CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015566	Serratia sp. AS12, complete sequence	3 crisprs	DEDDh,WYL,DinG,csa3,cas3,Cas9_archaeal	2	14	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015566_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015566_1

501098-501486

Orphan

I-F

Consensus_repeat	Method
GTGCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTNCACTGCCGTANAGGCAGCTTAGAAA	CRT
CACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

6 spacers

The CRISPR arrays of NC_015566_1

>merge|NC_015566|1|501098-501486|PILER-CR,CRT,CRISPRCasFinder
GTGCACTGCCGTATAGGCAGCTTAGAAAAGGTGCATTTTGTTGCTGCCATCTGAGTTCTGGTGCACTGCCGTATAGGCAGCTTAGAAAGTCCACGATCTTTTTGTCGTCCGTGTTTACTGGTGCACTGCCGTATAGGCGGCTTAGAAAGATGCGCTGGCTGTGGAGAATGCGGTGCTGAAGTGCACTGCCGTACAGGCAGCTTAGAAAGTACAGTTATTGACAGAACTCCGAGAGGGCGCGTTCACTGCCGTACAGGCAGCTTAGAAACGGCAGCGTTGCAACCAGTACGCGCCCAGTGAAGTTCACTGCCGTACAGGCAGCTTAGAAAGCTGGGCATGGCTGCAGAAATGGAGTCGATGTGTTCACTACCGTAAAGGCCGTTTCAAAA

>NC_015566|1|1|501098-501426|PILER-CR
GTGCACTGCCGTATAGGCAGCTTAGAAA	AGGTGCATTTTGTTGCTGCCATCTGAGTTCTG
GTGCACTGCCGTATAGGCAGCTTAGAAA	GTCCACGATCTTTTTGTCGTCCGTGTTTACTG
GTGCACTGCCGTATAGGCGGCTTAGAAA	GATGCGCTGGCTGTGGAGAATGCGGTGCTGAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTACAGTTATTGACAGAACTCCGAGAGGGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGGCAGCGTTGCAACCAGTACGCGCCCAGTGAA
GTTCACTGCCGTACAGGCAGCTTAGAAA

>NC_015566|1|1|501098-501486|CRT
GTGCACTGCCGTATAGGCAGCTTAGAAA	AGGTGCATTTTGTTGCTGCCATCTGAGTTCTG
GTGCACTGCCGTATAGGCAGCTTAGAAA	GTCCACGATCTTTTTGTCGTCCGTGTTTACTG
GTGCACTGCCGTATAGGCGGCTTAGAAA	GATGCGCTGGCTGTGGAGAATGCGGTGCTGAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTACAGTTATTGACAGAACTCCGAGAGGGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CGGCAGCGTTGCAACCAGTACGCGCCCAGTGAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTGGGCATGGCTGCAGAAATGGAGTCGATGT
GTTCACTACCGTAAAGGCCGTTTCAAAA

>NC_015566|1|1|501101-501486|CRISPRCasFinder
CACTGCCGTATAGGCAGCTTAGAAA	AGGTGCATTTTGTTGCTGCCATCTGAGTTCTGGTG
CACTGCCGTATAGGCAGCTTAGAAA	GTCCACGATCTTTTTGTCGTCCGTGTTTACTGGTG
CACTGCCGTATAGGCGGCTTAGAAA	GATGCGCTGGCTGTGGAGAATGCGGTGCTGAAGTG
CACTGCCGTACAGGCAGCTTAGAAA	GTACAGTTATTGACAGAACTCCGAGAGGGCGCGTT
CACTGCCGTACAGGCAGCTTAGAAA	CGGCAGCGTTGCAACCAGTACGCGCCCAGTGAAGTT
CACTGCCGTACAGGCAGCTTAGAAA	GCTGGGCATGGCTGCAGAAATGGAGTCGATGTGTT
CACTACCGTAAAGGCCGTTTCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015566.1\|WP_013811297.1\|503316_504099_-\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
NC_015566.1\|WP_013811299.1\|504711_505281_-\|ribose-1,5-bisphosphokinase	unknown	unknown	gnl\|CDD\|236648
NC_015566.1\|WP_013811294.1\|501910_502072_+\|hypothetical-protein	unknown	unknown	unknown
NC_015566.1\|WP_013811292.1\|500117_500621_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NC_015566.1\|WP_004952907.1\|499602_500124_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NC_015566.1\|WP_013811293.1\|500607_500910_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NC_015566.1\|WP_013811295.1\|502244_502679_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NC_015566.1\|WP_013811300.1\|505280_506417_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|237967
NC_015566.1\|WP_013811288.1\|495175_496432_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NC_015566.1\|WP_004952936.1\|507140_507929_-\|phosphonate-C-P-lyase-system-protein-PhnK	unknown	unknown	gnl\|CDD\|183280
NC_015566.1\|WP_013811287.1\|494509_495145_-\|CerR-family-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236928
NC_015566.1\|WP_013811286.1\|493354_494494_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_015566.1\|WP_143760023.1\|496801_497170_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236120
NC_015566.1\|WP_013811298.1\|504112_504715_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|132351
NC_015566.1\|WP_013811285.1\|492203_493358_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_015566.1\|WP_013811296.1\|502727_503366_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NC_015566.1\|WP_013811291.1\|498379_499375_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_015566.1\|WP_004952938.1\|507928_508789_-\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	unknown	unknown	gnl\|CDD\|226154
NC_015566.1\|WP_013811301.1\|506416_507121_-\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118
NC_015566.1\|WP_013811290.1\|497489_498368_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968

Protein	Function_ID	Function_description	E-value
NC_015566.1\|WP_013811297.1\|503316_504099_-\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	1.15064e-156
NC_015566.1\|WP_013811299.1\|504711_505281_-\|ribose-1,5-bisphosphokinase	gnl\|CDD\|236648	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.	3.14736e-103
NC_015566.1\|WP_013811292.1\|500117_500621_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	4.04064e-57
NC_015566.1\|WP_004952907.1\|499602_500124_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.45928e-69
NC_015566.1\|WP_013811293.1\|500607_500910_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	2.64386e-40
NC_015566.1\|WP_013811291.1\|498379_499375_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	5.33036e-114
NC_015566.1\|WP_013811300.1\|505280_506417_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
NC_015566.1\|WP_013811288.1\|495175_496432_-\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	2.26645e-29
NC_015566.1\|WP_004952936.1\|507140_507929_-\|phosphonate-C-P-lyase-system-protein-PhnK	gnl\|CDD\|183280	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional.	0
NC_015566.1\|WP_013811287.1\|494509_495145_-\|CerR-family-C-terminal-domain-containing-protein	gnl\|CDD\|236928	PRK11552, PRK11552, putative DNA-binding transcriptional regulator; Provisional.	1.11611e-35
NC_015566.1\|WP_013811286.1\|493354_494494_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	9.63581e-24
NC_015566.1\|WP_143760023.1\|496801_497170_+\|hypothetical-protein	gnl\|CDD\|236120	PRK07867, PRK07867, acyl-CoA synthetase; Validated.	0.00308353
NC_015566.1\|WP_013811298.1\|504112_504715_-\|acetyltransferase	gnl\|CDD\|132351	TIGR03308, phn_thr-fam, phosphonate metabolism protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.	7.063e-85
NC_015566.1\|WP_013811285.1\|492203_493358_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.02106e-19
NC_015566.1\|WP_013811296.1\|502727_503366_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.38645e-69
NC_015566.1\|WP_013811295.1\|502244_502679_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	4.95265e-95
NC_015566.1\|WP_004952938.1\|507928_508789_-\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	gnl\|CDD\|226154	COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
NC_015566.1\|WP_013811301.1\|506416_507121_-\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.69769e-144
NC_015566.1\|WP_013811290.1\|497489_498368_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0

>NC_015566.1|WP_013811293.1|500607_500910_-|GIY-YIG-nuclease-family-protein
MDIPTWHLYMLRLPNGMLYTGITTDVARRLAQHQAGKGAKALRGKGELTLAFHCRVGDRSTALRLEYRVKQLSKIQKERLVSHPPPSLDYLLPGAEVKAG
>NC_015566.1|WP_013811292.1|500117_500621_+|N-acetyltransferase
MLIRVEIPVDAAGIDALLRRAFGRDDEADLVQQLREDGLLTLGIVATDDEGGVVGYAAFSPVDVAGEDRQWVGLAPLAVDESLRRQGLGEKLIYEGLDSLNEFSYAAVVVLGDPAYYGRFGFKPAAAYGLHCRWPGAEAAFQVYPLAEDALTDVSGAVEYSEPFNRL
>NC_015566.1|WP_004952907.1|499602_500124_+|SCP2-domain-containing-protein
MLEQLRARIVRQGPSLLRVPLKFTPFALQRQLLEQVLGWQFRQALADGDLAFLESRWLKIEVRDLALHWFMTVENDKLVVSHHAEADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELEAMPAPLRIGLLQLAEFVEAGLQEGTVQTSRVPVAC
>NC_015566.1|WP_013811291.1|498379_499375_-|U32-family-peptidase
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVEYVHRHRRKLHIAINTFAHPDGYGRWQRAVDMAAQLGADVLILADLAMLEYAAERYPQLERHVSVQASATNEEAIRFYQRHFDVSRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTAQGMESRLNDVLIDRYRDDENASYPTLCKGRYRVDDVRYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVARIWRQAIDRCQADPATYRADAGWMEALGAMSEGTQTTLGAYHRKWQ
>NC_015566.1|WP_013811290.1|497489_498368_-|U32-family-peptidase
MKYALGSVLYYWPKTEIEEFYRQAVNSSAEIVYLGESVCTKRREMKVGDWLTLAQEIARSGKQVVISTLALLQAPSELNELKRYVENGEFLIEANDLGTVNMAAERGLPFVAGHALNCYNAYTLRLLHRQGMVRWCMPVELSRDWLANLLTQCDELGFRHQFEVEVLSYGHLPLAYSARCFTARSENRGKDECETCCIHYPQGRMMRSQEEQQVFVLNGIQTMSGYCYNLGNELQSMQGLVDIVRLSPQSAETLTLIDSFRANEQGAQPLVLADKADCNGYWRRVAGLELVQ
>NC_015566.1|WP_143760023.1|496801_497170_+|hypothetical-protein
MLIEHIKSFIKGKNIMSTIRELTLDEMKLIGGCGDGNNGGDRDRTDRGAPNTCANQVGFGAIIGAFTGMPGGPPGMIGMAFAGALTGVVGCDRNSQSKNNSDNKGALGGNRNANSVNGQCRW
>NC_015566.1|WP_013811288.1|495175_496432_-|aminopeptidase-P-family-protein
MLIPPKSLSHTERDRRWQLARDIIHTEGLAALIVYGDREAAAPAGFAPDCYFTNDRPGSIVVFIGNEPPRVYTFASLMVADHLQASLRGDLQWIDAEQLFVGKNGPDVGAWLASRRLEGTRIGIIGLEPYPPFYFDGAMPARTFQGLADALPTATWVPVYREFFRRASVKSEEELALVRYAAHIGETMCEALRATARPGVSEADLVAAVTATCFSMGGYTAELLLGSGPEYVGWGPPAWQYRAQAPRVLQEGDLVLSEIFALYGMMETQHQAAVAIGEVHPEILRAAEVARASYEAGLQTLRAGNTFGDVVDAMEQPLLASGGWHVHPLVHSINPYGPVGFGTAPGIESLPEAARYAQLKRLPTVGRDLPLQAGMCFAFEPNCAFGRHMANIGGTVLVGDSGGVALNENSTRLMQSDG
>NC_015566.1|WP_013811287.1|494509_495145_-|CerR-family-C-terminal-domain-containing-protein
MQDQDRLSERARETQERLIRAGLSLFSKQGLEGVRTRQLADEAGVNQSAIPYHFGGKEGVYLAVLEHVANGIVEHLALPRLLTDSQSPAAALQALMQDFVRALLGSETSTASSLLLAREQLQPSAEFDALYSRLFLPLHQTVSELVAAIRGQDPALRENILCAHAIIGQALAFSVAREALLRRLGENALQPQQVAQIAGLVGVMSVAAAQH
>NC_015566.1|WP_013811286.1|493354_494494_+|ABC-transporter-permease
MKIYWQTFVRVLLGMLERPMWLMLILSLCIMSMVYANRTVWDLPVGVVDQDHSTASRQLIRQLDATSKIAIQTYDSQEQAQRDLGWRKLFAVIIMPVDLEKKILSGQNIVVPVYGDATNRLANGQIQQDVVAAYQQLLGEYNTGLLLRSGFSERQAQVILTPIVGQTLDVFNPGISFAAIIFPGLLVMLLQHSLLIACIRVSIAMKSTPGGKAPLAAHLGGLTALLPIWLFLSIVLFVLWPWVLGYRQTAGIPEILLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQAMPGWVRTISYCIPSTWATKAIAGVNQMGLSLNEVWGDVVMLLVLGIIYTLLGVGVGFLRNSVALRSLFRKRSA
>NC_015566.1|WP_013811285.1|492203_493358_+|ABC-transporter-permease
MAMERVRAGWRCFSHAFDNECRIAFRSPVVHWLSWIFPLMLFGLISSNFSEGTLLDLPVSVVDSDHSSLSKSLIRRLDAGSHAHVEAYDGGLDESLHRLRSAQDYALLYIPPDFEANALAGKQPSVVMYYNALFYGAGLYSTQDFSGLMTEINASTRSIIAGEMGKTLPPLADVTLSYGSLFNASGSYIYYQQFAATIHLLQLFVVTCMIYVLARSKSLLKARPFSLALLGKLAPYTLCFTSLLMVEIAALVGIFDARVSGNPLFMLMIAFFYVMAAQSVGLLLFTFTGSIITAYSLIGILVSIALTFSGMAVPELSMPLPARIISNIEPLTHALYAMFDVFLRQVPASAIFSVCALLAVYPLVTALLVRNRLLQRLLKEGGAG
>NC_015566.1|WP_013811294.1|501910_502072_+|hypothetical-protein
MKYFLMGALLLAANGSAFAVELSKFDRVEHKENIICWPNGECIDIDDPGVFPY
>NC_015566.1|WP_013811295.1|502244_502679_+|YhbP-family-protein
MNNLDQQQLITHFIGKQHVLTLCAGNGVDMWCANCFYVFDAEQMALWLMTETHTRHGELMLQNASVVGTIAPKPKTIALIRGVQYRAEAVMLSGDEEALARARYCKRFPIAKVMKAPVWQLNLQEVKMTDNTLGFGKKLHWTRA
>NC_015566.1|WP_013811296.1|502727_503366_+|NAD(P)H-binding-protein
MARVLIVGSTGLVGSELLQQLQDDPQVTAIVAPTRQPLPANEKTDNPVGEDLFALLSGLQQPVDIIFCCLGTTRKAAGSDANFRYVDYQLVVESALTGRRLGAQHCLVVSAVGANPRSSFLYNRTKGEMEQALREQNWPRLTLVRPSMLLGNRPSPRLMERLTAPLFKLLPGKWRSVAAKDVAQTLLEQAFSPGSGVTVLESDQLHRYGNVH
>NC_015566.1|WP_013811297.1|503316_504099_-|phosphonate-metabolism-protein-PhnP
MQLTFLGTGGAQQIPVFGCDCLVCQRARREPAFRRRPCSAMLKFQGETTLLDAGLPSLERRFSAGEIQRFLLTHYHMDHVQGLFPLRWGCGNFIPVYGPADEQGCDDLFKHPGILAFQPPLTPFERVELGGLHITPLPLQHSKPTLGYLVQAEGYALAYLTDTVGLPPDTEAFLSKITLDLLVLDCSLPPQPQAPRNHNDLTRAQETQQRLQPGRTLLTHISHHLDLWLMDNELPPGMELAFDNLSVRCHNDAVGRTPAP
>NC_015566.1|WP_013811298.1|504112_504715_-|acetyltransferase
MNDFAQPRIGDNVILNRTRLGQYVHVADDAILEEVEMGDYSYTAGHNQIFYATLGKFVSIASYARINPGNHPTYQRIAQHHFTYRASEYGLGEDDEAFFDWRREHHITVGHDVWIGHNAILMPGVSVGNGAVIGSAAVVTKNVEPYAIVAGVAAKKIGVRFDDALIERIERSQWWHWDHQTLQERLADFRDINAFAEKYL
>NC_015566.1|WP_013811299.1|504711_505281_-|ribose-1,5-bisphosphokinase
MAQLIYLMGPSGSGKDSLLAQLRADADSAPLVAHRYITRPADAGCENHIALSEPEFLRRRAKGLFALDWQAHQQHYAFGIEVDLWLLQGIDVVVNGSRAHLPQAQQRYGAQLLPVCLQVSTEVLRQRLQNRGREDAAQIEQRLARAAEYQQKLPTGCRLLANDGDLQDTLTALLALLPASSKHPQDATQ
>NC_015566.1|WP_013811300.1|505280_506417_-|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MIINNVKLVLADQIVEGSLEINDGVIRSFADTPSQLPQALNGEGGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSHDALMVANGITTVLDAVAIGDVRDGGHRLENLQKMIDAVIHSQRAGVNRAEHRLHLRCELPNESTLSLFEQLMDKPGVSLVSLMDHSPGQRQFASREKYREYYQGKYHLNDQQMSEYEEQQIGLSARWATPNREAIAAHCRARKISLASHDDATAEHVAESCALGSAIAEFPTTEDAARASHRQGLQVLMGAPNIVRGGSHSGNVAAHHLAALGVLDILSSDYYPASLLDAAFRIAADERNGYGLPQAVQMITSNPAKALDLHDRGSIAEGLRADLVLARPHGEHIYVQNVWRQGKQVF
>NC_015566.1|WP_013811301.1|506416_507121_-|phosphonate-C-P-lyase-system-protein-PhnL
MTIQIRVEHLSKTFVLHQQHGTRLPVLHDANMTVSSGECVVLHGHSGSGKSTLLRSLYANYLPDSGHIWVNHQGEWLDMVQAEARQILAVRRHTLGWVSQFLRVIPRISALDVVMQPLLEQGVDRAECRERAETLLNQLNVPQRLWQLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDSRNSAAVVGLIEQAKQRGAAVVGIFHDEGVRQQVADRLYDMQAPQALEIF
>NC_015566.1|WP_004952936.1|507140_507929_-|phosphonate-C-P-lyase-system-protein-PhnK
MISQPLSTTPLLSVANLTHLYAPGKGFSDVSFDIYPGEVLGIVGESGSGKTTLLKSISARLAPQHGQILYRPQAGQQHDLYAMAESDRRRLLRTDWGVVHQHPLDGLRPKVSAGGNIGERLMAIGQRHYGDIRRQAAQWLEDVEIPVSRLDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRNLVVEMQLAAVIVTHDLGVARLLAHRLLVMKEGQVVESGLTDRVLDDPHHPYTQLLVSSVLS
>NC_015566.1|WP_004952938.1|507928_508789_-|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ
MSEVLTGYNLGYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVIGRADVLKVIDQGADDTTNAVSIRRFFQRVAGVATTERTPEATLIQTRHRIPETALHEDQILIYQVPIPEPLRFIEPRETETRKMHALEEYGVMQVKLYEDIARYGHIATTYAYPVKVNDRYVMDPSPIPKFDNPKMHMMPALQLFGAGREKRIYALPPFTKVESLDFDDHPFSVQKWDEPCALCGSRHSYLDEVVLDDQGNRMFVCSDTDYCRQQLAQPSQEAQH

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Crispr_ID: NC_015566_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015566_2

1369524-1369897

Orphan

Consensus_repeat	Method
GCTGCCGACGCCGAGAAGAAAGC	CRISPRCasFinder

7 spacers

The CRISPR arrays of NC_015566_2

>merge|NC_015566|2|1369524-1369897|CRISPRCasFinder
GCGGCCGCCGCCAAGGCCAAGGCCGAAGCGGATAAAGTTGCCAAGGCACAAGCGGACGCGCAGAAGAAAGCGGAAACTGAAGCCAAGAAAGAAGCCGCCGCCGCCGCTGCCGCCAAGAAACAGGCGGAAGAAGCGAAGAAAGCGGCTGCCGCTGAGCAAAAAGCGACTGAAGCCGCAGAGAAAAAAGCGGCTGCCGACGCCGAGAAGAAAGCCGCAGCGGAAGCTGAGAAGAAAGCTGCAGCAGAAGCCGAGAAAGCCGAGAAAAAGGCAGCTGCTGACGCCGAGAAGAAAGCGGCCGCAGAGGCTGAGAAAAAAGCGGCTGCTGCCGAGAAGGCCGCAGCCAAGAAAGCCGCAGCGGATGCCAAGAAGAAAGC

>NC_015566|2|2|1369524-1369897|CRISPRCasFinder
GCGGCCGCCGCCAAGGCCAAGGC	CGAAGCGGATAAAGTTGCCAAGGCA
CAAGCGGACGCGCAGAAGAAAGC	GGAAACTGAAGCCAAGAAAGAAGCCGCC
GCCGCCGCTGCCGCCAAGAAACA	GGCGGAAGAAGCGAAGAAA
GCGGCTGCCGCTGAGCAAAAAGC	GACTGAAGCCGCAGAGAAAAAAGCG
GCTGCCGACGCCGAGAAGAAAGC	CGCAGCGGAAGCTGAGAAGAAAGCTGCAGCAGAA
GCCGAGAAAGCCGAGAAAAAGGC	AGCTGCTGACGCCGAGAAGAAAGCG
GCCGCAGAGGCTGAGAAAAAAGC	GGCTGCTGCCGAGAAGGCCGCAGCCAAGAAAGCC
GCAGCGGATGCCAAGAAGAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015566.1\|WP_004949773.1\|1370466_1371759_+\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235143
NC_015566.1\|WP_013811937.1\|1380740_1381346_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_015566.1\|WP_013811924.1\|1361526_1363425_-\|5'-nucleotidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236505
NC_015566.1\|WP_013811925.1\|1364108_1365677_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|185052
NC_015566.1\|WP_004949761.1\|1366848_1366962_+\|cytochrome-bd-I-oxidase-subunit-CydX	unknown	unknown	gnl\|CDD\|227227
NC_015566.1\|WP_004949757.1\|1360588_1361461_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NC_015566.1\|WP_013811935.1\|1376566_1377529_-\|CDF-family-zinc-transporter-ZitB	unknown	unknown	gnl\|CDD\|235130
NC_015566.1\|WP_013811927.1\|1366961_1367258_+\|cyd-operon-protein-YbgE	unknown	unknown	gnl\|CDD\|236721
NC_015566.1\|WP_013811932.1\|1372328_1373126_+\|cell-division-protein-CpoB	unknown	unknown	gnl\|CDD\|182745
NC_015566.1\|WP_013811938.1\|1382685_1383438_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NC_015566.1\|WP_013811936.1\|1377528_1380744_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NC_015566.1\|WP_013811934.1\|1375803_1376529_+\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|185295
NC_015566.1\|WP_013811929.1\|1368485_1368914_+\|colicin-uptake-protein-TolR	unknown	unknown	gnl\|CDD\|236824
NC_015566.1\|WP_004949756.1\|1359422_1360589_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NC_015566.1\|WP_013811933.1\|1374715_1375777_+\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NC_015566.1\|WP_006324117.1\|1367789_1368473_+\|Tol-Pal-system-protein-TolQ	unknown	unknown	gnl\|CDD\|182743
NC_015566.1\|WP_013811926.1\|1365691_1366831_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|184965
NC_015566.1\|WP_013811928.1\|1367388_1367793_+\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|182742
NC_015566.1\|WP_013811931.1\|1371803_1372319_+\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|182744
NC_015566.1\|WP_004941813.1\|1381552_1382605_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	unknown	unknown	gnl\|CDD\|236435

Protein	Function_ID	Function_description	E-value
NC_015566.1\|WP_004949773.1\|1370466_1371759_+\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235143	PRK03629, tolB, Tol-Pal system protein TolB.	0
NC_015566.1\|WP_013811937.1\|1380740_1381346_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.40299e-54
NC_015566.1\|WP_013811924.1\|1361526_1363425_-\|5'-nucleotidase-C-terminal-domain-containing-protein	gnl\|CDD\|236505	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase.	6.70924e-97
NC_015566.1\|WP_013811925.1\|1364108_1365677_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
NC_015566.1\|WP_004949761.1\|1366848_1366962_+\|cytochrome-bd-I-oxidase-subunit-CydX	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	3.32792e-11
NC_015566.1\|WP_004949757.1\|1360588_1361461_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NC_015566.1\|WP_013811935.1\|1376566_1377529_-\|CDF-family-zinc-transporter-ZitB	gnl\|CDD\|235130	PRK03557, PRK03557, CDF family zinc transporter ZitB.	0
NC_015566.1\|WP_013811927.1\|1366961_1367258_+\|cyd-operon-protein-YbgE	gnl\|CDD\|236721	PRK10588, PRK10588, hypothetical protein; Provisional.	3.87623e-51
NC_015566.1\|WP_013811932.1\|1372328_1373126_+\|cell-division-protein-CpoB	gnl\|CDD\|182745	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.	6.00273e-152
NC_015566.1\|WP_013811938.1\|1382685_1383438_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	0
NC_015566.1\|WP_013811936.1\|1377528_1380744_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.57278e-69
NC_015566.1\|WP_013811934.1\|1375803_1376529_+\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|185295	PRK15397, PRK15397, nicotinamide riboside transporter PnuC; Provisional.	4.81468e-164
NC_015566.1\|WP_013811929.1\|1368485_1368914_+\|colicin-uptake-protein-TolR	gnl\|CDD\|236824	PRK11024, PRK11024, colicin uptake protein TolR; Provisional.	7.96361e-94
NC_015566.1\|WP_004949756.1\|1359422_1360589_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NC_015566.1\|WP_013811933.1\|1374715_1375777_+\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NC_015566.1\|WP_006324117.1\|1367789_1368473_+\|Tol-Pal-system-protein-TolQ	gnl\|CDD\|182743	PRK10801, PRK10801, Tol-Pal system protein TolQ.	1.21567e-167
NC_015566.1\|WP_013811926.1\|1365691_1366831_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
NC_015566.1\|WP_013811928.1\|1367388_1367793_+\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|182742	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional.	8.66285e-94
NC_015566.1\|WP_013811931.1\|1371803_1372319_+\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|182744	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal.	1.5505e-118
NC_015566.1\|WP_004941813.1\|1381552_1382605_+\|3-deoxy-7-phosphoheptulonate-synthase-AroG	gnl\|CDD\|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0

>NC_015566.1|WP_013811929.1|1368485_1368914_+|colicin-uptake-protein-TolR
MARVRGRNRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVEVSLPDATDSKAVSSDDNPPVILEVSGVGQYTLVVDHNRMELLPPEQVAAEAKSRLAANPKTVFLIGGAKEVPYDEIIKALNILHQAGVASVGLMTQPI
>NC_015566.1|WP_006324117.1|1367789_1368473_+|Tol-Pal-system-protein-TolQ
MNEMNILDLFLKASLLVKLIMLILICFSVASWAIIIQRTRILNAATRDAEAFEDKFWSGIELSRLYQESQARRDSLTGSEQIFHSGFKEFARLHRANNHAPESVIEGASRAMRISMNRELETLENHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLEQNYDNFMEEFTAILHRQAFSSDSK
>NC_015566.1|WP_013811928.1|1367388_1367793_+|tol-pal-system-associated-acyl-CoA-thioesterase
MSNTLFRWPVRVYYEDTDASGVVYHARYVAFFERARTEMLRHHNFHQQQLLSEHIAFVVRRMTVDYLVPARLDEQLEVQSEITSMRGASLTFAQRIVNSDGTLLSQADVLIACIDPHQMKPIALPKSIVAEFKQ
>NC_015566.1|WP_013811927.1|1366961_1367258_+|cyd-operon-protein-YbgE
MSSSLTDKLYAVTDKGPVRALSLALALILAGCIFWDPTRFAAKTSSLEIWEGLLLIWAVCTGMIHGVGFRPQRSLWRAFFAPLPAIVILAAGLLYVSL
>NC_015566.1|WP_004949761.1|1366848_1366962_+|cytochrome-bd-I-oxidase-subunit-CydX
MWYFAWILGTLLACAFGIITALALEHHEDSKAQQDGK
>NC_015566.1|WP_013811926.1|1365691_1366831_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MFDYEVLRFIWWALIGVLLIGFAVTDGFDMGVGILLRIIGKTDTERRVMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLSALFFRPVGFDYRSKLENSRWRNMWDWGIFIGSFVPAVVFGVAFGNLLQGVPFHMDEYMRLFYTGNFFQLLNPFGLLAGVVSLTMLVTQGATYLQMRTSGEIHLRARAAAQISTLVMAVFFLLGGVWLVKGIDGYVITSALNTMAESNPMRKEVAHQAGAWLINFNKYPALWALPALGVVLPLFTALFSRLQKDALAFVSSSLTIACVILTAGVTMFPFVMPSSTVPNVSLTMWDATSSLFTLEVMTVVAAIFVPIVLAYTSWSYYKMFGRLDKNFIENNKHSLY
>NC_015566.1|WP_013811925.1|1364108_1365677_+|cytochrome-ubiquinol-oxidase-subunit-I
MFDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFAINFALGVATGLTMEFQFGTNWSYFSHYVGDIFGAPLAIEGLMAFFLESTLVGLFFFGWDRLSKVQHMAVTWFVALGSNFSALWILVANGWMQNPIASDFNFETMRMEMLSFSELVLNPVAQVKFVHTVAAGYTCGAMFVLGISSYYLLKGRDVAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPNQDKMENSYAIQIPYALGLIATRSTDTQVTGLKDLMAQHEVRIRNGMKAYQLLEELRGGNTDPAVRAEFNKAKQDLGYGLLLKRYTPNVTDATEAQIQQATKDSIPRVAPLYFAFRIMVACGVLMLFIIGLSFWSVIRGRIGQRKWLHRAALYGLPLPWIAIEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDILFSMGLICGLYTLFLVAEMYLMFKFARLGPSSLKTGRYHFEQPTAAVQEAR
>NC_015566.1|WP_013811924.1|1361526_1363425_-|5'-nucleotidase-C-terminal-domain-containing-protein
MKKILFASVLGLSGSAIAAETVNITLLGTSDLHGTFVPWDYASDTENLAGSLSQIATQIKKLRAEQPNLILVDAGDTIQGNFVETFKHEAISPMMLGFNALKYDVWVMGNHEFDFGLPVLATPLKQFEGTALAGNIFWDNGKPFLPAYKIIERQGVKIGIIGMDTPMTAEFAKGTDRTKGLNFTDPVQAVKNVISEIDGQVDAIVLVAHMGIDNENQRPGTGVADIANANPQLAAIVAGHMHVKIDKAVVNGVIITEPDKYGRALSRIDLQFERRDGKFALINKDSFTYLIKGITPDSGMLALYQPYHDILRTNANRVVATLTGSDLVPIDEIKGIPQVHIQDTGISALFQQAARYYAPQAQVIALQIDNDSAKLDVGEIKAKDIAFNYQYAGGEITVYQLNGKALKQYMEWSAGYFNQLKPGDVTYSFNPARRSSKYSTNDFFDGVTYSIDLRQPAGSRITDLRLTDGTPVTDKMPIRLGMNSYRMGHLTQKGGALEGQSFPVLSDSKAQYGEEEGTIRNLTLRYLTEVKKGQYQGLPQQRWKLVGMEGYEPQRAIVKSLLNQGIIRVPTTDDGRYTNVASINVKDALFSDAAGYNAALSSLEKQRGNSNDAMQKQRLQDRIALIKALNSF
>NC_015566.1|WP_004949757.1|1360588_1361461_+|succinate--CoA-ligase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTQHLGLPVFNTVREAVEATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDTGLGQSTCVGIGGDPIPGSNFIDILKMFQEDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEAVKAVLNR
>NC_015566.1|WP_004949756.1|1359422_1360589_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGSGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAEAWLGKRLVTYQTDALGQPVHQILVEAATDIDKELYLGAVVDRASRRVVFMASTEGGVEIEKVAEETPELIHKMTIDPLAGPQPYQGRELAFKLGLTGKQVGQFAKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQSELREMRDPSQEDERESRAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAATSLTDAAQQVVAAVEGK
>NC_015566.1|WP_004949773.1|1370466_1371759_+|Tol-Pal-system-protein-TolB
MKQAFRVALGFLILWASVLHAEVRIEITQGVDSARPIGVVPFKWAGPGTPPEDIGKIVGADLRNSGKFNPIDVARMPQQPTSASEVTPAAWTALGIDAVVVGQVQPGADGGYLISYQLVDTSGSPGTVLAQNQYKVTKQWLRYSAHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGKFPYELRVADYDGYNQFVVHRSPEPLMSPAWSPDGSKLAYVTFESGRSALVVQTLANGAIRQIASFPRHNGAPAFSPDGSRLAFALSKSGSLNLYVMNLGSGQITQITDGRSNNTEPTWFPDGQSLAYTSDQGGRPQIYKVSASGGASQRLTWEGSQNQDSEVSSDGKFLVMVSSNSGAQHIAKQDLGSGAVQVLTGTFLDETPSIAPNGTMVIYSSTQGMGSVLQLVSTDGRFKARLPATDGQVKFPAWSPYL
>NC_015566.1|WP_013811931.1|1371803_1372319_+|peptidoglycan-associated-lipoprotein-Pal
MQLNKVLKGLLLALPVLAVAACSSNKSANNDQSGLGAGAGTGTENGSSNLSSEEQARLQMQELQKNNIVYFGLDKYDVSSEFAQMLDAHSAFLRNNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVLVY
>NC_015566.1|WP_013811932.1|1372328_1373126_+|cell-division-protein-CpoB
MNSNFRRHLLSLSLLVGVAVPWAATAQAPISNVGSGSVEDRVTSLERISNAQGQLLNQLQQQLSDNQRDIDSLRGQIQESQYQLNQVVERQKQIYQQMDSISQGGAQSSAAAAGAAGGAAAAASTDGADSAPAGASAAPASTGDENSDYNAAVSLALEKKQYDQAISAFQTFVKQYPKSTYQPNANYWLGQLFYNKGKKDDAAYYFAVVVKNYAKSPKAPDAMYKVGIIMQEKGQADKAKAVFQQVIKQYPTSAAAKQAKSRVAG
>NC_015566.1|WP_013811933.1|1374715_1375777_+|quinolinate-synthase-NadA
MSEMFDVNAAVYPFPPKPVPLDVAEKAFYREKIKTLLKQRNAVMVAHYYTDPEIQALAEETGGCVADSLEMARFGSNHPASTLLVAGVRFMGETAKILSPEKQVLMPTLNAECSLDLGCPEEEFHAFCDSHPDRTVVVYANTSAAVKARADWVVTSSIAVELIEHLDSLGEKIIWAPDRHLGNYVQKQTGADVLCWQGACIVHDEFKTQALMRMKALYPEAAILVHPESPQAVVDLADAVGSTSQLIQAAKTLPNPQLIVATDRGIFYKMQQACPDKELFEAPTAGEGATCRSCAHCPWMAMNGLKAIADGLEQGGALHEIHVDAALREKALIPLNRMLDFAAQLKMQVKGNA
>NC_015566.1|WP_013811934.1|1375803_1376529_+|nicotinamide-riboside-transporter-PnuC
MSFFSTSNILVHIPLGAGGYDLSWIEAIGTLFGLLCIWYASKEKIINYLFGLINVTLFAVIFFQIQLYASLLLQLFFFVANIYGWYAWSRQTQDNQAELKIRWLPLPKALAWAAVCVIGIALMTFNIDSVFAWLTQLAVTVMQGMGFSVQMPQLQPDAFPFWDSAMMVLSIVAMILMTRKYVENWLLWVVIDVISVAIFTYQGVYAMALEYVILTLIALNGSWLWIKSAGRNHSLPLSSSQ
>NC_015566.1|WP_013811935.1|1376566_1377529_-|CDF-family-zinc-transporter-ZitB
MTDSSQAHLPKDSNSKRLLTAFLVTAVFMIAEVAGGLISGSLALLADAGHMLTDAAALLVALMAVHFSQRKPNARHTFGYLRLTTLAAFLNAAALLVIVVFILWEAIRRFFEPQPVMGTPMLIIAIAGLLANLFAFWLLHRGTEEKNINVRAAALHVLGDLLGSVGAIVAAIVILSTGWTPIDPILSVLVSCLVLRSAWRLLKESFHELLEGTPQEVDINKLQKDLCLNIPEVRNIHHVHVWQIGEQKLMTLHAQVIPPNDHDGLLRRIQAYLLEHYRIGHVTIQMEYQHCDTPDCGINRAPEPSDHSHSGSHSHLGHHH
>NC_015566.1|WP_013811936.1|1377528_1380744_-|transporter-substrate-binding-domain-containing-protein
MMRGVLLLLAMLFNLGNVAYAAQPVSYQLVSNLNIPADMLIASEKNPWRDATLRVGIISENASPYNIIVDDDLYGLNADYLGYVQQVTGIRFQIYGFADLAQLEQALHNGAIDLLYGIPQNEALEDLKISQPYYVSNLRVLRDRSNDRRVMLNSADARVAISTLTDMQAGNALKAVSSHVQRYDNNLQAVYALLNGSSDYFIADEASASFIIDQLQLGQLYQIESTVNLGNLSFVFAADNPALIDTLNVAIADAPMELMNAIQSRWSKKIPSYLDTGNADLTQMEKSWVEKHRTVYYAAIENNFPFAYRGSDGQPRGYAIDILKIIAQNTGLRFAPLWARNAEQADQLVLSGQASFRTALPLARGVKARYSASMPIHRSLWGVYVGQYANGISTWSDLAGKRIGVLQGDLAQGLVPPNEELIHFADSKAMYDALANGQLDALVDNVISANFIALSRYAGAIKLAFAANNIAYPVAFGVRQDQPLLLAILDKNLMQIPSETLQSLRDEWIVDRSNLIDAVNDNRMQPQTTWLLALLAAAILLLLALTLRRFVLQRREKREREVIEQARRHAEAENRMKSKFLATISHELRTPMHAILGLLELELKRQPMPEGLPVIYSSASSLLNLLNDLQDYARLETGSLTLVPKAMALQPWIAHISALYQPLIGERPVTLSVTASHQLPAAVVIDGERLLQVANNLINNAIKFTPRGSIQVNIGWREQDKQQGELLLTVTDSGCGIAADEIGKLFQPFYRARGAQRVSVQGTGLGLSICKEIIEQMDGQIELHSQPGIGTQVKVSVPVTQAAPDAAPPRQNDQPLSLPPPTLRVALIDDHPTNLLLMERQLRHFGLQPALFEHGYALLKAHRRQPFDLLFIDYNMPRPDGLTLARLLRRDEQRYQRPACQIILCSADVQEFTRIPQGQVAIDRFLTKPISLAAIAQALPQQPQAQEGQLALTDMQRMLADMAGNDRQMAQRLATTLLSTLRQDRQRLDKAAEGEDWPSLGQSAHRIKGSLLMLQQPEAASLCQLLVESGRDGMLAQAAYTELSALVEQILIELDGLVSTDALYFALHKDK
>NC_015566.1|WP_013811937.1|1380740_1381346_-|response-regulator-transcription-factor
MPSLLLVDDHPVVHVALEAALMKSSRPYSLQAVQNDVQALAHLAAADFSLVILDIGLPQVDGLQLLKKIRRHYPQQPILIYTAQEEEIYARMAWAAGANGFVHKGSRLEQLVQAIETVLAGEPSFPAAAMAEETQPAEGVLLTPKELQILGLLSKGLSNLQIAEMLNISNKTVSTHKKNILRKTGASNLLELVAVFRELAP
>NC_015566.1|WP_004941813.1|1381552_1382605_+|3-deoxy-7-phosphoheptulonate-synthase-AroG
MNYQNDDLRIKEIKELLPPVALLEKFPATERAAETVSLARSAIHKILRGNDDRLLVVIGPCSIHDTKAAKEYAERLLTLRQELSGELEVVMRVYFEKPRTTVGWKGLINDPQMDNSFQINDGLRLARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELSSGLSCPVGFKNGTDGTIKVAIDAINAASAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAAHVKEVKDGLVKAGLPAQVMIDFSHANSSKQFKKQLEVNADVCKQVAGGEKAIIGVMIESHLVEGNQNLESGEPLVYGKSVTDACIGWEDTETVLRELAAAVKARRA
>NC_015566.1|WP_013811938.1|1382685_1383438_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MAVTKLVLVRHGESQWNNENRFTGWYDVDLSDKGRTEAKAAGKLLKDEGFSFDFAYTSVLKRAIHTLWNILDELDQAWLPTEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYSALTEKELPLTESLALTIDRVIPYWDEEILPRIKSGERVIVAAHGNSLRALVKYLDKLSEDEILELNIPTGVPLVYEFDENFKPIKRYYLGNADEIAAKAAAVANQGKAK

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Crispr_ID: NC_015566_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015566_3

1797622-1797757

Orphan

Consensus_repeat	Method
AAGCCTTGCAGGAAGCGGCGCTGCGTCAGGCGTTTGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015566_3

>merge|NC_015566|3|1797622-1797757|CRISPRCasFinder
AAGCCTTGCAGGAAGCGGCGCTGCGTCAGGCGTTTGCCGAACAGCAAAGCCAGCGCTACGGTGAGGAATACCCGCAAGAGAATCAAGATGATGAGCAAGCCTTGCAGGAAGCGGCGTTGCGTCAGGCGTTTGCCGA

>NC_015566|3|3|1797622-1797757|CRISPRCasFinder
AAGCCTTGCAGGAAGCGGCGCTGCGTCAGGCGTTTGCCGA	ACAGCAAAGCCAGCGCTACGGTGAGGAATACCCGCAAGAGAATCAAGATGATGAGC
AAGCCTTGCAGGAAGCGGCGTTGCGTCAGGCGTTTGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015566.1\|WP_013812277.1\|1788482_1790231_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NC_015566.1\|WP_004942626.1\|1809973_1810834_-\|formate-transporter-FocA	unknown	unknown	gnl\|CDD\|182746
NC_015566.1\|WP_013812279.1\|1792177_1792795_-\|glutathione-transferase-GstA	unknown	unknown	gnl\|CDD\|182533
NC_015566.1\|WP_013812285.1\|1803310_1803922_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_015566.1\|WP_013812280.1\|1792891_1793779_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_015566.1\|WP_013812286.1\|1804020_1804812_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_015566.1\|WP_013812289.1\|1806591_1807332_-\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NC_015566.1\|WP_006324539.1\|1793857_1794829_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NC_015566.1\|WP_013812278.1\|1790233_1792000_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NC_015566.1\|WP_013812283.1\|1800505_1801849_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NC_015566.1\|WP_013812275.1\|1784918_1787198_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NC_015566.1\|WP_004928347.1\|1784570_1784891_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_015566.1\|WP_013812287.1\|1804851_1805220_-\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|378058
NC_015566.1\|WP_013812290.1\|1807636_1809919_-\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NC_015566.1\|WP_013812276.1\|1787738_1788464_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NC_015566.1\|WP_013812288.1\|1805397_1806543_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|179614
NC_015566.1\|WP_013812282.1\|1799886_1800498_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NC_015566.1\|WP_002211347.1\|1787413_1787632_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NC_015566.1\|WP_004928318.1\|1795499_1795994_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NC_015566.1\|WP_013812284.1\|1801958_1803251_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461

Protein	Function_ID	Function_description	E-value
NC_015566.1\|WP_013812277.1\|1788482_1790231_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_015566.1\|WP_004942626.1\|1809973_1810834_-\|formate-transporter-FocA	gnl\|CDD\|182746	PRK10805, PRK10805, formate transporter; Provisional.	0
NC_015566.1\|WP_013812279.1\|1792177_1792795_-\|glutathione-transferase-GstA	gnl\|CDD\|182533	PRK10542, PRK10542, glutathionine S-transferase; Provisional.	2.08061e-81
NC_015566.1\|WP_013812285.1\|1803310_1803922_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.50276e-34
NC_015566.1\|WP_013812280.1\|1792891_1793779_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	9.70993e-39
NC_015566.1\|WP_013812286.1\|1804020_1804812_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.41515e-29
NC_015566.1\|WP_013812289.1\|1806591_1807332_-\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NC_015566.1\|WP_006324539.1\|1793857_1794829_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NC_015566.1\|WP_013812278.1\|1790233_1792000_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_015566.1\|WP_013812283.1\|1800505_1801849_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NC_015566.1\|WP_013812275.1\|1784918_1787198_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NC_015566.1\|WP_004928347.1\|1784570_1784891_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.2253e-50
NC_015566.1\|WP_013812287.1\|1804851_1805220_-\|DUF1801-domain-containing-protein	gnl\|CDD\|378058	pfam08818, DUF1801, Domain of unknown function (DU1801). This large family of bacterial proteins is uncharacterized. They contain a presumed domain about 110 amino acids in length.	1.41586e-10
NC_015566.1\|WP_013812290.1\|1807636_1809919_-\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NC_015566.1\|WP_013812276.1\|1787738_1788464_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	5.90184e-138
NC_015566.1\|WP_013812288.1\|1805397_1806543_+\|MFS-transporter	gnl\|CDD\|179614	PRK03633, PRK03633, putative MFS family transporter protein; Provisional.	0
NC_015566.1\|WP_013812282.1\|1799886_1800498_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	3.53756e-102
NC_015566.1\|WP_002211347.1\|1787413_1787632_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
NC_015566.1\|WP_004928318.1\|1795499_1795994_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.02041e-117
NC_015566.1\|WP_013812284.1\|1801958_1803251_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0

>NC_015566.1|WP_004928318.1|1795499_1795994_+|leucine-responsive-transcriptional-regulator-Lrp
MADNKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIHGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNSAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NC_015566.1|WP_006324539.1|1793857_1794829_-|thioredoxin-disulfide-reductase
MGTAKHSKLLILGSGPAGYTAAVYAARANLSPVLITGMEQGGQLTTTTEVENWPGDAEGLTGPALMERMREHAEKFQTEIVFDHINSVDLQNRPFRLFGDSGEYTCDALIIATGASARYLGMPSEDAFKGKGVSACATCDGFFYRNQKVAVVGGGNTAVEEALYLSNIAAEVHLIHRRDSFRSEKILIDRLMEKVKNGNIVLHTDHTLDEVLGDQMGVTGVRIRSTKADNATQELALAGVFIAIGHSPNTSIFGGQLELENGYIKVQSGIHGNATQTTIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGIAGAEVL
>NC_015566.1|WP_013812280.1|1792891_1793779_-|LysR-family-transcriptional-regulator
MQNLLHWRLLVAVADSGKITLAANQCGMTQSGASQAIAQLENALSTQLFVRLPHAVTLTQSGERIVIHARAMLAELDAIQNYALQAKSAHSGKIRLASFPSAFALLLPPLLRKFRRLYPAIELIQLEGTDQEVENWLALETADVGVVLNPKEERQGYPLGQDLWLAVTASDHPLARGRQPVDFKALAGLPFVLATGGCSLNAQRLAQQAGLALADIRVTVSDWGTALTLVREGVGVSLMPASVIPADTAGICALPLSIPLYRYFGLVCSFTGASSAPVHTLLHYLRDHLPYPVSS
>NC_015566.1|WP_013812279.1|1792177_1792795_-|glutathione-transferase-GstA
MKLYFAPDACSLSPHIVLRELELPFELIRVNNRSKRSADGNDFYQINPKGYVAALMLEDGRVITEGAAIVQYLADLRPDAALAPPSHTFERVRLQEWLNFITAEIHAGASPLFNATLQEEVKTLFRDKLRRRLDYVAQVLDGQDFLLGDRFSVADAYLFTVLRWMAPFSIELKYWPSLTRYMAQIGQRKSVQAALAAEAASREVK
>NC_015566.1|WP_013812278.1|1790233_1792000_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MKKTRQQQLTRWLKTQSTLAQRWLRLSMLLGLISGILIVVQAWLLAALLHALIIEHAPREQLIPSFIWLAATFALRALLSWLRERVGFICGQVVRQRMRQQVLDKLQQLGPAWIQGKPAGSWASIIVEQIEDMQDYYSRYLPQMYLAVFIPLLILITVFPINWAAGLILLTTAPLIPLFMALVGMGAADANRRNFVALARLSGNFLDRLRGLDTLRLFNRAEAETAQIAKSSEDFRSRTMEVLRLAFLSSAVLEFFASISIAVVAVYFGFSFLGELNFGSYGTGVTLFAGFLVLILAPEFFQPLRDLGAFYHAKAQAVGAAEALETFLGAEGEQRGTGTLELNTDAPLELKAQDLEILSPNGVLLAGPLSFTLPAHQRIALVGLSGAGKSSLLNLLLGFLPYRGSLTVNGTELCELSAEGWRRQLGWVGQNPHLPAQTLRANILLGHPQASEAQLQQAVEQAYVSEILPHLPLGLDTEVGDSAARLSVGQAQRVAVARALISPRRLLLLDEPAASLDAHSERRVMQALNAASYQQTTLLVTHQLEDTEDYDQIWVMEGGRIVQQGDYATLSAQPGLFANLIAHRSGEL
>NC_015566.1|WP_013812277.1|1788482_1790231_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRVLLPFLALYRRHSLLICLGILLAIVTLLASIGLLALSGWFLAASALAGLAGLFTFNYMLPAAGVRGAAIFRTAGRYAERVVSHDATFRVLSHLRVFTFKKILPLSPGGIARFRQADLLNRLVADVDTLDHLYLRVISPLVSAAVVILVVTYGLSWLDSSLALTLGGILLLLLLLVPPVFYRAGKPIGGQLTALRSQYRTDLTAWLQGQAELVVFGAVNDFRASLDATERHWQRRQWQQASLGGIAQGVMILASGLTVTLLLWLTAGGIGGDTQPGALIALFVFAALASFEALMPVAGAFQHLGQVIASATRVKQVIDRQPEVTFPASGPAAGNGAALSLQQLTFTYPGQPLPVLQNVTLEIAAGEHIALLGRTGCGKSTLLQLLTRAWNADSGSMLLNGQPLSAYDETTLRQMTTVVSQRVHIFSNTLRENLRIAAPKAPDEQLRDVLCQVGLEKLLENEGLNAWLGDGGRQLSGGEQRRLGIARALLHQAPLLLLDEPTEGLDAETEQQTLALLRRHCQGKTLILVTHRLYGLEHLDRICVMDGGRIVEQGDHLTLMRRQGRYARFRQRISGIPLENGL
>NC_015566.1|WP_013812276.1|1787738_1788464_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRIVKLSPQSLAFPSPEGALRDPNGLLAIGGDLTAPRLLAAYERGIFPWFSPGEAILWWSPDPRAVLFPAQYHISRSLKRFLSGNPFRITLNHDFAAVIAACADRPHEGTWIGPEVQRAYLHLHHLGLAHSVEVWQGKELVGGMYGVAQGALFCGESMFSRTTNASKCALLAFCRHFAAYGGELIDCQVLNAHTATLGAREIPRRQFLQQLSNLQRKPLAPECWAAQVLPPQQAEPPSPTN
>NC_015566.1|WP_002211347.1|1787413_1787632_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NC_015566.1|WP_013812275.1|1784918_1787198_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPAAREALEACTVDLAALRQELEAFIEQTTPTLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVSGANVLVAIFSEQESQAAYLLRKHDVSRLDVVNFISHGTRKDEPGQAPNAENPVNEEQSGGEDRMENFTTNLNQLARVGGIDPLIGRDPELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTLYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDKSSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPTPEETIQIINGLKTKYEAHHDVRYTAKAVRAAVELSVKYINDRHLPDKAIDVIDEAGARSRLMPISKRKKTVNVADIESVVARIARIPEKTVSASDRDVLRSLGDRLKMLVFGQDQAIEALTEAIKMSRAGLGHDRKPVGSFLFAGPTGVGKTEVTVQLAKAMDIKLLRFDMSEYMERHTVSRLIGAPPGYVGYDQGGLLTDAVLKHPHSVVLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVRETERKSIGLVQQDNSTDAMEEIKKVFTPEFRNRLDNILWFNHLSTTVIQQVVDKFIVELQAQLDAKGVSLEVSDEARDWLSVKGYDRAMGARPMARVMQENLKKPLANELLFGSLVDGGSVKVELDKDNQKLTYHFLSAQKRKADEGAVH
>NC_015566.1|WP_004928347.1|1784570_1784891_+|ATP-dependent-Clp-protease-adapter-ClpS
MGNNNDWLNFEHLAEEKQIDAVKPPSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLTVHYQGKAICGVFTAEVAETKVVHVNRYARENEHPLLCTLEKA
>NC_015566.1|WP_013812282.1|1799886_1800498_+|outer-membrane-lipoprotein-chaperone-LolA
MKKLLVACCLLSGFASTSVLADAAQDLQSRLAKVNSFHASFSQTVTSSDGAAVQQGEGELWVKRPNLFNWHMTSPDESVLVSDGQTLWFYNPFVEQVTATWLKNATGNTPFMLITRNDANDWKQYNVKQKGDDFELTPKSSSGNLKQFAITVTNSGTIRSFAAVEQDGQRSSYALKSQQNTAVDAAKFKFTPPKGVTLDDQRQ
>NC_015566.1|WP_013812283.1|1800505_1801849_+|replication-associated-recombination-protein-A
MSNMSLDFSQNEFQPLAARMRPTTLAQYIGQQHLLAAGKPLPRAIEAGQLHSMILWGPPGTGKTTLAELIGRYGQADVERISAVTSGIKEIREAIERARQNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALTAEDISQVLDQAMKDNSRGFGGQNIELPEETRRMLSELVGGDARRALNSLEMMADMAEIDAKGIRVLTPSLLKEVSGERSARFDNKGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRGMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMRDAREMADYDVPEHLRNAPTKLMKEMGLGAEYRYAHDEPNAYAAGEDYFPPEMAKTRYYHPTARGLEGKIGEKLAWLAEQDQNSPTKRYR
>NC_015566.1|WP_013812284.1|1801958_1803251_+|serine--tRNA-ligase
MLDPNLLRNELDAVAVKLARRGFKLDLDLLRSQEERRKVLQVESETLQAERNSRSKSIGAAKARGEDIEPLRREVNELGDKLDVAKAALDTLQTEIRDYALTLPNLPDDAVPNGKDDSENQEVCRWGEPRQYDFQVRDHVDLGEMAGGLDFAAAVKLTGSRFVVMKGQVARMHRALSQFMLDLHTEQHGYLEAYVPYLVNHATLYGTGQLPKFGDDLFHTKPLEEESDSSNYALIPTAEVPLTNLVRDEILEEESLPLKMTAHTPCFRAEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEELTGHAEKVLQLLNLPYRKVLLCTGDMGFGACKTYDLEVWLPAQDTYREISSCSNMWDFQARRMQARCRSKTEKKPRLVHTLNGSGLAVGRTLVAVLENYQQADGRIQVPEVLRPYMNGLEYIG
>NC_015566.1|WP_013812285.1|1803310_1803922_-|LysE-family-translocator
MNADFLFTSLLIVISPGTGALITLSTGLQQGTRSALVAAAGCTLGVLPHMLAAVTGLAALLQTSALAFGLVKYLGVVYLLFMGWETLREKGPLALSQTNSPSTDGALVRYAVVANALNPKLSIFFLAFLPQFITVGDAHPARTMLILSAVFAVMTFVIFSLYGAFAARVRHRILGNARVMHWIRWSVSLAFIGLAIKLALTSH
>NC_015566.1|WP_013812286.1|1804020_1804812_-|AraC-family-transcriptional-regulator
MKKRAIQIVPSRLRGMEMVTADTDFSFGRHTHDQFGIGLMDRGAQKSLSGRGRVESSAGDIITVNPGEVHDGSPLAGTRAWRMIYCHPERLNQCFADISEGRFTSGEFSRPVFSNHQLAACFNRLFCAVTQSDALAAQETLLVMTAALAEIPHPPLAFPQDGIVRAREMIDDGPGSPLTLAELAAEAGLSQYQLLRGFKRRTGLTPHAYLLQRRLLLARRLILAGDGLAEVADACGFADQSHMTRLFVRSFGYTPGSFSRQSA
>NC_015566.1|WP_013812287.1|1804851_1805220_-|DUF1801-domain-containing-protein
MKQTIDNAVGTLLADIGSTHGELLDVVQRVRQVVAATGGDVSESVKYGGIMFAHTAFFCGVFAYSGHVTVEFGRGYLLEDRHRMLEGGGKYRRHIKLYSVADVEAKHLANYARLAYELEPPR
>NC_015566.1|WP_013812288.1|1805397_1806543_+|MFS-transporter
MSAYSRPVLLLLCGLLLLTVSIAVLNTLVPLWLTHAQLSTGQVGMVSSSYFTGNLVGTLIAGKLIKRIGFTRSYHLACVVFAVATAGMALSLDFWSWMGWRFFAGIGCAWIWVIVESALLRSGNLSNRGQLLAAYMMVYYLGTVIGQLLLSLVSTELLNVVPWVATIIICAMLPMLFARVNSQHDEPQQAAVWPMLKRRSARLGINGCIISGIVLGSLYGLMPLYLSHQGMSDANVGYWMALLVSSGIVGQWPVGRLADRYGRLLVLRIQVFVVILASVAMLGNYAMAPALFILGCAGFTLYPVAMSWACEKALPHELVAMNQALLMSYTIGSLLGPSMTALLMQNYSDRLLFVMIAAVALVYLMMLLKKPNHHQTPLAAA
>NC_015566.1|WP_013812289.1|1806591_1807332_-|pyruvate-formate-lyase-1-activating-protein
MSVNGRIHSFESCGTVDGPGIRFIVFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKDTVAYRHFMNASGGGVTASGGEAILQAEFVRDWFRACQQEGINTCLDTNGFVRRYDPVIDELLDATDLVMLDLKQMNDDIHQNLVGVSNHRTLDFARYLAKRNQRTWIRYVVVPGWSDDDKSTHMLGEFTKDMTNIEKIELLPYHELGKHKWVAMGEEYKLDGVHPPKADTMDRVKGILESYGHKVIY
>NC_015566.1|WP_013812290.1|1807636_1809919_-|formate-C-acetyltransferase
MTELNEKLAKAWEGFSKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATQATSTLWDKVMEGIKLENRTHAPVDFDTNVVATITSHDAGYIAKELETIVGLQTDEPLKRALIPFGGIKMVEGSCKVYGRELDPQLKKVFTDYRKTHNQGVFDVYTKDILNCRKSGVLTGLPDAYGRGRIIGDYRRVALYGIDFLMADKLNQFKSLQSKLENGEDLEMTIQLREEIAEQHRALAQIKEMAAKYGCDISSPATTAQEAVQWTYFGYLAAVKSQNGAAMSFGRVSTFLDVFIERDIKAGKLNEEQAQELIDHLVMKLRMVRFLRTPEYDELFSGDPIWATESLAGMGVDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKYAAKVSIDTSSVQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKIQVGPKEAPMMDDVLDYDKVMERMDHFMDWLAKQYVTALNIIHYMHDKYSYEAALMALHDRDVYRTMACGIAGLSVAADSLSAIKYAKVSTIRDEDGLATDFKIEGEYPQFGNNDARVDDIACDLVERFMKKIQKLRTYRNAVPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDDVRKANLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLEAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM
>NC_015566.1|WP_004942626.1|1809973_1810834_-|formate-transporter-FocA
MKADNPFDLILPAATAKIAEDAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTAGVPFGLAKLVGGICFSLGLMLVVVSGADLFTSTVLIVIAKASGRISWSQLAANWLNVYIGNLIGALLFVALIWFSGEHMVANGQWGLNVLQTADHKLHHTFIEAVCLGILANLMVCLAVWMSYSGRSLMDKMFAMILPVGMFVASGFEHSIANMFMIPMGIVVKHFATPEFWQAVGATPEQFAHLTVSNFIIDNLIPVTIGNIIGGGLLVGLTYWVIYLRGGEQQH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015566_1	1.1\|501126\|32\|NC_015566\|PILER-CR,CRT	501126-501157	32	NC_015566.1	3633073-3633104	0	1.0
NC_015566_2	2.3\|1369646\|19\|NC_015566\|CRISPRCasFinder	1369646-1369664	19	NC_015566.1	1925479-1925497	1	0.947
NC_015566_2	2.3\|1369646\|19\|NC_015566\|CRISPRCasFinder	1369646-1369664	19	NC_015566.1	3083517-3083535	2	0.895

1. spacer 1.1|501126|32|NC_015566|PILER-CR,CRT matches to position: 3633073-3633104, mismatch: 0, identity: 1.0

aggtgcattttgttgctgccatctgagttctg	CRISPR spacer
aggtgcattttgttgctgccatctgagttctg	Protospacer
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2. spacer 2.3|1369646|19|NC_015566|CRISPRCasFinder matches to position: 1925479-1925497, mismatch: 1, identity: 0.947

ggcggaagaagcgaagaaa	CRISPR spacer
ggcggcagaagcgaagaaa	Protospacer
***** *************

3. spacer 2.3|1369646|19|NC_015566|CRISPRCasFinder matches to position: 3083517-3083535, mismatch: 2, identity: 0.895

ggcggaagaagcgaagaaa	CRISPR spacer
ggcggaagcaccgaagaaa	Protospacer
******** * ********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_005340	Enterobacteria phage PsP3, complete genome	28615-28646	0	1.0
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MK972710	Salmonella phage SI22, complete genome	28908-28939	0	1.0
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MF276773	Erwinia phage EtG, complete genome	28354-28385	0	1.0
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	U32222	Bacteriophage 186, complete sequence	28565-28596	0	1.0
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049459	Salmonella phage SW9, complete genome	28921-28952	0	1.0
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	KT630644	Salmonella phage SEN1, complete genome	27984-28015	0	1.0
NC_015566_1	1.1\|501126\|32\|NC_015566\|PILER-CR,CRT	501126-501157	32	MT843276	Serratia phage vB_SspS_OS31, complete genome	37416-37447	1	0.969
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	AF008938	Vibrio cholerae V86 phage putative replication protein gene, complete cds	5919-5950	2	0.938
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	KX774374	Salinivibrio phage SMHB1, complete genome	8744-8775	2	0.938
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_022747	Vibrio phage VPUSM 8, complete genome	11219-11250	2	0.938
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	KX058879	Vibrio phage VcP032, complete genome	10206-10237	2	0.938
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	AB374228	Vibrio phage kappa proviral DNA, complete genome	9855-9886	2	0.938
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	HG803181	Vibrio phage PV94 complete genome	10244-10275	2	0.938
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	AF125163	Bacteriophage K139, complete genome	10209-10240	2	0.938
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	KY271397	Klebsiella phage 3 LV-2017, complete genome	7602-7633	2	0.938
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_003313	Vibrio phage K139, complete genome	10209-10240	2	0.938
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	KU504502	UNVERIFIED: Vibrio phage 919TP, complete genome	10240-10271	2	0.938
NC_015566_2	2.1\|1369547\|25\|NC_015566\|CRISPRCasFinder	1369547-1369571	25	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1552738-1552762	2	0.92
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	KJ749827	Escherichia phage ECBP5, complete genome	5217-5248	3	0.906
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049477	Vibrio phage vB_ValM-yong1, complete genome	11470-11501	3	0.906
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MN563793	Vibrio phage Valm-yong1, complete genome	11470-11501	3	0.906
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_015969	UNVERIFIED_ORG: Enterobacter soli plasmid pENTAS02, complete sequence	23987-24018	3	0.906
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP022659	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence	6945-6976	3	0.906
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	KT630646	Salmonella phage SEN5, complete genome	30437-30468	3	0.906
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	KT630645	Salmonella phage SEN4, complete genome	30437-30468	3	0.906
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049429	Enterobacter phage phiT5282H, complete genome	15149-15180	3	0.906
NC_015566_1	1.7\|501126\|35\|NC_015566\|CRISPRCasFinder	501126-501160	35	MT843276	Serratia phage vB_SspS_OS31, complete genome	37413-37447	3	0.914
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	NC_005340	Enterobacteria phage PsP3, complete genome	28612-28646	3	0.914
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	MK972710	Salmonella phage SI22, complete genome	28905-28939	3	0.914
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	MF276773	Erwinia phage EtG, complete genome	28351-28385	3	0.914
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	U32222	Bacteriophage 186, complete sequence	28562-28596	3	0.914
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	NC_049459	Salmonella phage SW9, complete genome	28918-28952	3	0.914
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	KT630644	Salmonella phage SEN1, complete genome	27981-28015	3	0.914
NC_015566_2	2.1\|1369547\|25\|NC_015566\|CRISPRCasFinder	1369547-1369571	25	MG592492	Vibrio phage 1.118.A._10N.261.49.F6, partial genome	47936-47960	3	0.88
NC_015566_2	2.1\|1369547\|25\|NC_015566\|CRISPRCasFinder	1369547-1369571	25	MG592602	Vibrio phage 1.237.B._10N.261.52.C5, partial genome	46952-46976	3	0.88
NC_015566_2	2.1\|1369547\|25\|NC_015566\|CRISPRCasFinder	1369547-1369571	25	MG592471	Vibrio phage 1.098.O._10N.286.51.B9, partial genome	47869-47893	3	0.88
NC_015566_2	2.1\|1369547\|25\|NC_015566\|CRISPRCasFinder	1369547-1369571	25	MG592493	Vibrio phage 1.118.B._10N.261.49.F6, partial genome	47936-47960	3	0.88
NC_015566_2	2.1\|1369547\|25\|NC_015566\|CRISPRCasFinder	1369547-1369571	25	MG592601	Vibrio phage 1.237.A._10N.261.52.C5, partial genome	46890-46914	3	0.88
NC_015566_2	2.1\|1369547\|25\|NC_015566\|CRISPRCasFinder	1369547-1369571	25	MG592464	Vibrio phage 1.089.O._10N.261.51.F9, partial genome	47870-47894	3	0.88
NC_015566_2	2.1\|1369547\|25\|NC_015566\|CRISPRCasFinder	1369547-1369571	25	MG592397	Vibrio phage 1.012.O._10N.261.48.C12, partial genome	47997-48021	3	0.88
NC_015566_2	2.6\|1369793\|25\|NC_015566\|CRISPRCasFinder	1369793-1369817	25	KP087945	Eel River basin pequenovirus isolate c15138, complete genome	3989-4013	3	0.88
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	MT843275	Serratia phage vB_SspM_BZS1, complete genome	31927-31958	4	0.875
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	NC_016158	Escherichia phage HK639, complete genome	40396-40427	4	0.875
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	JF974339	Enterobacteria phage IME10, complete genome	2913-2944	4	0.875
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	KJ832078	Enterobacteria phage Sf101, complete genome	21981-22012	4	0.875
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	20911-20942	4	0.875
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_047854	Cronobacter phage ESSI-2, complete genome	21107-21138	4	0.875
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049393	Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1	20689-20720	4	0.875
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049394	Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1	20951-20982	4	0.875
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP038625	Arsenophonus nasoniae strain FIN plasmid pArsFIN13, complete sequence	21767-21798	4	0.875
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP038614	Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence	48730-48761	4	0.875
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP038618	Arsenophonus nasoniae strain FIN plasmid pArsFIN6, complete sequence	42554-42585	4	0.875
NC_015566_1	1.9\|501246\|35\|NC_015566\|CRISPRCasFinder	501246-501280	35	KJ749827	Escherichia phage ECBP5, complete genome	5217-5251	4	0.886
NC_015566_2	2.4\|1369688\|25\|NC_015566\|CRISPRCasFinder	1369688-1369712	25	MN586021	Arthrobacter phage Beagle, complete genome	69942-69966	4	0.84
NC_015566_2	2.6\|1369793\|25\|NC_015566\|CRISPRCasFinder	1369793-1369817	25	NZ_KM406416	Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence	81714-81738	4	0.84
NC_015566_2	2.6\|1369793\|25\|NC_015566\|CRISPRCasFinder	1369793-1369817	25	MT857002	Salmonella phage pSal-SNUABM-02, complete genome	137481-137505	4	0.84
NC_015566_2	2.6\|1369793\|25\|NC_015566\|CRISPRCasFinder	1369793-1369817	25	NC_047815	Erwinia phage vB_EamM_Yoloswag, complete genome	142901-142925	4	0.84
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	MN856003	Bacteriophage sp. isolate 1, complete genome	32357-32388	5	0.844
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	JF974301	Vibrio phage VD1, * SEQUENCING IN PROGRESS *, 5 unordered pieces	50476-50507	5	0.844
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	AF008938	Vibrio cholerae V86 phage putative replication protein gene, complete cds	5916-5950	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	KX774374	Salinivibrio phage SMHB1, complete genome	8741-8775	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	NC_022747	Vibrio phage VPUSM 8, complete genome	11216-11250	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	KX058879	Vibrio phage VcP032, complete genome	10203-10237	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	AB374228	Vibrio phage kappa proviral DNA, complete genome	9852-9886	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	HG803181	Vibrio phage PV94 complete genome	10241-10275	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	AF125163	Bacteriophage K139, complete genome	10206-10240	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	KY271397	Klebsiella phage 3 LV-2017, complete genome	7599-7633	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	NC_003313	Vibrio phage K139, complete genome	10206-10240	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	KU504502	UNVERIFIED: Vibrio phage 919TP, complete genome	10237-10271	5	0.857
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	JF974301	Vibrio phage VD1, * SEQUENCING IN PROGRESS *, 5 unordered pieces	50473-50507	5	0.857
NC_015566_2	2.6\|1369793\|25\|NC_015566\|CRISPRCasFinder	1369793-1369817	25	MN813687	Mycobacterium phage Onyinye, complete genome	15939-15963	5	0.8
NC_015566_1	1.9\|501246\|35\|NC_015566\|CRISPRCasFinder	501246-501280	35	NC_016158	Escherichia phage HK639, complete genome	40396-40430	6	0.829
NC_015566_1	1.9\|501246\|35\|NC_015566\|CRISPRCasFinder	501246-501280	35	MT843275	Serratia phage vB_SspM_BZS1, complete genome	31924-31958	6	0.829
NC_015566_1	1.9\|501246\|35\|NC_015566\|CRISPRCasFinder	501246-501280	35	JF974339	Enterobacteria phage IME10, complete genome	2910-2944	6	0.829
NC_015566_1	1.9\|501246\|35\|NC_015566\|CRISPRCasFinder	501246-501280	35	MN856003	Bacteriophage sp. isolate 1, complete genome	32354-32388	6	0.829
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	NC_049477	Vibrio phage vB_ValM-yong1, complete genome	11467-11501	6	0.829
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	MN563793	Vibrio phage Valm-yong1, complete genome	11467-11501	6	0.829
NC_015566_2	2.2\|1369595\|28\|NC_015566\|CRISPRCasFinder	1369595-1369622	28	MN694020	Marine virus AFVG_250M542, complete genome	28713-28740	6	0.786
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	NC_007930	Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence	133651-133684	6	0.824
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	19614-19647	6	0.824
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	267559-267592	6	0.824
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	43554-43587	6	0.824
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	CP002037	Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence	133879-133912	6	0.824
NC_015566_2	2.6\|1369793\|25\|NC_015566\|CRISPRCasFinder	1369793-1369817	25	NZ_MN366361	Bacterium plasmid pALTS33, complete sequence	52908-52932	6	0.76
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	KF147891	Pseudomonas phage PaBG, complete genome	89248-89281	6	0.824
NC_015566_1	1.2\|501186\|32\|NC_015566\|PILER-CR,CRT	501186-501217	32	MN234220	Gordonia phage Lambo, complete genome	38225-38256	7	0.781
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	MK422452	Klebsiella phage ST13-OXA48phi12.2, complete genome	1656-1687	7	0.781
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	KU052037	Escherichia phage Rac-SA53, complete genome	13622-13653	7	0.781
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	KY914478	Escherichia phage ArgO145, complete genome	6410-6441	7	0.781
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	NC_031077	Enterobacter phage Tyrion, complete genome	38139-38170	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP025141	Klebsiella pneumoniae strain KP1768 plasmid KP1768_p1, complete sequence	33055-33086	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	80133-80164	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP021835	Klebsiella pneumoniae strain AR_0120 plasmid tig00000516_pilon, complete sequence	101138-101169	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP025144	Klebsiella pneumoniae strain NR5632 plasmid NR5632_p1, complete sequence	32907-32938	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP025147	Klebsiella pneumoniae strain KP1766 plasmid KP1766_p1, complete sequence	38359-38390	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NZ_CP018956	Escherichia coli strain Ecol_316 plasmid pEC316_KPC, complete sequence	19729-19760	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	KC139521	Salmonella phage FSL SP-004, complete genome	26840-26871	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MT713136	Aeromonas phage AP1, complete genome	242929-242960	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MT374857	Yersinia phage vB_YpM_46, complete genome	30031-30062	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MK907239	Escherichia phage vB_EcoM-12474V, complete genome	4583-4614	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	AF063097	Bacteriophage P2, complete genome	29882-29913	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	LR595885	Escherichia virus P2_4E6b genome assembly, chromosome: 1	28571-28602	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	JF461073	Escherichia phage fi125 CdtA (cdtA), CdtB (cdtB), and CdtC (cdtC) genes, complete cds; and DNA replication protein (gpA) gene, partial cds	2712-2743	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MK972713	Salmonella phage SW5, complete genome	7318-7349	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049390	Escherichia virus P2_4A7b genome assembly, chromosome: 1	29745-29776	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049386	Escherichia virus P2_2H1 genome assembly, chromosome: 1	28585-28616	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MK972714	Salmonella phage SW3, complete genome	7540-7571	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_001895	Enterobacteria phage P2, complete genome	29882-29913	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	AY135739	Bacteriophage WPhi, complete genome	28074-28105	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049387	Escherichia virus P2_4B2 genome assembly, chromosome: 1	28494-28525	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MT374855	Yersinia phage vB_YpM_22, complete genome	1849-1880	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_028896	Escherichia phage pro147, complete genome	27078-27109	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MN016939	Bacteriophage R18C, complete genome	29562-29593	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	AY251033	Bacteriophage L-413C, complete genome	28688-28719	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MK907238	Escherichia phage vB_EcoM-12474IV, complete genome	4604-4635	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MK907237	Escherichia phage vB_EcoM-12474III, complete genome	9388-9419	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_004745	Yersinia phage L-413C, complete genome	28688-28719	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049388	Escherichia virus P2_4C9 genome assembly, chromosome: 1	29095-29126	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049385	Escherichia virus P2_2H4 genome assembly, chromosome: 1	28351-28382	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	KF322032	Enterobacteria phage fiAA91-ss, complete genome	30352-30383	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_049460	Salmonella phage SI7, complete genome	27797-27828	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MK907236	Escherichia phage vB_EcoM-12474II, complete genome	4583-4614	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	NC_028943	Escherichia phage pro483, complete genome	5559-5590	7	0.781
NC_015566_1	1.4\|501306\|32\|NC_015566\|PILER-CR,CRT	501306-501337	32	MT374858	Yersinia phage vB_YpM_50, complete genome	1849-1880	7	0.781
NC_015566_1	1.9\|501246\|35\|NC_015566\|CRISPRCasFinder	501246-501280	35	KJ832078	Enterobacteria phage Sf101, complete genome	21978-22012	7	0.8
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	NC_047854	Cronobacter phage ESSI-2, complete genome	21107-21141	7	0.8
NC_015566_2	2.2\|1369595\|28\|NC_015566\|CRISPRCasFinder	1369595-1369622	28	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	14656-14683	7	0.75
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	174561-174594	7	0.794
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MH910042	Mycobacterium phage Scarlett, complete genome	5398-5431	7	0.794
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MH910038	Mycobacterium phage LeMond, complete genome	5398-5431	7	0.794
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MH910039	Mycobacterium phage Oscar, complete genome	5399-5432	7	0.794
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MK376955	Mycobacterium phage KiSi, complete genome	5398-5431	7	0.794
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	632319-632350	8	0.75
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	MK972713	Salmonella phage SW5, complete genome	7315-7349	8	0.771
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	MK972714	Salmonella phage SW3, complete genome	7537-7571	8	0.771
NC_015566_1	1.10\|501306\|35\|NC_015566\|CRISPRCasFinder	501306-501340	35	NC_049460	Salmonella phage SI7, complete genome	27794-27828	8	0.771
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	MN693229	Marine virus AFVG_25M533, complete genome	33415-33448	8	0.765
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	MT024865	Streptomyces phage Wakanda, complete genome	5507-5540	8	0.765
NC_015566_1	1.1\|501126\|32\|NC_015566\|PILER-CR,CRT	501126-501157	32	NZ_CP028100	Synechocystis sp. IPPAS B-1465 plasmid pSYSX, complete sequence	102935-102966	9	0.719
NC_015566_1	1.1\|501126\|32\|NC_015566\|PILER-CR,CRT	501126-501157	32	NC_005232	Synechocystis sp. PCC 6803 plasmid pSYSX, complete sequence	103667-103698	9	0.719
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	276346-276377	9	0.719
NC_015566_1	1.9\|501246\|35\|NC_015566\|CRISPRCasFinder	501246-501280	35	MK422452	Klebsiella phage ST13-OXA48phi12.2, complete genome	1653-1687	9	0.743
NC_015566_1	1.12\|501427\|35\|NC_015566\|CRISPRCasFinder	501427-501461	35	MN855782	Bacteriophage sp. isolate 43, complete genome	12599-12633	9	0.743
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MT889370	Gordonia phage GourdThymes, complete genome	53683-53716	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MG770211	Gordonia phage Flakey, complete genome	53663-53696	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	JQ067089	Pseudomonas phage PaMx28, partial genome	41060-41093	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MK801728	Gordonia phage Gorko, complete genome	52809-52842	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	47985-48018	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MN505213	Serratia phage JS26, complete genome	42243-42276	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MT108729	Pseudomonas phage Epa22, complete genome	13923-13956	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	NC_007810	Pseudomonas phage F8, complete genome	50917-50950	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	KF981875	Pseudomonas phage SPM-1, complete genome	33207-33240	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	LN610579	Pseudomonas phage vB_PaeM_PAO1_Ab27, complete genome	58350-58383	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MK875794	Microbacterium phage Chepli, complete genome	23493-23526	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	DQ163917	Bacteriophage F8, complete genome	50917-50950	9	0.735
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MT133561	Pseudomonas phage goonie, complete genome	48913-48946	9	0.735
NC_015566_1	1.2\|501186\|32\|NC_015566\|PILER-CR,CRT	501186-501217	32	NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	28947-28978	10	0.688
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	350476-350507	10	0.688
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	300527-300558	10	0.688
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	357061-357092	10	0.688
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	MN850624	Escherichia phage usur, complete genome	26438-26471	10	0.706
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	MN850617	Escherichia phage forsur, complete genome	41746-41779	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	NC_004934	Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence	94478-94511	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	NC_042080	Pseudomonas phage vB_PaeM_E215, complete genome	38080-38113	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	FJ168661	Mycobacterium phage Gumball, complete genome	42594-42627	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	FJ168662	Mycobacterium phage Troll4, complete genome	42530-42563	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	JF937107	Mycobacterium phage SirHarley, complete genome	42576-42609	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MN119378	Mycobacterium phage Penelope2018, complete genome	42445-42478	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MK524498	Mycobacterium phage Chill, complete genome	42507-42540	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	NC_047866	Aeromonas phage Ahp1, complete genome	23516-23549	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MN284908	Mycobacterium phage Helpful, complete genome	42773-42806	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	DQ398047	Mycobacterium phage PBI1, complete genome	42331-42364	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MH316562	Mycobacterium phage Erk16, complete genome	42546-42579	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MH834615	Mycobacterium phage KandZ, complete genome	42528-42561	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MK494102	Mycobacterium phage WaldoWhy, complete genome	42507-42540	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MT889385	Mycobacterium phage Thoth, complete genome	42398-42431	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	DQ398051	Mycobacterium phage PLot, complete genome	42427-42460	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MK559427	Mycobacterium phage Delton, complete genome	42798-42831	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	JN699014	Mycobacterium phage Nova, complete genome	42856-42889	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	FJ168660	Mycobacterium phage Butterscotch, complete genome	42400-42433	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MN234227	Mycobacterium phage Giuseppe, complete genome	42368-42401	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MH025888	Mycobacterium phage BigMama, complete genome	42416-42449	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	MH399788	Mycobacterium phage Visconti, complete genome	42410-42443	10	0.706
NC_015566_2	2.7\|1369841\|34\|NC_015566\|CRISPRCasFinder	1369841-1369874	34	EU676000	Mycobacterium phage Adjutor, complete genome	42340-42373	10	0.706
NC_015566_1	1.3\|501246\|32\|NC_015566\|PILER-CR,CRT	501246-501277	32	NC_011981	Agrobacterium vitis S4 plasmid pAtS4e, complete sequence	523944-523975	11	0.656
NC_015566_2	2.5\|1369736\|34\|NC_015566\|CRISPRCasFinder	1369736-1369769	34	NC_021776	Vibrio phage vpms1, complete genome	16234-16267	11	0.676

1. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_005340 (Enterobacteria phage PsP3, complete genome) position: , mismatch: 0, identity: 1.0

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagagggcgc	Protospacer
********************************

2. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MK972710 (Salmonella phage SI22, complete genome) position: , mismatch: 0, identity: 1.0

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagagggcgc	Protospacer
********************************

3. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MF276773 (Erwinia phage EtG, complete genome) position: , mismatch: 0, identity: 1.0

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagagggcgc	Protospacer
********************************

4. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to U32222 (Bacteriophage 186, complete sequence) position: , mismatch: 0, identity: 1.0

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagagggcgc	Protospacer
********************************

5. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049459 (Salmonella phage SW9, complete genome) position: , mismatch: 0, identity: 1.0

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagagggcgc	Protospacer
********************************

6. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to KT630644 (Salmonella phage SEN1, complete genome) position: , mismatch: 0, identity: 1.0

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagagggcgc	Protospacer
********************************

7. spacer 1.1|501126|32|NC_015566|PILER-CR,CRT matches to MT843276 (Serratia phage vB_SspS_OS31, complete genome) position: , mismatch: 1, identity: 0.969

aggtgcattttgttgctgccatctgagttctg	CRISPR spacer
aggtgcattttgttgctgccatctgagttatg	Protospacer
***************************** **

8. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to AF008938 (Vibrio cholerae V86 phage putative replication protein gene, complete cds) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggcggc	Protospacer
****************************  **

9. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to KX774374 (Salinivibrio phage SMHB1, complete genome) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggcggc	Protospacer
****************************  **

10. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_022747 (Vibrio phage VPUSM 8, complete genome) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggcggc	Protospacer
****************************  **

11. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to KX058879 (Vibrio phage VcP032, complete genome) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggcggc	Protospacer
****************************  **

12. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to AB374228 (Vibrio phage kappa proviral DNA, complete genome) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggcggc	Protospacer
****************************  **

13. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to HG803181 (Vibrio phage PV94 complete genome) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggcggc	Protospacer
****************************  **

14. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to AF125163 (Bacteriophage K139, complete genome) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggcggc	Protospacer
****************************  **

15. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to KY271397 (Klebsiella phage 3 LV-2017, complete genome) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgaggggccgc	Protospacer
*************************.** ***

16. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_003313 (Vibrio phage K139, complete genome) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggcggc	Protospacer
****************************  **

17. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to KU504502 (UNVERIFIED: Vibrio phage 919TP, complete genome) position: , mismatch: 2, identity: 0.938

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggcggc	Protospacer
****************************  **

18. spacer 2.1|1369547|25|NC_015566|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 2, identity: 0.92

cgaagcggataaagttgccaaggca	CRISPR spacer
cgaaacggagaaagttgccaaggca	Protospacer
****.**** ***************

19. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to KJ749827 (Escherichia phage ECBP5, complete genome) position: , mismatch: 3, identity: 0.906

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gctgcgctggctgcggagaatgcggggctgaa	Protospacer
* ***********.*********** ******

20. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049477 (Vibrio phage vB_ValM-yong1, complete genome) position: , mismatch: 3, identity: 0.906

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggagcc	Protospacer
****************************.  *

21. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MN563793 (Vibrio phage Valm-yong1, complete genome) position: , mismatch: 3, identity: 0.906

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgagaggagcc	Protospacer
****************************.  *

22. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_015969 (UNVERIFIED_ORG: Enterobacter soli plasmid pENTAS02, complete sequence) position: , mismatch: 3, identity: 0.906

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgaggggcggc	Protospacer
*************************.**  **

23. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP022659 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence) position: , mismatch: 3, identity: 0.906

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgaggggcggc	Protospacer
*************************.**  **

24. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to KT630646 (Salmonella phage SEN5, complete genome) position: , mismatch: 3, identity: 0.906

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgaggggcggc	Protospacer
*************************.**  **

25. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to KT630645 (Salmonella phage SEN4, complete genome) position: , mismatch: 3, identity: 0.906

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgaggggcggc	Protospacer
*************************.**  **

26. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049429 (Enterobacter phage phiT5282H, complete genome) position: , mismatch: 3, identity: 0.906

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccgaggggcggc	Protospacer
*************************.**  **

27. spacer 1.7|501126|35|NC_015566|CRISPRCasFinder matches to MT843276 (Serratia phage vB_SspS_OS31, complete genome) position: , mismatch: 3, identity: 0.914

aggtgcattttgttgctgccatctgagttctggtg	CRISPR spacer
aggtgcattttgttgctgccatctgagttatggct	Protospacer
***************************** ***.

28. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to NC_005340 (Enterobacteria phage PsP3, complete genome) position: , mismatch: 3, identity: 0.914

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagagggcgcagg	Protospacer
********************************.

29. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to MK972710 (Salmonella phage SI22, complete genome) position: , mismatch: 3, identity: 0.914

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagagggcgcagg	Protospacer
********************************.

30. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to MF276773 (Erwinia phage EtG, complete genome) position: , mismatch: 3, identity: 0.914

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagagggcgcagg	Protospacer
********************************.

31. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to U32222 (Bacteriophage 186, complete sequence) position: , mismatch: 3, identity: 0.914

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagagggcgcaga	Protospacer
********************************.

32. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to NC_049459 (Salmonella phage SW9, complete genome) position: , mismatch: 3, identity: 0.914

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagagggcgcagg	Protospacer
********************************.

33. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to KT630644 (Salmonella phage SEN1, complete genome) position: , mismatch: 3, identity: 0.914

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagagggcgcagg	Protospacer
********************************.

34. spacer 2.1|1369547|25|NC_015566|CRISPRCasFinder matches to MG592492 (Vibrio phage 1.118.A._10N.261.49.F6, partial genome) position: , mismatch: 3, identity: 0.88

cgaagcggataaagttgccaaggca	CRISPR spacer
cgaagcggataaactcgccaaggaa	Protospacer
************* *.******* *

35. spacer 2.1|1369547|25|NC_015566|CRISPRCasFinder matches to MG592602 (Vibrio phage 1.237.B._10N.261.52.C5, partial genome) position: , mismatch: 3, identity: 0.88

cgaagcggataaagttgccaaggca	CRISPR spacer
cgaagcggataaactcgccaaggaa	Protospacer
************* *.******* *

36. spacer 2.1|1369547|25|NC_015566|CRISPRCasFinder matches to MG592471 (Vibrio phage 1.098.O._10N.286.51.B9, partial genome) position: , mismatch: 3, identity: 0.88

cgaagcggataaagttgccaaggca	CRISPR spacer
cgaagcggataaactcgccaaggaa	Protospacer
************* *.******* *

37. spacer 2.1|1369547|25|NC_015566|CRISPRCasFinder matches to MG592493 (Vibrio phage 1.118.B._10N.261.49.F6, partial genome) position: , mismatch: 3, identity: 0.88

cgaagcggataaagttgccaaggca	CRISPR spacer
cgaagcggataaactcgccaaggaa	Protospacer
************* *.******* *

38. spacer 2.1|1369547|25|NC_015566|CRISPRCasFinder matches to MG592601 (Vibrio phage 1.237.A._10N.261.52.C5, partial genome) position: , mismatch: 3, identity: 0.88

cgaagcggataaagttgccaaggca	CRISPR spacer
cgaagcggataaactcgccaaggaa	Protospacer
************* *.******* *

39. spacer 2.1|1369547|25|NC_015566|CRISPRCasFinder matches to MG592464 (Vibrio phage 1.089.O._10N.261.51.F9, partial genome) position: , mismatch: 3, identity: 0.88

cgaagcggataaagttgccaaggca	CRISPR spacer
cgaagcggataaactcgccaaggaa	Protospacer
************* *.******* *

40. spacer 2.1|1369547|25|NC_015566|CRISPRCasFinder matches to MG592397 (Vibrio phage 1.012.O._10N.261.48.C12, partial genome) position: , mismatch: 3, identity: 0.88

cgaagcggataaagttgccaaggca	CRISPR spacer
cgaagcggataaactcgccaaggaa	Protospacer
************* *.******* *

41. spacer 2.6|1369793|25|NC_015566|CRISPRCasFinder matches to KP087945 (Eel River basin pequenovirus isolate c15138, complete genome) position: , mismatch: 3, identity: 0.88

agctgctgacgccgagaagaaagcg	CRISPR spacer
agctgctgaccccgagaagaacgag	Protospacer
********** ********** * *

42. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to MT843275 (Serratia phage vB_SspM_BZS1, complete genome) position: , mismatch: 4, identity: 0.875

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gatgcgctggctgtggagaatgcggagatgcg	Protospacer
************************* * ** .

43. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to NC_016158 (Escherichia phage HK639, complete genome) position: , mismatch: 4, identity: 0.875

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gcggcgctggctgcggagaatgcggggctgaa	Protospacer
*  **********.*********** ******

44. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 4, identity: 0.875

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gcggcgctggctgcggagaatgcggggctgaa	Protospacer
*  **********.*********** ******

45. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to KJ832078 (Enterobacteria phage Sf101, complete genome) position: , mismatch: 4, identity: 0.875

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gcggcgctggctgtggagaatgcgtggctgaa	Protospacer
*  *********************  ******

46. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 4, identity: 0.875

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccaaggggcggc	Protospacer
**********************.**.**  **

47. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_047854 (Cronobacter phage ESSI-2, complete genome) position: , mismatch: 4, identity: 0.875

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccaaggggcggc	Protospacer
**********************.**.**  **

48. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049393 (Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1) position: , mismatch: 4, identity: 0.875

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccaaggggcggc	Protospacer
**********************.**.**  **

49. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049394 (Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1) position: , mismatch: 4, identity: 0.875

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccaaggggcggc	Protospacer
**********************.**.**  **

50. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP038625 (Arsenophonus nasoniae strain FIN plasmid pArsFIN13, complete sequence) position: , mismatch: 4, identity: 0.875

gtacagttattgacagaactccgagagggcgc-	CRISPR spacer
ctacagttattgccagaactccgag-gcgcgcc	Protospacer
 *********** ************ * ****

51. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 4, identity: 0.875

gtacagttattgacagaactccgagagggcgc-	CRISPR spacer
ctacagttattgccagaactccgag-gcgcgcc	Protospacer
 *********** ************ * ****

52. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP038618 (Arsenophonus nasoniae strain FIN plasmid pArsFIN6, complete sequence) position: , mismatch: 4, identity: 0.875

gtacagttattgacagaactccgagagggcgc-	CRISPR spacer
ctacagttattgccagaactccgag-gcgcgcc	Protospacer
 *********** ************ * ****

53. spacer 1.9|501246|35|NC_015566|CRISPRCasFinder matches to KJ749827 (Escherichia phage ECBP5, complete genome) position: , mismatch: 4, identity: 0.886

gatgcgctggctgtggagaatgcggtgctgaagtg	CRISPR spacer
gctgcgctggctgcggagaatgcggggctgaagag	Protospacer
* ***********.*********** ******* *

54. spacer 2.4|1369688|25|NC_015566|CRISPRCasFinder matches to MN586021 (Arthrobacter phage Beagle, complete genome) position: , mismatch: 4, identity: 0.84

gactgaagccgcagagaaaaaagcg	CRISPR spacer
cgctaaagccgccgagaaaaaagcg	Protospacer
 .**.******* ************

55. spacer 2.6|1369793|25|NC_015566|CRISPRCasFinder matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 4, identity: 0.84

agctgctgacgccgagaagaaagcg	CRISPR spacer
ggctgctgacgccgaggagaaacag	Protospacer
.***************.*****  *

56. spacer 2.6|1369793|25|NC_015566|CRISPRCasFinder matches to MT857002 (Salmonella phage pSal-SNUABM-02, complete genome) position: , mismatch: 4, identity: 0.84

agctgctgacgccgagaagaaagcg	CRISPR spacer
tgctgctgacgtcgtgaagaaagct	Protospacer
 **********.** *********

57. spacer 2.6|1369793|25|NC_015566|CRISPRCasFinder matches to NC_047815 (Erwinia phage vB_EamM_Yoloswag, complete genome) position: , mismatch: 4, identity: 0.84

agctgctgacgccgagaagaaagcg	CRISPR spacer
ggctgctgacgcgaagaagaaagct	Protospacer
.*********** .**********

58. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 5, identity: 0.844

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gagcagctggctgcggagaatgcggggctgaa	Protospacer
**   ********.*********** ******

59. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to JF974301 (Vibrio phage VD1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 5, identity: 0.844

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtacagttattgacagaactccaaggggcacc	Protospacer
**********************.**.**   *

60. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to AF008938 (Vibrio cholerae V86 phage putative replication protein gene, complete cds) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggcggcaga	Protospacer
****************************  **.

61. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to KX774374 (Salinivibrio phage SMHB1, complete genome) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggcggctgc	Protospacer
****************************  **  .

62. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to NC_022747 (Vibrio phage VPUSM 8, complete genome) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggcggcaga	Protospacer
****************************  **.

63. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to KX058879 (Vibrio phage VcP032, complete genome) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggcggcaga	Protospacer
****************************  **.

64. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to AB374228 (Vibrio phage kappa proviral DNA, complete genome) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggcggcaga	Protospacer
****************************  **.

65. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to HG803181 (Vibrio phage PV94 complete genome) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggcggcaga	Protospacer
****************************  **.

66. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to AF125163 (Bacteriophage K139, complete genome) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggcggcaga	Protospacer
****************************  **.

67. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to KY271397 (Klebsiella phage 3 LV-2017, complete genome) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgaggggccgctgc	Protospacer
*************************.** ***  .

68. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to NC_003313 (Vibrio phage K139, complete genome) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggcggcaga	Protospacer
****************************  **.

69. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to KU504502 (UNVERIFIED: Vibrio phage 919TP, complete genome) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggcggcaga	Protospacer
****************************  **.

70. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to JF974301 (Vibrio phage VD1, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 5, identity: 0.857

gtacagttattgacagaactccgagagggcgcgtt-	CRISPR spacer
gtacagttattgacagaactccaag-gggcacctgc	Protospacer
**********************.** ****.* *

71. spacer 2.6|1369793|25|NC_015566|CRISPRCasFinder matches to MN813687 (Mycobacterium phage Onyinye, complete genome) position: , mismatch: 5, identity: 0.8

agctgctgacgccgagaagaaagcg	CRISPR spacer
cgctgcagacgccgagaagaaactc	Protospacer
 ***** *************** .

72. spacer 1.9|501246|35|NC_015566|CRISPRCasFinder matches to NC_016158 (Escherichia phage HK639, complete genome) position: , mismatch: 6, identity: 0.829

gatgcgctggctgtggagaatgcggtgctgaagtg	CRISPR spacer
gcggcgctggctgcggagaatgcggggctgaaggc	Protospacer
*  **********.*********** *******

73. spacer 1.9|501246|35|NC_015566|CRISPRCasFinder matches to MT843275 (Serratia phage vB_SspM_BZS1, complete genome) position: , mismatch: 6, identity: 0.829

gatgcgctggctgtggagaatgcggtgctgaagtg	CRISPR spacer
gatgcgctggctgtggagaatgcggagatgcgcgg	Protospacer
************************* * ** .  *

74. spacer 1.9|501246|35|NC_015566|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 6, identity: 0.829

gatgcgctggctgtggagaatgcggtgctgaagtg	CRISPR spacer
gcggcgctggctgcggagaatgcggggctgaagga	Protospacer
*  **********.*********** ******* .

75. spacer 1.9|501246|35|NC_015566|CRISPRCasFinder matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 6, identity: 0.829

gatgcgctggctgtggagaatgcggtgctgaagtg	CRISPR spacer
gagcagctggctgcggagaatgcggggctgaagtc	Protospacer
**   ********.*********** ********

76. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to NC_049477 (Vibrio phage vB_ValM-yong1, complete genome) position: , mismatch: 6, identity: 0.829

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggagccaga	Protospacer
****************************.  *.

77. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to MN563793 (Vibrio phage Valm-yong1, complete genome) position: , mismatch: 6, identity: 0.829

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccgagaggagccaga	Protospacer
****************************.  *.

78. spacer 2.2|1369595|28|NC_015566|CRISPRCasFinder matches to MN694020 (Marine virus AFVG_250M542, complete genome) position: , mismatch: 6, identity: 0.786

ggaaactgaagccaagaaagaagccgcc	CRISPR spacer
agaaactgaagccaagaaagaacctaaa	Protospacer
.********************* *..

79. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to NC_007930 (Lactobacillus salivarius UCC118 plasmid pMP118, complete sequence) position: , mismatch: 6, identity: 0.824

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
aagagaagaagctgagaagaaagctgcagaagaa	Protospacer
 . ** .********************** ****

80. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 6, identity: 0.824

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
aagagaagaagctgagaagaaagctgcagaagaa	Protospacer
 . ** .********************** ****

81. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 6, identity: 0.824

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
aagagaagaagctgagaagaaagctgcagaagaa	Protospacer
 . ** .********************** ****

82. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 6, identity: 0.824

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
aagagaagaagctgagaagaaagctgcagaagaa	Protospacer
 . ** .********************** ****

83. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to CP002037 (Lactobacillus salivarius CECT 5713 plasmid pHN3, complete sequence) position: , mismatch: 6, identity: 0.824

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
aagagaagaagctgagaagaaagctgcagaagaa	Protospacer
 . ** .********************** ****

84. spacer 2.6|1369793|25|NC_015566|CRISPRCasFinder matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 6, identity: 0.76

agctgctgacgccgagaagaaagcg	CRISPR spacer
cgctgctgacgccgagaagattcac	Protospacer
 *******************

85. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to KF147891 (Pseudomonas phage PaBG, complete genome) position: , mismatch: 6, identity: 0.824

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
ggccaaggccgagaaggccgaaggcaagaaagcc	Protospacer
***..  ************* ** **********

86. spacer 1.2|501186|32|NC_015566|PILER-CR,CRT matches to MN234220 (Gordonia phage Lambo, complete genome) position: , mismatch: 7, identity: 0.781

gtccacgatctttttgtcgtccgtgtttactg-	CRISPR spacer
gtccacgatcttctggtcgtccg-gcatggtgc	Protospacer
************.* ******** *. *. **

87. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to MK422452 (Klebsiella phage ST13-OXA48phi12.2, complete genome) position: , mismatch: 7, identity: 0.781

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gtccaactggctgcggagaatgcggcgctgaa	Protospacer
* .  .*******.***********.******

88. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to KU052037 (Escherichia phage Rac-SA53, complete genome) position: , mismatch: 7, identity: 0.781

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gcggcgctggcggcggagaatgcggtaataaa	Protospacer
*  ******** *.************. *.**

89. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to KY914478 (Escherichia phage ArgO145, complete genome) position: , mismatch: 7, identity: 0.781

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gtggcgctggcggcggagaatgcggtaataaa	Protospacer
*  ******** *.************. *.**

90. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to NC_031077 (Enterobacter phage Tyrion, complete genome) position: , mismatch: 7, identity: 0.781

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
gttcagattgctgcggagaatgcggggctgaa	Protospacer
* *  * * ****.*********** ******

91. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP025141 (Klebsiella pneumoniae strain KP1768 plasmid KP1768_p1, complete sequence) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

92. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

93. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP021835 (Klebsiella pneumoniae strain AR_0120 plasmid tig00000516_pilon, complete sequence) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

94. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP025144 (Klebsiella pneumoniae strain NR5632 plasmid NR5632_p1, complete sequence) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

95. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP025147 (Klebsiella pneumoniae strain KP1766 plasmid KP1766_p1, complete sequence) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

96. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NZ_CP018956 (Escherichia coli strain Ecol_316 plasmid pEC316_KPC, complete sequence) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

97. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to KC139521 (Salmonella phage FSL SP-004, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

98. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MT713136 (Aeromonas phage AP1, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

99. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MT374857 (Yersinia phage vB_YpM_46, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

100. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MK907239 (Escherichia phage vB_EcoM-12474V, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

101. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to AF063097 (Bacteriophage P2, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

102. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to LR595885 (Escherichia virus P2_4E6b genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

103. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to JF461073 (Escherichia phage fi125 CdtA (cdtA), CdtB (cdtB), and CdtC (cdtC) genes, complete cds; and DNA replication protein (gpA) gene, partial cds) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

104. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtagagttattgacagaactccaagcgtcgcc	Protospacer
*** ******************.** *    *

105. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049390 (Escherichia virus P2_4A7b genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

106. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049386 (Escherichia virus P2_2H1 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

107. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtagagttattgacagaactccaagcgtcgcc	Protospacer
*** ******************.** *    *

108. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_001895 (Enterobacteria phage P2, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

109. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to AY135739 (Bacteriophage WPhi, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

110. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049387 (Escherichia virus P2_4B2 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

111. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MT374855 (Yersinia phage vB_YpM_22, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

112. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_028896 (Escherichia phage pro147, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

113. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MN016939 (Bacteriophage R18C, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

114. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to AY251033 (Bacteriophage L-413C, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

115. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MK907238 (Escherichia phage vB_EcoM-12474IV, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

116. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MK907237 (Escherichia phage vB_EcoM-12474III, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

117. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_004745 (Yersinia phage L-413C, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

118. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049388 (Escherichia virus P2_4C9 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

119. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049385 (Escherichia virus P2_2H4 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

120. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to KF322032 (Enterobacteria phage fiAA91-ss, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

121. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
gtagagttattgacagaactccaagcgtcgcc	Protospacer
*** ******************.** *    *

122. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MK907236 (Escherichia phage vB_EcoM-12474II, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

123. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to NC_028943 (Escherichia phage pro483, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

124. spacer 1.4|501306|32|NC_015566|PILER-CR,CRT matches to MT374858 (Yersinia phage vB_YpM_50, complete genome) position: , mismatch: 7, identity: 0.781

gtacagttattgacagaactccgagagggcgc	CRISPR spacer
ccacagttattgacaggactccgaggcgcggc	Protospacer
 .**************.********. *  **

125. spacer 1.9|501246|35|NC_015566|CRISPRCasFinder matches to KJ832078 (Enterobacteria phage Sf101, complete genome) position: , mismatch: 7, identity: 0.8

gatgcgctggctgtggagaatgcggtgctgaagtg	CRISPR spacer
gcggcgctggctgtggagaatgcgtggctgaataa	Protospacer
*  *********************  ******  .

126. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to NC_047854 (Cronobacter phage ESSI-2, complete genome) position: , mismatch: 7, identity: 0.8

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtacagttattgacagaactccaaggggcggctgc	Protospacer
**********************.**.**  **  .

127. spacer 2.2|1369595|28|NC_015566|CRISPRCasFinder matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 7, identity: 0.75

ggaaactgaagccaagaaagaagccgcc	CRISPR spacer
agcaactgaagccaaaaaagaagcaaaa	Protospacer
.* ************.******** .

128. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.794

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
cacatatgccgagaaggacgcagccgagaaagcc	Protospacer
 .*   *********** *******.********

129. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MH910042 (Mycobacterium phage Scarlett, complete genome) position: , mismatch: 7, identity: 0.794

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
tgctgcagccgagaaggccgcagcgaaagccgcc	Protospacer
 ***** ***************** **..  ***

130. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MH910038 (Mycobacterium phage LeMond, complete genome) position: , mismatch: 7, identity: 0.794

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
tgctgcagccgagaaggccgcagcgaaagccgcc	Protospacer
 ***** ***************** **..  ***

131. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MH910039 (Mycobacterium phage Oscar, complete genome) position: , mismatch: 7, identity: 0.794

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
tgctgcagccgagaaggccgcagcgaaagccgcc	Protospacer
 ***** ***************** **..  ***

132. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MK376955 (Mycobacterium phage KiSi, complete genome) position: , mismatch: 7, identity: 0.794

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
tgctgcagccgagaaggccgcagcgaaagccgcc	Protospacer
 ***** ***************** **..  ***

133. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.75

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
cgcgcgctggccgtggacaatgcggtggagat	Protospacer
 ..********.***** *********  **

134. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 8, identity: 0.771

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtagagttattgacagaactccaagcgtcgccggt	Protospacer
*** ******************.** *    ** *

135. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 8, identity: 0.771

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtagagttattgacagaactccaagcgtcgccggt	Protospacer
*** ******************.** *    ** *

136. spacer 1.10|501306|35|NC_015566|CRISPRCasFinder matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 8, identity: 0.771

gtacagttattgacagaactccgagagggcgcgtt	CRISPR spacer
gtagagttattgacagaactccaagcgtcgccggt	Protospacer
*** ******************.** *    ** *

137. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to MN693229 (Marine virus AFVG_25M533, complete genome) position: , mismatch: 8, identity: 0.765

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
catacgaaaagctgagaagaaagctgtagctgaa	Protospacer
*..*  ..******************.*** ***

138. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to MT024865 (Streptomyces phage Wakanda, complete genome) position: , mismatch: 8, identity: 0.765

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
ccgagaagccgctgagaagagagctgcggcagaa	Protospacer
*  ** .*  **********.******.******

139. spacer 1.1|501126|32|NC_015566|PILER-CR,CRT matches to NZ_CP028100 (Synechocystis sp. IPPAS B-1465 plasmid pSYSX, complete sequence) position: , mismatch: 9, identity: 0.719

aggtgcattttgttgctgccatctgagttctg	CRISPR spacer
ttgtgcattttgttgatgtcatctgcggcttt	Protospacer
  ************* **.****** * ..*

140. spacer 1.1|501126|32|NC_015566|PILER-CR,CRT matches to NC_005232 (Synechocystis sp. PCC 6803 plasmid pSYSX, complete sequence) position: , mismatch: 9, identity: 0.719

aggtgcattttgttgctgccatctgagttctg	CRISPR spacer
ttgtgcattttgttgatgtcatctgcggcttt	Protospacer
  ************* **.****** * ..*

141. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 9, identity: 0.719

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
atggcgatggctgaggagaatgcggtcccggc	Protospacer
.  *** ****** ************ *.*.

142. spacer 1.9|501246|35|NC_015566|CRISPRCasFinder matches to MK422452 (Klebsiella phage ST13-OXA48phi12.2, complete genome) position: , mismatch: 9, identity: 0.743

gatgcgctggctgtggagaatgcggtgctgaagtg	CRISPR spacer
gtccaactggctgcggagaatgcggcgctgaagca	Protospacer
* .  .*******.***********.*******..

143. spacer 1.12|501427|35|NC_015566|CRISPRCasFinder matches to MN855782 (Bacteriophage sp. isolate 43, complete genome) position: , mismatch: 9, identity: 0.743

---gctgggcatggctgcagaaatggagtcgatgtgtt	CRISPR spacer
tgcgttatcc---gctgaagaaatggagtcgatctgtt	Protospacer
   *.*.  *   **** *************** ****

144. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MT889370 (Gordonia phage GourdThymes, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
ggctgctgccgcgaaggccgctgccaccgtcccg	Protospacer
*********** ********* ****  .   *

145. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MG770211 (Gordonia phage Flakey, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
ggctgctgccgcgaaggccgctgccaccgtcccg	Protospacer
*********** ********* ****  .   *

146. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to JQ067089 (Pseudomonas phage PaMx28, partial genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggccgccgagaaggccgcagccaaggccgcg	Protospacer
 .  **.*********************.  **

147. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MK801728 (Gordonia phage Gorko, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
ggctgctgccgcgaaggccgctgccaccgtcccg	Protospacer
*********** ********* ****  .   *

148. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
acctgctgccaagaaggccgcacccaaggccgaa	Protospacer
. ********.*********** *****.  *

149. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MN505213 (Serratia phage JS26, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
ggctgctgctgagaaggccgctgccgacggggag	Protospacer
*********.*********** ***.* ...*

150. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MT108729 (Pseudomonas phage Epa22, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
gaaggcgaaggaaaaggccgcagccaaggaagcc	Protospacer
*.  ** .  **.***************.*****

151. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to NC_007810 (Pseudomonas phage F8, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
gaaggcgaaggaaaaggccgcagccaaggaagcc	Protospacer
*.  ** .  **.***************.*****

152. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to KF981875 (Pseudomonas phage SPM-1, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
gaaggcgaaggaaaaggccgcagccaaggaagcc	Protospacer
*.  ** .  **.***************.*****

153. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to LN610579 (Pseudomonas phage vB_PaeM_PAO1_Ab27, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
gaaggcgaaggaaaaggccgcagccaaggaagcc	Protospacer
*.  ** .  **.***************.*****

154. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MK875794 (Microbacterium phage Chepli, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
tggcgctgccaagaagcccgcagccaaggcacct	Protospacer
 * .******.***** ***********. * *.

155. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to DQ163917 (Bacteriophage F8, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
gaaggcgaaggaaaaggccgcagccaaggaagcc	Protospacer
*.  ** .  **.***************.*****

156. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MT133561 (Pseudomonas phage goonie, complete genome) position: , mismatch: 9, identity: 0.735

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
gaaggcgaaggaaaaggccgcagccaaggaagcc	Protospacer
*.  ** .  **.***************.*****

157. spacer 1.2|501186|32|NC_015566|PILER-CR,CRT matches to NZ_CP012886 (Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gtccacgatctttttgtcgtccgtgtttactg	CRISPR spacer
gcccacgatgtttttgtcgaccgtgccggtgc	Protospacer
*.******* ********* *****.. ..

158. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 10, identity: 0.688

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
ttcctgctggccgtggagcatgcggtgcaggg	Protospacer
  . .******.****** ********* *..

159. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 10, identity: 0.688

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
ttcctgctggccgtggagcatgcggtgcaggg	Protospacer
  . .******.****** ********* *..

160. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 10, identity: 0.688

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
ttcctgctggccgtggagcatgcggtgcaggg	Protospacer
  . .******.****** ********* *..

161. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to MN850624 (Escherichia phage usur, complete genome) position: , mismatch: 10, identity: 0.706

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
taagactgaggctgagaagaaagcggcagcagcc	Protospacer
.. ..* **.************** *******

162. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to MN850617 (Escherichia phage forsur, complete genome) position: , mismatch: 10, identity: 0.706

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
taagacagaggctgagaagaaagcggcagcagcc	Protospacer
.. ..*.**.************** *******

163. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to NC_004934 (Streptomyces violaceoruber strain SANK95570 plasmid pSV2, complete sequence) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
cgctgctgccaagaaggccgcggccgccaagagg	Protospacer
 *********.**********.***.  **..

164. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to NC_042080 (Pseudomonas phage vB_PaeM_E215, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
aaaggcgaaggaaaaggccgcagccaaggaagcc	Protospacer
..  ** .  **.***************.*****

165. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to FJ168661 (Mycobacterium phage Gumball, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

166. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to FJ168662 (Mycobacterium phage Troll4, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

167. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to JF937107 (Mycobacterium phage SirHarley, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

168. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MN119378 (Mycobacterium phage Penelope2018, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgcaaccaagcctgct	Protospacer
 .  ************ *****.*****   **.

169. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MK524498 (Mycobacterium phage Chill, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

170. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to NC_047866 (Aeromonas phage Ahp1, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
taaggctgccgaggaggccgctgccaaggctgct	Protospacer
 .  *********.******* ******.  **.

171. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MN284908 (Mycobacterium phage Helpful, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgcaaccaagcctgct	Protospacer
 .  ************ *****.*****   **.

172. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to DQ398047 (Mycobacterium phage PBI1, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

173. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MH316562 (Mycobacterium phage Erk16, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

174. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MH834615 (Mycobacterium phage KandZ, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

175. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MK494102 (Mycobacterium phage WaldoWhy, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

176. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MT889385 (Mycobacterium phage Thoth, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

177. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to DQ398051 (Mycobacterium phage PLot, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgcaaccaagcctgct	Protospacer
 .  ************ *****.*****   **.

178. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MK559427 (Mycobacterium phage Delton, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

179. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to JN699014 (Mycobacterium phage Nova, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

180. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to FJ168660 (Mycobacterium phage Butterscotch, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

181. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MN234227 (Mycobacterium phage Giuseppe, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

182. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MH025888 (Mycobacterium phage BigMama, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

183. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to MH399788 (Mycobacterium phage Visconti, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

184. spacer 2.7|1369841|34|NC_015566|CRISPRCasFinder matches to EU676000 (Mycobacterium phage Adjutor, complete genome) position: , mismatch: 10, identity: 0.706

ggctgctgccgagaaggccgcagccaagaaagcc	CRISPR spacer
caaggctgccgagaagcccgaagccaagcctgct	Protospacer
 .  ************ *** *******   **.

185. spacer 1.3|501246|32|NC_015566|PILER-CR,CRT matches to NC_011981 (Agrobacterium vitis S4 plasmid pAtS4e, complete sequence) position: , mismatch: 11, identity: 0.656

gatgcgctggctgtggagaatgcggtgctgaa	CRISPR spacer
tcaaggctggctgcggaaaatgcggtgcctgc	Protospacer
   . ********.***.**********. .

186. spacer 2.5|1369736|34|NC_015566|CRISPRCasFinder matches to NC_021776 (Vibrio phage vpms1, complete genome) position: , mismatch: 11, identity: 0.676

cgcagcggaagctgagaagaaagctgcagcagaa	CRISPR spacer
taatcaggaagctgcgaagaaagctgaagctggc	Protospacer
..    ******** *********** *** *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

847181 : 898530

Salmonella_phage(20.0%)

plate,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013811538.1\|847181_848228_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_006323649.1\|848478_849240_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.5e-56	47.2
WP_006323650.1\|849233_849860_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.1e-34	49.4
WP_013811539.1\|850185_851172_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	7.9e-08	38.6
WP_004950287.1\|851226_852225_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	9.4e-33	37.6
WP_013811540.1\|852306_854862_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	8.9e-27	23.6
WP_006317708.1\|855737_856055_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_013811541.1\|856066_857428_+	PTS N,N'-diacetylchitobiose transporter subunit IIC	NA	NA	NA	NA
WP_013811542.1\|857476_858862_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_013811543.1\|858861_859725_+	transcriptional regulator ChbR	NA	NA	NA	NA
WP_013811544.1\|859877_860639_+	chitin disaccharide deacetylase	NA	NA	NA	NA
WP_013811545.1\|860673_862068_-	MFS transporter	NA	NA	NA	NA
WP_013811546.1\|862322_862811_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	5.8e-28	48.4
WP_004950320.1\|862923_863988_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	6.4e-112	61.6
WP_004950322.1\|864052_864559_+	recombination regulator RecX	NA	NA	NA	NA
WP_013811547.1\|864691_867319_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.8e-81	37.4
WP_004950328.1\|867571_867757_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_004950329.1\|868816_869383_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_041415893.1\|869379_869808_+	DedA family protein	NA	NA	NA	NA
WP_013811549.1\|869890_871453_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_013811550.1\|871619_872135_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_013811551.1\|872204_873494_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_006323686.1\|873536_874328_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_006323687.1\|874497_875859_+	signal recognition particle protein	NA	NA	NA	NA
WP_004932501.1\|876075_876324_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004950368.1\|876342_876891_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_006323688.1\|876943_877711_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_004950372.1\|877765_878122_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_013811552.1\|878285_878504_-	ogr/Delta-like zinc finger family protein	Q37973	Salmonella_virus	1.8e-21	66.2
WP_013811553.1\|878593_879748_-	late control D family protein	Q6K1G4	Salmonella_virus	2.7e-92	45.4
WP_013811554.1\|879744_880206_-\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	1.9e-44	57.9
WP_013811555.1\|880218_882276_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	4.6e-26	29.1
WP_013811556.1\|882268_882403_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.7e-11	78.9
WP_012005306.1\|882423_882711_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.8e-24	60.2
WP_006323695.1\|882774_883284_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.3e-65	69.0
WP_013811557.1\|883297_884467_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	1.1e-181	78.7
WP_013811558.1\|884608_885157_-\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	5.5e-35	45.3
WP_013811559.1\|885153_886893_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	7.6e-54	47.7
WP_013811560.1\|886889_890183_-\|tail	phage tail protein I	A0A2L0V120	Salmonella_phage	2.9e-272	48.7
WP_013811561.1\|890175_891084_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.4e-123	77.2
WP_013811562.1\|891088_891439_-	GPW/gp25 family protein	F1BUP4	Erwinia_phage	3.8e-37	66.4
WP_013811563.1\|891435_892071_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	3.7e-59	55.4
WP_013811564.1\|892159_892624_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	9.1e-39	56.3
WP_013811565.1\|892693_893206_-	lysozyme	A0A218M4K3	Erwinia_phage	4.8e-57	64.7
WP_006323707.1\|893189_893408_-	hypothetical protein	B6SD15	Bacteriophage	2.1e-06	50.9
WP_041415897.1\|893411_893615_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	1.7e-21	68.7
WP_013811567.1\|893820_894015_-	hypothetical protein	NA	NA	NA	NA
WP_013811568.1\|894349_894571_-	TraR/DksA C4-type zinc finger protein	A0A0M4S5Q7	Salmonella_phage	1.3e-11	51.4
WP_013811569.1\|894646_894955_-	hypothetical protein	NA	NA	NA	NA
WP_013811570.1\|895184_896081_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	6.6e-62	44.0
WP_006323713.1\|896127_896892_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_006323715.1\|897456_898530_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.6e-89	50.3

DBSCAN-SWA_2

1694442 : 1703464

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013812209.1\|1694442_1695867_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	4.6e-57	31.2
WP_013812210.1\|1695882_1697250_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	3.3e-36	27.8
WP_013812211.1\|1697364_1698381_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.7e-77	44.0
WP_004942423.1\|1698780_1699314_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	7.0e-59	58.7
WP_013812212.1\|1699313_1700180_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.1e-41	40.5
WP_013812213.1\|1700351_1701194_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_013812214.1\|1701318_1702152_+	ABC transporter permease	NA	NA	NA	NA
WP_013812215.1\|1702141_1703464_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-15	28.6

DBSCAN-SWA_3

2197961 : 2222161

Moraxella_phage(50.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013812599.1\|2197961_2198894_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013812600.1\|2198913_2201403_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_013812601.1\|2201410_2202175_-	molecular chaperone	NA	NA	NA	NA
WP_013812602.1\|2202198_2202747_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013812603.1\|2202752_2203256_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013812604.1\|2203258_2203798_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013812605.1\|2204070_2205507_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_013812606.1\|2205608_2208239_-	PqiB family protein	NA	NA	NA	NA
WP_041416567.1\|2208207_2209455_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_013812608.1\|2210058_2210556_+	GAF domain-containing protein	NA	NA	NA	NA
WP_004943519.1\|2210651_2211362_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_013812609.1\|2211381_2213427_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-85	34.3
WP_013812610.1\|2213521_2213902_+	DUF4260 domain-containing protein	NA	NA	NA	NA
WP_006320327.1\|2214098_2214977_+\|protease	protease HtpX	NA	NA	NA	NA
WP_013812611.1\|2215024_2216419_-	MFS transporter	NA	NA	NA	NA
WP_013812612.1\|2216649_2217441_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_013812613.1\|2217568_2218960_-	L-cystine transporter	NA	NA	NA	NA
WP_004943534.1\|2219142_2219691_-	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	3.7e-07	36.1
WP_013812614.1\|2220139_2220805_-	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_013812615.1\|2220868_2222161_-\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_4

2857048 : 2903931

Salmonella_phage(21.43%)

tail,portal,holin,protease,lysis,coat,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013813137.1\|2857048_2858095_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	2.3e-21	32.0
WP_013813138.1\|2858454_2859216_+	YciK family oxidoreductase	NA	NA	NA	NA
WP_013813139.1\|2859229_2859820_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_013813140.1\|2859864_2860761_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_013813141.1\|2860969_2861767_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_004945227.1\|2861918_2862278_-	hypothetical protein	NA	NA	NA	NA
WP_013813142.1\|2862392_2863013_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_013813143.1\|2863060_2863948_-	PHP domain-containing protein	NA	NA	NA	NA
WP_013813144.1\|2864319_2865882_+	anthranilate synthase component 1	NA	NA	NA	NA
WP_013813145.1\|2865881_2866463_+	glutamine amidotransferase	A0A0P0IKJ1	Acinetobacter_phage	3.7e-29	36.5
WP_004945243.1\|2866477_2867476_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.2e-53	37.9
WP_013813146.1\|2867479_2868841_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	2.0e-38	39.5
WP_004945250.1\|2868879_2870070_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_013813147.1\|2870069_2870876_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_013813148.1\|2871096_2871411_+	BON domain-containing protein	NA	NA	NA	NA
WP_013813149.1\|2871452_2872097_-	outer membrane protein OmpW	NA	NA	NA	NA
WP_013813150.1\|2872379_2872820_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_006321166.1\|2872919_2873672_+	UPF0259 family protein	NA	NA	NA	NA
WP_013813151.1\|2873719_2875423_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.6e-17	27.3
WP_013813152.1\|2875657_2876197_+	septation protein A	NA	NA	NA	NA
WP_004945276.1\|2876272_2876701_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_013813153.1\|2876764_2877499_-	TonB system transport protein TonB	NA	NA	NA	NA
WP_013813154.1\|2877736_2878390_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_004945285.1\|2878570_2878867_+	YciI family protein	NA	NA	NA	NA
WP_013813155.1\|2879275_2881237_-\|head,tail	tailspike head-binding protein	A0A249Y2B0	Serratia_phage	3.3e-82	35.7
WP_013813156.1\|2881378_2881627_+	Arc family DNA-binding protein	E7C9U8	Salmonella_phage	4.0e-17	54.5
WP_013813157.1\|2881648_2881936_-	hypothetical protein	Q76H12	Enterobacteria_phage	2.0e-20	53.6
WP_013813158.1\|2882008_2884696_-	lytic transglycosylase domain-containing protein	A0A2D1GLK8	Escherichia_phage	1.1e-99	31.8
WP_013813159.1\|2884695_2886078_-	phage DNA ejection protein	Q716G3	Shigella_phage	6.0e-62	48.0
WP_013813160.1\|2886087_2886738_-	hypothetical protein	Q2A0B2	Sodalis_phage	4.4e-23	45.8
WP_013813161.1\|2886731_2887193_-	DUF2824 family protein	Q2A0B3	Sodalis_phage	1.6e-64	76.7
WP_041416145.1\|2887192_2888020_-	hypothetical protein	A0A192Y6T9	Salmonella_phage	2.3e-40	62.0
WP_041416147.1\|2888019_2889447_-	Packaged DNA stabilization protein gp10	A0A075B8I2	Enterobacteria_phage	4.3e-204	69.3
WP_013813164.1\|2889418_2889922_-	DNA recombination protein RmuC	A0A2D1GLR5	Escherichia_phage	2.8e-49	63.6
WP_013813165.1\|2889941_2890211_-	hypothetical protein	NA	NA	NA	NA
WP_013813166.1\|2890259_2891549_-\|coat	coat protein	A0A2D1GLV2	Escherichia_phage	7.1e-190	74.9
WP_013813167.1\|2891548_2892460_-	scaffold protein	A0A192Y6T4	Salmonella_phage	2.7e-111	70.3
WP_013813168.1\|2892474_2894652_-\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	4.1e-307	75.3
WP_013813169.1\|2894655_2896161_-\|terminase	terminase	E7C9T5	Salmonella_phage	4.4e-260	82.9
WP_013813170.1\|2896141_2896702_-\|terminase	terminase small subunit	A0A1W6JNT5	Morganella_phage	8.4e-55	66.0
WP_013813171.1\|2896733_2897267_-	hypothetical protein	A0A192Y6U9	Salmonella_phage	7.3e-08	26.4
WP_013813172.1\|2897275_2897500_-	DUF2560 family protein	NA	NA	NA	NA
WP_013813173.1\|2897568_2897829_-	hypothetical protein	NA	NA	NA	NA
WP_013813174.1\|2897859_2898147_-	hypothetical protein	NA	NA	NA	NA
WP_013813175.1\|2898154_2898601_-\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	2.6e-19	44.4
WP_013813176.1\|2898597_2899209_-	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	4.8e-64	58.6
WP_041416149.1\|2899214_2899565_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.4e-28	52.3
WP_013813178.1\|2900035_2900458_-	antitermination Q family protein	B6SCZ7	Bacteriophage	2.5e-19	40.3
WP_013813179.1\|2900745_2902923_-	bifunctional DNA primase/polymerase	B6SD37	Bacteriophage	5.4e-166	68.6
WP_013813180.1\|2902926_2903136_-	transcriptional regulator	K7RWG7	Bacteriophage	4.9e-08	53.2
WP_013813181.1\|2903265_2903931_+	helix-turn-helix domain-containing protein	B6SCU0	Bacteriophage	1.3e-51	44.4

DBSCAN-SWA_5

2985604 : 3025789

Salmonella_phage(36.36%)

terminase,plate,integrase,holin

attL 2976385:2976399|attR 3030271:3030285

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2976385:2976399	attL	NA	NA	NA	NA
WP_013813250.1\|2985604_2986546_-	hypothetical protein	A9YX14	Burkholderia_phage	5.2e-17	35.1
WP_013813251.1\|2986546_2987125_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	6.6e-39	45.4
WP_013813252.1\|2987121_2988312_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	4.8e-108	54.7
WP_013813253.1\|2988304_2988655_-	hypothetical protein	A9YX11	Burkholderia_phage	1.6e-32	62.6
WP_013813254.1\|2988651_2989410_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	1.4e-84	64.1
WP_013813255.1\|2989464_2989785_-	hypothetical protein	NA	NA	NA	NA
WP_013813256.1\|2989789_2990134_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-17	42.0
WP_013813257.1\|2990144_2991206_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	4.5e-142	69.2
WP_013813258.1\|2991209_2991515_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	7.3e-21	50.5
WP_013813259.1\|2991511_2992117_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	3.4e-62	68.1
WP_013813260.1\|2992116_2994162_-	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	2.4e-208	57.2
WP_013813261.1\|2994340_2994769_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	6.0e-37	60.0
WP_013813262.1\|2994778_2995219_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	9.2e-49	67.1
WP_013813263.1\|2995230_2996712_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	1.1e-133	51.1
WP_013813264.1\|2996715_2997255_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	3.4e-53	56.4
WP_013813265.1\|2997255_2997648_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	2.0e-39	66.2
WP_013813266.1\|2997651_2998158_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.3e-22	43.8
WP_013813267.1\|2998154_2998568_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	6.2e-55	78.4
WP_013813268.1\|2998548_2998947_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	9.3e-16	50.5
WP_013813269.1\|2998988_2999930_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	6.1e-167	92.3
WP_013813270.1\|2999939_3000437_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	1.4e-74	84.8
WP_013813271.1\|3000441_3001674_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	4.7e-191	83.9
WP_041416155.1\|3001724_3002273_-	phage Mu F like family protein	A0A0M4REK0	Salmonella_phage	7.0e-46	53.5
WP_013813273.1\|3002328_3003795_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.8e-242	85.9
WP_013813274.1\|3003794_3005417_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	1.1e-304	93.0
WP_013813275.1\|3005540_3005768_+	hypothetical protein	NA	NA	NA	NA
WP_013813276.1\|3005802_3006813_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	9.8e-46	45.4
WP_013813277.1\|3006953_3007313_-	hypothetical protein	NA	NA	NA	NA
WP_013813278.1\|3007569_3007974_-	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_013813279.1\|3007955_3008594_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	9.8e-68	60.9
WP_013813280.1\|3008597_3008927_-\|holin	phage holin, lambda family	Q2A0C6	Sodalis_phage	2.8e-18	46.2
WP_013813281.1\|3009025_3009868_-	hypothetical protein	NA	NA	NA	NA
WP_013813282.1\|3010023_3010524_-	DUF1133 family protein	I6S672	Salmonella_phage	4.4e-47	58.1
WP_013813283.1\|3010520_3010808_-	DUF1364 domain-containing protein	A0A0M3LQ97	Mannheimia_phage	5.6e-31	64.2
WP_013813284.1\|3010804_3011398_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.3e-77	68.5
WP_013813285.1\|3011776_3012196_-	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_013813286.1\|3012365_3014657_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	6.4e-234	52.3
WP_013813287.1\|3014653_3015478_-	DNA adenine methylase	Q5QF26	Pseudomonas_virus	4.4e-68	48.9
WP_013813289.1\|3015584_3015830_-	hypothetical protein	H9C167	Pectobacterium_phage	7.7e-13	48.1
WP_013813290.1\|3015833_3016256_-	hypothetical protein	NA	NA	NA	NA
WP_013813291.1\|3016300_3017674_-	DNA helicase	Q76H51	Enterobacteria_phage	1.3e-112	48.8
WP_013813292.1\|3017670_3018477_-	hypothetical protein	A0A2H4JAA4	uncultured_Caudovirales_phage	1.1e-34	48.9
WP_041416160.1\|3018473_3018833_-	HNH endonuclease	A0A1C9LVX4	Vibrio_phage	1.8e-10	44.8
WP_013813293.1\|3018835_3019054_-	hypothetical protein	H9C163	Pectobacterium_phage	4.9e-19	62.3
WP_013813294.1\|3019080_3019533_-	hypothetical protein	H9C162	Pectobacterium_phage	9.8e-30	54.0
WP_041416161.1\|3019595_3019802_-	hypothetical protein	A0A1W6JP24	Morganella_phage	2.9e-05	39.0
WP_013813295.1\|3019882_3020269_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.1e-32	56.9
WP_013813297.1\|3020712_3021027_+	hypothetical protein	NA	NA	NA	NA
WP_013813298.1\|3021037_3021316_+	hypothetical protein	NA	NA	NA	NA
WP_013813299.1\|3021366_3023538_+	hypothetical protein	H9C157	Pectobacterium_phage	6.9e-105	35.8
WP_013813300.1\|3023534_3024092_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	4.6e-53	63.2
WP_013813301.1\|3024133_3024310_+	hypothetical protein	NA	NA	NA	NA
WP_013813303.1\|3024525_3024792_+	excisionase	A0A1V0E5M4	Salmonella_phage	6.8e-15	61.1
WP_013813304.1\|3024733_3025789_+\|integrase	tyrosine-type recombinase/integrase	K7PHK0	Enterobacteria_phage	1.2e-99	52.1
3030271:3030285	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3629864 : 3670229

Enterobacterial_phage(23.08%)

tail,portal,protease,holin,terminase,integrase

attL 3624816:3624829|attR 3673424:3673437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3624816:3624829	attL	NA	NA	NA	NA
WP_013813800.1\|3629864_3631940_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q7Y3Z0	Yersinia_phage	9.8e-16	37.8
WP_013813801.1\|3631991_3635369_-	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	6.2e-312	52.6
WP_013813802.1\|3635429_3636038_-\|tail	tail assembly protein	W0LI27	Edwardsiella_phage	2.6e-62	62.3
WP_013813803.1\|3636080_3636503_-	lipoprotein	K7PLY8	Enterobacterial_phage	2.6e-16	35.2
WP_013813804.1\|3636546_3637248_-	C40 family peptidase	A0A1W6JP31	Morganella_phage	8.0e-79	58.0
WP_013813805.1\|3637250_3638000_-\|tail	phage minor tail protein L	K7P7D8	Enterobacteria_phage	2.0e-83	58.0
WP_013813806.1\|3638008_3638362_-\|tail	phage tail protein	A0A1W6JP11	Morganella_phage	1.4e-18	39.5
WP_013813807.1\|3638361_3641487_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	3.8e-96	29.2
WP_013813808.1\|3641479_3641779_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.2e-23	56.6
WP_013813809.1\|3641799_3642207_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	1.7e-20	43.5
WP_013813810.1\|3642253_3642991_-\|tail	phage tail protein	K7P6G8	Enterobacteria_phage	7.6e-88	65.7
WP_013813811.1\|3643002_3643404_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	4.3e-45	60.2
WP_013813812.1\|3643400_3643964_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.9e-51	58.9
WP_013813813.1\|3643975_3644251_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	7.3e-20	46.2
WP_013813814.1\|3644243_3644567_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	1.6e-26	59.8
WP_013813815.1\|3644652_3646677_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	3.8e-291	76.3
WP_013813816.1\|3646618_3648127_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	5.9e-204	69.9
WP_013813817.1\|3648123_3648339_-	hypothetical protein	K7PMB5	Enterobacterial_phage	1.1e-20	72.9
WP_013813818.1\|3648335_3650444_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	3.1e-304	70.7
WP_013813819.1\|3650433_3650943_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.3e-41	53.4
WP_013813820.1\|3651227_3651476_-	DUF2560 family protein	NA	NA	NA	NA
WP_013813821.1\|3651539_3651794_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.2e-18	57.1
WP_013813822.1\|3651836_3652397_-	hypothetical protein	NA	NA	NA	NA
WP_013813823.1\|3652627_3653014_-	DUF2570 family protein	NA	NA	NA	NA
WP_013813824.1\|3653010_3653397_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	8.3e-54	78.7
WP_013813825.1\|3653403_3653682_-\|holin	phage holin family protein	A4PE35	Ralstonia_virus	9.0e-10	45.7
WP_013813826.1\|3653671_3654046_-	membrane protein	F1C592	Cronobacter_phage	9.7e-07	32.5
WP_013813827.1\|3654375_3655197_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	2.4e-50	39.2
WP_013813828.1\|3655193_3656231_-	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	8.8e-74	41.8
WP_013813829.1\|3656227_3658216_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.8e-213	54.8
WP_013813830.1\|3658212_3659082_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.1e-96	59.2
WP_013813831.1\|3659078_3659321_-	hypothetical protein	NA	NA	NA	NA
WP_013813832.1\|3659317_3660415_-	hypothetical protein	K7PLZ7	Enterobacterial_phage	1.3e-51	57.0
WP_013813833.1\|3660411_3660591_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_013813834.1\|3660592_3661267_-	phage regulatory protein/antirepressor Ant	D0UIL6	Aggregatibacter_phage	4.4e-58	56.8
WP_013813835.1\|3661263_3661452_-	hypothetical protein	NA	NA	NA	NA
WP_013813836.1\|3661517_3661991_-	hypothetical protein	K7PJS5	Enterobacterial_phage	5.1e-53	65.4
WP_041416245.1\|3662016_3662277_-	hypothetical protein	NA	NA	NA	NA
WP_013813837.1\|3662398_3662980_+	helix-turn-helix transcriptional regulator	A0A059NT51	Lactococcus_phage	1.8e-07	40.5
WP_013813838.1\|3663300_3663726_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.0e-57	82.3
WP_041416246.1\|3663722_3663878_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.0e-07	60.0
WP_013813839.1\|3664243_3664615_+	hypothetical protein	Q8HAA1	Salmonella_phage	8.6e-48	75.6
WP_013813840.1\|3664669_3665491_+	YfdQ family protein	A0A192Y6E5	Salmonella_phage	1.6e-94	63.3
WP_013813841.1\|3665575_3666109_+	hypothetical protein	A0A1W6JP41	Morganella_phage	1.8e-54	59.8
WP_013813842.1\|3666108_3666291_+	DUF1482 family protein	NA	NA	NA	NA
WP_013813843.1\|3666287_3666587_+	hypothetical protein	NA	NA	NA	NA
WP_013813844.1\|3666583_3666778_+	hypothetical protein	NA	NA	NA	NA
WP_013813845.1\|3666764_3667331_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013813846.1\|3667327_3668209_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_013813847.1\|3668205_3668784_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	5.8e-67	67.0
WP_013813848.1\|3668832_3669051_+	hypothetical protein	NA	NA	NA	NA
WP_013813849.1\|3669050_3670229_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2D1GN00	Marinobacter_phage	3.8e-33	31.4
3673424:3673437	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_015566.1|WP_013813835.1|3661263_3661452_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_015566.1|WP_013813835.1|3661263_3661452_-|hypothetical-protein

3661263_3661452_-

62 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.42105263157894735	0.9827586206896551

3629864-3670229

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_015566_1	Orphan	1.1\|501126\|32\|NC_015566\|PILER-CR,CRT	501126-501157	32	3633073-3633104	0

1. spacer 1.1|501126|32|NC_015566|PILER-CR,CRT matches to NC_015566 position: 3633073-3633104, mismatch: 0

aggtgcattttgttgctgccatctgagttctg	CRISPR spacer
aggtgcattttgttgctgccatctgagttctg	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015566

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information