQYDLMVVSNDDDAAVMRKQVKKDGRTTETLNLRVDSAEMSNAAQESETIQLMAVPNNSLNKLNDMVTLEEAGDEGWFGLPNFFGASGGGTVTLDDSGVIVAQSAANSLGVHAGDTVTVSNGGSSRAKIKVAAVVRNLIGSDVYISERLYDQKFAARGIDSSVSDGESSTLTWNAMLAKLKGSDGEQAEYADRLGEESSVVKAVSCAHLEATFKFDLMAAVVALIVGLAGGLALVVLFTLANTNVSERVREMATLKVLGFYDREVHNYVNREMMILTGMGVVVGLPLGRWIGGLLTAALNMPSLYFEVEVHWYSYAIAVAVTLAFALLVQLFTNPVLDRIEPVSSLKSVE
>NC_017218.1|WP_014484406.1|2204622_2206146_-|amino-acid-permease
MADTNANGNAQQSGSKLKSVESLDQTNAMERGLSNRHVQFIAIGGTIGTGLFLGSGKSISLTGPSIVFVYILVGVIMFFLMRAIGEMMYRDPSQHTFINFITRYLGNGWGHFAGWTYWAALVLLGMTEITAVSTYFITFFDTFGIDLTHWKWLIELCFLVSLVSVNLIAVKVFGEVEFWFSMIKITLIGAMIVTAVVMIVIGYQYPAARIHGVDHVSPAGHAGLDNLFAGFSFAPNGWMAFLMSFQMVFFAYELLEFVGVTVSETKNPREVLPKAVNEIIVRVLIFYVGALVAIMCIVPWTSFKPNEDGSFASPFIMVFQYAGLNWASALVFFVVITAASSSLNSLLYSAGRHLYQLAEESPSPMLNKIGQVSDRKVPARAILVSAVLILLSPIVNAIPGVSGAFVLFSSASSAVFLFIYILTLVAHRKYRRSDDFIPDGFVMPVWKVLNTVAIAFFVFIYLTLFLADDTRNSAIAGLVWLIGFGGFSLLRERYRSRDLKAALEHKE
>NC_017218.1|WP_014484405.1|2201124_2202993_-|ABC-transporter-ATP-binding-protein
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGYIAARVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVATAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAIMMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTEPIVKNGTKRAADIAKTEQTGTVEFRNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQVLVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTPAGRKREALQLAADAANDGKLTDEQMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAEEAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHKELLENCEVYRQIAESQLSESELTA
>NC_017218.1|WP_014484404.1|2199163_2200993_-|ABC-transporter-ATP-binding-protein
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNSIDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQTLGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKVSQKYFTRQQVALGDVNGHVEEMYAGHTIVKAYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVAIVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDEQIISACKAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG
>NC_017218.1|WP_003832382.1|2198213_2199155_+|FAD:protein-FMN-transferase
MTGLTEQLPHTAAFPNALGTGLLLHTASALGGDLHQHIEDLISDYENVLSRFKGDSIVGQMRVATHGGTFDFPDWTLNLFDLYDHLFSATNGAIDPCVGEDLIRLGYDKSYSSVNEPNADEHTGAIHGRATWDHAIEHHGTTLVTHGPVALDFGACGKGYLVDLIAERLGVAQSDLRYVIDAGGDLLVHTSEPITIALEDPSDPANAVGVAEISQGAFCASSPSRRHWTDAAGHQLHHLLNAIDGVPVNSVAATWVAATPPSLATAQADGLATALFTTPAAQLRAHFPFECAILTADRSAAQSPDFPGSFFMR
>NC_017218.1|WP_014484403.1|2196690_2198109_-|sodium:solute-symporter
MDNATAVSATNVSGGSLQSTIKDLPIAKVWAFAVGQFGWALLSGIISNWLVYFYQPDQETISQGQTVFVPQGLVVLGLVTVVGGITAFARFFDAFVDPAVASLSDRCDSKAGRRMPFLKFAALPLAVVTVLVFWSPINGTSWVNAAFLFVTVIGYYIALTFYCTPYNALIAELGHDSKQQLTISTAISFTWVAGTAIAYVAPVIWGAFVPMMGRITAIRVTFTIMAAVAFACMLVPPLAIREKDYVNSQPTSESTIESLKQTFFDGEFRKFVCSDVVYWVAITTFQTGLPFFVTSLLKLPETTTTIYFVLMTGVSVLFYLPVNILANRVGKKRLLLIAFVIFTCAFAFAGALGSGVLALMPAMAQGLTLSVVGAIPMAAFGILPQAIVANIADASSKTTGQDRQGMFYAARTFAMKMGQSVAMLLFTGVSTIGMASGAGYRIAAVCAAVLCGLGGIVFAFYNEKKVLHVLGA
>NC_017218.1|WP_106622709.1|2195020_2196061_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLFGLGNTGSMTSADELNEQRDAEQSVAQVSERNDGIDAGEPAASQTRESAVTIPAGTVVLAATPIGNVGDASARLVAFLERADIVAAEDTRRLFDLARRLGVYVNGRVIAYHDHNERDKADGLLDQVETGATVLVVSDAGMPTINDPGLAIVRRAIERGLPVTCAPGPSAVLDALALSGLPTDRFCYEGFLPRKHAERVQYLRTLLGERRTIVFYETPHRIADSMDDLLDAFGPNRPMALCRELTKDYEQIRRGPIGEIRQSVIDDPPRGEMVLVIGGASSEEAEAAAPSTLSVEDMAVLAIDRALEDGLRIKDAIAQVVQEHPLADGSLANRKQVYAAVLEIKG
>NC_017218.1|WP_032734693.1|2194553_2194901_+|hypothetical-protein
MRITGRHASRRLDRLHQAQRLPRASDIQSHSPHASAAVNHDAPPSPPIALTPSVACSPDTPIEVLWHIAQHAPELRRWLIANPRADAALLEFISQAGGPGVKRALAVLLESMEEE
>NC_017218.1|WP_003832377.1|2193891_2194563_+|hypothetical-protein
MRMVGHMNAPNRSMTSTIANAGTARHTTVSPSVPPVLFTKDLPGPLSLSRLETFGTIRKFDESAGYWNEHASTLYGRAMIVSTVAPFGTVACALTAAWVWLGGPDFPRTIDVISTSHFRSTSAGRRIRVFRRVTSPEHIIRLGNLPVTTPQRTACDLVMGMDDAPDPSAINTLVCRLMTAYSFRASECLQIIKEHRHHKHAGRARIFFESLQRESEPALGQCA
>NC_017218.1|WP_003829606.1|2211348_2212821_+|amino-acid-permease
MSTTDAPKKPRETDDVPVPATLRKSLKNRHIQLIALGGAIGTGLFYGSSESIALAGPSILLAYLIGGFAIFMIVRALSEMSVEDPKAGAFSYYATRYWSKRAGFISGWNYWFNYILVSMVELAVVGSFVNYWFPAIPTWVSAAVFLVLITAANLLGVSKFGEFEFWFAIIKIVAVIAMIIGGLAVIIFALPTASGIKASFANWFTVGGGFFPNGLMGHTDNGWTGLLMALVVVMFSFGGTELIGITAGETEDPRTTIPRATNDIIWRILVFYIGALGVIMAVVPWNTIDGKSSPFVQIFDSVGIHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAKQGNAPAYLGKLNSKGVPVAGVLTSAVITAIAVVVVFVWPEFAFNYLMSIATIAGIINWTMIMFTEMKFRKVVEAGGAPEDSNLAGKSGQEALDAIHFKLPFAKVTPWVVLVFLALVVVLMCFSASYRIAVIAGVIWLAILFVAYQITQAKK
>NC_017218.1|WP_003829604.1|2212872_2213478_-|DUF624-domain-containing-protein
MNWLAPDSKFMRAWSNLIDGVWVNILMLVTSIPIITIGAALTAGHDACRRSIEGEGKGVTANYFRSFKANFVKATLLWLPFLVVLIALAWSWIVLQFTPLLIIKFALTIIWLIGFEWVFALQARFENTVAGTLKNAFIFGISHIAMTAALVVVDAVFVALLVGSWFYMPGGLFLLVILGYGTMLMLHIPVTERVFKPYLQQ
>NC_017218.1|WP_014484408.1|2213628_2214471_-|carbohydrate-ABC-transporter-permease
MNENKPVKHGALWTVLFAVVSLFWIFPIVLVLINSFKQKAYISKNAFSLPAGKAFVGFENYVRGVETTQFFASFGWTLLITVGSVILILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVPFQMVMFTLSKIADMLKLNTPWGLCIVYLGFGAGLAVFIFTGVIKGIPAELEESAMIDGASVPRIFFQIVVPIMKPSIVSVSILEAMWIWNDYLLPYLTLDLGKYKTISVAVQYLKGGYGSVDMGAMMACLVLAIIPIIVFYLVCQKYIVSGVMAGAVKG
>NC_017218.1|WP_014484409.1|2214470_2215325_-|sugar-ABC-transporter-permease
MISMAGKAIRRWWALFALPTFAAFIIGFLVPFIMGVYLSFCEFTTVTDGEWIGLKNYTKALKDKEFLHALGFSTAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGIILGYIWLLLLNGVLAHWGRALTYKASYGFWGLVILVCWQQIGYMMIIYIAGLQALPTDVLEAAAVDGANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGAPSNMSEGLALNITRTFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA
>NC_017218.1|WP_014484410.1|2215695_2216712_+|LacI-family-transcriptional-regulator
MTTSIQDVAQKAGVSISTVSRSFTRPDLVSTKTRERVLAIADELNFPLSRSAAALKSGRSLRIAVLMSGHIRLWFTASVIEGLNEVLHAAGYDISVFQISSIEERREFFEMLPVRRNADAVIVVSFDIDNNEITQLASADVPIIGINSVDPEVRGFTAAVNINDVQGSTLAARHLINLGHRDIAYISTDRDVSLNFSVQNRFGAFTECCRNEGIEPQVIVCKVDDAGRYQISDVVTQLMSLPKLPTAIACQEDGIALPLMFQLERNGLSVPGDVSLIGYDDSFYTDDIGLTTIRQNPVGMARKAAHMTLDLIEEKPVDEPYVVAPAHLVVRSSTAKIR
>NC_017218.1|WP_014484411.1|2216919_2218248_-|ABC-transporter-substrate-binding-protein
MMNRTVKSAVAVAAIAAMSLGTLAACGSSTSGDDSKGKVYYLNFKPEAADQWAALAKEYTKEKGVEVKVQTAASGTYEQTLKSEIAKTEAPTLFQVNGPVGYQNWKKYTADMSKTDVYKELTNQDVALRDGDKVVGVPYVMETYGLIYNKDILNKYFALDGAKATSMDEIDNFDTLKAVADDMQSRKDELGIKGAFTSAGFDSSSDWRFKTHLANLPLYYEFKDDNVTEQPAKIKGTYLPNYKKIFDLYITDSTTEPTQLSAKTGDDANSEFALGEAAFYQNGTWAWTDLQKAGMKAESVGMMPIYIGVKGEEKQGLATGSENYWCINDKASDADKKATEDFLSWVITSDAGKKALSQDMGFTTPFKTFDDVKSDNPLTEAAVEDQKSGKTQVSWNFTMMPSEEWKNKIGQALLEYAQGTGNWDAVKATFVDGWASEYEASH
>NC_017218.1|WP_100199007.1|2218668_2219367_-|histidine-phosphatase-family-protein
MDGTVAVDASCGKAGFLVLLRHGQTFWSESGQHTGRTNIPLTEVGRQQAMDAGARLREAFPEGFDPECVFSSPLKRACQTAELAGFAQHGILDGIAEWDYGRAEGRTRQQVSEASGFSWDVWRDGPRSLTPTLEGDWVDTLPDGEQVNVHSGAGETLDEVAARARTAIEEVTPLLQSGRNVLLVAHAHILRILTSQWLNVDPQFARLLRLDTAHYSVLSVYKGDNVIERWNA
>NC_017218.1|WP_014484412.1|2219453_2219831_+|DUF4235-domain-containing-protein
MSDETNTGIASDADRVVEGLHRIDQKVDDLRNQRLNDPDSLGDKLVKSAVPALAGLVAGKLFQIAWDKGAARRNVIKGLAADAPQGLAMSLAFAAISAAFGAIVSQLSNQGSQAFVERRHRKASR
>NC_017218.1|WP_014484413.1|2220862_2223607_+|YhgE/Pip-domain-containing-protein
MRTVWQVFLRDCKRILRNPVAAVVTLGVAVLPSLYAWFNILANWDPYSATGNLQVAVANEDRGTTNDLVGHLNAGKQVVIKLKHNDQLGWRFVSNEEQAVQGVQTGDYYAAIVLPKDFSASLVDSLTGTSKQPKIKYYVNEKKNAIAPKITDTGATTIDEQINSTFVTTVSNTVAAAISQAGDDLDQATNSTQNNVVADLGSVLSTIATVQDALTDLRTTLDQSDTALADARSTTASLQRSITAAQQASQQSGALLAETQDGSQVFAASLVSALDTSSAQLSGLTVNVNNAAGTINQSFNTAQNSVDTITNALNSPLDKTATSLDTLKDALNKAGISADTTDPTGKRIWDHINAVDDAISTQQAKINTFHEDTTRFIDSGKSATTNLSGAMSGTATGGIAALNTARSSLTGTVMPSLTSSLNSFAALNGTLGGTLTSLSGTLDQTNGLFDQLSSTIAQTRTTIGSAQDSLNQIIDDVSTVRTDVATLDSSAVYQKIRDTMHLDDKGFGEFMGSPVTLTTKVVYAIDNYGSAVTPFYTNLALWVGGFVLIAIYKLEVDRESIRRINAKQAYLGRWMLLVTIGFLQAIIATVGDLVLGIQCEHPLLFILAGIFCSFIYINIIYALAVAFRHIGKAIAVILVIVQIPGASGLYPIEMMPDFFRKLHPWLPFTYGINAMRGPIAGTYSNHYWLDMLHLFWYLPAALFVGLVVRRYAMNLNALFDRRLGDTDLMITEHNSMVNEQVSLASVFRTVSDSKELKAIITRRAHRFFARYPMMIVAGLALLTILPFVFLILLFVTQEKIAMLTSWILSIILIDAYLIVVEYTRESYAMQLGVSAMNADEFRDVMLNGYVWRRFRSHGRHEAASAESAVDTDPDIGEVTEQLTPFERTGSTDSSDSSKSSESTITDTNPAQGGA
>NC_017218.1|WP_041473318.1|2223606_2225946_+|YhgE/Pip-domain-containing-protein
MKLIWKIFARDVRQSTRNVIAVIVAMGLVIVPALYAWYNIAASWDPYGNTKALKVAVANVDKGYKSDLMPITINVGETVTNTLRANHDLDWQFVDKDEAIDGVNSDAYYAALIIPKSFSADMMTVFSPTIKHAKIEYYLNEKINPIAPHITDQGASTVATTIDQTFVKTLASVALDLVSNVSNYAQSPQMAQYVNNATSHISTMSSRLTVAASQMDSYANLLGAANGIIDSTDKLLGSTGSAANTAKKALKQTRDGVNSLDSALSGAASGVETALQQAGASYDTVSKQLDTAFASIGSQSDQISGTLTDMQTKVNDQSASFGAYASALRELAGKSSSLPAGGDTIAKQLNAAADQATQTQQDLKNVADDLGRAAQSLVDGTADTDQTLKDIKAQIAAAKQSVTQAANDYQSTLKPQLNNLTASMGDVADQASSVIDGLSSTVNSVSNLSGGISASLRDIQTTLTDAAGNLNHSASKLDDLSAQLSGIANGSSTDLDSITTADPNAIASLLSAPVAVDRIPLYPVANYGSAMAPFYTILSIWVGAIILVAMMKVSVSDHEKAKILGFGNDLPLGSEVGLREAMIAGRVAGPAAALDVLTKPRADSPGNARQFGLHLYQEYFGRYMLFGFLALLQGTLVCLGDMFYLGVQCEHPVQFMMVGWLSALVFSNIVYTLTLSFGDIGKAIAVVLLVMQVAGSGGTFPIETLPSFFQAASKWLLFPYAVDAMHSAMAGSYGMEYWVSMGKLALFLVPSLLLGLLLRRPVIRFNDWIIRNLESTKVM

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017218_7	7.3|2050804|24|NC_017218|PILER-CR	2050804-2050827	24	NC_017218.1	2052120-2052143	0	1.0
NC_017218_7	7.1|2050786|36|NC_017218|CRISPRCasFinder	2050786-2050821	36	NC_017218.1	2052123-2052158	2	0.944

1. spacer 7.3|2050804|24|NC_017218|PILER-CR matches to position: 2052120-2052143, mismatch: 0, identity: 1.0

gagtcaaagccaatgacagatatt	CRISPR spacer
gagtcaaagccaatgacagatatt	Protospacer
************************

2. spacer 7.1|2050786|36|NC_017218|CRISPRCasFinder matches to position: 2052123-2052158, mismatch: 2, identity: 0.944

tcaaagccaatgacagatattgaggaaaccaacccc	CRISPR spacer
tcaaagccaatgacagatatttaggaaatcaacccc	Protospacer
********************* ******.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017218_1	1.4|132718|27|NC_017218|CRISPRCasFinder	132718-132744	27	MK878896	Gordonia phage Begonia, complete genome	45314-45340	6	0.778
NC_017218_1	1.4|132718|27|NC_017218|CRISPRCasFinder	132718-132744	27	MT723942	Gordonia phage Archis, complete genome	42021-42047	6	0.778
NC_017218_2	2.2|561207|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT	561207-561240	34	NC_017767	Thermus thermophilus HB8 plasmid pVV8, complete sequence	58815-58848	6	0.824
NC_017218_2	2.6|561474|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT	561474-561507	34	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	231055-231088	7	0.794
NC_017218_2	2.11|561812|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder	561812-561845	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1174959-1174992	7	0.794
NC_017218_6	6.13|1658213|33|NC_017218|CRISPRCasFinder,CRT	1658213-1658245	33	MN856085	Myoviridae sp. isolate 322, complete genome	5771-5803	7	0.788
NC_017218_6	6.32|1659490|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR	1659490-1659523	34	NC_015383	Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence	375681-375714	7	0.794
NC_017218_2	2.2|561207|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT	561207-561240	34	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	456877-456910	8	0.765
NC_017218_2	2.2|561207|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT	561207-561240	34	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	623506-623539	8	0.765
NC_017218_2	2.2|561207|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT	561207-561240	34	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	105074-105107	8	0.765
NC_017218_5	5.4|1654308|35|NC_017218|PILER-CR,CRISPRCasFinder,CRT	1654308-1654342	35	NZ_CP038637	Cupriavidus oxalaticus strain X32 plasmid unnamed2, complete sequence	109705-109739	8	0.771
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP034568	Vibrio parahaemolyticus strain D3112 plasmid p2, complete sequence	92066-92099	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP033143	Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence	27712-27745	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP010885	Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence	73144-73177	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP013250	Vibrio parahaemolyticus strain FORC_022 plasmid, complete sequence	25345-25378	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP034291	Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence	67777-67810	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP021149	Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence	48573-48606	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP007006	Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence	19195-19228	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP034300	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence	33412-33445	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP034296	Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence	33869-33902	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP019298	Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence	48036-48069	8	0.765
NC_017218_5	5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT	1654784-1654817	34	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	88964-88997	8	0.765
NC_017218_6	6.1|1657401|34|NC_017218|CRISPRCasFinder,CRT	1657401-1657434	34	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	947-980	8	0.765
NC_017218_6	6.1|1657401|34|NC_017218|CRISPRCasFinder,CRT	1657401-1657434	34	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	947-980	8	0.765
NC_017218_6	6.2|1657468|36|NC_017218|CRISPRCasFinder,CRT	1657468-1657503	36	MN908687	Gordonia phage Skog, complete genome	10742-10777	8	0.778
NC_017218_6	6.16|1658416|33|NC_017218|CRISPRCasFinder,CRT	1658416-1658448	33	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	220380-220412	8	0.758
NC_017218_6	6.28|1659220|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR	1659220-1659252	33	NC_048047	Caulobacter phage CcrBL9, complete genome	72731-72763	8	0.758
NC_017218_6	6.29|1659286|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR	1659286-1659320	35	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	585937-585971	8	0.771
NC_017218_6	6.1|1657401|34|NC_017218|CRISPRCasFinder,CRT	1657401-1657434	34	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	181373-181406	9	0.735
NC_017218_6	6.1|1657401|34|NC_017218|CRISPRCasFinder,CRT	1657401-1657434	34	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	241595-241628	9	0.735
NC_017218_6	6.5|1657674|35|NC_017218|CRISPRCasFinder,CRT	1657674-1657708	35	NZ_CP020540	Sphingobium herbicidovorans strain MH plasmid pSHV1, complete sequence	80070-80104	9	0.743
NC_017218_6	6.5|1657674|35|NC_017218|CRISPRCasFinder,CRT	1657674-1657708	35	NZ_CP015988	Sphingobium sp. EP60837 plasmid pEP1, complete sequence	235171-235205	9	0.743
NC_017218_6	6.35|1659694|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR	1659694-1659726	33	NC_006910	Micromonospora rosaria strain SCC2095 plasmid pMR2, complete sequence	9074-9106	9	0.727
NC_017218_2	2.11|561812|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder	561812-561845	34	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	149248-149281	10	0.706
NC_017218_5	5.7|1654513|33|NC_017218|PILER-CR,CRISPRCasFinder,CRT	1654513-1654545	33	NZ_CP006371	Aureimonas sp. AU20 plasmid pAU20d, complete sequence	39703-39735	10	0.697
NC_017218_6	6.16|1658416|33|NC_017218|CRISPRCasFinder,CRT	1658416-1658448	33	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	336171-336203	10	0.697
NC_017218_6	6.28|1659220|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR	1659220-1659252	33	NZ_LR594673	Variovorax sp. PBL-E5 plasmid 3	485154-485186	10	0.697
NC_017218_2	2.10|561745|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder	561745-561778	34	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1684394-1684427	11	0.676
NC_017218_2	2.10|561745|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder	561745-561778	34	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1950643-1950676	11	0.676
NC_017218_6	6.24|1658952|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR	1658952-1658985	34	NC_004808	Streptomyces rochei plasmid pSLA2-L DNA, complete sequence	136589-136622	11	0.676
NC_017218_6	6.32|1659490|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR	1659490-1659523	34	NZ_CP039906	Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623b, complete sequence	39146-39179	11	0.676

1. spacer 1.4|132718|27|NC_017218|CRISPRCasFinder matches to MK878896 (Gordonia phage Begonia, complete genome) position: , mismatch: 6, identity: 0.778

ggttgtggacggtgcggagc----ccccatg	CRISPR spacer
cgttgtggacggtgcggagcggggcgc----	Protospacer
 *******************    * *    

2. spacer 1.4|132718|27|NC_017218|CRISPRCasFinder matches to MT723942 (Gordonia phage Archis, complete genome) position: , mismatch: 6, identity: 0.778

ggttgtggacggtgcggagc----ccccatg	CRISPR spacer
cgttgtggacggtgcggagcggggcgc----	Protospacer
 *******************    * *    

3. spacer 2.2|561207|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT matches to NC_017767 (Thermus thermophilus HB8 plasmid pVV8, complete sequence) position: , mismatch: 6, identity: 0.824

tgcacgaccgggacatgaacgccgccctgaacat	CRISPR spacer
agctggaccgggacctgaacgcggccctgaacct	Protospacer
 **  ********* ******* ********* *

4. spacer 2.6|561474|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

tcgtcaagcagggtcttcaaaatcacac--ccggat	CRISPR spacer
ccgccaagcagggtcatcaaaatcacctcgccgg--	Protospacer
.**.*********** ********** .  ****  

5. spacer 2.11|561812|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.794

gtccacccactggtcgatggcgccgtccgaaccg	CRISPR spacer
gatggcccaccgctcgatggcgccgtccgaacca	Protospacer
* . .*****.* ********************.

6. spacer 6.13|1658213|33|NC_017218|CRISPRCasFinder,CRT matches to MN856085 (Myoviridae sp. isolate 322, complete genome) position: , mismatch: 7, identity: 0.788

ctccggtttgttccatacggtcacgccacgttc	CRISPR spacer
gttcgggttcttccatacggtcacgcccttttc	Protospacer
 *.*** ** ***************** . ***

7. spacer 6.32|1659490|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR matches to NC_015383 (Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence) position: , mismatch: 7, identity: 0.794

tcgcgcaacgcttcggcctcggaacgatccagag	CRISPR spacer
tcgcgcagcgcttcggcctcgtaaaagtcgcgag	Protospacer
*******.************* ** ..**  ***

8. spacer 2.2|561207|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.765

tgcacgaccgggacatgaacgccgccctgaacat	CRISPR spacer
gccgcgcccgggacatgaacgccgcgctcaccgt	Protospacer
  *.** ****************** ** * *.*

9. spacer 2.2|561207|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.765

tgcacgaccgggacatgaacgccgccctgaacat	CRISPR spacer
gccgcgcccgggacatgaacgccgcgctcaccgt	Protospacer
  *.** ****************** ** * *.*

10. spacer 2.2|561207|34|NC_017218|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.765

tgcacgaccgggacatgaacgccgccctgaacat	CRISPR spacer
gccgcgcccgggacatgaacgccgcgctcaccgt	Protospacer
  *.** ****************** ** * *.*

11. spacer 5.4|1654308|35|NC_017218|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038637 (Cupriavidus oxalaticus strain X32 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.771

cgttcgactgcgcggcgatgtgcgccgtgtacaag	CRISPR spacer
catgcgtctgcgcggcgatgtgcgccttgttaatc	Protospacer
*.* ** ******************* ***  *  

12. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP034568 (Vibrio parahaemolyticus strain D3112 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

13. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP033143 (Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

14. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP010885 (Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

15. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP013250 (Vibrio parahaemolyticus strain FORC_022 plasmid, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

16. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP034291 (Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

17. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP021149 (Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

18. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP007006 (Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

19. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP034300 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

20. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP034296 (Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

21. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP019298 (Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
attggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

22. spacer 5.11|1654784|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 8, identity: 0.765

ttttcgggcttttttatttggtttgtggggataa	CRISPR spacer
gttggggcgttttttatttggttttttgggatat	Protospacer
 **  **  *************** * ****** 

23. spacer 6.1|1657401|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.765

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggtgcgaagtgcggcggcgcttttcaaggatgc	Protospacer
 ***  * ..************ ***.*******

24. spacer 6.1|1657401|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.765

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggtgcgaagtgcggcggcgcttttcaaggatgc	Protospacer
 ***  * ..************ ***.*******

25. spacer 6.2|1657468|36|NC_017218|CRISPRCasFinder,CRT matches to MN908687 (Gordonia phage Skog, complete genome) position: , mismatch: 8, identity: 0.778

gtagctttcctcgacgtgcccgccgaaccggccggg	CRISPR spacer
gatgcgctcctcgacgtgctcgccgaaccgacctcg	Protospacer
*  ** .************.**********.**  *

26. spacer 6.16|1658416|33|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

gggaggttgccacgccctgctgttccatctcgt	CRISPR spacer
ccgaggtggccgcgccctgctgttccaccgccg	Protospacer
  ***** ***.***************.* *  

27. spacer 6.28|1659220|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 8, identity: 0.758

tgccagtggtgctcatgcccggcgcggccgcag	CRISPR spacer
aaccgacggtgctcattcccggcggggccgccg	Protospacer
 .**...********* ******* ****** *

28. spacer 6.29|1659286|35|NC_017218|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 8, identity: 0.771

----cgggtcggtgtcacggctgatgcaatccaagtgga	CRISPR spacer
atttcg----ggtgtcatggctgatgcaatcaaaggtga	Protospacer
    **    *******.************* ***  **

29. spacer 6.1|1657401|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 9, identity: 0.735

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggccgcgcgtgcggcgtcgctggtcgaggatgc	Protospacer
 **..*   .******* ***** **********

30. spacer 6.1|1657401|34|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 9, identity: 0.735

aggttggtgatgcggcggcgctgttcgaggatgc	CRISPR spacer
cggccgcgcgtgcggcgtcgctggtcgaggatgc	Protospacer
 **..*   .******* ***** **********

31. spacer 6.5|1657674|35|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP020540 (Sphingobium herbicidovorans strain MH plasmid pSHV1, complete sequence) position: , mismatch: 9, identity: 0.743

cggctca---tctccgacgaggtggcgcaggccaatga	CRISPR spacer
---cccaagctctccgaagcggtggcgcaggccaagct	Protospacer
   *.**   ******* * ***************   

32. spacer 6.5|1657674|35|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP015988 (Sphingobium sp. EP60837 plasmid pEP1, complete sequence) position: , mismatch: 9, identity: 0.743

cggctca---tctccgacgaggtggcgcaggccaatga	CRISPR spacer
---cccaagctctccgaagcggtggcgcaggccaagct	Protospacer
   *.**   ******* * ***************   

33. spacer 6.35|1659694|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR matches to NC_006910 (Micromonospora rosaria strain SCC2095 plasmid pMR2, complete sequence) position: , mismatch: 9, identity: 0.727

tagcgtcaacgagcatgtccgccatgctcaacg	CRISPR spacer
cggcgtcatcgagcatgtcggccatgcgggtcc	Protospacer
..****** ********** *******  . * 

34. spacer 2.11|561812|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 10, identity: 0.706

gtccacccactggtcgatggcgccgtccgaaccg	CRISPR spacer
ccggtgccactcgtcgatggcgccgcccgaaacc	Protospacer
 .    ***** *************.***** * 

35. spacer 5.7|1654513|33|NC_017218|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006371 (Aureimonas sp. AU20 plasmid pAU20d, complete sequence) position: , mismatch: 10, identity: 0.697

tgatcgccgtgatcacggaggtcaccacggtta	CRISPR spacer
agatcgccgtggtcgcggaggtcacggaattct	Protospacer
 **********.**.********** . . *. 

36. spacer 6.16|1658416|33|NC_017218|CRISPRCasFinder,CRT matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

gggaggttgccacgccctgctgttccatctcgt	CRISPR spacer
gctgacgtgccacgccctgctgctccaactcca	Protospacer
*  ..  ***************.**** ***  

37. spacer 6.28|1659220|33|NC_017218|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 10, identity: 0.697

tgccagtggtgctcatgcccggcgcggccgcag	CRISPR spacer
cctacgtggtgcgcaagcccggcgcggccgtca	Protospacer
. .  ******* ** **************. .

38. spacer 2.10|561745|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 11, identity: 0.676

agtgctttcctgtccttgtcagcaggcatcggac	CRISPR spacer
gagcttcgtctgtccttgtgagcaggcaccggaa	Protospacer
..  .*. .********** ********.**** 

39. spacer 2.10|561745|34|NC_017218|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 11, identity: 0.676

agtgctttcctgtccttgtcagcaggcatcggac	CRISPR spacer
gagcttcgtctgtccttgtgagcaggcaccggaa	Protospacer
..  .*. .********** ********.**** 

40. spacer 6.24|1658952|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR matches to NC_004808 (Streptomyces rochei plasmid pSLA2-L DNA, complete sequence) position: , mismatch: 11, identity: 0.676

cgaaggcacgcgcccaacccgccgcgtcctggct	CRISPR spacer
tcccggcacgcgccgaacgcgccgcgtcccacgg	Protospacer
.   ********** *** **********..   

41. spacer 6.32|1659490|34|NC_017218|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039906 (Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623b, complete sequence) position: , mismatch: 11, identity: 0.676

tcgcgcaacgcttcggcctcggaacgatccagag	CRISPR spacer
ttttctcgggcttcggcctcggcacgatcctgat	Protospacer
*. . . . ************* ******* **