CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015565	Desulfotomaculum nigrificans CO-1-SRB, complete sequence	5 crisprs	Cas14b_CAS-V-F,RT,cas14j,csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csx1,WYL,cas6,cas8b2,DinG,DEDDh	0	16	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015565_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015565_1

584618-587190

TypeI

I-C

Consensus_repeat	Method
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CRT

38 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_015565_1

>merge|NC_015565|1|584618-587190|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCCCCACACGGGCGCGTGGATTGAAACCCGTCAAAGAGGTTACTCCTGCTGCGAATCAGCAGTCGCGCCCCACACGGGCGCGTGGATTGAAACAATCAAGGCTTGAAGCAGGGAAGCCATTATGGGAGTCGCGCCCCACACGGGCGCGTGGATTGAAACAAAATACTCTTTACCCCGGTAAGTTTAGAATAAATAGTCGCGCCCCACACGGGCGCGTGGATTGAAACCCAAGCGAGTTAAACAGCAAAAACCTGAAGCTACGTCGCGCCCCACACGGGCGCGTGGATTGAAACAGCTTAAAAGGTAATAATTGGTTATCTCCATTAAGCGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGTTACCAAACATCCAAACCCCACCACTGAACATGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGAAGCTTCTGTATAGCGGTTAGATAGTTACTATCGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGTATCTTTTGGTCGTGCTGAAAATACCTTATAATGTCGCGCCCCACACGGGCGCGTGGATTGAAACAAAACATTAAGGCCAAGTTTACCAAAATCCCTAAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTAAACGACCTGACGAGTCAACCCACAAATGATAGTCGCGCCCCACACGGGCGCGTGGATTGAAACATAGTCAACGTAAAACATCTGTGGCATAGCTTGGTTGTCGCGCCCCACACGGGCGCGTGGATTGAAACAGTAGGTTGTGAAGGTCCTCAACTGACTTAATAGGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTTAGTAGCTTTTGGTTTTTTAGCAGTTGTAGTTGTCGCGCCCCACACGGGCGCGTGGATTGAAACCCAGTTTAGACGATATACAGGTAACAGCCAGGCTTAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGGAGACTCCCGCTCCAAATCTTCCAAAGTCTTAGTCGCGCCCCACACGGGCGCGTGGATTGAAACCAGCCTGAACGGTCTGTCCTCATCAACGAAAGCCGTCGCGCCCCACACGGGCGCGTGGATTGAAACCTCTGTCAGAACAAACCCCTCTGGCACCGGGATCGTCGCGCCCCACACGGGCGCGTGGATTGAAACCCAAAACCCCGCTGGACCACCTACAAGCAAATTAGTCGCGCCCCACACGGGCGCGTGGATTGAAACCTTTGGGACTGTCCCAACAATCCGCGATTATCTCGTCGCGCCCCACACGGGCGCGTGGATTGAAACACCTTTAACGCTGAATGAGCAGGTGTCGATTTGGGTCGCGCCCCACACGGGCGCGTGGATTGAAACCCGGAGTTTGAACCCAAAACATATGACCGGCTCTTGTCGCGCCCCACACGGGCGCGTGGATTGAAACAAATACTTTGGCAGGTCGAAGGCCAGTCATGGCGGTCGCGCCCCACACGGGCGCGTGGATTGAAACCGGCTTATCCGCATTTACGCCCGGCCCATGATAGGTCGCGCCCCACACGGGCGCGTGGATTGAAACTAAAGACAACAGGTATGAAGAATATCCATTTTATGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGTTATTTCAGTTATTACTATTTTGGCGCTAGGTCCATAAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGTACCGAGATGATTATTACAACCCCAATAGCAAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTCTAGGGATTGCCACCTACCAAGTAAGACAACCGTCGCGCCCCACACGGGCGCGTGGATTGAAACTACATATTTGAAAGGAGGAATTTTTTAAACAAATATAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTTAAGGAAGTCCAAAACAGCATTAGCGGCGTTAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGATACGCGCTCATTTTTCTTGCGTTGCAAATAACATGTCGCGCCCCACACGGGCGCGTGGATTGAAACCATTTGCTGTTGTAAGTATCGTTTGATGTTATCCCGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGCTACAATATATTTTGCCTACGCGTGTAACTTCAGTCGCGCCCCACACGGGCGCGTGGATTGAAACATTCCCAAATTGCTGCTAACAAATTTAACCTTTGTCGCGCCCCACACGGGCGCGTGGATTGAAACCCTTAAACAACGAGCCTAAAATGATAAACGCAACGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTTAACAAGGCAGATAGGGCTTAGAACAGACGAGGCTGTCGCGCCCCACACGGGCGCGTGGATTGAAACATGAAAAGTATGGTTGGGGAAAACGGATACTTAAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGATTCTATTTCTCCACCGATATCAAAAGCGCTAGGAGGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGGACAATTTGAAGAAGCAGCGGACCACATCATAGGCGTCGCGCCCCACACGGGCGCGTGGATTGAAAC

>NC_015565|1|1|584618-587190|PILER-CR
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCGTCAAAGAGGTTACTCCTGCTGCGAATCAGCA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AATCAAGGCTTGAAGCAGGGAAGCCATTATGGGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAAATACTCTTTACCCCGGTAAGTTTAGAATAAATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAAGCGAGTTAAACAGCAAAAACCTGAAGCTAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AGCTTAAAAGGTAATAATTGGTTATCTCCATTAAGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTTACCAAACATCCAAACCCCACCACTGAACAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGAAGCTTCTGTATAGCGGTTAGATAGTTACTATC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTATCTTTTGGTCGTGCTGAAAATACCTTATAAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAAACATTAAGGCCAAGTTTACCAAAATCCCTAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTAAACGACCTGACGAGTCAACCCACAAATGATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATAGTCAACGTAAAACATCTGTGGCATAGCTTGGTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AGTAGGTTGTGAAGGTCCTCAACTGACTTAATAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTAGTAGCTTTTGGTTTTTTAGCAGTTGTAGTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAGTTTAGACGATATACAGGTAACAGCCAGGCTTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGAGACTCCCGCTCCAAATCTTCCAAAGTCTTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CAGCCTGAACGGTCTGTCCTCATCAACGAAAGCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CTCTGTCAGAACAAACCCCTCTGGCACCGGGATC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAAAACCCCGCTGGACCACCTACAAGCAAATTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CTTTGGGACTGTCCCAACAATCCGCGATTATCTC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ACCTTTAACGCTGAATGAGCAGGTGTCGATTTGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCGGAGTTTGAACCCAAAACATATGACCGGCTCTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAATACTTTGGCAGGTCGAAGGCCAGTCATGGCG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CGGCTTATCCGCATTTACGCCCGGCCCATGATAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TAAAGACAACAGGTATGAAGAATATCCATTTTAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTTATTTCAGTTATTACTATTTTGGCGCTAGGTCCATAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTACCGAGATGATTATTACAACCCCAATAGCAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCTAGGGATTGCCACCTACCAAGTAAGACAACC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TACATATTTGAAAGGAGGAATTTTTTAAACAAATATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTAAGGAAGTCCAAAACAGCATTAGCGGCGTTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGATACGCGCTCATTTTTCTTGCGTTGCAAATAACAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CATTTGCTGTTGTAAGTATCGTTTGATGTTATCCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGCTACAATATATTTTGCCTACGCGTGTAACTTCA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATTCCCAAATTGCTGCTAACAAATTTAACCTTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCTTAAACAACGAGCCTAAAATGATAAACGCAAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTAACAAGGCAGATAGGGCTTAGAACAGACGAGGCT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATGAAAAGTATGGTTGGGGAAAACGGATACTTAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGATTCTATTTCTCCACCGATATCAAAAGCGCTAGGAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGACAATTTGAAGAAGCAGCGGACCACATCATAGGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC

>NC_015565|1|1|584618-587190|CRISPRCasFinder
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCGTCAAAGAGGTTACTCCTGCTGCGAATCAGCA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AATCAAGGCTTGAAGCAGGGAAGCCATTATGGGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAAATACTCTTTACCCCGGTAAGTTTAGAATAAATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAAGCGAGTTAAACAGCAAAAACCTGAAGCTAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AGCTTAAAAGGTAATAATTGGTTATCTCCATTAAGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTTACCAAACATCCAAACCCCACCACTGAACAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGAAGCTTCTGTATAGCGGTTAGATAGTTACTATC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTATCTTTTGGTCGTGCTGAAAATACCTTATAAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAAACATTAAGGCCAAGTTTACCAAAATCCCTAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTAAACGACCTGACGAGTCAACCCACAAATGATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATAGTCAACGTAAAACATCTGTGGCATAGCTTGGTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AGTAGGTTGTGAAGGTCCTCAACTGACTTAATAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTAGTAGCTTTTGGTTTTTTAGCAGTTGTAGTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAGTTTAGACGATATACAGGTAACAGCCAGGCTTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGAGACTCCCGCTCCAAATCTTCCAAAGTCTTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CAGCCTGAACGGTCTGTCCTCATCAACGAAAGCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CTCTGTCAGAACAAACCCCTCTGGCACCGGGATC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAAAACCCCGCTGGACCACCTACAAGCAAATTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CTTTGGGACTGTCCCAACAATCCGCGATTATCTC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ACCTTTAACGCTGAATGAGCAGGTGTCGATTTGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCGGAGTTTGAACCCAAAACATATGACCGGCTCTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAATACTTTGGCAGGTCGAAGGCCAGTCATGGCG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CGGCTTATCCGCATTTACGCCCGGCCCATGATAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TAAAGACAACAGGTATGAAGAATATCCATTTTAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTTATTTCAGTTATTACTATTTTGGCGCTAGGTCCATAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTACCGAGATGATTATTACAACCCCAATAGCAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCTAGGGATTGCCACCTACCAAGTAAGACAACC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TACATATTTGAAAGGAGGAATTTTTTAAACAAATATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTAAGGAAGTCCAAAACAGCATTAGCGGCGTTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGATACGCGCTCATTTTTCTTGCGTTGCAAATAACAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CATTTGCTGTTGTAAGTATCGTTTGATGTTATCCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGCTACAATATATTTTGCCTACGCGTGTAACTTCA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATTCCCAAATTGCTGCTAACAAATTTAACCTTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCTTAAACAACGAGCCTAAAATGATAAACGCAAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTAACAAGGCAGATAGGGCTTAGAACAGACGAGGCT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATGAAAAGTATGGTTGGGGAAAACGGATACTTAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGATTCTATTTCTCCACCGATATCAAAAGCGCTAGGAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGACAATTTGAAGAAGCAGCGGACCACATCATAGGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC

>NC_015565|1|1|584618-587190|CRT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCGTCAAAGAGGTTACTCCTGCTGCGAATCAGCA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AATCAAGGCTTGAAGCAGGGAAGCCATTATGGGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAAATACTCTTTACCCCGGTAAGTTTAGAATAAATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAAGCGAGTTAAACAGCAAAAACCTGAAGCTAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AGCTTAAAAGGTAATAATTGGTTATCTCCATTAAGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTTACCAAACATCCAAACCCCACCACTGAACAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGAAGCTTCTGTATAGCGGTTAGATAGTTACTATC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTATCTTTTGGTCGTGCTGAAAATACCTTATAAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAAACATTAAGGCCAAGTTTACCAAAATCCCTAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTAAACGACCTGACGAGTCAACCCACAAATGATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATAGTCAACGTAAAACATCTGTGGCATAGCTTGGTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AGTAGGTTGTGAAGGTCCTCAACTGACTTAATAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTAGTAGCTTTTGGTTTTTTAGCAGTTGTAGTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAGTTTAGACGATATACAGGTAACAGCCAGGCTTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGAGACTCCCGCTCCAAATCTTCCAAAGTCTTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CAGCCTGAACGGTCTGTCCTCATCAACGAAAGCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CTCTGTCAGAACAAACCCCTCTGGCACCGGGATC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAAAACCCCGCTGGACCACCTACAAGCAAATTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CTTTGGGACTGTCCCAACAATCCGCGATTATCTC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ACCTTTAACGCTGAATGAGCAGGTGTCGATTTGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCGGAGTTTGAACCCAAAACATATGACCGGCTCTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAATACTTTGGCAGGTCGAAGGCCAGTCATGGCG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CGGCTTATCCGCATTTACGCCCGGCCCATGATAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TAAAGACAACAGGTATGAAGAATATCCATTTTAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTTATTTCAGTTATTACTATTTTGGCGCTAGGTCCATAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGTACCGAGATGATTATTACAACCCCAATAGCAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCTAGGGATTGCCACCTACCAAGTAAGACAACC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TACATATTTGAAAGGAGGAATTTTTTAAACAAATATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTAAGGAAGTCCAAAACAGCATTAGCGGCGTTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGATACGCGCTCATTTTTCTTGCGTTGCAAATAACAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CATTTGCTGTTGTAAGTATCGTTTGATGTTATCCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGCTACAATATATTTTGCCTACGCGTGTAACTTCA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATTCCCAAATTGCTGCTAACAAATTTAACCTTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCTTAAACAACGAGCCTAAAATGATAAACGCAAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTAACAAGGCAGATAGGGCTTAGAACAGACGAGGCT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATGAAAAGTATGGTTGGGGAAAACGGATACTTAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGATTCTATTTCTCCACCGATATCAAAAGCGCTAGGAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGACAATTTGAAGAAGCAGCGGACCACATCATAGGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015565.1\|WP_013809678.1\|575429_576377_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133428
NC_015565.1\|WP_013809681.1\|579711_581490_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_015565.1\|WP_013809691.1\|599350_601102_+\|hydantoinase-B/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|376810
NC_015565.1\|WP_003541527.1\|573562_574252_+\|endonuclease	unknown	unknown	gnl\|CDD\|226098
NC_015565.1\|WP_013809682.1\|581505_582390_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_015565.1\|WP_013809689.1\|593436_593940_+\|hypothetical-protein	unknown	unknown	unknown
NC_015565.1\|WP_013809684.1\|583100_584132_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_015565.1\|WP_013809693.1\|601508_602615_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238525
NC_015565.1\|WP_013809687.1\|588901_589681_+\|ATPase-AAA	unknown	unknown	gnl\|CDD\|180607
NC_015565.1\|WP_013809677.1\|574292_575135_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|213747
NC_015565.1\|WP_013809690.1\|594426_596514_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_015565.1\|WP_013809683.1\|582409_583096_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|187768
NC_015565.1\|WP_013809679.1\|576845_579032_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015565.1\|WP_013809692.1\|601103_601439_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571
NC_015565.1\|WP_013809686.1\|587315_588905_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_015565.1\|WP_013809680.1\|579058_579715_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_015565.1\|WP_013809694.1\|602635_603985_+\|permease	unknown	unknown	gnl\|CDD\|271377
NC_015565.1\|WP_013809688.1\|592764_593283_+\|hypothetical-protein	unknown	unknown	unknown
NC_015565.1\|WP_013809685.1\|584146_584437_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015565.1\|WP_003541497.1\|604133_604763_+\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480

Protein	Function_ID	Function_description	E-value
NC_015565.1\|WP_013809678.1\|575429_576377_+\|L-lactate-dehydrogenase	gnl\|CDD\|133428	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NC_015565.1\|WP_013809681.1\|579711_581490_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_015565.1\|WP_013809691.1\|599350_601102_+\|hydantoinase-B/oxoprolinase-family-protein	gnl\|CDD\|376810	pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase. This family includes N-methylhydaintoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase EC:3.5.2.9 which catalyzes the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to pfam01968.	0
NC_015565.1\|WP_003541527.1\|573562_574252_+\|endonuclease	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	1.749e-39
NC_015565.1\|WP_013809682.1\|581505_582390_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.1796e-156
NC_015565.1\|WP_013809684.1\|583100_584132_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_015565.1\|WP_013809693.1\|601508_602615_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238525	cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.	4.66353e-117
NC_015565.1\|WP_013809687.1\|588901_589681_+\|ATPase-AAA	gnl\|CDD\|180607	PRK06526, PRK06526, transposase; Provisional.	1.68955e-66
NC_015565.1\|WP_013809677.1\|574292_575135_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|213747	TIGR02869, Spore_cortex-lytic_enzyme, spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination. [Cellular processes, Sporulation and germination].	6.84678e-40
NC_015565.1\|WP_013809690.1\|594426_596514_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	1.19749e-43
NC_015565.1\|WP_013809683.1\|582409_583096_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	2.0903e-30
NC_015565.1\|WP_013809679.1\|576845_579032_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	7.33665e-59
NC_015565.1\|WP_013809692.1\|601103_601439_+\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	7.71765e-11
NC_015565.1\|WP_013809686.1\|587315_588905_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.82149e-10
NC_015565.1\|WP_013809680.1\|579058_579715_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.99929e-116
NC_015565.1\|WP_013809694.1\|602635_603985_+\|permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	6.89979e-53
NC_015565.1\|WP_003541497.1\|604133_604763_+\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	7.27881e-27
NC_015565.1\|WP_013809685.1\|584146_584437_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.53086e-33

>NC_015565.1|WP_013809685.1|584146_584437_+|CRISPR-associated-endonuclease-Cas2
MMVLITYDVDTTTPEGRRRLRKVAKECVNYGQRVQKSVFECLLDPAQYADLKHRLNKMIDLNTDSLRFYLLGSNWKKRVEHIGTNESYDPEGVLLV
>NC_015565.1|WP_013809684.1|583100_584132_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVMTPDAYLAKEGENVLIRVQEEVKFRIPVHNLEGIVCFGYIGASPAVMALCAERNVALSFLTENGHFLARVTGPVSGNVLLRRKQYRMSDDPVECSKLACAFILGKTANCRTVLQRALRDHSETIQREQVEKAVVSLGTRIEKISRCNSLEILRGLEGEAARIYFSVFDHLILAQKDAFYFCERNRRPPLDNMNALLSFLYTLLMHDVQSALETVGLDPAVGFLHRDRPGRPGLALDLMEELRPFLADRLALSLINRKQIDAKGFIEKESGGIIMKEETRKIVLTAWQKRKQEEIKHPFLNEKIAVGLVPYAQALLLARYLRGDLDGYPVFFWK
>NC_015565.1|WP_013809683.1|582409_583096_+|CRISPR-associated-protein-Cas4
MDEDKFLPLSGIQHFAFCKRQWALIHIERLWSENILTIEGRHLHERVDNPFDIEKRGDLIVARSVPVVSRSLGLYGVVDVVEFHSVQKEQGEIGITLPGRAGHWLPRPVEYKRGRPKKDDRDIVQLCAQAICLEDMLAVPIEYGDIFYGEIRRRQRVLFDAAMRQRVANLALSMHELFEKGTTPPAESGPNCRLCSMVDVCMPKLTKKHQTVQGYIRKMLKDAAAGKG
>NC_015565.1|WP_013809682.1|581505_582390_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MANPIEKRYEFVLFFDVENGNPNGDPDAGNLPRIDPETSLGIVTDVCLKRKVRNYVDIAKRDKEGNTLPGYDIYVRESHALNAQHRKAYSFIGREPEPKKLPKDVAEAEKVIRFMCNNFFDIRTFGAVMTTEVNCGQVRGPVQFNFARSIDPIVQQEITITRMAVTNEKDLEKKDREMGRKYIVPYALYRVEGYISAYLAQKTGFSEDDLNLLWEALINMFEHDHSAARGKMASRKLFVFEHETALGNAPAHKLFELIKVEKVDSSKPARSFHDYVIRFDSSKIPQGVRCEEKL
>NC_015565.1|WP_013809681.1|579711_581490_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MIINALYECYERLLTDPGSGVSPPGYSKAKVSYALNISHKGELLNVIDLRVMKGKKLSSRDIDVPEQVKRASGIAPNFLCDNCVYVLGIGYIGKEKDSKWIMKRFEAFRRRQHEILDGVDDIGAQALLRFLDDWDPTKAVEHPLLREHLDGLADGGNIVFMLKGEHGYLHERPALRAAWEYHRSNSDSDRIGQCLVTGKRAPLARLHPSIKGVTGAQPSGASLVSFNLNAFTSYGKEQSYNSPVAVEAAFAYTTALNYLLASGRHRLRIGDTTTVFWAERIGSGIEEDFFAELFDPAWDTGKRDNKDDKPKRDPKTTGLVRDVLTRIREHKPVRDVMKEVDPDARFYILGLAPNASRLSVRFWHVDTFGSLTEKIGRHYSDMAIEKNWDTDPDFIPLWQILKETAPLGDMERVSPLLAGALTRAILLGLPYPQSLFTAMLSRVRADQTVNYVRAAVVKACLIRNYKHLDESKKEVVESMSLKEDNLNLPYRLGRLFALLEKVQQDANPGINATIRDRYFGAASATPRAVFPLLLRLSQHHISKAEYGFVTDKKIEEIMIGIDNFPSHLNLEEQGLFVLGYYHQRNALYKKSN
>NC_015565.1|WP_013809680.1|579058_579715_+|type-I-C-CRISPR-associated-protein-Cas5
MGYGIKLKVWGDYACFSRPEMKVERVSYDVMTPSAARGILEAIHWKPAIRWVVDRIHILNAFKFENIRRNEVGTKIPAGTVKTAMKGQPVMLCQYASNERQQRATLLLKDVAYVIEAHFEMTDKAGPTDTEEKHYNMFLRRARTGQCFHRPYLGCREFPAHFELLEGENPISVHRGEKDLGWMLLDIDYKNNMEPHFFRAVMQDGVVTVPPLKGGGSL
>NC_015565.1|WP_013809679.1|576845_579032_+|CRISPR-associated-helicase/endonuclease-Cas3
MEYYAHSDGTKNKKFWQKLRNHLEAVADLAGKFGEKFGSKEPAFVAGLLHDIGKYSAEFQARLEGAAKRVDHSTFGAQEILSLYKKPIGYLLAYVIAGHHSGLPDGGSVADDSSLEGRLKKTGLPNCSGWTKEIASIPDSSRLRPNLRPINGQLGFCLSFYIRMLYSCLVDADFLDTERFIAAETFNRRGGWPTLSELMAHLDQYLDTMSAAAPDTPVNCLRKDILAHCREKANNQPGFFTLTVPTGGGKTLSSLAFALRHAVRHGLERIIYVIPYTSIIEQTADVFRSALGREAVLEHHSNFQYNREDDEDWQEISEKLKLSAENWDAPIIVTTNVQFFESLFANRSSKCRKLHNLARSVIILDEAQMLPTDYLKPCLAALIELVTNYSASVILCTATQPALNRLMPESICFKEIASDIDKLYEAFRRVKVSFIGEKTDAAVVEQLSRHEQVLCIVNTRRHARMLYEQLKSVGDVYHLSARMCPVHRTEKLKEIREILANGKPCRLVSTQLIEAGVNIDFPVVYRAAAGIDSVAQAAGRCNREGRLRTGHVFVFKPEKHGLPGGWFSRTAEIAGMVMREFDDPMSLAAVRRYFEYLFDIDREELDKQRILQLFRENEKHLLFPFTEVANKFKLIDSKTVSIIIPWDKEAKELIRELQFTNYPAGMARRFQPYTVQVYTYEFAELLRTRAIRTVAGMYHILDDSRYYDEQVGLLTPESTVLPEEVLIF
>NC_015565.1|WP_013809678.1|575429_576377_+|L-lactate-dehydrogenase
MVEKKKGVKIAIVGVGLVGASAAFAIMISGMASQLVLVDVNKDKAEGEAMDLGDAAAFIKPINVMYGTYADCQGADIVVFTAGANQKPGETRLDLVQKNIAILKESLPQLLKYCSESIILMVSNPVDVLTYAALKISGLPASQVFGSGTVLDTSRFKAELAEYCQVDPRNVHAYIVGEHGDSEVALWSTATVAGIDIEQYCQQRGLAPIDRQLVAERVRTAAYEIIKRKGATYYAVALSIKRICEAILRNENSILTVSGLVNNLYGIEHCCLSLPTIVNGTGRSKVIALPMTVREEEALRNSAQVLKEIIKQVGF
>NC_015565.1|WP_013809677.1|574292_575135_-|LysM-peptidoglycan-binding-domain-containing-protein
MNLSVRFKRTLASLCLLGTLLPGAIAYASGYTVVPGDSLYSISQKFHVTVNDIRSANGVKGDLIYPGQVLNIPDGKATSSPAVPVNAQTHQNSSFYVVKPGDSLYLIAQKYNTTVEALMAVNNLQSSLIVPGQQLNVPVAAYRPVAPVTEVSRSARRPEIPFSDADLDLLARLVTAEAGGEPKAAQVGVAAVVVNRVKSSLFPNSIREVIYAPNQFTPVSNGWINRPATAQAVEAAREALYGADPTNGALYFFDTSAKSSFLHSLPVSARYGKMIYAKAI
>NC_015565.1|WP_003541527.1|573562_574252_+|endonuclease
MQTIKVVSYNIRYARGMDDQVNLNRVAAVLAWSGAQLMGLQEVDKHLPRSGFRHQAKHLGWLLHRHWVFAPNVKWGPWAQYGNAVLSYWPIIEHKHYPLPSKGEPRGLLEVEVNINNRAVAFFCTHLGLSREERLEQVEIILKVMTAANKPSILVGDFNDDRDSQEFNLISRLLQDATAITGGFETFPADNEQLDFVFVSHHWQVLAARPIISRASDHLPVLVELSLNN
>NC_015565.1|WP_013809686.1|587315_588905_+|IS21-family-transposase
MIKLIQKQNILIMYYREGKSQREIARLLGVDRKTVRRYINKYEEKRKELEQSSGLVDPGELIQEIVEPPKYTVGNRPKRKVTEDIQSLIKKHLDENEQKRRNGQHKQVKKIIDIYEALVEDNIDISYSSVKRIVRSLEQKAKEAFIKESYIPGDVCEFDWGEVKLTIGGKLQILQMAAFTSAYGNYRYAYLFTKQKTECFQEAHARFFQEVGGVYQTLVYDNMKVAVKRFVGTEKEPTEGLLQLSIYYGFRYRFCNVRRGNEKGHVERSVDVIRRKAFAFKDTFESLDEANNYLLKICNKLNAKPQDTRDGQSALACLEQERANLLTLSPMFDSARVVNARVDKYATIVVDQNHYSVPDHLVGELVMVKIYSSRICCFYKDAKIAEHARLTGCHEWRLELSHYLETLKKKPGALAGSMALQQADQKIKQIFETYYTKKEKEFIELMQYIKDGTSLSDVEKSITELCKIHPSHVTTDKIKALCAKRRENTPEIAIISQVAQDITDQAIQHLKMYDKLFNTQNLEPKEAIA
>NC_015565.1|WP_013809687.1|588901_589681_+|ATPase-AAA
MSAATRKEWKEAIIEYSKELKLPAIRKYLEEYVQEACQRDACYEEFLAQLLQKECDARREASRNNRIRLAQFTHKKYLEDLSIKDLPEDAQKKLKILKTLDFLREGRNVILAGSPGTGKTHVAIGLGIKACMEGYKVWFTTVPLLINRIKECRAEQTLRAFQNRFEKYDLVIADEMGYISFDKEGSELLFTHLSLRAGRKSTIITTNLSFERWGEIFQDPVMTAAMIDRLTHQSYIINMNGNSYRMKETKEWLQKQQLA
>NC_015565.1|WP_013809688.1|592764_593283_+|hypothetical-protein
MLLAGSIAGVALADSNTESTPDQSKDQFYQEFISDFAANLGVSADQVTAALEATKKQMVQEAVQQGKITQTQADEILAQKGFGFGFGMGDHRQNRGDITQNAGFLNDAAGVLGISADELKSELQSGKKLDQIINDHGMTMDQFRQKMPKPQRPLMNDKGVNNTDASAGTTSN
>NC_015565.1|WP_013809689.1|593436_593940_+|hypothetical-protein
MKNIVKKFFLLIGTTVIIASLVTGCGSTNSQSNISSDQKQEQKTIDTSSTQSDQKQNAGDTGSNQSGQDQNQKTGNINKPSGPPKGGPDRDPTQDTAFLQDAASVLGITVDQLKSELQSGKKLDQIVTEKGMTMEQFHQKMPKPQQPPVKDNAVAKKGATAGNTTAN
>NC_015565.1|WP_013809690.1|594426_596514_+|glycosyltransferase-family-39-protein
MGSKQGQRFDIILICIALLAAFLNIFNIWKNQYANAYYTSAITNMLQNWHNFFYASFDPAGYVTVDKPPVAFWVQTIFAKIFGVHGWSVILPQALAGVGSVLLMYVLVKPTFGKTAARLASLIMACTPIAVAVSRTNNIDSLLVFTLLLATWMLFRGTRNQKLSWILGAFAMIGVGFNMKMLQAYMVVPAFYLFYLLAFKGRWKRKLAVLGVSAVILVGVSLSWAVVVDSIPKENRPYIGSSQTNSVLELALGYNGISRLTGMNRGGPGGPPNQRQMDQDGNNMPGPQQMQQDGNNMREGFGPDGNGRKGPMPGGGGPPGRGGGGMFGTGQAGPLRLFQTELSGQASWLLPFVAFACVGLLAGIRRKNQLTDKENETLFWLAWLLPAMAFFSVAGFFHHYYLIMLAPPIAALAGAGWVELWNQYRNQEDWQMWLLPSGLLATTAFELYVLQPFQKQIGMGWSIGIGTAGIGLSLVLFLAAKKQKLYSTAAMAGMLVLLVAPLYWAATPLLYGDNSMLPQAGPSQPGGSGQPGGPNQQYQQDRPNQPDVSNQQGFGQRKGMGRGPDSGINAKLLAYVTKNNTGETYLFATTDSHGAAPYIIETGKAVMAMGGFSGSDPILTVEKIKKLVANKEVKYFLIPSSGSGRGGGSNSAVLEWIRANSTEVPKEEWQGNTTQGGPMGMRNDETLYKINDITK
>NC_015565.1|WP_013809691.1|599350_601102_+|hydantoinase-B/oxoprolinase-family-protein
MSQSINQPIDAFTLDIVKDSLIAIGEEMFYALARTSMSPIIYEVLDYASGLTDVNGQLLTQGNGATGFIGLLTFMVKETINKYGKDGLKPGDIIIINDPYVGGGSHLSDVGLVLPIFYNGELVAFSANKAHWTEVGGKDPGSWTTDSTEIFQEGLQFPCIKIFEEGKLNQALVDLIAANVRFPDLSLGDMWAQIAALRTGEKRFIELCDKYGKDVVMASIDRLLEHGEQMTRKQLAQLPKGTFEAVDYIDDDGVGNGPLKVQVKVTITDEKFICDFRGSHPQVLGPVNCSYAALVSAVRIIFMAITNPSQDVNDGIFRPLEVIADRGSIFACERPAAVSTYWETMIYGADLIWKALAPVLPHRLTAGHLLSVCAIIVSGMHPDTNEPFLIVEPSVGGWGAGQGKDGEPGQFCIGDGETFNVPVEVAETRYGIMVDEYSFRADGAGAGEFRGGSGCIRTYRALTDNQFVTATFGRHKYLPWGFNGGKDGSENSFSIIKANGEIDGPFGKYARYPLNKNDVVRLVTATGGGYGDPFKRPAEKVVMDVKNEFITLEQARNDYGVIINPETLAVEGFTEERLQKERN
>NC_015565.1|WP_013809692.1|601103_601439_+|cupin-domain-containing-protein
MEIVTIKDVEADKSSDVIMKTLFDENIIKDGRTKFGTVVIPPGVRVPQEGAGSHGADEYSIVLKGSIVTMSGGKEYRVTGGQATFIPAGEAHWCLNDGKEDCEIVWVLVNR
>NC_015565.1|WP_013809693.1|601508_602615_+|aminopeptidase-P-family-protein
MKVQEQRFMKAQGLLAARQLDAVVVTSPPNFFYFSGIWLDSNERLQAVVIPKTGTPKIIVHEMFREEVSGVKEFEQLFWSDGIPPIELLAKVLPAAGTVSVDNQWPSGNLISLMEVNKQLSYVHSTPILGALRLIKDDAEIKLLEESANYADQIMDRVIEFVKPGVTELEVAEEIKKLFRKEGINQLSFEPIVATGSNAAMPHHVPDDTVLREGDTVVIDMGGIKDYYCSDITRTIVLGEATPEIEKVYQVVQRAQEAAVKAIKPGLAMQDIDQVARGIITEAGYGEYFTHRTGHGLGIEVHEEPYLSPGNRQILKEGMVVSVEPGIYLPGKFGVRIEDIVVVTADGAERMNHYPRHLICRETTDARK
>NC_015565.1|WP_013809694.1|602635_603985_+|permease
MEENVLNKSIEKDEALSAIPLSERQHWLTPAMIFGGLEFTIPVLMVGAMLTASFGLTSIFWILAIALFVFQWVGNAICGYIGAKTGLSSSVIARTGFGSTQAKVIVALTIFVVSACWWALQTAVASNAISAMVGIDYKTQWFTWAIVTVVIGLIFALPSIIGYSSMKWTDYLAVPSGLLLIVAGIYLSLKNTGWETIVSWSPKPTMTFLAAVSLIIGVNVSQWVISADYTRYAKPNVKDNILIPLGIIGVVFPLFYVGAIMSVGVGSADIVQVMVKLGFPFWGFLILWLATWTSQLVNNYSMGLALANLLNVNSGKGRALLTFLGTLLAIGIALAGILDYFMDFLYMTALIYPAIAGVIFVDFFFLRNQQWVDNPGWNWMATIALVVGTLFGYYTQYVNPFGLPAVQSLIVTGVTYYVCMRMKARIVPDRFTPDQWKESGYSAGSSESV
>NC_015565.1|WP_003541497.1|604133_604763_+|DUF502-domain-containing-protein
MKKLSIYFVKGLLVLLPLLGTFYILAFIYSKIAGIGNAILFPLVGRELPGIDFVFVVAAVCLVGLIANWWISKKILALIEDFIYKMPGVKNIYTTIKDALKSLVGDKKKFDTVVLVSLNDRAYRLGFLTVKEALFKDESGRELVGVYFPQTLQVAGDLYWVPKESVTVVDMPVDQALKLIISGGASGTEVKDRQSQWQVVKKKGKKLAL

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Crispr_ID: NC_015565_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015565_2

589883-592441

TypeI

I-C

Consensus_repeat	Method
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CRT

38 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_015565_2

>merge|NC_015565|2|589883-592441|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCCCCACACGGGCGCGTGGATTGAAACATGGAAGTTGCTATCGATTATGGTCATCTTTTCCGTCGCGCCCCACACGGGCGCGTGGATTGAAACAAAAAGAAAAAAACTGCCATTGGACGGCATGGATGAGTCGCGCCCCACACGGGCGCGTGGATTGAAACCACAATCGTTGCAATAAACACCAGCGCCGTGTATAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTCCTCCTGTTCCGCTTGCTCGTGATATTCATGGTAGTCGCGCCCCACACGGGCGCGTGGATTGAAACCCTAGTAGCGGCTGGATAAGTTTACCTATAGATTGTCGCGCCCCACACGGGCGCGTGGATTGAAACAAATTTTATCACGAAAGTGAGGCAATTTCAATGAAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTTTGAGCAGGCCAGACTTTCCACGGTTGAGATTGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTCCCGGTTATTTAAAGTAAGTCTTTGAAATAGTGGTCGCGCCCCACACGGGCGCGTGGATTGAAACCCAAAAATATCTCCGCTTCTCAATCTCTGTCAGCGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTCGCAAATGTGAGCGTCATAAAAATGGGAGGATAGTCGCGCCCCACACGGGCGCGTGGATTGAAACCGGGTGTATTTTAATAAATTTACCCTGCACTGGCGTCGCGCCCCACACGGGCGCGTGGATTGAAACATGTCAAGCGAGCACCGAAAGGTGCTCGCAGCTGCCGTCGCGCCCCACACGGGCGCGTGGATTGAAACAACGTGAGAAATGCAGAAATAAGCAAAGCAGGGGAGTCGCGCCCCACACGGGCGCGTGGATTGAAACCAAAATTCCAGGGAGAACACCGCCTTTCTCATTGGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTTATACGATACTATGTTGCAGCTTGAATCTTTGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTCATGTGAAACATTTTTTCTCCCGGCCGGGCCGGGGTCGCGCCCCACACGGGCGCGTGGATTGAAACATATCGTAGACTTTGGTTTTGCAGTTTGGGCACGTCGCGCCCCACACGGGCGCGTGGATTGAAACGTGATAAACTTCCGCACAATTGCTCAATCCTCCCGTCGCGCCCCACACGGGCGCGTGGATTGAAACTCCTTTATATGCTTGTCCAAGTTTTGCATAGCTTGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTGTATCGGCGACCTGTGTATGGGCCGTGGCCTGGGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGCTGATACTCCTGCAGATGTACCCTCTGACGTAAGTCGCGCCCCACACGGGCGCGTGGATTGAAACAACGTGACCGACTGGGTGGCCGAGGAAGACCAAGAGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGGCGGCTAATGCGTAAATATCGGGCCACATCCGTCGCGCCCCACACGGGCGCGTGGATTGAAACCAAACCATCCCCGGCATAATGAACCAGCCGCCGTCCGTCGCGCCCCACACGGGCGCGTGGATTGAAACTTGGAGTGTCAGTGCCTCAACAGGGAATAGGCTTGTCGCGCCCCACACGGGCGCGTGGATTGAAACTCAATGCCCACGGTTTTTGCCACGCCGCCAACGGGTCGCGCCCCACACGGGCGCGTGGATTGAAACGCCTTGGGTTTGCTGTTAAAGGCGCAATAGATTTGTCGCGCCCCACACGGGCGCGTGGATTGAAACATTAATAAATAAAAATTAATTAGTTTTAAAAAAACGTCGCGCCCCACACGGGCGCGTGGATTGAAACATCCGGGAGAACCGCCATGATTTTGCGCTCCTTGGGTCGCGCCCCACACGGGCGCGTGGATTGAAACCCGGCCGCGCAGTGGTTCCACGGATGCCCAGACCGTCGCGCCCCACACGGGCGCGTGGATTGAAACGCCTGACTACTGAGCTAGACAACAATTCTAGGCAGGTCGCGCCCCACACGGGCGCGTGGATTGAAACTGGACAGACGAAAAACTCGGAACATGCACAAGGGATGTCGCGCCCCACACGGGCGCGTGGATTGAAACACGCCCAATTTGATTTAACATATCGTTCTTTTGATGTCGCGCCCCACGCGGGCGTGTGGATTGAAACATAAACGGAAAGACAGGAAAAATAACGCTAAATACGTCGCGCCCCACGCGGGCGTGTGGATTGAAACTTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTGGTCGTGCCCCACGCGGGCGTGTGGATTGAAACTCCGCCGGGGTTAGTGCCCGTCCTTTCCTCCTGGTCGCGCCCCACGCGGGCGTGTGGATTGAAACTTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTGGTCGCGCCCCACGCGGGCGTGTGGATTGAAACATGAAAAAACAAAACCGCCTTACGGCGGTCTAAGTCGCGCCCCACGCGGGCGTGTGGATTGAAAC

>NC_015565|2|2|589883-592441|PILER-CR
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATGGAAGTTGCTATCGATTATGGTCATCTTTTCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAAAAGAAAAAAACTGCCATTGGACGGCATGGATGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CACAATCGTTGCAATAAACACCAGCGCCGTGTATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCCTCCTGTTCCGCTTGCTCGTGATATTCATGGTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCTAGTAGCGGCTGGATAAGTTTACCTATAGATT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAATTTTATCACGAAAGTGAGGCAATTTCAATGAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTTGAGCAGGCCAGACTTTCCACGGTTGAGATT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTCCCGGTTATTTAAAGTAAGTCTTTGAAATAGTG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAAAAATATCTCCGCTTCTCAATCTCTGTCAGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTCGCAAATGTGAGCGTCATAAAAATGGGAGGATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CGGGTGTATTTTAATAAATTTACCCTGCACTGGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATGTCAAGCGAGCACCGAAAGGTGCTCGCAGCTGCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AACGTGAGAAATGCAGAAATAAGCAAAGCAGGGGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CAAAATTCCAGGGAGAACACCGCCTTTCTCATTG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTATACGATACTATGTTGCAGCTTGAATCTTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTCATGTGAAACATTTTTTCTCCCGGCCGGGCCGGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATATCGTAGACTTTGGTTTTGCAGTTTGGGCAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	GTGATAAACTTCCGCACAATTGCTCAATCCTCCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCCTTTATATGCTTGTCCAAGTTTTGCATAGCTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTGTATCGGCGACCTGTGTATGGGCCGTGGCCTGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGCTGATACTCCTGCAGATGTACCCTCTGACGTAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AACGTGACCGACTGGGTGGCCGAGGAAGACCAAGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGCGGCTAATGCGTAAATATCGGGCCACATCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CAAACCATCCCCGGCATAATGAACCAGCCGCCGTCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTGGAGTGTCAGTGCCTCAACAGGGAATAGGCTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCAATGCCCACGGTTTTTGCCACGCCGCCAACGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	GCCTTGGGTTTGCTGTTAAAGGCGCAATAGATTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATTAATAAATAAAAATTAATTAGTTTTAAAAAAAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATCCGGGAGAACCGCCATGATTTTGCGCTCCTTGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCGGCCGCGCAGTGGTTCCACGGATGCCCAGACC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	GCCTGACTACTGAGCTAGACAACAATTCTAGGCAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGACAGACGAAAAACTCGGAACATGCACAAGGGAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ACGCCCAATTTGATTTAACATATCGTTCTTTTGAT
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	ATAAACGGAAAGACAGGAAAAATAACGCTAAATAC
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG
GTCGTGCCCCACGCGGGCGTGTGGATTGAAAC	TCCGCCGGGGTTAGTGCCCGTCCTTTCCTCCTG
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	ATGAAAAAACAAAACCGCCTTACGGCGGTCTAA
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC

>NC_015565|2|2|589883-592441|CRISPRCasFinder
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATGGAAGTTGCTATCGATTATGGTCATCTTTTCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAAAAGAAAAAAACTGCCATTGGACGGCATGGATGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CACAATCGTTGCAATAAACACCAGCGCCGTGTATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCCTCCTGTTCCGCTTGCTCGTGATATTCATGGTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCTAGTAGCGGCTGGATAAGTTTACCTATAGATT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAATTTTATCACGAAAGTGAGGCAATTTCAATGAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTTGAGCAGGCCAGACTTTCCACGGTTGAGATT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTCCCGGTTATTTAAAGTAAGTCTTTGAAATAGTG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAAAAATATCTCCGCTTCTCAATCTCTGTCAGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTCGCAAATGTGAGCGTCATAAAAATGGGAGGATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CGGGTGTATTTTAATAAATTTACCCTGCACTGGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATGTCAAGCGAGCACCGAAAGGTGCTCGCAGCTGCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AACGTGAGAAATGCAGAAATAAGCAAAGCAGGGGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CAAAATTCCAGGGAGAACACCGCCTTTCTCATTG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTATACGATACTATGTTGCAGCTTGAATCTTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTCATGTGAAACATTTTTTCTCCCGGCCGGGCCGGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATATCGTAGACTTTGGTTTTGCAGTTTGGGCAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	GTGATAAACTTCCGCACAATTGCTCAATCCTCCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCCTTTATATGCTTGTCCAAGTTTTGCATAGCTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTGTATCGGCGACCTGTGTATGGGCCGTGGCCTGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGCTGATACTCCTGCAGATGTACCCTCTGACGTAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AACGTGACCGACTGGGTGGCCGAGGAAGACCAAGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGCGGCTAATGCGTAAATATCGGGCCACATCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CAAACCATCCCCGGCATAATGAACCAGCCGCCGTCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTGGAGTGTCAGTGCCTCAACAGGGAATAGGCTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCAATGCCCACGGTTTTTGCCACGCCGCCAACGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	GCCTTGGGTTTGCTGTTAAAGGCGCAATAGATTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATTAATAAATAAAAATTAATTAGTTTTAAAAAAAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATCCGGGAGAACCGCCATGATTTTGCGCTCCTTGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCGGCCGCGCAGTGGTTCCACGGATGCCCAGACC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	GCCTGACTACTGAGCTAGACAACAATTCTAGGCAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGACAGACGAAAAACTCGGAACATGCACAAGGGAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ACGCCCAATTTGATTTAACATATCGTTCTTTTGAT
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	ATAAACGGAAAGACAGGAAAAATAACGCTAAATAC
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG
GTCGTGCCCCACGCGGGCGTGTGGATTGAAAC	TCCGCCGGGGTTAGTGCCCGTCCTTTCCTCCTG
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	ATGAAAAAACAAAACCGCCTTACGGCGGTCTAA
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC

>NC_015565|2|2|589883-592441|CRT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATGGAAGTTGCTATCGATTATGGTCATCTTTTCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAAAAGAAAAAAACTGCCATTGGACGGCATGGATGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CACAATCGTTGCAATAAACACCAGCGCCGTGTATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCCTCCTGTTCCGCTTGCTCGTGATATTCATGGTA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCTAGTAGCGGCTGGATAAGTTTACCTATAGATT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AAATTTTATCACGAAAGTGAGGCAATTTCAATGAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTTGAGCAGGCCAGACTTTCCACGGTTGAGATT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTCCCGGTTATTTAAAGTAAGTCTTTGAAATAGTG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCAAAAATATCTCCGCTTCTCAATCTCTGTCAGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTCGCAAATGTGAGCGTCATAAAAATGGGAGGATA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CGGGTGTATTTTAATAAATTTACCCTGCACTGGC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATGTCAAGCGAGCACCGAAAGGTGCTCGCAGCTGCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AACGTGAGAAATGCAGAAATAAGCAAAGCAGGGGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CAAAATTCCAGGGAGAACACCGCCTTTCTCATTG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTTATACGATACTATGTTGCAGCTTGAATCTTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTCATGTGAAACATTTTTTCTCCCGGCCGGGCCGGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATATCGTAGACTTTGGTTTTGCAGTTTGGGCAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	GTGATAAACTTCCGCACAATTGCTCAATCCTCCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCCTTTATATGCTTGTCCAAGTTTTGCATAGCTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTGTATCGGCGACCTGTGTATGGGCCGTGGCCTGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGCTGATACTCCTGCAGATGTACCCTCTGACGTAA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	AACGTGACCGACTGGGTGGCCGAGGAAGACCAAGA
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGCGGCTAATGCGTAAATATCGGGCCACATCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CAAACCATCCCCGGCATAATGAACCAGCCGCCGTCC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TTGGAGTGTCAGTGCCTCAACAGGGAATAGGCTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TCAATGCCCACGGTTTTTGCCACGCCGCCAACGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	GCCTTGGGTTTGCTGTTAAAGGCGCAATAGATTT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATTAATAAATAAAAATTAATTAGTTTTAAAAAAAC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ATCCGGGAGAACCGCCATGATTTTGCGCTCCTTGG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	CCGGCCGCGCAGTGGTTCCACGGATGCCCAGACC
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	GCCTGACTACTGAGCTAGACAACAATTCTAGGCAG
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	TGGACAGACGAAAAACTCGGAACATGCACAAGGGAT
GTCGCGCCCCACACGGGCGCGTGGATTGAAAC	ACGCCCAATTTGATTTAACATATCGTTCTTTTGAT
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	ATAAACGGAAAGACAGGAAAAATAACGCTAAATAC
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG
GTCGTGCCCCACGCGGGCGTGTGGATTGAAAC	TCCGCCGGGGTTAGTGCCCGTCCTTTCCTCCTG
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	TTAGAAAGCAAAAAGATAGTTGTTAAACCGTGTG
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC	ATGAAAAAACAAAACCGCCTTACGGCGGTCTAA
GTCGCGCCCCACGCGGGCGTGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015565.1\|WP_003541495.1\|604817_605309_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341358
NC_015565.1\|WP_013809678.1\|575429_576377_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133428
NC_015565.1\|WP_013809681.1\|579711_581490_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_015565.1\|WP_013809691.1\|599350_601102_+\|hydantoinase-B/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|376810
NC_015565.1\|WP_013809682.1\|581505_582390_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_015565.1\|WP_013809689.1\|593436_593940_+\|hypothetical-protein	unknown	unknown	unknown
NC_015565.1\|WP_013809684.1\|583100_584132_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_015565.1\|WP_003541497.1\|604133_604763_+\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
NC_015565.1\|WP_013809687.1\|588901_589681_+\|ATPase-AAA	unknown	unknown	gnl\|CDD\|180607
NC_015565.1\|WP_013809693.1\|601508_602615_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238525
NC_015565.1\|WP_013809690.1\|594426_596514_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NC_015565.1\|WP_013809683.1\|582409_583096_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|187768
NC_015565.1\|WP_013809679.1\|576845_579032_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015565.1\|WP_013809692.1\|601103_601439_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571
NC_015565.1\|WP_013809686.1\|587315_588905_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_015565.1\|WP_013809680.1\|579058_579715_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_015565.1\|WP_013809694.1\|602635_603985_+\|permease	unknown	unknown	gnl\|CDD\|271377
NC_015565.1\|WP_013809688.1\|592764_593283_+\|hypothetical-protein	unknown	unknown	unknown
NC_015565.1\|WP_013809685.1\|584146_584437_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015565.1\|WP_003541493.1\|605330_606677_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114

Protein	Function_ID	Function_description	E-value
NC_015565.1\|WP_003541495.1\|604817_605309_-\|CBS-domain-containing-protein	gnl\|CDD\|341358	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	9.92728e-09
NC_015565.1\|WP_013809678.1\|575429_576377_+\|L-lactate-dehydrogenase	gnl\|CDD\|133428	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NC_015565.1\|WP_013809681.1\|579711_581490_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_015565.1\|WP_013809691.1\|599350_601102_+\|hydantoinase-B/oxoprolinase-family-protein	gnl\|CDD\|376810	pfam02538, Hydantoinase_B, Hydantoinase B/oxoprolinase. This family includes N-methylhydaintoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase EC:3.5.2.9 which catalyzes the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to pfam01968.	0
NC_015565.1\|WP_013809682.1\|581505_582390_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.1796e-156
NC_015565.1\|WP_013809684.1\|583100_584132_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_015565.1\|WP_003541497.1\|604133_604763_+\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	7.27881e-27
NC_015565.1\|WP_013809687.1\|588901_589681_+\|ATPase-AAA	gnl\|CDD\|180607	PRK06526, PRK06526, transposase; Provisional.	1.68955e-66
NC_015565.1\|WP_013809693.1\|601508_602615_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238525	cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.	4.66353e-117
NC_015565.1\|WP_013809690.1\|594426_596514_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	1.19749e-43
NC_015565.1\|WP_013809683.1\|582409_583096_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	2.0903e-30
NC_015565.1\|WP_013809679.1\|576845_579032_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	7.33665e-59
NC_015565.1\|WP_013809692.1\|601103_601439_+\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	7.71765e-11
NC_015565.1\|WP_013809686.1\|587315_588905_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.82149e-10
NC_015565.1\|WP_013809680.1\|579058_579715_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.99929e-116
NC_015565.1\|WP_013809694.1\|602635_603985_+\|permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	6.89979e-53
NC_015565.1\|WP_013809685.1\|584146_584437_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.53086e-33
NC_015565.1\|WP_003541493.1\|605330_606677_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0

>NC_015565.1|WP_013809687.1|588901_589681_+|ATPase-AAA
MSAATRKEWKEAIIEYSKELKLPAIRKYLEEYVQEACQRDACYEEFLAQLLQKECDARREASRNNRIRLAQFTHKKYLEDLSIKDLPEDAQKKLKILKTLDFLREGRNVILAGSPGTGKTHVAIGLGIKACMEGYKVWFTTVPLLINRIKECRAEQTLRAFQNRFEKYDLVIADEMGYISFDKEGSELLFTHLSLRAGRKSTIITTNLSFERWGEIFQDPVMTAAMIDRLTHQSYIINMNGNSYRMKETKEWLQKQQLA
>NC_015565.1|WP_013809686.1|587315_588905_+|IS21-family-transposase
MIKLIQKQNILIMYYREGKSQREIARLLGVDRKTVRRYINKYEEKRKELEQSSGLVDPGELIQEIVEPPKYTVGNRPKRKVTEDIQSLIKKHLDENEQKRRNGQHKQVKKIIDIYEALVEDNIDISYSSVKRIVRSLEQKAKEAFIKESYIPGDVCEFDWGEVKLTIGGKLQILQMAAFTSAYGNYRYAYLFTKQKTECFQEAHARFFQEVGGVYQTLVYDNMKVAVKRFVGTEKEPTEGLLQLSIYYGFRYRFCNVRRGNEKGHVERSVDVIRRKAFAFKDTFESLDEANNYLLKICNKLNAKPQDTRDGQSALACLEQERANLLTLSPMFDSARVVNARVDKYATIVVDQNHYSVPDHLVGELVMVKIYSSRICCFYKDAKIAEHARLTGCHEWRLELSHYLETLKKKPGALAGSMALQQADQKIKQIFETYYTKKEKEFIELMQYIKDGTSLSDVEKSITELCKIHPSHVTTDKIKALCAKRRENTPEIAIISQVAQDITDQAIQHLKMYDKLFNTQNLEPKEAIA
>NC_015565.1|WP_013809685.1|584146_584437_+|CRISPR-associated-endonuclease-Cas2
MMVLITYDVDTTTPEGRRRLRKVAKECVNYGQRVQKSVFECLLDPAQYADLKHRLNKMIDLNTDSLRFYLLGSNWKKRVEHIGTNESYDPEGVLLV
>NC_015565.1|WP_013809684.1|583100_584132_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVMTPDAYLAKEGENVLIRVQEEVKFRIPVHNLEGIVCFGYIGASPAVMALCAERNVALSFLTENGHFLARVTGPVSGNVLLRRKQYRMSDDPVECSKLACAFILGKTANCRTVLQRALRDHSETIQREQVEKAVVSLGTRIEKISRCNSLEILRGLEGEAARIYFSVFDHLILAQKDAFYFCERNRRPPLDNMNALLSFLYTLLMHDVQSALETVGLDPAVGFLHRDRPGRPGLALDLMEELRPFLADRLALSLINRKQIDAKGFIEKESGGIIMKEETRKIVLTAWQKRKQEEIKHPFLNEKIAVGLVPYAQALLLARYLRGDLDGYPVFFWK
>NC_015565.1|WP_013809683.1|582409_583096_+|CRISPR-associated-protein-Cas4
MDEDKFLPLSGIQHFAFCKRQWALIHIERLWSENILTIEGRHLHERVDNPFDIEKRGDLIVARSVPVVSRSLGLYGVVDVVEFHSVQKEQGEIGITLPGRAGHWLPRPVEYKRGRPKKDDRDIVQLCAQAICLEDMLAVPIEYGDIFYGEIRRRQRVLFDAAMRQRVANLALSMHELFEKGTTPPAESGPNCRLCSMVDVCMPKLTKKHQTVQGYIRKMLKDAAAGKG
>NC_015565.1|WP_013809682.1|581505_582390_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MANPIEKRYEFVLFFDVENGNPNGDPDAGNLPRIDPETSLGIVTDVCLKRKVRNYVDIAKRDKEGNTLPGYDIYVRESHALNAQHRKAYSFIGREPEPKKLPKDVAEAEKVIRFMCNNFFDIRTFGAVMTTEVNCGQVRGPVQFNFARSIDPIVQQEITITRMAVTNEKDLEKKDREMGRKYIVPYALYRVEGYISAYLAQKTGFSEDDLNLLWEALINMFEHDHSAARGKMASRKLFVFEHETALGNAPAHKLFELIKVEKVDSSKPARSFHDYVIRFDSSKIPQGVRCEEKL
>NC_015565.1|WP_013809681.1|579711_581490_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MIINALYECYERLLTDPGSGVSPPGYSKAKVSYALNISHKGELLNVIDLRVMKGKKLSSRDIDVPEQVKRASGIAPNFLCDNCVYVLGIGYIGKEKDSKWIMKRFEAFRRRQHEILDGVDDIGAQALLRFLDDWDPTKAVEHPLLREHLDGLADGGNIVFMLKGEHGYLHERPALRAAWEYHRSNSDSDRIGQCLVTGKRAPLARLHPSIKGVTGAQPSGASLVSFNLNAFTSYGKEQSYNSPVAVEAAFAYTTALNYLLASGRHRLRIGDTTTVFWAERIGSGIEEDFFAELFDPAWDTGKRDNKDDKPKRDPKTTGLVRDVLTRIREHKPVRDVMKEVDPDARFYILGLAPNASRLSVRFWHVDTFGSLTEKIGRHYSDMAIEKNWDTDPDFIPLWQILKETAPLGDMERVSPLLAGALTRAILLGLPYPQSLFTAMLSRVRADQTVNYVRAAVVKACLIRNYKHLDESKKEVVESMSLKEDNLNLPYRLGRLFALLEKVQQDANPGINATIRDRYFGAASATPRAVFPLLLRLSQHHISKAEYGFVTDKKIEEIMIGIDNFPSHLNLEEQGLFVLGYYHQRNALYKKSN
>NC_015565.1|WP_013809680.1|579058_579715_+|type-I-C-CRISPR-associated-protein-Cas5
MGYGIKLKVWGDYACFSRPEMKVERVSYDVMTPSAARGILEAIHWKPAIRWVVDRIHILNAFKFENIRRNEVGTKIPAGTVKTAMKGQPVMLCQYASNERQQRATLLLKDVAYVIEAHFEMTDKAGPTDTEEKHYNMFLRRARTGQCFHRPYLGCREFPAHFELLEGENPISVHRGEKDLGWMLLDIDYKNNMEPHFFRAVMQDGVVTVPPLKGGGSL
>NC_015565.1|WP_013809679.1|576845_579032_+|CRISPR-associated-helicase/endonuclease-Cas3
MEYYAHSDGTKNKKFWQKLRNHLEAVADLAGKFGEKFGSKEPAFVAGLLHDIGKYSAEFQARLEGAAKRVDHSTFGAQEILSLYKKPIGYLLAYVIAGHHSGLPDGGSVADDSSLEGRLKKTGLPNCSGWTKEIASIPDSSRLRPNLRPINGQLGFCLSFYIRMLYSCLVDADFLDTERFIAAETFNRRGGWPTLSELMAHLDQYLDTMSAAAPDTPVNCLRKDILAHCREKANNQPGFFTLTVPTGGGKTLSSLAFALRHAVRHGLERIIYVIPYTSIIEQTADVFRSALGREAVLEHHSNFQYNREDDEDWQEISEKLKLSAENWDAPIIVTTNVQFFESLFANRSSKCRKLHNLARSVIILDEAQMLPTDYLKPCLAALIELVTNYSASVILCTATQPALNRLMPESICFKEIASDIDKLYEAFRRVKVSFIGEKTDAAVVEQLSRHEQVLCIVNTRRHARMLYEQLKSVGDVYHLSARMCPVHRTEKLKEIREILANGKPCRLVSTQLIEAGVNIDFPVVYRAAAGIDSVAQAAGRCNREGRLRTGHVFVFKPEKHGLPGGWFSRTAEIAGMVMREFDDPMSLAAVRRYFEYLFDIDREELDKQRILQLFRENEKHLLFPFTEVANKFKLIDSKTVSIIIPWDKEAKELIRELQFTNYPAGMARRFQPYTVQVYTYEFAELLRTRAIRTVAGMYHILDDSRYYDEQVGLLTPESTVLPEEVLIF
>NC_015565.1|WP_013809678.1|575429_576377_+|L-lactate-dehydrogenase
MVEKKKGVKIAIVGVGLVGASAAFAIMISGMASQLVLVDVNKDKAEGEAMDLGDAAAFIKPINVMYGTYADCQGADIVVFTAGANQKPGETRLDLVQKNIAILKESLPQLLKYCSESIILMVSNPVDVLTYAALKISGLPASQVFGSGTVLDTSRFKAELAEYCQVDPRNVHAYIVGEHGDSEVALWSTATVAGIDIEQYCQQRGLAPIDRQLVAERVRTAAYEIIKRKGATYYAVALSIKRICEAILRNENSILTVSGLVNNLYGIEHCCLSLPTIVNGTGRSKVIALPMTVREEEALRNSAQVLKEIIKQVGF
>NC_015565.1|WP_013809688.1|592764_593283_+|hypothetical-protein
MLLAGSIAGVALADSNTESTPDQSKDQFYQEFISDFAANLGVSADQVTAALEATKKQMVQEAVQQGKITQTQADEILAQKGFGFGFGMGDHRQNRGDITQNAGFLNDAAGVLGISADELKSELQSGKKLDQIINDHGMTMDQFRQKMPKPQRPLMNDKGVNNTDASAGTTSN
>NC_015565.1|WP_013809689.1|593436_593940_+|hypothetical-protein
MKNIVKKFFLLIGTTVIIASLVTGCGSTNSQSNISSDQKQEQKTIDTSSTQSDQKQNAGDTGSNQSGQDQNQKTGNINKPSGPPKGGPDRDPTQDTAFLQDAASVLGITVDQLKSELQSGKKLDQIVTEKGMTMEQFHQKMPKPQQPPVKDNAVAKKGATAGNTTAN
>NC_015565.1|WP_013809690.1|594426_596514_+|glycosyltransferase-family-39-protein
MGSKQGQRFDIILICIALLAAFLNIFNIWKNQYANAYYTSAITNMLQNWHNFFYASFDPAGYVTVDKPPVAFWVQTIFAKIFGVHGWSVILPQALAGVGSVLLMYVLVKPTFGKTAARLASLIMACTPIAVAVSRTNNIDSLLVFTLLLATWMLFRGTRNQKLSWILGAFAMIGVGFNMKMLQAYMVVPAFYLFYLLAFKGRWKRKLAVLGVSAVILVGVSLSWAVVVDSIPKENRPYIGSSQTNSVLELALGYNGISRLTGMNRGGPGGPPNQRQMDQDGNNMPGPQQMQQDGNNMREGFGPDGNGRKGPMPGGGGPPGRGGGGMFGTGQAGPLRLFQTELSGQASWLLPFVAFACVGLLAGIRRKNQLTDKENETLFWLAWLLPAMAFFSVAGFFHHYYLIMLAPPIAALAGAGWVELWNQYRNQEDWQMWLLPSGLLATTAFELYVLQPFQKQIGMGWSIGIGTAGIGLSLVLFLAAKKQKLYSTAAMAGMLVLLVAPLYWAATPLLYGDNSMLPQAGPSQPGGSGQPGGPNQQYQQDRPNQPDVSNQQGFGQRKGMGRGPDSGINAKLLAYVTKNNTGETYLFATTDSHGAAPYIIETGKAVMAMGGFSGSDPILTVEKIKKLVANKEVKYFLIPSSGSGRGGGSNSAVLEWIRANSTEVPKEEWQGNTTQGGPMGMRNDETLYKINDITK
>NC_015565.1|WP_013809691.1|599350_601102_+|hydantoinase-B/oxoprolinase-family-protein
MSQSINQPIDAFTLDIVKDSLIAIGEEMFYALARTSMSPIIYEVLDYASGLTDVNGQLLTQGNGATGFIGLLTFMVKETINKYGKDGLKPGDIIIINDPYVGGGSHLSDVGLVLPIFYNGELVAFSANKAHWTEVGGKDPGSWTTDSTEIFQEGLQFPCIKIFEEGKLNQALVDLIAANVRFPDLSLGDMWAQIAALRTGEKRFIELCDKYGKDVVMASIDRLLEHGEQMTRKQLAQLPKGTFEAVDYIDDDGVGNGPLKVQVKVTITDEKFICDFRGSHPQVLGPVNCSYAALVSAVRIIFMAITNPSQDVNDGIFRPLEVIADRGSIFACERPAAVSTYWETMIYGADLIWKALAPVLPHRLTAGHLLSVCAIIVSGMHPDTNEPFLIVEPSVGGWGAGQGKDGEPGQFCIGDGETFNVPVEVAETRYGIMVDEYSFRADGAGAGEFRGGSGCIRTYRALTDNQFVTATFGRHKYLPWGFNGGKDGSENSFSIIKANGEIDGPFGKYARYPLNKNDVVRLVTATGGGYGDPFKRPAEKVVMDVKNEFITLEQARNDYGVIINPETLAVEGFTEERLQKERN
>NC_015565.1|WP_013809692.1|601103_601439_+|cupin-domain-containing-protein
MEIVTIKDVEADKSSDVIMKTLFDENIIKDGRTKFGTVVIPPGVRVPQEGAGSHGADEYSIVLKGSIVTMSGGKEYRVTGGQATFIPAGEAHWCLNDGKEDCEIVWVLVNR
>NC_015565.1|WP_013809693.1|601508_602615_+|aminopeptidase-P-family-protein
MKVQEQRFMKAQGLLAARQLDAVVVTSPPNFFYFSGIWLDSNERLQAVVIPKTGTPKIIVHEMFREEVSGVKEFEQLFWSDGIPPIELLAKVLPAAGTVSVDNQWPSGNLISLMEVNKQLSYVHSTPILGALRLIKDDAEIKLLEESANYADQIMDRVIEFVKPGVTELEVAEEIKKLFRKEGINQLSFEPIVATGSNAAMPHHVPDDTVLREGDTVVIDMGGIKDYYCSDITRTIVLGEATPEIEKVYQVVQRAQEAAVKAIKPGLAMQDIDQVARGIITEAGYGEYFTHRTGHGLGIEVHEEPYLSPGNRQILKEGMVVSVEPGIYLPGKFGVRIEDIVVVTADGAERMNHYPRHLICRETTDARK
>NC_015565.1|WP_013809694.1|602635_603985_+|permease
MEENVLNKSIEKDEALSAIPLSERQHWLTPAMIFGGLEFTIPVLMVGAMLTASFGLTSIFWILAIALFVFQWVGNAICGYIGAKTGLSSSVIARTGFGSTQAKVIVALTIFVVSACWWALQTAVASNAISAMVGIDYKTQWFTWAIVTVVIGLIFALPSIIGYSSMKWTDYLAVPSGLLLIVAGIYLSLKNTGWETIVSWSPKPTMTFLAAVSLIIGVNVSQWVISADYTRYAKPNVKDNILIPLGIIGVVFPLFYVGAIMSVGVGSADIVQVMVKLGFPFWGFLILWLATWTSQLVNNYSMGLALANLLNVNSGKGRALLTFLGTLLAIGIALAGILDYFMDFLYMTALIYPAIAGVIFVDFFFLRNQQWVDNPGWNWMATIALVVGTLFGYYTQYVNPFGLPAVQSLIVTGVTYYVCMRMKARIVPDRFTPDQWKESGYSAGSSESV
>NC_015565.1|WP_003541497.1|604133_604763_+|DUF502-domain-containing-protein
MKKLSIYFVKGLLVLLPLLGTFYILAFIYSKIAGIGNAILFPLVGRELPGIDFVFVVAAVCLVGLIANWWISKKILALIEDFIYKMPGVKNIYTTIKDALKSLVGDKKKFDTVVLVSLNDRAYRLGFLTVKEALFKDESGRELVGVYFPQTLQVAGDLYWVPKESVTVVDMPVDQALKLIISGGASGTEVKDRQSQWQVVKKKGKKLAL
>NC_015565.1|WP_003541495.1|604817_605309_-|CBS-domain-containing-protein
MPKDLLARDIMVPIADYSTVHEDDSLRQAIYTLRTSFQRDRSGAFHGHRALLVLDNTGNISGIITLLDLLKAVELNEHFNDPWIKAASWSWYFINRVREVEGIKVKEFMRPIFLVTVNSDQPVQVAIKKMLAQEENLIAVLEKKLPVGLIRTVDIFWALSKLL
>NC_015565.1|WP_003541493.1|605330_606677_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MIPRVLVIDDEERMCWALERALSHEGYQVITTTRGVQGVSLAQEMDPSIVVLDLKMPDLDGIEVLRKIKDFNPNIPVIMITAHGTIETAIEAMKIGATDYITKPFKLEELKVVIKQALHVNQLENQVEFYRKELSKKYGKMIGQSDCMKEVSLLIRQVAKTNATVLITGESGTGKEVAAVEIHQNSNRADKPFVAVNCAALPEQLLESELFGHEKGAFTGALHKKKGRFEIADKGTIFLDEIGEMPISMQVKLLRVLQERSFERLGGTETITVDVRIIAATNSDLAAAIAKGTFREDLYYRLNVMRINLPPLRERKEDIPLLVNHFLSKFDPSHSKKISSDAMKILSRYNWPGNIRELQNVIERALIVCQGTEIQPVHLPRELLDSVEENQLPVLNLPENGFSLEELEKQLIIKALEKHNFNQTRAAQFLGISRATLLYRMQKYGIKS

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Crispr_ID: NC_015565_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015565_3

621902-624166

TypeIII

Consensus_repeat	Method
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	PILER-CR
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CRISPRCasFinder
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CRT

30 spacers

cas10,csm2gr11,csm3gr7,csm4gr5,csx1

The CRISPR arrays of NC_015565_3

>merge|NC_015565|3|621902-624166|PILER-CR,CRISPRCasFinder,CRT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTACCAGAGGGGTCCATACCTTGGTGTTACCCTCTTTCATGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACCATCGTGGGGCACTACACCAATCCGTGGTATGCACATGGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACATACTTGCTCATAATTCATCAATCCCTAAGATTCTAAGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTTTCAATATTTAATGCTAAACAGGTAAAAAACCCTGATGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTATACAAACTACATTGAAAGGCCAGACAGCAAGATGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACATCTGCTTCTGATAAGGGTCCTGGAGGTAAAGACCGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACAAACAAGATTGTTGATATATCAAAACTGCGGATACCAAGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACCAACATAATCTGCCTGCTTTTGTGTTACTTTTTTAATGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTGGCCTCATGCAGCTTTCATACGGCAGCCCAGTAAAAAGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACGTTCCCATCTCCATGAATAGCGCGCCAATGCGAGTCGGCAGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACCTACGGTTTTTAGTGTCACGAATAACCAATTCTCCGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACCCTGCTTACCGTCAAACAGAAGCACCTCGTTTGCATCTGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACACACCTAAAACCATCCTATAACTGATTCGTAATCAGCAGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACGTTAAGCTGGAGCTATTTCAAAAGGCGAAACTTCAAGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTAATGAAAAACTACTTAAGGTTTGGATTTGGTGTCTGCGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACAATAGGTGGCGGGCCGTTTCAAAAAATCCTGGGTATGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTATACCTTAAATAATATTTGATTTTATTGCTTTCTTTGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACGGATTAGCTATTGAAAACTATTTATTAAAAGGATTACGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACATCCCCAAACCATTACTATCAACTATAACAATTTTTGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTTATAAATATAATGATTAGCGCCATAGTTCGCAACTCTGGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTATCAATAAAAGAAACAATTATTTCACTATTTGCTGATGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTTTCTTAACGACTAAACAGTCCCTTAAGCCACCCCAAGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACGAGTTTTCCCCGACCCGGCACCGGCCAGATCGAGAATGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACGTATAACAGGAAATAAACCTTTTCTGATTATTACATGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACGGATACTTACCCAGGAATTCGAGAATATGCAAAAGCGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACCTACACCACCGGGAAGGTGGAAGTGATTGAGTATATCGAGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACCCCCCAAAATAGCGGTCTAAACATAAAACACATCAAACTGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTAAATGGCCCTAGAAGCGAAGAAAACTAGCTGGTATGGGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACATATCAAATGGTAACTCATAACCATGTTTACATGTTTTGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAACTTCTCCTAGACAACAAGCATGGAAACTATCTGTAGGTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC

>NC_015565|3|3|621902-624166|PILER-CR
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TACCAGAGGGGTCCATACCTTGGTGTTACCCTCTTTCAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CATCGTGGGGCACTACACCAATCCGTGGTATGCACATG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATACTTGCTCATAATTCATCAATCCCTAAGATTCTAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTTCAATATTTAATGCTAAACAGGTAAAAAACCCTGAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TATACAAACTACATTGAAAGGCCAGACAGCAAGAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATCTGCTTCTGATAAGGGTCCTGGAGGTAAAGACC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	AAACAAGATTGTTGATATATCAAAACTGCGGATACCAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CAACATAATCTGCCTGCTTTTGTGTTACTTTTTTAAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TGGCCTCATGCAGCTTTCATACGGCAGCCCAGTAAAAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GTTCCCATCTCCATGAATAGCGCGCCAATGCGAGTCGGCA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CTACGGTTTTTAGTGTCACGAATAACCAATTCTCC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CCTGCTTACCGTCAAACAGAAGCACCTCGTTTGCATCT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ACACCTAAAACCATCCTATAACTGATTCGTAATCAGCA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GTTAAGCTGGAGCTATTTCAAAAGGCGAAACTTCAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TAATGAAAAACTACTTAAGGTTTGGATTTGGTGTCTGC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	AATAGGTGGCGGGCCGTTTCAAAAAATCCTGGGTAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TATACCTTAAATAATATTTGATTTTATTGCTTTCTTT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GGATTAGCTATTGAAAACTATTTATTAAAAGGATTAC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATCCCCAAACCATTACTATCAACTATAACAATTTTT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTATAAATATAATGATTAGCGCCATAGTTCGCAACTCTG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TATCAATAAAAGAAACAATTATTTCACTATTTGCTGAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTTCTTAACGACTAAACAGTCCCTTAAGCCACCCCAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GAGTTTTCCCCGACCCGGCACCGGCCAGATCGAGAAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GTATAACAGGAAATAAACCTTTTCTGATTATTACAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GGATACTTACCCAGGAATTCGAGAATATGCAAAAGC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CTACACCACCGGGAAGGTGGAAGTGATTGAGTATATCGA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CCCCCAAAATAGCGGTCTAAACATAAAACACATCAAACT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TAAATGGCCCTAGAAGCGAAGAAAACTAGCTGGTATGG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATATCAAATGGTAACTCATAACCATGTTTACATGTTTT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTCTCCTAGACAACAAGCATGGAAACTATCTGTAG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC

>NC_015565|3|3|621902-624166|CRISPRCasFinder
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TACCAGAGGGGTCCATACCTTGGTGTTACCCTCTTTCAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CATCGTGGGGCACTACACCAATCCGTGGTATGCACATG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATACTTGCTCATAATTCATCAATCCCTAAGATTCTAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTTCAATATTTAATGCTAAACAGGTAAAAAACCCTGAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TATACAAACTACATTGAAAGGCCAGACAGCAAGAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATCTGCTTCTGATAAGGGTCCTGGAGGTAAAGACC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	AAACAAGATTGTTGATATATCAAAACTGCGGATACCAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CAACATAATCTGCCTGCTTTTGTGTTACTTTTTTAAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TGGCCTCATGCAGCTTTCATACGGCAGCCCAGTAAAAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GTTCCCATCTCCATGAATAGCGCGCCAATGCGAGTCGGCA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CTACGGTTTTTAGTGTCACGAATAACCAATTCTCC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CCTGCTTACCGTCAAACAGAAGCACCTCGTTTGCATCT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ACACCTAAAACCATCCTATAACTGATTCGTAATCAGCA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GTTAAGCTGGAGCTATTTCAAAAGGCGAAACTTCAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TAATGAAAAACTACTTAAGGTTTGGATTTGGTGTCTGC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	AATAGGTGGCGGGCCGTTTCAAAAAATCCTGGGTAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TATACCTTAAATAATATTTGATTTTATTGCTTTCTTT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GGATTAGCTATTGAAAACTATTTATTAAAAGGATTAC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATCCCCAAACCATTACTATCAACTATAACAATTTTT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTATAAATATAATGATTAGCGCCATAGTTCGCAACTCTG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TATCAATAAAAGAAACAATTATTTCACTATTTGCTGAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTTCTTAACGACTAAACAGTCCCTTAAGCCACCCCAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GAGTTTTCCCCGACCCGGCACCGGCCAGATCGAGAAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GTATAACAGGAAATAAACCTTTTCTGATTATTACAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GGATACTTACCCAGGAATTCGAGAATATGCAAAAGC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CTACACCACCGGGAAGGTGGAAGTGATTGAGTATATCGA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CCCCCAAAATAGCGGTCTAAACATAAAACACATCAAACT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TAAATGGCCCTAGAAGCGAAGAAAACTAGCTGGTATGG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATATCAAATGGTAACTCATAACCATGTTTACATGTTTT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTCTCCTAGACAACAAGCATGGAAACTATCTGTAG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC

>NC_015565|3|3|621902-624166|CRT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TACCAGAGGGGTCCATACCTTGGTGTTACCCTCTTTCAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CATCGTGGGGCACTACACCAATCCGTGGTATGCACATG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATACTTGCTCATAATTCATCAATCCCTAAGATTCTAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTTCAATATTTAATGCTAAACAGGTAAAAAACCCTGAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TATACAAACTACATTGAAAGGCCAGACAGCAAGAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATCTGCTTCTGATAAGGGTCCTGGAGGTAAAGACC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	AAACAAGATTGTTGATATATCAAAACTGCGGATACCAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CAACATAATCTGCCTGCTTTTGTGTTACTTTTTTAAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TGGCCTCATGCAGCTTTCATACGGCAGCCCAGTAAAAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GTTCCCATCTCCATGAATAGCGCGCCAATGCGAGTCGGCA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CTACGGTTTTTAGTGTCACGAATAACCAATTCTCC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CCTGCTTACCGTCAAACAGAAGCACCTCGTTTGCATCT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ACACCTAAAACCATCCTATAACTGATTCGTAATCAGCA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GTTAAGCTGGAGCTATTTCAAAAGGCGAAACTTCAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TAATGAAAAACTACTTAAGGTTTGGATTTGGTGTCTGC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	AATAGGTGGCGGGCCGTTTCAAAAAATCCTGGGTAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TATACCTTAAATAATATTTGATTTTATTGCTTTCTTT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GGATTAGCTATTGAAAACTATTTATTAAAAGGATTAC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATCCCCAAACCATTACTATCAACTATAACAATTTTT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTATAAATATAATGATTAGCGCCATAGTTCGCAACTCTG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TATCAATAAAAGAAACAATTATTTCACTATTTGCTGAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTTCTTAACGACTAAACAGTCCCTTAAGCCACCCCAA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GAGTTTTCCCCGACCCGGCACCGGCCAGATCGAGAAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GTATAACAGGAAATAAACCTTTTCTGATTATTACAT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	GGATACTTACCCAGGAATTCGAGAATATGCAAAAGC
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CTACACCACCGGGAAGGTGGAAGTGATTGAGTATATCGA
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	CCCCCAAAATAGCGGTCTAAACATAAAACACATCAAACT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TAAATGGCCCTAGAAGCGAAGAAAACTAGCTGGTATGG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	ATATCAAATGGTAACTCATAACCATGTTTACATGTTTT
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC	TTCTCCTAGACAACAAGCATGGAAACTATCTGTAG
GTTGCAATTACCACCCGCTAAACAAGGGGACTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015565.1\|WP_013809701.1\|618393_618936_+\|GerMN-domain-containing-protein	unknown	unknown	gnl\|CDD\|378464
NC_015565.1\|WP_013809712.1\|634392_635019_+\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	unknown	unknown	gnl\|CDD\|381171
NC_015565.1\|WP_013809698.1\|613727_615119_+\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NC_015565.1\|WP_013809705.1\|626743_627280_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	mkCas0187_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_015565.1\|WP_013809710.1\|631911_633306_+\|cobyrinate-a,c-diamide-synthase	unknown	unknown	gnl\|CDD\|234896
NC_015565.1\|WP_013809700.1\|617079_618171_-\|S-layer-protein	unknown	unknown	gnl\|CDD\|306825
NC_015565.1\|WP_013809713.1\|635011_635614_+\|precorrin-6Y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiT	unknown	unknown	gnl\|CDD\|225151
NC_015565.1\|WP_003541458.1\|619067_619784_-\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|381172
NC_015565.1\|WP_013809708.1\|628878_630237_+\|hypothetical-protein	csx1	cd09747_csx1_CAS-III	gnl\|CDD\|187878
NC_015565.1\|WP_081460793.1\|624279_626739_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_015565.1\|WP_013809697.1\|610934_612641_+\|Na/Pi-cotransporter-family-protein	unknown	unknown	gnl\|CDD\|224202
NC_015565.1\|WP_013809709.1\|630725_631781_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|376752
NC_015565.1\|WP_013809707.1\|627949_628882_+\|hypothetical-protein	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|273866
NC_015565.1\|WP_013809703.1\|620910_621531_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NC_015565.1\|WP_013809699.1\|615189_615885_-\|phospholipase	unknown	unknown	gnl\|CDD\|211381
NC_015565.1\|WP_003541474.1\|616197_616845_+\|peptidoglycan-endopeptidase	unknown	unknown	gnl\|CDD\|366353
NC_015565.1\|WP_013809702.1\|619851_620691_-\|cobalt-chelatase	unknown	unknown	gnl\|CDD\|368778
NC_015565.1\|WP_003541481.1\|612821_613529_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NC_015565.1\|WP_013809706.1\|627282_627936_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_015565.1\|WP_013809711.1\|633298_634414_+\|cobalt-precorrin-5B-(C(1))-methyltransferase	unknown	unknown	gnl\|CDD\|234615

Protein	Function_ID	Function_description	E-value
NC_015565.1\|WP_013809701.1\|618393_618936_+\|GerMN-domain-containing-protein	gnl\|CDD\|378464	pfam10646, Germane, Sporulation and spore germination. The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520, Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.	1.7398e-23
NC_015565.1\|WP_013809712.1\|634392_635019_+\|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE	gnl\|CDD\|381171	cd11644, Precorrin-6Y-MT, Precorrin-6Y methyltransferase (also named CbiE). CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.	1.84833e-74
NC_015565.1\|WP_013809698.1\|613727_615119_+\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	0
NC_015565.1\|WP_013809705.1\|626743_627280_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	3.52344e-11
NC_015565.1\|WP_013809710.1\|631911_633306_+\|cobyrinate-a,c-diamide-synthase	gnl\|CDD\|234896	PRK01077, PRK01077, cobyrinate a,c-diamide synthase.	0
NC_015565.1\|WP_013809700.1\|617079_618171_-\|S-layer-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	1.06057e-09
NC_015565.1\|WP_013809713.1\|635011_635614_+\|precorrin-6Y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiT	gnl\|CDD\|225151	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].	8.31345e-66
NC_015565.1\|WP_003541458.1\|619067_619784_-\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|381172	cd11645, Precorrin_2_C20_MT, Precorrin-2 C20-methyltransferase, also named CobI or CbiL. Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.	8.9912e-102
NC_015565.1\|WP_013809708.1\|628878_630237_+\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	6.06438e-10
NC_015565.1\|WP_081460793.1\|624279_626739_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.00468e-151
NC_015565.1\|WP_013809697.1\|610934_612641_+\|Na/Pi-cotransporter-family-protein	gnl\|CDD\|224202	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism].	2.35033e-132
NC_015565.1\|WP_013809709.1\|630725_631781_+\|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl\|CDD\|376752	pfam02277, DBI_PRT, Phosphoribosyltransferase. This family of proteins represent the nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) enzymes involved in dimethylbenzimidazole synthesis. This function is essential to de novo cobalamin (vitamin B12) production in bacteria. Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) from Salmonella enterica plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin.	0
NC_015565.1\|WP_013809707.1\|627949_628882_+\|hypothetical-protein	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	9.39037e-16
NC_015565.1\|WP_013809703.1\|620910_621531_+\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	2.7005e-59
NC_015565.1\|WP_013809699.1\|615189_615885_-\|phospholipase	gnl\|CDD\|211381	cd11009, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium.	4.12552e-66
NC_015565.1\|WP_003541474.1\|616197_616845_+\|peptidoglycan-endopeptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	2.50365e-42
NC_015565.1\|WP_013809702.1\|619851_620691_-\|cobalt-chelatase	gnl\|CDD\|368778	pfam06180, CbiK, Cobalt chelatase (CbiK). This family consists of several bacterial cobalt chelatase (CbiK) proteins (EC:4.99.1.-).	2.38674e-75
NC_015565.1\|WP_003541481.1\|612821_613529_+\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	3.47187e-70
NC_015565.1\|WP_013809706.1\|627282_627936_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.4635e-82
NC_015565.1\|WP_013809711.1\|633298_634414_+\|cobalt-precorrin-5B-(C(1))-methyltransferase	gnl\|CDD\|234615	PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed.	1.89457e-165

>NC_015565.1|WP_013809703.1|620910_621531_+|YigZ-family-protein
MWQLLSYRTVDRAAVTEISIKKSRFIANVKPVPDEAAANEFIREISKMHRDATHNVYAYRIGENQEKCSDDGEPSGTAGRPVLNVIKGENLYQVAVVVTRYYGGILLGAGGLVRAYSQAAAQGVSAAGIVTRSLHQQLQVKFTMPLFGLIKRVIEQSGAKILDVSVTDKATITCRLPVAEADRLMAEITEVSAGQAMVKKLEREYV
>NC_015565.1|WP_013809702.1|619851_620691_-|cobalt-chelatase
MPIYNEEKAILLVTFGTNVSQAAASFKLLENKIRQAFPGVKLVWAYTAKTIRQKLAQQGQFFDSPITALAKLQDTGYTRVAVQSVHIIPGQEYYDLVHIVDNMSHFHGSSGTHFQTKIGKFGFHKLTLGTPLLYQLDDFMAVAQALRPYVPTDNHHALVLVGHGSGHHSFSAYGCLNDLLRQTYQNVFLGTVEGYPSLREVQRDLARAGVSRVTIMPFMNIAGDHAINDLAGDQPDSWRSQLARAYTVAANLTGLLDIEAIVDIYIKHLQKAYNKLDEE
>NC_015565.1|WP_003541458.1|619067_619784_-|precorrin-2-C(20)-methyltransferase
MKGTLYGIGVGPGDPELITLKAVNILKKIDVVIAPRTQKNEKSTALNIAMPHLRQNTEILELVFPMVYDENQLNEAWLDGKNTILNLLEQGKQVAFLTLGDPMLYSTYIYIFRLLAPHRVDIQTIPGITSFCAAGSRLGYPLAEGNDIVSIIPATCGQDKLARALDYSDSVVLMKVYRNINEVVDQLKSHHLSEQAVMISKCGHPDETIHYQIDRSADLKPVYLSTILAKKSLSKQVE
>NC_015565.1|WP_013809701.1|618393_618936_+|GerMN-domain-containing-protein
MRKITVSRIVLVFVLILSLLLTGCAAGDKGNKAQDTPKPQAQTEVQTPAKEKVKVTLYFANKEADALVPVQREIDKPKDIVMALINELNNPGDYAPVLPKGTKLLSYEKSGDTITLNFNQAFANLQGTTGELIAINSVVDTITELPEFKKVKILVEGKTLTTGHAVYDQPLTRDESMIKK
>NC_015565.1|WP_013809700.1|617079_618171_-|S-layer-protein
MRKAGKLFIMLFSVIMLTTLLVSSAWADPWKKTQVQTKGWQKHQNQLTVTYHFKDIQNHWARNEIQNLYAKGVMKGYEQQLFKPNSSVSKNEALATIMRIVDHQQVNINSDKKKLLQRIFPAWMGLAPIQAYDSGILADWELINWNGNQPATRIEVAMWLSRAAGDKEVSVKELLSFKDIKQLSKDELVYAAIMYNRGIMRGTPDGYLNPFKPISRGEFAVMICRFMDSETGNYHDENGQESPDLVEQLTPANGAKVATDTKEFKINFSADMVLADGKDMGDLAEAVKILKYQDGRWVDAGLEFALVFNENNDQLVVKLDNNENLATDTKYCITVDDGILVADTSKEEPFDGIAKGQWSFTAE
>NC_015565.1|WP_003541474.1|616197_616845_+|peptidoglycan-endopeptidase
MHFLKRAGVVAASFCLATLLWNGSAFAAEVTVKPGDSLWAIANRTGTTVEAIKKLNNLSSDLIHPGNVLKVPDKIGNKSWRPANAVQRVSRGEVDRGEAVVDYAKQFIGVPYRSGGTTPAGFDCSGYVSYVFKHFGIDLVHTAAGQYNAGPAVNKANLQPGDLVFFNTGGGISHSGIYVGNNQFIHASTSQGVIISSLEDSYWAPKYRGANRIIR
>NC_015565.1|WP_013809699.1|615189_615885_-|phospholipase
MSLTQTTWHCAKAMLTLTIPFQAIKSSRPRNTHRFCNLQAINILKRDGFRQEALLYHSFRDALNRGAVWCDKGFKNISHYYNHQANSGLWHGPDAPTECQFYVNRAVKKWRQGRLSEAMFYLGAAVHIIQDLCVPHHASGLVFGGHKFFEDWAREHYEDFTVNHGGIYDLADSGADWVIENAAVSATYLPQVINGNNSTAIAGVVEILLQRAQKTTAGFLLYFHRLTQFKK
>NC_015565.1|WP_013809698.1|613727_615119_+|sodium-dependent-transporter
MRQTNLVRTQVATREGFSSTLGVIAATLGSAVGLGNIWKFPYVTGENGGAAFILIYLFCIALIGLPVMISEFVIGRRSNSAAVGSLKKLAPGTPWFLTGVSGTLVAFLIMCYYTSVAGWVYAYIFKALSGSLGTTDPKVSGEAFASFISGTWSPLIWQWIVLIVTGAVILAGVKNGIERMTKTLLPILFVLLLICDIRALTLPGASKGVAFLLSPDFSKITGAAILTALGLAFFKLSVGMGVMTTYGSYIGKNESLIGTGVKVALMDILVSMMAGMAIFPAVFAFGSNPAQGPSLLFITIPMVFNSMPFGQALLAIFFVLASIAATGAMISLFEVPVAYLTEERHWSRKTATVVTALAIALLGSTATLSASEASLLANFKIFGKGMFDFLGFLTDNIGLPLTGLALALFAGWKLTSSDVYDEISNGGSLNNRGLIRYYLFATRLVAPIGIVIILLSGLGFIKL
>NC_015565.1|WP_003541481.1|612821_613529_+|M48-family-metallopeptidase
MNKWGSITLGGQVISYLIKESKRAKNLNIKVNAVNGLEVVVPCDYPLNKVEPLLKTKEKWILEKMAVMSARGRLKPLFSEPTVLFLGKPYRLVTVFQQGQPSLELLGDKIIVILPQTRESEVKKVLEQWLRYQARCIITQRLDLIKKKLNLEYNKVFIKDQKTRWGSCSSQGNLNFNYRLVMAPLPVIDYLVTHELAHLAEMNHSKRFWSLVERVCPEYKKHRQWLKEHGSELTL
>NC_015565.1|WP_013809697.1|610934_612641_+|Na/Pi-cotransporter-family-protein
MVWESAVLSMIGGMGLLLYGMSLLSDGLQKIAGKRLREALTSLTKKRLVALGLGTLITVLFQSSTATTVILVSLTSAQIITLRQTLAVILGADIGTTITAQLIALKVTEISLPVVGLGAVITFYAKTHRYKRIGQVLIGFGLLFLGLKIMADTMYPLKNDPMFAKILLHLSGSPVLALGVAAIFTFLVASSAATIGIIMLLAMQHLITLEPAIYMLFGANIGTAFTAVLSSIGSSRESQRVATAHLLFKVAGVLLFIPFVSPLAKIISSLIPSPGFRVANMHTFFNVAIATLFLPFINQFARLLELIVPEKKDINGEIRPKYLDETLFSTPELAIGMAAKEIMHVSDHVMDMAKPIYSLLKTYDPDLAENVKKKENDIDILVNATNKYLTRLLRQQLTRDEFNKAMGLIHIIRDYEYIGDVIEKNILYKAEGKYANNVDFSAEGHKDIITMHNKVIELLHVVNTAFATNSCMLAEKAKSLQEDIVDLEFRLRMSHIARLQKGAKETENTTFIHMDVINAYLRISEHLRNIAMALTDEVSCTWHDEALILTPPSEVWEGNRNNQHHTGF
>NC_015565.1|WP_081460793.1|624279_626739_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MIRGRNMNREYQTIVLAGLLHDIGKFLQRGDFLRSLKVAGKHPAVSAGFIKAWHQVFEKVADVQLLIELVQRHHETNSFPPELQVQQADPQIRPLAYLVSAADNYSSAERGEQSGEYRDYKTVPLASVFARLKLNHPTPEVYHYKLHPLNPVNSFPQPFKALDPQQTNKYLNAFGREFAKMADSIKLSDFACLYTHLLSLLQRYTWCIPSNTQELMPDISLYDHLRTTSAIAACLYRYHKETGTLHEKAITDKNSNKFRLVVGDLSGIQNYIFDIANIGVGGVAKRLRARSFYLNVLSEAISHRLINSFDLPITNVVMSSGGKFYVLIPNLPGSAEKIDNWQNELDQWSVNEFNGEIIINLAQTTFNGQAFNHFGEILAELADGLNCRKSTPLKGYLVNNDAWVTERFTRDQPKIAAGLCRSCHKGAVSYIDDNGDGLCRHCQRDLHMGSLLPGASYIAFTRSNVPAKYQSTTFQIYDNYSITLFADAPDQEYPAYLVNKLTDSDVGEIANHPALPKLVANYIPLAHEDYCSGCSGCHDEKPVPGQPVYFDCLANRARGRKLLGYLKADVDNLGQLFVFGLREEKADRNSISRIATMSRMLDLFFSGRVEQLLNNHYDSCYTVFSGGDDLLIVGPWDEVTKLALQVQREFTEFTNNNKNITLSAAVSLLKPGIPVSRSVVVAENALEMSKETVLKGESEGRNQLTLLGRTFKWSKAAQLLERAEQLTAWLEADILSTGFMRKLLGFFTMYKHYYDRGDARGLKYLPLLTYTVTRYFPRMDECSGDKLDALLWTQNLKQLDHDELIYLDLLVKYALCAKE
>NC_015565.1|WP_013809705.1|626743_627280_+|type-III-A-CRISPR-associated-protein-Csm2
MGKCRICGKPTLGDYQYCMQCNNSRAANKRLQGNTMPRQNSQVSVACKLGADYLKDGYYNDQGYLRKEIFTTEAEMVAGVLAASGMTSASLRRFYNKLRGIYARYQDNKNFDEIKPYLYKFYPNATDAVRRKIVPEEFRRFININVALAEQSPENLKGFVEHFQSVVAYFKDNEGRRN
>NC_015565.1|WP_013809706.1|627282_627936_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MELTKYMVIKGIILCETGLRIGGSKDDIEIGGNDNPIIRYPLTGLPYVPGSSLKGKMRALLELKYSLKTQRSGDPCTCGNCLVCKVFGTHKAAESRLGPTRIIVRDAFLSPKSVNEFKAANQDKGIFYSEVKYENMVDRNTGKAGHPRPNERVPAGTEFAFEIVLRIFKEDNEKDMLDFVKEGLQLVEKDYLGACGSRGYGKVRFINITLDNEPFDL
>NC_015565.1|WP_013809707.1|627949_628882_+|hypothetical-protein
METYRIKIQPKGGFITPFQADTIFGSLCWVIRYSEGSNFLKAMLNDFRSGRPWFVLSNAFPGDLLPKPMIRMKMVAPTNREEQINMAREGKRLKKIQYLTPEEFSRLAAGSPGAIENKKEPIIMSATLHNQVNRLLGSAGEGGELYEQEESYLNPEYGYFSIYLKVREAGLLDRLAILFDQLGSTGFGKRKSTGKGCFSVLGVDKYDLFETVEHANAFISLSNFVPAPGDPVKGNYRILVKYGKLGEQLALSGNPFKRPLLMLKAGSIFQVNGAVKHFYGQMIEDIAPQHPEVLQYALAFSVPARWEGEN
>NC_015565.1|WP_013809708.1|628878_630237_+|hypothetical-protein
MKVLLTFVGEQDPYSDKTGEEGSIVTLCRHLKPQVVYLFPTAAGFNVRSETQSRAVDTENWIKTEIDSTIRIFIRPLSFTDPTDYAVILPLARRAMAGVLQELEQVACEFHINCSSGTPQLKSTWLILANAGLLKNCHLWQVANPQFKQENRVNRLEVTFLEEENLLSRIKQYAKEFLFQGIADECNRLKDISLYSYRKEKAALLARIFNAYQSWDLIRYDDAYKRLNSVYNEASKTRDLAELAMVLEPQVKVLAVLKDNKEKENKFNLVDLYMNARRRLIRADYTDTLSRFWRIYEGVLFYHFRNRYQIEPGDLHKSNDQARVKAILNSSHFYSGVKQLSISSSVKVLKEIFKDKIFGKLAEQTITATRGQSSQNLEVFKLLEELRSKRNESIVAHGMKPVMEDDAVNCMRVAEVVLKEFIPETAELIDNYPLNFQQVLKVIEILDTAFSL
>NC_015565.1|WP_013809709.1|630725_631781_+|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MELLKQTIAQIDPPDQQAIKSARERLDSLTKPPGSLGRLEEIAYRLAGIQGQAIPELPREKVMMVLAGDHGVVAEGVSAFPQEVTPQMVANFLRGGAAINVLSRQAGARVVVADIGIAGPPLPWPGLIDCRVKPGTDNFVLGPAMSRTEAVQAIEAGIKLVYQQVQGQPALVGTGEMGIGNTTPSSAILAVFGGLSPREVTGRGTGIDDARLVHKAAVIARAIEVNRPDPNDGLDVLAKVGGLEIAGLAGVILGCAARRLPVVIDGFISGAAALVARSLAPLSREYMFASHLSNEPGHRLMLEMLDLKPMLQLDMRLGEGTGAALAFPLLEAAIRVINEMATFAEAGVSQV
>NC_015565.1|WP_013809710.1|631911_633306_+|cobyrinate-a,c-diamide-synthase
MHIPRLVLAGTHSGVGKTTVTLGLLAALNRRGLRVQPFKVGPDYIDPGLHRAAAHCVSHNLDSWMGSPAQVRQLFIRRAAGSDLAVVEGVMGLYDGVRGRGEAGSTAQVAKIIQAPVVLIFPAKGLARSAIALISGYRSFDPRVQIGGVIANGVGSDRHREFLREVVEGELSLPLLGALSHRQEIVMPQRHLGLLPAVENKELNRTLEQLARVAEEQLDIDKIIDLAQKAPLLEDGPGLPCTRPVPRVRLAVARDEAFNFYYDDSLDYLTESGAAIVPFSPLRDAQLPPDIDGIYIGGGFPEQFLPELAANQLIKQQIIAAHQSGMPIYAECGGLMYLCQGICSLSGEEFPGVGLVPARVKMERKLAALGYVRARLVKPTLLGEPGLELRGHEFHWSTISALSPADAAYQLSGGRGTEERPEGYAKDNLLASYVHLHFRYNPTAAGNFLAQCTRYGQVRRTKHG
>NC_015565.1|WP_013809711.1|633298_634414_+|cobalt-precorrin-5B-(C(1))-methyltransferase
MDKVRTKELRSGYTTGSCAAAAAKAAARALVDGTLLTQVTITLPAGGQLTLPIARVEPGDGWCRAQVIKDAGDDPDVTHGLAIVAEVRPAAGGISILGGPGVGTVTKPGLAVPVGQPAINPVPRQMIEREVREVLPPGQGARVIISAPGGEKLAHQTMNPRLGIVGGISILGTGGIVRPMSEEAYRQSLVPQVDQALALGYRHLVLTPGRLGVNKARELGLPPDCIVETSNFIGTLLEECAKRPVEAVLLFGHLGKLVKVAAGIFHTLGRLADARRETLAAHAALQGAPREVIVQIMNMNTAEEVVGILQRYGLSNVWHQVAAAASRRAAQYVGDKYLVGTMMYSLSGEIVGYDAGARQIGGELGWHIALP
>NC_015565.1|WP_013809712.1|634392_635019_+|precorrin-6y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiE
MAYSITVIGVGPGSPDFLTPAGSRALAQADLVVGAKRLLITFAQPHQEVYPLGADLAEAAEFIRRKSEEKQVAVLVSGDTGLYSFADYLAERLPADRLTLVPGISSVQLMFARLKRPWQEAVIISRHGRQDRRLIQLVQSGLVVAVLTDRYNTPQLLAAELLTAGCQDLPVAVGCNLSYDDETIYRGKLSSLRESTEQFVNCVVVIGV
>NC_015565.1|WP_013809713.1|635011_635614_+|precorrin-6Y-C5,15-methyltransferase-(decarboxylating)-subunit-CbiT
MSRAEWPYGTPGIPDHLFKRVSGIPMTKQEIRAVVISKLRLFPTAVVYDVGAGTGSVTVECALQARGGTVYALEKDGQADELVEANARRFGLTNVKLVPGEAPATMEKLPPADRIFIGGSAGALAEILQMAHRKLKSGGWLVATAVTLETGPAILDFLTRQGYDQVEAVAVNVAKIKQVGSAHLWQAENPVQIIAGQKPR

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Crispr_ID: NC_015565_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015565_4

804318-808973

Unclear

Consensus_repeat	Method
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	PILER-CR
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CRISPRCasFinder
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CRT

62 spacers

cas4,cas2,cas1,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_015565_4

>merge|NC_015565|4|804318-808973|PILER-CR,CRISPRCasFinder,CRT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGAAAGGGCAGAAAGGAGAAGAAAAATGTTAATTAAAACAAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACACGAAAGGTGGGTAACAAAAATGGCAAACAATAATGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACCATACTTAGCAGTACGTTGCTTATCACGCCGCCGTTTGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACCGGCTATTTGTACTTGTCTTTCGTATATCTGCGCCAGTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTAGTCTATTGTCATCGTACTCCCGCCACAGCTCCGCATACGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGAAACTTAATCTCTCTCATCTTCTTTCCCTCCTATCTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAAATGTTACTGGCTGAAACACTGCCCGGAAGCCAAAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTATGGCGGGACACCACCATGCCAACGGCCATGTTTTGCGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGACAAAGACAGGTCAGACTTGGCAGCATCAATTAAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTTTCAAACTTATTCTTGCTCCCCGCCCGGTCTGATTCGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGCCCACCATAACAATGATTCTTTCCTTCAAAGGCAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGCTAAAAGAATTATTATTCCTAATGTTATTTAGCTGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACATTCCAACTGCATAGCCGTCTTGCCTAGGCCTGTCCCGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAACCTCAACATAACACGTCTTAGGGCCTATATCTGCAATAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACATGATATTCCTACCGTATTAGCCAGCGTTGCAATGTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTCTGTAGGAACCTGTATATCCGGTGGATTGCCTGGATGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGCTGATATAACATATGGAATGTTGCAGGGGTGGAATGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACACCATCGGCCCGAAGGCCTAGGTTTCGTCCCGGAGCGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAACTCCATATGGTCATTGGGGGCCGGTGTAGCAGTACAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTCCTTTTCGTATGTGTCGATGTGGACGGAGCCTTCCACGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGAGCAAAATCCCAGGTATCTATGGCAGTAACTGGCGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAAGCTAAAATAGCTCCCGCTGCTTTCATGCTAACGCCTTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTTCAATATCGGCAATTGCCTGTAATATTGGGTAAACTTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAACCAAGACAACGAATTTCGTCGGGTTGGAATAGCCCGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACCCACTAATGGATACGATGATGTTCTCAAATTCATCGAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACATATGATCATCTATAATATTTAATATTTGTTTAATTATGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACCTAATTCCTCCTTTGCTTCTGCCTTTTGATAGTAATATGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGAAATGGAGTGTTGTGGATTTATCAATACTCCGGAATTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAAAGATACAGAAATCAGATTAACTGTGATATGGAAAATAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAATACTTTAGCAAAATATTCTTCTTGTTCTTTTGTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAACTGCTTCAAACCAGTAAAACACCCTACCTATTGTTGAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGCGAGTACATTCCGGTTCATATTCGCCGGAAATGGCCGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTCACAATCCCACCTTCCGGAACCGTCGCCCGGTGTCGGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACATTTATTATAAAAATGTATATAATGAAGAATATTACTTTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAGGCCGAAGCCGTCGGGTCGGTCACTGCCGTTGCAGCCAAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACCGGTAAGTGATTTTGCCGCTCTTGAAGCCTGCTTCAAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGCCGAACAGTTTCTTTTAGGCTGACCGGGCAGAACCAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTCACGATTACATAAGTGGCCGTTAAAAAACCACATTTTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTCGAGCGAATTATGTGTGCTATATTGACGGCTTTTTCTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTTTTTCCACATGTAGTCATATATCTTTGAGTACTGCAGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAATATTTCTTATATGGATTTATTTTCAATGGGGAATGGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGAAGTTTTTTTGATACGGTATTCCCTTGGGCTGGCATAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTAAATAGGCAAATGAATCACGATAGTTAGGTGACGGATGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACATCAACACACCCATAATAGTAATACCTACAGGAAGTAAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACACAAACATCCAGACCCCATAAGGATATCTCTTAGCCCGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGGAAATTCCATTAGCAGATTGTTCGTTCCTTCTTCATAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGAAAAAGTAATTCGTATGGGTAATTTTAAATTTTATACGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGAAATTTAACGTAACTAGTGAGCAGCTTTTAAATGCTTTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGTAGTCAGTTGTCTGTCCGAGCAGGTTTATAAGCGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTTCAAGGGATTCCAACTAAGGGATGTTTGCGCTGGCGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACATGGAAGGTAACCTTCGCCGTCGCAGTTGGGGCAGTATGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAGCGCCAGCAACTGTTTCACGTATGTTGAAGTCTTTTGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACTTTCCAAAAGCTTTCCGTGGAACAGTGCGACTGATTCTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACCGGTTTCAAAGCTCGCGCCGGTAATAGGGTTAAACTGCTGGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAAGGAAACGTGCTTAAAGACAAAAAGATTAAAATTTATGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACAAGCATATGGTGTTTACAAAGCCAAGGACAAGGTTAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGGTAGAAGTCGCCTGGTTTGAGTATTTCGAGCACTGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACATGACCGCCTTGTTTGCATTATATATCGCTGAGTATGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACGTGCTTACAGGTACATCAACGCCGACGTGGTATATGAGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACACAACAATATGCGACTTTCCGAGCTGTCTTTTAACCTTCGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACATTATTGCTATAGTTGATTCTGATTGTGATTATGCACGTTACAATTACCTCCCGGTTATCAAGGGGATTGAAACACAGGCATCAGCGCAATTCTGTGACTGTTTTTCAGCCCGTTACAATTACGTCCCGGTTATCAAGTGTGTTTGGCA

>NC_015565|4|4|804318-808898|PILER-CR
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAAGGGCAGAAAGGAGAAGAAAAATGTTAATTAAAACAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACGAAAGGTGGGTAACAAAAATGGCAAACAATAAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CATACTTAGCAGTACGTTGCTTATCACGCCGCCGTTTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CGGCTATTTGTACTTGTCTTTCGTATATCTGCGCCAGT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TAGTCTATTGTCATCGTACTCCCGCCACAGCTCCGCATAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAACTTAATCTCTCTCATCTTCTTTCCCTCCTATCT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAATGTTACTGGCTGAAACACTGCCCGGAAGCCAAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TATGGCGGGACACCACCATGCCAACGGCCATGTTTTGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GACAAAGACAGGTCAGACTTGGCAGCATCAATTAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTTCAAACTTATTCTTGCTCCCCGCCCGGTCTGATTC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCCCACCATAACAATGATTCTTTCCTTCAAAGGCA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCTAAAAGAATTATTATTCCTAATGTTATTTAGCTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATTCCAACTGCATAGCCGTCTTGCCTAGGCCTGTCCC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACCTCAACATAACACGTCTTAGGGCCTATATCTGCAATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATGATATTCCTACCGTATTAGCCAGCGTTGCAATGT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCTGTAGGAACCTGTATATCCGGTGGATTGCCTGGATG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCTGATATAACATATGGAATGTTGCAGGGGTGGAAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACCATCGGCCCGAAGGCCTAGGTTTCGTCCCGGAGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACTCCATATGGTCATTGGGGGCCGGTGTAGCAGTACA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCCTTTTCGTATGTGTCGATGTGGACGGAGCCTTCCAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAGCAAAATCCCAGGTATCTATGGCAGTAACTGGCG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAGCTAAAATAGCTCCCGCTGCTTTCATGCTAACGCCTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTCAATATCGGCAATTGCCTGTAATATTGGGTAAACTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACCAAGACAACGAATTTCGTCGGGTTGGAATAGCCCG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CCACTAATGGATACGATGATGTTCTCAAATTCATCGA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATATGATCATCTATAATATTTAATATTTGTTTAATTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CTAATTCCTCCTTTGCTTCTGCCTTTTGATAGTAATAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAATGGAGTGTTGTGGATTTATCAATACTCCGGAATT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAAGATACAGAAATCAGATTAACTGTGATATGGAAAATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AATACTTTAGCAAAATATTCTTCTTGTTCTTTTGT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACTGCTTCAAACCAGTAAAACACCCTACCTATTGTTGA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCGAGTACATTCCGGTTCATATTCGCCGGAAATGGCC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCACAATCCCACCTTCCGGAACCGTCGCCCGGTGTCGG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATTTATTATAAAAATGTATATAATGAAGAATATTACTTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AGGCCGAAGCCGTCGGGTCGGTCACTGCCGTTGCAGCCAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CGGTAAGTGATTTTGCCGCTCTTGAAGCCTGCTTCAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCCGAACAGTTTCTTTTAGGCTGACCGGGCAGAACCA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCACGATTACATAAGTGGCCGTTAAAAAACCACATTTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCGAGCGAATTATGTGTGCTATATTGACGGCTTTTTCT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTTTTCCACATGTAGTCATATATCTTTGAGTACTGCAG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AATATTTCTTATATGGATTTATTTTCAATGGGGAATGG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAGTTTTTTTGATACGGTATTCCCTTGGGCTGGCATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TAAATAGGCAAATGAATCACGATAGTTAGGTGACGGAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATCAACACACCCATAATAGTAATACCTACAGGAAGTAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACAAACATCCAGACCCCATAAGGATATCTCTTAGCCC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GGAAATTCCATTAGCAGATTGTTCGTTCCTTCTTCATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAAAAGTAATTCGTATGGGTAATTTTAAATTTTATAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAATTTAACGTAACTAGTGAGCAGCTTTTAAATGCTTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GTAGTCAGTTGTCTGTCCGAGCAGGTTTATAAGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTCAAGGGATTCCAACTAAGGGATGTTTGCGCTGGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATGGAAGGTAACCTTCGCCGTCGCAGTTGGGGCAGTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AGCGCCAGCAACTGTTTCACGTATGTTGAAGTCTTTTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTTCCAAAAGCTTTCCGTGGAACAGTGCGACTGATTCT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CGGTTTCAAAGCTCGCGCCGGTAATAGGGTTAAACTGCTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAGGAAACGTGCTTAAAGACAAAAAGATTAAAATTTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAGCATATGGTGTTTACAAAGCCAAGGACAAGGTTA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GGTAGAAGTCGCCTGGTTTGAGTATTTCGAGCACT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATGACCGCCTTGTTTGCATTATATATCGCTGAGTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GTGCTTACAGGTACATCAACGCCGACGTGGTATATGA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACAACAATATGCGACTTTCCGAGCTGTCTTTTAACCTTC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATTATTGCTATAGTTGATTCTGATTGTGATTATGCAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC

>NC_015565|4|4|804318-808973|CRISPRCasFinder
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAAGGGCAGAAAGGAGAAGAAAAATGTTAATTAAAACAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACGAAAGGTGGGTAACAAAAATGGCAAACAATAAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CATACTTAGCAGTACGTTGCTTATCACGCCGCCGTTTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CGGCTATTTGTACTTGTCTTTCGTATATCTGCGCCAGT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TAGTCTATTGTCATCGTACTCCCGCCACAGCTCCGCATAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAACTTAATCTCTCTCATCTTCTTTCCCTCCTATCT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAATGTTACTGGCTGAAACACTGCCCGGAAGCCAAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TATGGCGGGACACCACCATGCCAACGGCCATGTTTTGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GACAAAGACAGGTCAGACTTGGCAGCATCAATTAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTTCAAACTTATTCTTGCTCCCCGCCCGGTCTGATTC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCCCACCATAACAATGATTCTTTCCTTCAAAGGCA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCTAAAAGAATTATTATTCCTAATGTTATTTAGCTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATTCCAACTGCATAGCCGTCTTGCCTAGGCCTGTCCC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACCTCAACATAACACGTCTTAGGGCCTATATCTGCAATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATGATATTCCTACCGTATTAGCCAGCGTTGCAATGT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCTGTAGGAACCTGTATATCCGGTGGATTGCCTGGATG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCTGATATAACATATGGAATGTTGCAGGGGTGGAAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACCATCGGCCCGAAGGCCTAGGTTTCGTCCCGGAGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACTCCATATGGTCATTGGGGGCCGGTGTAGCAGTACA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCCTTTTCGTATGTGTCGATGTGGACGGAGCCTTCCAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAGCAAAATCCCAGGTATCTATGGCAGTAACTGGCG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAGCTAAAATAGCTCCCGCTGCTTTCATGCTAACGCCTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTCAATATCGGCAATTGCCTGTAATATTGGGTAAACTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACCAAGACAACGAATTTCGTCGGGTTGGAATAGCCCG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CCACTAATGGATACGATGATGTTCTCAAATTCATCGA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATATGATCATCTATAATATTTAATATTTGTTTAATTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CTAATTCCTCCTTTGCTTCTGCCTTTTGATAGTAATAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAATGGAGTGTTGTGGATTTATCAATACTCCGGAATT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAAGATACAGAAATCAGATTAACTGTGATATGGAAAATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AATACTTTAGCAAAATATTCTTCTTGTTCTTTTGT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACTGCTTCAAACCAGTAAAACACCCTACCTATTGTTGA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCGAGTACATTCCGGTTCATATTCGCCGGAAATGGCC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCACAATCCCACCTTCCGGAACCGTCGCCCGGTGTCGG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATTTATTATAAAAATGTATATAATGAAGAATATTACTTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AGGCCGAAGCCGTCGGGTCGGTCACTGCCGTTGCAGCCAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CGGTAAGTGATTTTGCCGCTCTTGAAGCCTGCTTCAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCCGAACAGTTTCTTTTAGGCTGACCGGGCAGAACCA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCACGATTACATAAGTGGCCGTTAAAAAACCACATTTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCGAGCGAATTATGTGTGCTATATTGACGGCTTTTTCT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTTTTCCACATGTAGTCATATATCTTTGAGTACTGCAG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AATATTTCTTATATGGATTTATTTTCAATGGGGAATGG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAGTTTTTTTGATACGGTATTCCCTTGGGCTGGCATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TAAATAGGCAAATGAATCACGATAGTTAGGTGACGGAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATCAACACACCCATAATAGTAATACCTACAGGAAGTAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACAAACATCCAGACCCCATAAGGATATCTCTTAGCCC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GGAAATTCCATTAGCAGATTGTTCGTTCCTTCTTCATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAAAAGTAATTCGTATGGGTAATTTTAAATTTTATAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAATTTAACGTAACTAGTGAGCAGCTTTTAAATGCTTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GTAGTCAGTTGTCTGTCCGAGCAGGTTTATAAGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTCAAGGGATTCCAACTAAGGGATGTTTGCGCTGGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATGGAAGGTAACCTTCGCCGTCGCAGTTGGGGCAGTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AGCGCCAGCAACTGTTTCACGTATGTTGAAGTCTTTTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTTCCAAAAGCTTTCCGTGGAACAGTGCGACTGATTCT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CGGTTTCAAAGCTCGCGCCGGTAATAGGGTTAAACTGCTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAGGAAACGTGCTTAAAGACAAAAAGATTAAAATTTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAGCATATGGTGTTTACAAAGCCAAGGACAAGGTTA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GGTAGAAGTCGCCTGGTTTGAGTATTTCGAGCACT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATGACCGCCTTGTTTGCATTATATATCGCTGAGTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GTGCTTACAGGTACATCAACGCCGACGTGGTATATGA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACAACAATATGCGACTTTCCGAGCTGTCTTTTAACCTTC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATTATTGCTATAGTTGATTCTGATTGTGATTATGCAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACAGGCATCAGCGCAATTCTGTGACTGTTTTTCAGCCC
GTTACAATTACGTCCCGGTTATCAAGTGTGTTTGGCA

>NC_015565|4|4|804318-808973|CRT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAAGGGCAGAAAGGAGAAGAAAAATGTTAATTAAAACAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACGAAAGGTGGGTAACAAAAATGGCAAACAATAAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CATACTTAGCAGTACGTTGCTTATCACGCCGCCGTTTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CGGCTATTTGTACTTGTCTTTCGTATATCTGCGCCAGT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TAGTCTATTGTCATCGTACTCCCGCCACAGCTCCGCATAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAACTTAATCTCTCTCATCTTCTTTCCCTCCTATCT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAATGTTACTGGCTGAAACACTGCCCGGAAGCCAAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TATGGCGGGACACCACCATGCCAACGGCCATGTTTTGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GACAAAGACAGGTCAGACTTGGCAGCATCAATTAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTTCAAACTTATTCTTGCTCCCCGCCCGGTCTGATTC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCCCACCATAACAATGATTCTTTCCTTCAAAGGCA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCTAAAAGAATTATTATTCCTAATGTTATTTAGCTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATTCCAACTGCATAGCCGTCTTGCCTAGGCCTGTCCC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACCTCAACATAACACGTCTTAGGGCCTATATCTGCAATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATGATATTCCTACCGTATTAGCCAGCGTTGCAATGT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCTGTAGGAACCTGTATATCCGGTGGATTGCCTGGATG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCTGATATAACATATGGAATGTTGCAGGGGTGGAAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACCATCGGCCCGAAGGCCTAGGTTTCGTCCCGGAGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACTCCATATGGTCATTGGGGGCCGGTGTAGCAGTACA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCCTTTTCGTATGTGTCGATGTGGACGGAGCCTTCCAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAGCAAAATCCCAGGTATCTATGGCAGTAACTGGCG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAGCTAAAATAGCTCCCGCTGCTTTCATGCTAACGCCTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTCAATATCGGCAATTGCCTGTAATATTGGGTAAACTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACCAAGACAACGAATTTCGTCGGGTTGGAATAGCCCG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CCACTAATGGATACGATGATGTTCTCAAATTCATCGA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATATGATCATCTATAATATTTAATATTTGTTTAATTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CTAATTCCTCCTTTGCTTCTGCCTTTTGATAGTAATAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAATGGAGTGTTGTGGATTTATCAATACTCCGGAATT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAAGATACAGAAATCAGATTAACTGTGATATGGAAAATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AATACTTTAGCAAAATATTCTTCTTGTTCTTTTGT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AACTGCTTCAAACCAGTAAAACACCCTACCTATTGTTGA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCGAGTACATTCCGGTTCATATTCGCCGGAAATGGCC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCACAATCCCACCTTCCGGAACCGTCGCCCGGTGTCGG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATTTATTATAAAAATGTATATAATGAAGAATATTACTTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AGGCCGAAGCCGTCGGGTCGGTCACTGCCGTTGCAGCCAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CGGTAAGTGATTTTGCCGCTCTTGAAGCCTGCTTCAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GCCGAACAGTTTCTTTTAGGCTGACCGGGCAGAACCA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCACGATTACATAAGTGGCCGTTAAAAAACCACATTTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TCGAGCGAATTATGTGTGCTATATTGACGGCTTTTTCT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTTTTCCACATGTAGTCATATATCTTTGAGTACTGCAG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AATATTTCTTATATGGATTTATTTTCAATGGGGAATGG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAGTTTTTTTGATACGGTATTCCCTTGGGCTGGCATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TAAATAGGCAAATGAATCACGATAGTTAGGTGACGGAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATCAACACACCCATAATAGTAATACCTACAGGAAGTAA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACAAACATCCAGACCCCATAAGGATATCTCTTAGCCC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GGAAATTCCATTAGCAGATTGTTCGTTCCTTCTTCATA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAAAAGTAATTCGTATGGGTAATTTTAAATTTTATAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GAAATTTAACGTAACTAGTGAGCAGCTTTTAAATGCTTT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GTAGTCAGTTGTCTGTCCGAGCAGGTTTATAAGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTCAAGGGATTCCAACTAAGGGATGTTTGCGCTGGC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATGGAAGGTAACCTTCGCCGTCGCAGTTGGGGCAGTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AGCGCCAGCAACTGTTTCACGTATGTTGAAGTCTTTTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	TTTCCAAAAGCTTTCCGTGGAACAGTGCGACTGATTCT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	CGGTTTCAAAGCTCGCGCCGGTAATAGGGTTAAACTGCTG
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAGGAAACGTGCTTAAAGACAAAAAGATTAAAATTTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	AAGCATATGGTGTTTACAAAGCCAAGGACAAGGTTA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GGTAGAAGTCGCCTGGTTTGAGTATTTCGAGCACT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATGACCGCCTTGTTTGCATTATATATCGCTGAGTAT
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	GTGCTTACAGGTACATCAACGCCGACGTGGTATATGA
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACAACAATATGCGACTTTCCGAGCTGTCTTTTAACCTTC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ATTATTGCTATAGTTGATTCTGATTGTGATTATGCAC
GTTACAATTACCTCCCGGTTATCAAGGGGATTGAAAC	ACAGGCATCAGCGCAATTCTGTGACTGTTTTTCAGCCC
GTTACAATTACGTCCCGGTTATCAAGTGTGTTTGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015565.1\|WP_013809825.1\|819358_819733_+\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|376370
NC_015565.1\|WP_013809810.1\|798169_798949_+\|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_015565.1\|WP_013809809.1\|797090_798182_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_015565.1\|WP_013809815.1\|803220_804132_+\|type-I-A-CRISPR-associated-protein-Cas4/Csa1	cas4	pfam06023_cas4_CAS-I	gnl\|CDD\|283640
NC_015565.1\|WP_013809817.1\|809753_811244_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_015565.1\|WP_013809816.1\|809031_809757_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NC_015565.1\|WP_013809824.1\|819026_819329_+\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|376347
NC_015565.1\|WP_041275067.1\|815580_816486_+\|urea-ABC-transporter-permease-subunit-UrtB	unknown	unknown	gnl\|CDD\|200272
NC_015565.1\|WP_013809808.1\|795692_797075_+\|hypothetical-protein	cas8b2	cls000029_cas8b2_CAS-I-B	gnl\|CDD\|187796
NC_015565.1\|WP_013809823.1\|818303_818999_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	unknown	unknown	gnl\|CDD\|274567
NC_015565.1\|WP_013809812.1\|801360_802380_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NC_015565.1\|WP_013809806.1\|793934_794441_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
NC_015565.1\|WP_013809813.1\|802382_802649_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_015565.1\|WP_013809807.1\|794604_795564_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
NC_015565.1\|WP_095532128.1\|814240_815452_+\|urea-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|132448
NC_015565.1\|WP_013809822.1\|817552_818311_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	unknown	unknown	gnl\|CDD\|274568
NC_015565.1\|WP_013809826.1\|819732_821448_+\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
NC_015565.1\|WP_041275166.1\|816522_817593_+\|urea-ABC-transporter-permease-subunit-UrtC	unknown	unknown	gnl\|CDD\|132449
NC_015565.1\|WP_013809811.1\|798950_801296_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_015565.1\|WP_013809814.1\|802641_803217_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040

Protein	Function_ID	Function_description	E-value
NC_015565.1\|WP_013809825.1\|819358_819733_+\|urease-subunit-beta	gnl\|CDD\|376370	pfam00699, Urease_beta, Urease beta subunit. This subunit is known as alpha in Heliobacter.	5.97456e-67
NC_015565.1\|WP_013809810.1\|798169_798949_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	7.15985e-24
NC_015565.1\|WP_013809809.1\|797090_798182_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.59379e-47
NC_015565.1\|WP_013809815.1\|803220_804132_+\|type-I-A-CRISPR-associated-protein-Cas4/Csa1	gnl\|CDD\|283640	pfam06023, Csa1, CRISPR-associated exonuclease Csa1. CRISPR (clustered regularly interspaced short palindromic repeats) elements and cas (CRISPR-associated) genes are widespread in Bacteria and Archaea. The CRISPR/Cas system operates as a defense mechanism against mobile genetic elements (i.e., viruses or plasmids). Csa1 is part of the archaeal subtype I-A system. Cas1 has not yet been enzymatically characterized.	5.1124e-75
NC_015565.1\|WP_013809817.1\|809753_811244_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.69966e-26
NC_015565.1\|WP_013809816.1\|809031_809757_-\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.10343e-63
NC_015565.1\|WP_013809824.1\|819026_819329_+\|urease-subunit-gamma	gnl\|CDD\|376347	pfam00547, Urease_gamma, Urease, gamma subunit. Urease is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia.	3.62647e-68
NC_015565.1\|WP_041275067.1\|815580_816486_+\|urea-ABC-transporter-permease-subunit-UrtB	gnl\|CDD\|200272	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	8.15611e-138
NC_015565.1\|WP_013809808.1\|795692_797075_+\|hypothetical-protein	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	1.15625e-06
NC_015565.1\|WP_013809823.1\|818303_818999_+\|urea-ABC-transporter-ATP-binding-subunit-UrtE	gnl\|CDD\|274567	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	2.86521e-137
NC_015565.1\|WP_013809812.1\|801360_802380_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.37408e-94
NC_015565.1\|WP_013809806.1\|793934_794441_+\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.9258e-27
NC_015565.1\|WP_013809813.1\|802382_802649_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	5.04368e-19
NC_015565.1\|WP_013809807.1\|794604_795564_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	9.29893e-11
NC_015565.1\|WP_095532128.1\|814240_815452_+\|urea-ABC-transporter-substrate-binding-protein	gnl\|CDD\|132448	TIGR03407, urea_ABC_UrtA, urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_015565.1\|WP_013809822.1\|817552_818311_+\|urea-ABC-transporter-ATP-binding-protein-UrtD	gnl\|CDD\|274568	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	1.75206e-151
NC_015565.1\|WP_013809826.1\|819732_821448_+\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
NC_015565.1\|WP_041275166.1\|816522_817593_+\|urea-ABC-transporter-permease-subunit-UrtC	gnl\|CDD\|132449	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines].	7.78081e-156
NC_015565.1\|WP_013809811.1\|798950_801296_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	7.53636e-67
NC_015565.1\|WP_013809814.1\|802641_803217_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	6.73811e-36

>NC_015565.1|WP_013809815.1|803220_804132_+|type-I-A-CRISPR-associated-protein-Cas4/Csa1
MYFLSDEEKKHLLKNYLPRSRQADTAEELRGWNWHQPPLLPPYETKLGAYEIAGAYCPSNRDLYLRRVQKIKSLPSLAMIRGYFLHDVLVKELSRAKKIIYHRGVPGYKEIFNDLEQGQDYKLPDQFQVNKKDKLYLEKEADIIAKFERQRLAAKIHDVLVKQPYIGEDSLVNLAVPVVLEQKLDGSFLGMSSHLSVDAYTFSEPMVMDLKFGEKRKFHRLQTTAYALAMEAVYEFPVNLGCIVYAKIKDDRLIIEKDIHIIDDELRQWFIEERDEKLRMIEEEIDPGVKECPDSCHIRQLCY
>NC_015565.1|WP_013809814.1|802641_803217_+|CRISPR-associated-protein-Cas4
MLKLRVTDIKQYVFCPRIIYFTYVCPVDKKATRKMEYGKEAHVELDQLEKRRKFKRYNLSAAERKFHTQLFSERLGLEGKLDMHLVADGEIFPVEFKYTLRGPSLNHKYQLVAYAMLLEDIYNKPVRYGFLQLYPKGEVIPVEITPNARMFVKEIMQKIRAMVRNQIFPPTTLPKSRCIDCEYRNFCNDVR
>NC_015565.1|WP_013809813.1|802382_802649_+|CRISPR-associated-endonuclease-Cas2
MKTFVIYDIEEDRIRNKILETCRDYGLEHVQYSTFFGELNHNRREELKLRLKKTLGRKNGKILVFPVCDKDLKLLENICNFPELPPDA
>NC_015565.1|WP_013809812.1|801360_802380_+|CRISPR-associated-endonuclease-Cas1
MEHPSEVFVSNYGSFLGKKSERLVLKENGQTVLEVPFYELQNIIIETSGASISTDCIKECMQRGIPISFLSSTGKPYATIISPHLTGTVVTRRAQYEAFKDKRGVQMVKLFVEGKLKNQVNTLKYFAKYRKSADKELFNNVQSVIDKIETTAQELKEITGNCINDVRGQIMSAEGRAGNLYWQGIKLLTAGKIDFPGREHAGAADPMNSLLNYGYGILYGKVEKCLILAGLDPYAGFLHVDRSGKESLVYDFVEEFRQPVVDRVVVAMINKGIPIEMEDGQLSQKTRRDLAERIKERLDTAERFQGKKYRLQTIIQMQARRIATHLRGEARYKPYVSGW
>NC_015565.1|WP_013809811.1|798950_801296_+|CRISPR-associated-helicase/endonuclease-Cas3
MYLDDIKQALADVWAKSTDSSEKSGLSLFQHTENVIKQMGQFILLYHTELNQVAEMNMTRVLLYAALMHDFGKIHPGFQRMLRKGTRFGLRHELLSLAFLEFLKIPPEEKPYLASAIALHHKNWVFITNGDIIYYDRCFSVEEVNSVFRLVEGLKQHEINGLLLLLKNAGTYLLTVTGFCIEPYKFIENSITPSGIYRNLTLIDHFIGTFVKQGRRAGRQINRQVCHYATIARGLILSADHLASAKPMELTPGFTSAEQVLTALNLTDDSLHPHQKQLKEAATSKILIAPTGSGKTEAALLWAGSVREAKQTKGRLYFLLPYRASINAMANRLRRGFGEQSTAVIHGKTLIESYQQLMENGYTPDEARKLASYQESLARLNTTPIRICTPYQLVKTFFAPNGYEAMLCSALGAQLVFDEIHAYDTELTAMTVAAAKFMKHVLGAECLFMSATLPNHLKNILQEQFMLDEPVKPSGEWLASRVRHRLNLIDNHITSVNSIERIKQSAEQGSVLVVVNTVPRAVKVVEELNKVGLRDITLLHSKFCPRDRIDKERKLQPIEGKILVATQVVEVSLDIDYDTLFTELAPLESLLQRFGRVNRNRPLESKGVSTVNVFTEFANDNETSYRPYNKAHLCQVKKVLQDYLRENPGGVINETKIQDMLDASYPEVLKEDLAIKIKDRLERFDKSFVQELLPLGINEMGTIKNLREEWDNLFDGVEVLPAKYLDEARNMPNPLDVAQLLVPISRAQLQRLQRERKAWRDEEINQIITNCDYSYQYGLII
>NC_015565.1|WP_013809810.1|798169_798949_+|CRISPR-associated-protein-Cas5
MAGIDKVLKVKISAVTASFRLPLIMVGRLPTFVMPPPATIYGNLCAVLGEWFAPEGLEFAYTFTHQGIGEDVELAHVLEFASGRNDKKLGNLPKNVEGSINPQRRQFLFKPEMTLYLRGNSTLLERLHKGFMSPHFAYLLGRTQDLATCHSVEFIELATSDRAFYSHTILPWRLRQFVSVGEPVHMPESINYRCLREPVFERYLQITDKPLRIFGEGPEEDIIFRGEFSNLLVDQTEMKTFLGRDLCRGVWFHPVKGMG
>NC_015565.1|WP_013809809.1|797090_798182_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSFLSGLFLVNCPASALNNAGTITGTRNDNTVAVKQIKTKEGDYPYVSAQAVRYWWREALKDVEGWTPSPIFREGKIAYTDANPILYAEDDCFGYMRAQSTKEDAKKSREESNLLATATPVEVKALTRQSPLKVSTLVSISALKEITSDFGVMARHEGDPVPFEHQFYRTTLQGLFSLDFGMVGRFYHIDRTGFKHLDQPRIKLAQEQGLEEYDNGKAYQLSLEQRYQRINQLLQGFARINGGAKQSIHYTDVSPKFLIMAVAKGGNHLFATCVGATNKGLPVVKTEAIKEVARVFKDDIISGIYVGLPEGYLDEQRDKVKETLNEISSQNIYGKRKTFLGHPKEAIEEFLKDLGENKETWLE
>NC_015565.1|WP_013809808.1|795692_797075_+|hypothetical-protein
MCHETVKYTGEPFVDAGVAVMEHHLGKPCEDFKPEDLEKAARWLIKIYERKSLKGYLTIHFPNSGWCNATISKEKKAEYINKVLQAYNFEPISGRECVYCHRPAQFLADRQHIPMLTGASTIITSPGGVPGLPVCGYCLMAIQFYPLATLKCQGKPLFWWTPEPDLTYSLTGEYFREIEKLIDGGSDKLPNLSWPKTILLDTAQKVLASYGDDKPLADCIGLHVTNYGAGPDYHQYRLPKELLEFLKLVRVKDEAVRSAHTHIIETAWVKDKNNKKQAKSQEKETPSRRNKYFEALVEVFEQANWSEKTKEIVHNFYFHKKPETFQYNNFALCKLFLEKVAGMDKQRLETIKRIADQVTNTLIIGNNETKWLNSLFNHEHKFHEFMRYLIRVQKRLAEKGQVLSLDDILIMLDLSNEEDTVSKDFSLVRDLFLIRMLELVGKNRKDMLNELELTSDTETN
>NC_015565.1|WP_013809807.1|794604_795564_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MLINKFRLAKYEIDIAAGEEGWVLPPYKGSTLRGGFGNAFQRIACAQRHNKCIACLLKASCPYAYIFETSPPPGAKALRNYEAIPRPFIIEPPLETKTHYAPGEKLTFNLILIGKAIEFLPYFIVSFKELGKLGIGKGRKPFELQEIRAVHPLKNECEVIYTGPDYLIKPVKLEITGEEILAQSPAAARQVKLNFLTMTRLKFADEFVERIEFHILIRNLLRRISSLAYFHHGWEVAADFNGLIERAADIEILSDKTRWVDWERYSSRQDNKINLGGVAGEVTYQGDLTEFMPLLLLGQFTHVGKAAVFGMGGYEVRIN
>NC_015565.1|WP_013809806.1|793934_794441_+|flavin-reductase-family-protein
MTTDVKYNEYAKELLEQLPKGAFLTVKAGDRLNTMTIGWGAPAFIWQKPIFLVLVRYSRYTYQLLEQAREFTVSIPINKDMKKALAFCGTKSGREVDKFKEANLTAEPAKVVNTPIIGECDLHYECKVVYQQAMEPAILADHIKTSAYPKGDYHVMYFGEIVACYKKE
>NC_015565.1|WP_013809816.1|809031_809757_-|ATP-binding-protein
MSQLLSDLCRQLRLAYVSEAVEEKASPELCTLITEVLKAEIEGRKRMKLNRLLHRAGFPQIKTLEGYSFEPIAFPASCNQGKLVSLDWIAQKENVLMLGAVGTGKTHLAIALGVEACRKGKIVRFFRVSDLVSVLQQKHAEGTLTKFRKELLKADLLILDELGYVPFHQTGSELLFHVIADCYERQSVIVTSNLEFGQWSSIFGDTKLTAALVDRLVHHAHILAFSGDSYRLRHALGNIQN
>NC_015565.1|WP_013809817.1|809753_811244_-|IS21-family-transposase
MLTVPQQEYIRLMREIEGCKIAEIARRTGVSWITAKKYADRDNWSQKTGKKHHKRPIIDPFKEIIDTWLTEDQCIPAKQRHTAAAIHRRLVREFNFKGSDRTIRDYVSKRRKELKLEEAQAYQRLEHPGGEAQVDFCTIQVSKNAKLMEYKLLVASFPYSNASFVYPVPKENQECFLEGLKRLFDQMGGVPKRIWFDNLAAAVVHIEKDGQRKCTDAFLRFVAHYRFEPVFCNPASGNEKGHVENKVGYSRRNWCVPVPIFTDHETLASELVSCALADRKRKHYAKGVTIEELWQEESAKLLVLPEEPFQVFRLEQAKVNNYGEVRFDGVSFPLFEVHPEEKVILKIYWDHIEVLNQNYKLIGSFPRPYTHKTADVPWDKVIHNLKRKPRSAPYSQFVRMMPSIVQEFILLDDLEIRRNRLYWLSNWLKQYSLDEVAMVLKQEDWNQAMFSDVVTHRLYALRHPIVATDEISIPGTPTYTPDLTIYDRLHKGGRSE
>NC_015565.1|WP_095532128.1|814240_815452_+|urea-ABC-transporter-substrate-binding-protein
MVLVTMLLLAGCGGSGSPKKEDTVSNQKAGEGETIKVGILHSLSGTMAISEVSVKDAELMAIEEINASGGLLGKKIEPVIEDGASDWPTFAEKAKKLLQQDKVAVIFGGWTSASRKAMLPVVEENNGLLFYPVQYEGLESSPNIFYTGAEPSQQIVPAVSWLLENRGKKFYLLGSDYVFPRTANKIIKAQLKAKGGEVVGEEYTPLGHTDYSTIINKIKAAKPEIIFNTLNGDSNVAFFKQLKDAGITSKDITVMSVSIAEEEIRGIGPQNIAGHLAVWNYFQTTDTPENKEFVKKFKTKYGQDRVTDDPIEAGYFGVYLWAEAVKKANSTDVGKVKEAIKTVEFQAPEGLVKINGENQHTWKTVRIGEVQPDGQFKELWNSGGPVKPDPYLKGYEWAKGLSN
>NC_015565.1|WP_041275067.1|815580_816486_+|urea-ABC-transporter-permease-subunit-UrtB
METFVLQVFNGLSVSSILLLVALGLAITFGLMKVINMAHGELIMIGAYVAYVTQLWFAKYLDEKFLGLYFVIALPLAFLVAGLFGLLLEFVLIRFLYGRPLDSLLATWGASLILQQLARNIFGAPNVDVISPQWLNGGIMVMEGLQLPYKRLFIICLVTICIIGMYLYLYRSASGRRIRAVMQNREMAACLGINTRRVDAYTFALGAGLAGVAGCALTLLGSIGPSLGTYYIVDAFMVVVLGGVGKLVGTVLGALSIGMLNTALEFGTTASLGKVLVFALVIAFLQWKPSGLVTVRTRALD
>NC_015565.1|WP_041275166.1|816522_817593_+|urea-ABC-transporter-permease-subunit-UrtC
MSTREKWLFGILAITLFVVAPLLFSDFRLNLMGKFLAFAILAIALDLIWGYTGILSLGHGVFFGLGAYAMGMYLKLEAAKGHLPDFMSWSGLTELPWFWKPFQYPGFAILMAVAIPMVLALVLGYLTFRNRIHGVYFSVMTQALALIFVILFVGQQPYTGGTNGITDFKTIFGFSLTEPAVKMSLYLVTAFSLALVYFLCRWLTNARLGRVLVAIRDGENRVRFSGYNPVVYKLFVFVISAGLAGLAGALFAPQVGIVSPALMGIVPSIEIAIWVAVGGRGTLIGAVIGSILVNGAKSLLSETFPDVWLYFLGILFVSVVLFPNGIMGLFAKLSTLQRKEVKAYGRNNPVFGKCHR
>NC_015565.1|WP_013809822.1|817552_818311_+|urea-ABC-transporter-ATP-binding-protein-UrtD
MAGTILYLENVTVSFDGFKAVDSLNTYVKYGELRFLIGPNGAGKTTLLDVICGKVKPATGRVVFKEDIDIGSKQEYEIVQLGIGRKFQAPSVFGNLTVFENLELAIQKERGIWASLFGKLTSEQRDKIFAILETIGQLEKAHEKAETLSHGEKQWLEIGMLLVQEPEMLLLDEPVAGMTKKETEKTGELLRAIAKDRSVLVVEHDMEFVRNFAEKVTVMHEGKILCEGSMEQVQSDPRVVEVYLGRGGDSHA
>NC_015565.1|WP_013809823.1|818303_818999_+|urea-ABC-transporter-ATP-binding-subunit-UrtE
MLKVEGLQTYYGESIILRDVDLNVPPGKVVCLMGRNGVGKTTLLKSIMGLLKPRKGKIYFQDKEITATTPDQRAKGGIGYVPQGRDIFPQLTVEENLLLGLEALQDRNAKIPAEIYEMFPVLKEMLGKRGGDLSGGQQQQLAIARALIGKPKILLMDEPTEGIQPSIVLEIAKVIKAIREREDMSILLVEQYLEFVLDLADYYYIIEKGSVVSEGAITELNDSIVREYLTI
>NC_015565.1|WP_013809824.1|819026_819329_+|urease-subunit-gamma
MRLTMREQEKLMIFLAGELARQRKNRGLKLNYPEAVALITSAIQEGARDGKTVAELMQLGTQILTKEDVMDGVDEMIHEIQVEATFPDGTKLVTVHNPIR
>NC_015565.1|WP_013809825.1|819358_819733_+|urease-subunit-beta
MKPGEYILGAGEIEANKDRKTVVVAVANTGDRPIQVGSHFHFFEVNKALIFDRDKAFGMRLNIPAGTALRFEPGEEKEVTLVEMGGKQTVYGLNGLTNGSIRSQTQLAKSLAKAAELAFKGVNI
>NC_015565.1|WP_013809826.1|819732_821448_+|urease-subunit-alpha
MTLKMTRQEYADMFGPTVGDKVRLADTDIIIEVEKDYSVYGDECKFGGGKVIRDGMGQTPNATRAEGALDLVITNALILDYWGIVKADIGIRDGKIAGIGKAGNPNLMDGVDGNLIIGASTEVVAGEGLIVTPGGVDAHIHFICPQQIEVAIASGITTMIGGGTGPATGTNATTCTPGAWNIHRMLEAAEQFPVNLGFLGKGNSSFEKPLIEQITAGAMGLKLHEDWGTTPVAIDTCLKVADAYDVQVAIHTDTLNEAGFVEDTITAINGRTIHTYHTEGAGGGHAPDIIKIAAEPNILPSSTNPTRPYTVNTIDEHLDMLMVCHHLDSKVPEDVAFADSRIRAETIAAEDILHDLGVFSMISSDSQAMGRVGEVIIRTWQTADKMKKQRGPLPEDKGNDNFRAKRYIAKYTINPAITHGISDYVGSIEIGKLADLVLWQPKFFGVKPEMVIKGGMIAFSQMGDANASIPTPQPVISRLMFGALGRAKYTTSLTFVSKAAYDAGIKEQLKLEKQVVPVKNCRSVSKSQMIHNNKTPEILVDPETYEVRVNGELLTCGPAKELAMAQRYFLF

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Crispr_ID: NC_015565_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015565_5

1966544-1966648

Orphan

Consensus_repeat	Method
AGCCGGATGCTCTACCGTTGAGCTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015565_5

>merge|NC_015565|5|1966544-1966648|CRISPRCasFinder
AGCCGGATGCTCTACCGTTGAGCTATAGGCCCAATTTGGCTCCCCGAGTAGGATTCGAACCTACAACCTACCGGTTAACAGCCGGTTGCTCTACCGTTGAGCTAT

>NC_015565|5|5|1966544-1966648|CRISPRCasFinder
AGCCGGATGCTCTACCGTTGAGCTAT	AGGCCCAATTTGGCTCCCCGAGTAGGATTCGAACCTACAACCTACCGGTTAAC
AGCCGGTTGCTCTACCGTTGAGCTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015565.1\|WP_003544288.1\|1978916_1979804_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NC_015565.1\|WP_003544326.1\|1954988_1955627_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319797
NC_015565.1\|WP_003544302.1\|1969831_1970839_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|234934
NC_015565.1\|WP_003544293.1\|1976004_1976640_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|341387
NC_015565.1\|WP_013810415.1\|1972422_1975068_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NC_015565.1\|WP_013810417.1\|1976839_1978924_-\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925
NC_015565.1\|WP_013810410.1\|1960434_1962222_+\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NC_015565.1\|WP_003544311.1\|1963418_1964111_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|378972
NC_015565.1\|WP_003544315.1\|1959922_1960387_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NC_015565.1\|WP_003544304.1\|1967832_1969635_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_015565.1\|WP_003544309.1\|1966732_1967836_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236413
NC_015565.1\|WP_013810416.1\|1975160_1976018_-\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|377080
NC_015565.1\|WP_013810414.1\|1971561_1972125_-\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|224431
NC_015565.1\|WP_041275131.1\|1956490_1957702_-\|DDE-transposase	unknown	unknown	gnl\|CDD\|376573
NC_015565.1\|WP_013810412.1\|1964258_1966163_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_015565.1\|WP_003544321.1\|1958390_1958540_+\|DUF1540-domain-containing-protein	unknown	unknown	gnl\|CDD\|377869
NC_015565.1\|WP_003544319.1\|1958649_1959138_+\|hypothetical-protein	unknown	unknown	unknown
NC_015565.1\|WP_003544316.1\|1959197_1959611_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378759
NC_015565.1\|WP_013810413.1\|1970848_1971457_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_015565.1\|WP_013810411.1\|1962309_1963428_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614

Protein	Function_ID	Function_description	E-value
NC_015565.1\|WP_003544288.1\|1978916_1979804_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NC_015565.1\|WP_003544326.1\|1954988_1955627_-\|HAD-IA-family-hydrolase	gnl\|CDD\|319797	cd02616, HAD_PPase, pyrophosphatase similar to Bacillus subtilis PpaX. This family includes Bacillus subtilis PpaX which hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr (P-Ser-HPr) dephosphorylation by the bifunctional enzyme HPr kinase/phosphorylase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.24652e-74
NC_015565.1\|WP_003544302.1\|1969831_1970839_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|234934	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NC_015565.1\|WP_003544293.1\|1976004_1976640_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|341387	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.704e-66
NC_015565.1\|WP_013810415.1\|1972422_1975068_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NC_015565.1\|WP_013810417.1\|1976839_1978924_-\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0
NC_015565.1\|WP_013810410.1\|1960434_1962222_+\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NC_015565.1\|WP_003544311.1\|1963418_1964111_-\|SAM-dependent-methyltransferase	gnl\|CDD\|378972	pfam12847, Methyltransf_18, Methyltransferase domain. Protein in this family function as methyltransferases.	8.30681e-82
NC_015565.1\|WP_003544315.1\|1959922_1960387_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	4.16559e-89
NC_015565.1\|WP_013810414.1\|1971561_1972125_-\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|224431	COG1514, LigT, 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis].	9.64135e-55
NC_015565.1\|WP_003544309.1\|1966732_1967836_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	0
NC_015565.1\|WP_013810416.1\|1975160_1976018_-\|kinase/pyrophosphorylase	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	7.37592e-149
NC_015565.1\|WP_041275131.1\|1956490_1957702_-\|DDE-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.51192e-16
NC_015565.1\|WP_013810412.1\|1964258_1966163_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.68284e-67
NC_015565.1\|WP_003544321.1\|1958390_1958540_+\|DUF1540-domain-containing-protein	gnl\|CDD\|377869	pfam07561, DUF1540, Domain of Unknown Function (DUF1540). This family has four conserved cysteines, which is suggestive of a metal binding function.	6.37712e-07
NC_015565.1\|WP_003544304.1\|1967832_1969635_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_015565.1\|WP_003544316.1\|1959197_1959611_-\|hypothetical-protein	gnl\|CDD\|378759	pfam11906, DUF3426, Protein of unknown function (DUF3426). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.	0.00124787
NC_015565.1\|WP_013810413.1\|1970848_1971457_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	6.08942e-41
NC_015565.1\|WP_013810411.1\|1962309_1963428_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	2.45727e-55

>NC_015565.1|WP_013810412.1|1964258_1966163_-|methyl-accepting-chemotaxis-protein
MFHSVKTKLLIPLVVLIFISLVLSFMLSYSRMRSAILDQEQVTYRNMESIVRNDLEAVFTSTRMGLASVVNMPEVQQAFAQRDREKLLQLTMPIFAEAKKEGIEQFQFHLAPAISFLRLHQPAKYGDDLSSFRATVVQCNNTKQTVAGLEEGKGGFGFRVVTPVFYQGRHVGSAEYGMGFNNRLLLKWQKQIGGDFFMYPYASSGVAWAKIDKDKPLAGTAEKDELKVPVEEIKAAMSGKGFRTVYLQNGAVAAVIIPVFDYSGKPISYVKANLDRTKVLNELTKVLRDSIIHLVLSVLVMGLIMYLLIGKILKPLDKLTGEIAVVAQGDLTRDFHIQGHDEIARLGQKFNTMLLNFRQLIGETVTVANKLKGSSESLSRSSEETSASVQEATEQIDKLAYSLNDLGNIAQDTAQYSQRVAQAAEEGQQAVQQAINQMTVLHHMVEGLAADTGGLGYKIEDINKFVQLIGDIADQTNLLALNAAIEAARAGEHGQGFSVVAQEVRKLADRSNQAARDVKQIIKEISEQSENVICSMDAGLNEVKTGRALIERTGEKFNHIRDLVDSLVQQSQAVAAASAQANLSGSEIAAATQQQSAAVQQVAGEAHLLNQLSQDLLDQIGKFKSNASADNQPA
>NC_015565.1|WP_003544311.1|1963418_1964111_-|SAM-dependent-methyltransferase
MIKISDRLKLLAGYVPPGSIMADIGTDHGYLPVYLIQQGICPRAVAADINQGPLQAARANVTQHGVADLIDLRLGNGLQVLDPGEVDTIVIAGMGGGTIRDILSDAPAVATAARRLILQPMADEAELRQYLVQNGWTIVDEDMLLEDGRLYIIVVAERGAERMPAPILLELGPRLVEKKHPLLPELINRLTAKYEKVLTGLAKSSQPEAKEKADRIREKLVHLKEVGTCL
>NC_015565.1|WP_013810411.1|1962309_1963428_-|Nif3-like-dinuclear-metal-center-hexameric-protein
MPVTGQDLSNIIEELAPRRLAEDWDNCGWQIGDPRAAVQRVLLALDVDSAVVKEAKEKQVNLIISHHPLFMKGVKSIRMDEPKGALVIELIKNNIGVYAAHTNLDSAAAGVNAVLANRLNLKDIEILHPSGVEKYNKLVVFVPVAEADDVSRAITQAGAGWIGNYSDCTFRVQGTGTFRPLAGTNPFIGQQGQLEQVEEIRLETIVPVSKVSAVIKAMLKAHPYEEVAYDLYPLDNRVHTQGLGRLGMLPEAKSFADLVIQVKEALGVASVRVGGSMWKDVRRVAVCGGSAADMWPLAAAKGAEVFITGDVKYHTAQDMIAAGLNFIDAGHFATEYLIVPALQDMLVAACQEKNLAVEFMVTKRQSDPFMVL
>NC_015565.1|WP_013810410.1|1960434_1962222_+|oligoendopeptidase-F
MITNIKNRDEIEDKYKWDLGAMYKDPAEVDQDLARIKELLEQFKGFSGKLNDKETILQALILQDQSDQLMEKCFTYAHMKLDEDNSNSAALALFDRVKSLYVTYNETTSFFIPELMKLDYSVLESYAQDERFKDYRHFIKEIGRNKEHVLSDAEEKIISAFGEVAGAPKNIFQILNNADLKFGEVKDENNQPVQLTHGRYNKLIQSKNREVRKSAYNELYRVYRSFKNTIGQTYINSVKKDCLYARLRKYNSALEASTFADNVDVAVYNNLIKTIRDNVSLLHRYIDFRKQVLQLPELRMYDLYVPLVTELDKKYSYEEAVDIVLKGLAKLGDQYISDLKQGLAGGWVDVYETPGKTSGAYSTGAYGYHPYILLNFNHTINDVFTLAHEAGHAMHTFYSHKNQPYRNASYTIFVAEVASTLNENLLIKYLLEQTNDNKEKLFLLNYNLEQFRTTVFRQTMFAEFEKIVHEQVEQGVSLTPDLLCEIYYDLNKFYYQGVTMDDEIALEWARIPHFYNAFYVYKYATGFSAAVALANGILTGGQEALARYLEFLASGGKDYPIELLRQAGVDMATPKPIEDCLKSFAENLQLATKLV
>NC_015565.1|WP_003544315.1|1959922_1960387_+|ribonuclease-HI
MKDVVIYTDGACSGNPGPGGYGVVLLYQGHRKELSGGFRDTTNNRMEILAAIVGLEALKESCNVTVYTDSQYLYNAIEKGWAKKWRANGWMRNKKEPALNPDLWDRLLKLMERHNVKFVWVKGHAGHPENERCDQLAVAAAKQPNLPPDIRTTP
>NC_015565.1|WP_003544316.1|1959197_1959611_-|hypothetical-protein
MKYGKLVALAAVIAMLVFLQGCAAKQVEKPVKVDTIVNKISIESLVCRQEANWLRVTGNIKNNSEYPVTSVEGQLTLNGGGGTPFDSRLIDLTQGKRLEPGEVLTFDSTFDYGKKTIPQLTVDAKITRLKVLPKPQP
>NC_015565.1|WP_003544319.1|1958649_1959138_+|hypothetical-protein
MSDQVEVKGGMGMMPGHEHMPMMMVPTLMQRLAQLLHRPISVFLKGEQEAPVTGTLHAVGQDYLELHNGTNNNTQVTIIPLWSVLAVTATGAMGDVCPPPTGYPTAPIMGPGPGMPGCPMPGMPECPMPGMTGGMTGGMPGMPGMPGMSPMSVKDAKKEENK
>NC_015565.1|WP_003544321.1|1958390_1958540_+|DUF1540-domain-containing-protein
MPTIKCTVTECQYNSNVMCDAPMIQVNRTRTEQSSTSEETQCDTFKPKA
>NC_015565.1|WP_041275131.1|1956490_1957702_-|DDE-transposase
MYILQQNLFSFEQWLEIESEYRLEPFFSVLDLRPYSQALCSDTKRGRKPENREAILRALLVAPFENISEFTALRERLVSDIRFRYQCGFELAKRVPSISTFSRVFGQIMEKEIAQKLFNDLVQQCLDEKIIVADTIAIDSTAIDAYEKKQPKSKSQETGNATWGAKYDTFRNKITWFGYKIHLAVDTSSELPIALEVTPANINDGDMGPTLIEKVAAQIPEGRLKYVIEDSGYDQQKNYEAAKAQRAQAIIPLNLRNAQEPPEGFSFNGTPKCSMGYEMVYWGCDKNFLKFRCPHALGKVDCPNGMAWCSSSNYGMVVKINVKDDLRRFSLPHRGTKRWEELYDKRTSVERCNSRLKENLTANDLHIRGIKKVTAYIYLNAIVLLATALASKKINCSPKQKVA
>NC_015565.1|WP_003544326.1|1954988_1955627_-|HAD-IA-family-hydrolase
MTIKTVLFDFDGTLADSLPLIRRTYQRVFDQMNVPWDDVKVMKTVGLPLRQIAIKFVGEERHTEFFQLYQHYYAIEHDNMTRAYPGTLEMLADLKGNGCRMGVVTSKSHRVVMRSINFLGLERYFDVFIGAEDVTKHKPQPEPILKALELMGEPAATAAYVGDSPFDIMAGKRAGVVTIGVTWGISDRDELVGHEPDYILDTWADLVKIIQP
>NC_015565.1|WP_003544309.1|1966732_1967836_-|RNA-polymerase-sigma-factor-RpoD
MRDEIKGVKVEKVKEMIEKGKKRGSLTYGEIMDSLQGAELTAEQIDDIYEQLAAMGIEVVPEVTDLEPLEVDDAADTPTEDVEIDLSIPEGIGIDDPVRMYLKEIGRVPLLSPEEEVELAKRMEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMNISGDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDADARAPAEEASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYLD
>NC_015565.1|WP_003544304.1|1967832_1969635_-|DNA-primase
MSGRIPDEVIEDIRQKSDIVEVVSRYISLEKRGRNYVALCPFHQEKTPSFNINPEKQIFHCFGCGVGGEVFKFLMLMEGLSFPEAVRLQGAKVGVVIPEQLSPRDLARRSKQQRALQIYALARDFYRALLSRDVGAKAVEYLAGRNLSETVRETFQLGYAPEGWDNLTKFLTAKGISVDELVKLGLAQSKAPGRCYDRFRNRIIFPIWDPQGRVVGFGGRTMGDDLPKYLNSPEGEYFNKGQLLYGLHLARRGIREQGYAVLMEGYVDVVSTYQHGVTNAVASLGTAFTREQGKLLMNYTHQVVIAYDSDSAGVKAAVRAAEILQELGGQVRIATIPEGKDPDEFIQKYGQPGWADVIKNAVSLIQFKLLQAVKQYGLREKKKILLEVLPNLAAVASPLELEEAIQQTATVLQVNWETVLAEVKKFKRNSRKTTPVWDKTVKNSHNIPSNANPAPKDARSNAETGLLRLALEHQDIVNRIEAELGREFFQNPDYQVIFSAILELGAQVSAARLFDKLKEPQQKVLSELLVQEIPGENLDQIFNDLVSTIKRASGKARLEELLMQLAVAEKAGNTERVLRLRQEINFNIMKSEGPERGVAT
>NC_015565.1|WP_003544302.1|1969831_1970839_-|deoxyguanosinetriphosphate-triphosphohydrolase
MDIRQQTEELERKLLSPYACCSADSKGRERPEEPCPVRTVFQRDRDRIIHCKAFRRLKLKTQVFIIPEGDHYRTRLTHTLEVAQIARTCAKALRLNEDLTEAIALGHDLGHTPFGHAGEQVLAKVYSPDFKHNRQSLRVVDLLEGQHGLNLTWEVRDGILNHTGPNMPATLEGQIVKIADRIAYINHDIDDALRAGVLKEQDLPRDCLEILGFRHSERINTMVIDLIRASTGRPEITMSREVRQAMEKLRNFMFDHVYIGSEAKTEENKARHVVESLYFYFLEHPERMPGDILNREEPEGTPRLVADYIAGMTDRYAVAEYKKIFIPRGFPLHKL
>NC_015565.1|WP_013810413.1|1970848_1971457_-|flavodoxin-family-protein
MLILGLNGSPNAEGNTSFMLKEALQAAAETGAETRLINVAEIVVTANQLFCDACTTPCAGVCYQDTPLEDLLNLIKQADGIIMGSPVYFGTIASPMKLLWDKSRALRKEKALVDVVGAAISVGGSRFGGQETTVKALQDIMLVHGMILVGDGAYNFDAGHLGASAQRPAAQDPDAVKRCRILGHRVAEVARATVALRQRKKG
>NC_015565.1|WP_013810414.1|1971561_1972125_-|RNA-2',3'-cyclic-phosphodiesterase
MQNLRLFIAIDVPDSLKNSLTELQRTIFADSSVKLVEQQNLHLTLKFLGETPGDKCPDIVQAMQQTVIGCPPFQLRLHGLGIFPTRGNPKVVWVGIGGARGKLITLQQNLEQNLAGFGFPVEGRKYSPHLTLGRLREPLNLNQLQTNIGRYREQEFGAWQVSAIKLMQSTLTKAGPIYKVLATIPLG
>NC_015565.1|WP_013810415.1|1972422_1975068_-|pyruvate,-phosphate-dikinase
MAATKYVYTFSEGKAEMKDLLGGKGANLAEMTNIGLPVPPGFTITTEACKEFYKAGRNFPAGLEQEVEEKVAWLEQTLGKKFGDPNGPLLVSVRSGAVISMPGMMDTVLNLGLNDQTVIGLAASSGNPRWAYDCYRRFIQMFGNVVLGIEHHRFEAVLEDQKYKAGVKYDNQLTAEDWQEVIKHYKTIVRKETGKDFPQDPMEQLYKAIYAVFNSWENDRAIVYRKIHKIPDDLGTAVNVQAMVFGNMGDDCGTGVAFTRNPSTGEKVLYGEFLTNAQGEDVVAGIRTPQPIAKLEEEMPEVYRQFAQTCALLEKHYKDMQDIEFTIERNKLWMLQTRNGKRTAQAAIRIAVEMVEEGLISKETAIKRVDPMQLNQLLHRRIDPNAKLEVIAKGLPASPGSACGAVVFDADLAEKLGEQGKKVILVGTETTPDDIHGMVASQGILTSRGGMTSHAAVVARGMGKPCVCGCESIKIDYENKQFLVGQLVVKEGDVISIDGSTGQVMLGEVPMIDPELSPEFQKLLTWADEIRTLGVRANADTPEDAAKAREFGAGGIGLTRTEHMFMAQDRLPIVQEMILASTLEEREAALAKLLPMQEGDFYGILKAMAGLPVCIRLLDPPLHEFLPNAEELAVEITRLKLTNSDQSEIKAKEDLLRKVRSLSEFNPMLGHRGCRLGITWPEVYAMQARAIFQATARLVKEGYQVEPEVEIPLVIEVKELAYLRQVVERVAQEVKEATGVDFHYTVGTMIEVPRAALLADEIATQAEFFSFGTNDLTQTTLGFSRDDAEGKFMQPYLEKKILTENPFMVLDRKGVGKLMQWTVENARRVKPELIIGICGEHGGEPSSIEFCHLIGLDYVSCSPYRVPIARLAAAQAKVNND
>NC_015565.1|WP_013810416.1|1975160_1976018_-|kinase/pyrophosphorylase
MKGPEEGLAIIAPKDDHPIVYIVSDSIGETAELVAKAAVSQFNSGNVEIRRVPYVNDPQDIVDVVDEAQGNNCIIAFTLVLPELREVLVMEADRHHIPTVDIMGPFLDALTLITSGPPKLEPGLVRKLDEEYFRRVEAIEFAVKYDDGKDPRGITRADIVILGVSRTSKTPLSMYLAHKRIKAANVPLVPEVAPPQEIFNLPPNKVIGLTIKPQQLNIIRTERLKTLGLTSHADYASHERILKELEYAEGIMKRIGCPIIDVTNKAVEETASKVLEIYYRSGRHR
>NC_015565.1|WP_003544293.1|1976004_1976640_-|helix-turn-helix-transcriptional-regulator
MELSKRQEAILEIVKKNGPITGEQIAEQLNLTRATLRPDLSILTMAGLLEARPRVGYFYSGKTADRVLADKITRIKVGDVKSVPIVVPEQCTVYDAVVTMFIEDVGTLYVVREGGLLEGVVSRKDLLKSTLGGQDIHKLPVGVIMTRMPNVHTTDVNDSVWLAAHKLLTHEVDSLPVVKTVPGTKEKQYEVVGRFSKTNVTRLFVELGEGS
>NC_015565.1|WP_013810417.1|1976839_1978924_-|glycine--tRNA-ligase-subunit-beta
MAKDFLLEIGIEEMPARFLAPALAQLKELTAKTLQEQRIVYGDIATYGTPRRLVLYVKDAAEDQAPLEKEVKGPAKKAAFDIDGNPTKAIQGFMRSQGVSLEDLVVRHIGQVEYLYAVKREAGRPTADVLAEICPALITGLHFPKPMRWGSLEMRFARPIRWLLALFGDDVVPFELANLKSNRITYGHRFLTTGDLPIANPADYFDRIRKAYVLIDPVERKEVIRQQVQELAAAEGGQVEMDEDLLDEITNIVEWPTALCGSFDRDYLKLPAAVLVTPMREHQRYFPVLGPDGQLLNKFIAVRNGTKAYLDIVTAGNEKVLRARLADAAFFFEEDLKKPLASKVDGLKKVVFLEGLGTVADKVDRIGALADHLAELLGADEQQQEKIQRAALLAKADLVTNMVYEFPELQGVMGREYALRNGEDPDVAEAIFQHYLPRFAGDQLPNTLAGRVLSLADKMDTIVGCFAIGIQPTGSADPYALRRQALGICHIITEGNLHLSLKQMIEWAYQGYSAEVELKYTLPQVTGEIEEFFKQRIKGMMSDRGLSYDTVEAVLAVGFDDITDAFARGAALTSFRDQPAFNALMTAFNRANNLAKNATGGAINEAYLEHPAEHELYRQLTALTQKVQPLIQSRDYVAALREIAAIQAPLNEFFEQVMVMVEDERIKTNRLALLKNLVDLSKTVADFSKVVLEG
>NC_015565.1|WP_003544288.1|1978916_1979804_-|glycine--tRNA-ligase-subunit-alpha
MNFQELILTLNKFWAEQNCIILQPYDIEKGAGTMNPATFLRALGPEPWRVAYVEPSRRPTDGRYGENPNRLQHYFQYQVILKPSPDDVIPIYLDSLRAIGIDPDRHDIRFVEDNWESPTLGAWGLGWEVWLDGMEITQFTYFQQCGGIDCHPVSAEITYGLERLAMFIQQKDSVFDIVWVDDITYGDVYHQNEVEQSGYNFEAANTDMLFDLFDMYETEANRILEKGLVLPAYDYVLKCSHTFNLLDARGAISVSERQGFIARVRQMARACAQAYVEQREKLGFPLLKKGGRING

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015565_1	1.37\|587052\|38\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	587052-587089	38	MK113950	Phage 5P_2, complete genome	4391-4428	0	1.0
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP015797	Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence	17893-17927	6	0.829
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP015781	Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence	17919-17953	6	0.829
NC_015565_2	2.38\|592377\|33\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	592377-592409	33	MK574078	Pseudomonas phage KP1, complete sequence	35099-35131	6	0.818
NC_015565_2	2.17\|590982\|33\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	590982-591014	33	NZ_AP018204	Leptolyngbya boryana NIES-2135 plasmid plasmid1 DNA, complete genome	118049-118081	7	0.788
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NC_019928	Helicobacter phage KHP30 DNA, complete genome	11164-11198	7	0.8
NC_015565_4	4.30\|806513\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	806513-806547	35	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	104865-104899	7	0.8
NC_015565_4	4.30\|806513\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	806513-806547	35	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	104865-104899	7	0.8
NC_015565_1	1.2\|584716\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	584716-584749	34	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	84223-84256	8	0.765
NC_015565_2	2.8\|590382\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	590382-590416	35	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	73117-73151	8	0.771
NC_015565_2	2.8\|590382\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	590382-590416	35	NC_011247	Borrelia duttonii Ly plasmid pl165, complete sequence	111445-111479	8	0.771
NC_015565_2	2.17\|590982\|33\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	590982-591014	33	NZ_CP007453	Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence	350432-350464	8	0.758
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NC_019688	Clostridium perfringens plasmid pNetB-NE10, complete sequence	35679-35713	8	0.771
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP025502	Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence	67812-67846	8	0.771
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NC_012226	Brachyspira hyodysenteriae WA1 plasmid pBHWA1, complete sequence	5055-5089	8	0.771
NC_015565_3	3.8\|622458\|37\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	622458-622494	37	MK448767	Streptococcus phage Javan467, complete genome	10797-10833	8	0.784
NC_015565_3	3.8\|622458\|37\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	622458-622494	37	MK448942	Streptococcus phage Javan448, complete genome	10796-10832	8	0.784
NC_015565_3	3.8\|622458\|37\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	622458-622494	37	NC_004586	Streptococcus pyogenes phage 315.3, complete genome	10902-10938	8	0.784
NC_015565_3	3.8\|622458\|37\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	622458-622494	37	MK448964	Streptococcus phage Javan502, complete genome	10776-10812	8	0.784
NC_015565_3	3.8\|622458\|37\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	622458-622494	37	MK448943	Streptococcus phage Javan450, complete genome	10797-10833	8	0.784
NC_015565_3	3.8\|622458\|37\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	622458-622494	37	MK448786	Streptococcus phage Javan509, complete genome	10797-10833	8	0.784
NC_015565_3	3.8\|622458\|37\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	622458-622494	37	MK448963	Streptococcus phage Javan498, complete genome	6419-6455	8	0.784
NC_015565_5	5.1\|1966570\|53\|NC_015565\|CRISPRCasFinder	1966570-1966622	53	MT024872	Streptomyces phage Muntaha, complete genome	75122-75174	8	0.849
NC_015565_5	5.1\|1966570\|53\|NC_015565\|CRISPRCasFinder	1966570-1966622	53	MT024865	Streptomyces phage Wakanda, complete genome	74955-75007	8	0.849
NC_015565_1	1.13\|585450\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	585450-585483	34	MF417868	Uncultured Caudovirales phage clone 7AX_1, partial genome	134209-134242	9	0.735
NC_015565_1	1.13\|585450\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	585450-585483	34	MH542234	Staphylococcus phage Terranova, complete genome	48361-48394	9	0.735
NC_015565_1	1.13\|585450\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	585450-585483	34	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	11758-11791	9	0.735
NC_015565_1	1.13\|585450\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	585450-585483	34	MH321490	Staphylococcus phage Quidividi, complete genome	47703-47736	9	0.735
NC_015565_1	1.13\|585450\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	585450-585483	34	MH321491	Staphylococcus phage Twillingate, complete genome	48228-48261	9	0.735
NC_015565_2	2.9\|590449\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	590449-590482	34	NZ_CP043609	Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence	62590-62623	9	0.735
NC_015565_2	2.9\|590449\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	590449-590482	34	NZ_CP036547	Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_1, complete sequence	38651-38684	9	0.735
NC_015565_2	2.9\|590449\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	590449-590482	34	NZ_CP036540	Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_1, complete sequence	44279-44312	9	0.735
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NC_009130	Staphylococcus sp. 693-2 plasmid pLEW6932, complete sequence	6225-6259	9	0.743
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NC_011412	Clostridium perfringens plasmid pCP8533etx, complete sequence	22104-22138	9	0.743
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP019601	Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence	32837-32871	9	0.743
NC_015565_3	3.19\|623275\|36\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	623275-623310	36	NC_005355	Lactobacillus prophage Lj965, complete genome	9187-9222	9	0.75
NC_015565_3	3.19\|623275\|36\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	623275-623310	36	AY459535	Lactobacillus johnsonii prophage Lj965, complete genome	9187-9222	9	0.75
NC_015565_1	1.36\|586986\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	586986-587019	34	MN582082	Podoviridae sp. ctrTa16, complete genome	1282-1315	10	0.706
NC_015565_2	2.14\|590783\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	590783-590816	34	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	870741-870774	10	0.706
NC_015565_2	2.19\|591113\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591113-591146	34	NZ_CP044049	Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence	26548-26581	10	0.706
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP054442	Staphylococcus saprophyticus strain UTI-058y plasmid pUTI-058y-2, complete sequence	22268-22302	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP022091	Staphylococcus saprophyticus strain FDAARGOS_355 plasmid unnamed1, complete sequence	17614-17648	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP014058	Staphylococcus saprophyticus strain FDAARGOS_137 plasmid unnamed, complete sequence	14916-14950	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP014114	Staphylococcus saprophyticus strain FDAARGOS_168 plasmid unnamed1, complete sequence	27671-27705	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP035296	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence	12873-12907	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NC_016643	Staphylococcus saprophyticus subsp. saprophyticus plasmid pSSAP2, complete sequence	22268-22302	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP054435	Staphylococcus saprophyticus strain UTI-035 plasmid pUTI-035-1, complete sequence	22268-22302	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP017461	Staphylococcus nepalensis strain JS1 plasmid pSNJS101, complete sequence	34816-34850	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP017467	Staphylococcus nepalensis strain JS11 plasmid pSNJS1101, complete sequence	23247-23281	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP054577	Staphylococcus saprophyticus strain UTI-050 plasmid pUTI-050-2, complete sequence	3566-3600	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NZ_CP054446	Staphylococcus saprophyticus strain UTI-056 plasmid pUTI-056-2, complete sequence	22267-22301	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	NC_007351	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 plasmid pSSP1, complete sequence	11107-11141	10	0.714
NC_015565_2	2.28\|591711\|35\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591711-591745	35	JF734911	Helicobacter phage phiHP33, complete genome	11273-11307	10	0.714
NC_015565_2	2.26\|591579\|34\|NC_015565\|PILER-CR,CRISPRCasFinder,CRT	591579-591612	34	JQ432564	Uncultured bacterium plasmid pKS208, complete sequence	30238-30271	11	0.676

1. spacer 1.37|587052|38|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MK113950 (Phage 5P_2, complete genome) position: , mismatch: 0, identity: 1.0

tgattctatttctccaccgatatcaaaagcgctaggag	CRISPR spacer
tgattctatttctccaccgatatcaaaagcgctaggag	Protospacer
**************************************

2. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015797 (Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.829

attaata-aataaaaattaattagttttaaaaaaac	CRISPR spacer
-tcaatattataaagattaatttgttttaaaaaaaa	Protospacer
 *.****  *****.******* ************

3. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015781 (Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence) position: , mismatch: 6, identity: 0.829

attaata-aataaaaattaattagttttaaaaaaac	CRISPR spacer
-tcaatattataaagattaatttgttttaaaaaaaa	Protospacer
 *.****  *****.******* ************

4. spacer 2.38|592377|33|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MK574078 (Pseudomonas phage KP1, complete sequence) position: , mismatch: 6, identity: 0.818

--atgaaaaaacaaaaccgccttacggcggtctaa	CRISPR spacer
ggatgaaaaa--aaaaccgcctttcggcggtcatt	Protospacer
  ********  *********** ********

5. spacer 2.17|590982|33|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018204 (Leptolyngbya boryana NIES-2135 plasmid plasmid1 DNA, complete genome) position: , mismatch: 7, identity: 0.788

-atatcgtagactttggttttgcagtttgggcac	CRISPR spacer
tgggtcgc-gagttaggttttgcagtttgggcac	Protospacer
 . .***. ** ** *******************

6. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_019928 (Helicobacter phage KHP30 DNA, complete genome) position: , mismatch: 7, identity: 0.8

-attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
gatcaataag-aaaaatgaattagttttaaaaacga	Protospacer
 **.*****. ****** *************** .

7. spacer 4.30|806513|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 7, identity: 0.8

aatactttagcaaaatattcttcttgttcttttgt	CRISPR spacer
aaagttttagcaaaatattctttttgttcattatt	Protospacer
** ..*****************.****** **  *

8. spacer 4.30|806513|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 7, identity: 0.8

aatactttagcaaaatattcttcttgttcttttgt	CRISPR spacer
aaagttttagcaaaatattctttttgttcattatt	Protospacer
** ..*****************.****** **  *

9. spacer 1.2|584716|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

aatcaaggct--tgaagcagggaagccattatggga	CRISPR spacer
--ttattgcccgtgaaacaggtaagccattatggga	Protospacer
  *.*  **.  ****.**** **************

10. spacer 2.8|590382|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 8, identity: 0.771

ttcccggttatttaaagtaagtctttgaaatagtg	CRISPR spacer
ttaaaggctattttaagtaagtctttgaaattttt	Protospacer
**   **.***** *****************  *

11. spacer 2.8|590382|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_011247 (Borrelia duttonii Ly plasmid pl165, complete sequence) position: , mismatch: 8, identity: 0.771

ttcccggttatttaaagtaagtctttgaaatagtg	CRISPR spacer
ttaaaggctattttaagtaagtctttgaaattttt	Protospacer
**   **.***** *****************  *

12. spacer 2.17|590982|33|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007453 (Peptoclostridium acidaminophilum DSM 3953 strain al-2 plasmid EAL2_808p, complete sequence) position: , mismatch: 8, identity: 0.758

atatcgtagactttggttttgcagtttgggcac	CRISPR spacer
tcatgcttgactctggttttgcattttgggcat	Protospacer
 .**  * ****.********** ********.

13. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_019688 (Clostridium perfringens plasmid pNetB-NE10, complete sequence) position: , mismatch: 8, identity: 0.771

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
attttacaataaaaattaattattttcaaaaatat	Protospacer
***    *************** ***.***** *.

14. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025502 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence) position: , mismatch: 8, identity: 0.771

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
attttacaataaaaattaattattttcaaaaatat	Protospacer
***    *************** ***.***** *.

15. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_012226 (Brachyspira hyodysenteriae WA1 plasmid pBHWA1, complete sequence) position: , mismatch: 8, identity: 0.771

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
atataaatctaaaaattaattatttttaaagaaag	Protospacer
**  * *  ************* *******.***

16. spacer 3.8|622458|37|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MK448767 (Streptococcus phage Javan467, complete genome) position: , mismatch: 8, identity: 0.784

caacataatctgcctgcttttgtgttacttttttaat	CRISPR spacer
caacataatcagcctgtttttgtgttaactcaatcat	Protospacer
********** *****.********** .*.  * **

17. spacer 3.8|622458|37|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MK448942 (Streptococcus phage Javan448, complete genome) position: , mismatch: 8, identity: 0.784

caacataatctgcctgcttttgtgttacttttttaat	CRISPR spacer
caacataatcagcctgtttttgtgttaactcaatcat	Protospacer
********** *****.********** .*.  * **

18. spacer 3.8|622458|37|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_004586 (Streptococcus pyogenes phage 315.3, complete genome) position: , mismatch: 8, identity: 0.784

caacataatctgcctgcttttgtgttacttttttaat	CRISPR spacer
caacataatcagcctgtttttgtgttaactcaatcat	Protospacer
********** *****.********** .*.  * **

19. spacer 3.8|622458|37|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MK448964 (Streptococcus phage Javan502, complete genome) position: , mismatch: 8, identity: 0.784

caacataatctgcctgcttttgtgttacttttttaat	CRISPR spacer
caacataatcagcctgtttttgtgttaactcaatcat	Protospacer
********** *****.********** .*.  * **

20. spacer 3.8|622458|37|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MK448943 (Streptococcus phage Javan450, complete genome) position: , mismatch: 8, identity: 0.784

caacataatctgcctgcttttgtgttacttttttaat	CRISPR spacer
caacataatcagcctgtttttgtgttaactcaatcat	Protospacer
********** *****.********** .*.  * **

21. spacer 3.8|622458|37|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MK448786 (Streptococcus phage Javan509, complete genome) position: , mismatch: 8, identity: 0.784

caacataatctgcctgcttttgtgttacttttttaat	CRISPR spacer
caacataatcagcctgtttttgtgttaactcaatcat	Protospacer
********** *****.********** .*.  * **

22. spacer 3.8|622458|37|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MK448963 (Streptococcus phage Javan498, complete genome) position: , mismatch: 8, identity: 0.784

caacataatctgcctgcttttgtgttacttttttaat	CRISPR spacer
caacataatcagcctgtttttgtgttaactcaatcat	Protospacer
********** *****.********** .*.  * **

23. spacer 5.1|1966570|53|NC_015565|CRISPRCasFinder matches to MT024872 (Streptomyces phage Muntaha, complete genome) position: , mismatch: 8, identity: 0.849

aggcccaatttg----gctccccgagtaggattcgaacctacaacctaccggttaac	CRISPR spacer
----gcagtttgtcaagctccccgagtaggactcgaacctacaacctatcggttaac	Protospacer
     **.****    ***************.****************.********

24. spacer 5.1|1966570|53|NC_015565|CRISPRCasFinder matches to MT024865 (Streptomyces phage Wakanda, complete genome) position: , mismatch: 8, identity: 0.849

--aggcccaatttggctccccgagtaggattcgaacctacaacctaccggttaac	CRISPR spacer
taccacgcaatt--gctccccgagtaggactcgaacctacaacctatcggttaac	Protospacer
    .* *****  ***************.****************.********

25. spacer 1.13|585450|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 9, identity: 0.735

tttagtagcttttggttttttagcagttgtagtt	CRISPR spacer
tttagtagcttttacttttttagccattatttaa	Protospacer
*************. ********* .**.*

26. spacer 1.13|585450|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 9, identity: 0.735

tttagtagcttttggttttttagcagttgtagtt	CRISPR spacer
tttagtagcttttacttttttagccattatttaa	Protospacer
*************. ********* .**.*

27. spacer 1.13|585450|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 9, identity: 0.735

tttagtagcttttggttttttagcagttgtagtt	CRISPR spacer
tttagtagcttttacttttttagccattatttaa	Protospacer
*************. ********* .**.*

28. spacer 1.13|585450|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 9, identity: 0.735

tttagtagcttttggttttttagcagttgtagtt	CRISPR spacer
tttagtagcttttacttttttagccattatttaa	Protospacer
*************. ********* .**.*

29. spacer 1.13|585450|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 9, identity: 0.735

tttagtagcttttggttttttagcagttgtagtt	CRISPR spacer
tttagtagcttttacttttttagccattatttaa	Protospacer
*************. ********* .**.*

30. spacer 2.9|590449|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043609 (Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ccaaaaatatctccgcttctcaatctctgtcagc--	CRISPR spacer
aaggaaatacctacgcttctcaatctc--tcaacca	Protospacer
  ..*****.** **************  ***.*

31. spacer 2.9|590449|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036547 (Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_1, complete sequence) position: , mismatch: 9, identity: 0.735

ccaaaaatatctccgcttctcaatctctgtcagc--	CRISPR spacer
aaggaaatacctacgcttctcaatctc--tcaacca	Protospacer
  ..*****.** **************  ***.*

32. spacer 2.9|590449|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036540 (Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_1, complete sequence) position: , mismatch: 9, identity: 0.735

ccaaaaatatctccgcttctcaatctctgtcagc--	CRISPR spacer
aaggaaatacctacgcttctcaatctc--tcaacca	Protospacer
  ..*****.** **************  ***.*

33. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_009130 (Staphylococcus sp. 693-2 plasmid pLEW6932, complete sequence) position: , mismatch: 9, identity: 0.743

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaaact	Protospacer
*. .*  ******** ********** ****** .

34. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_011412 (Clostridium perfringens plasmid pCP8533etx, complete sequence) position: , mismatch: 9, identity: 0.743

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
attttacaataaaaattaattattttcaaaaatgt	Protospacer
***    *************** ***.***** ..

35. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019601 (Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence) position: , mismatch: 9, identity: 0.743

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
atacaattctaaaaattaattatttttaaagaaag	Protospacer
**  *    ************* *******.***

36. spacer 3.19|623275|36|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_005355 (Lactobacillus prophage Lj965, complete genome) position: , mismatch: 9, identity: 0.75

--atccccaaaccattactatcaactataacaattttt	CRISPR spacer
tgattttt--accattactatcacctaaaacaatttgt	Protospacer
  **....  ************* *** ******** *

37. spacer 3.19|623275|36|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to AY459535 (Lactobacillus johnsonii prophage Lj965, complete genome) position: , mismatch: 9, identity: 0.75

--atccccaaaccattactatcaactataacaattttt	CRISPR spacer
tgattttt--accattactatcacctaaaacaatttgt	Protospacer
  **....  ************* *** ******** *

38. spacer 1.36|586986|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to MN582082 (Podoviridae sp. ctrTa16, complete genome) position: , mismatch: 10, identity: 0.706

atgaaaagtatggttggggaaaacggatacttaa	CRISPR spacer
ccgataagtatggttggggtaaacggatgtcagg	Protospacer
 .** ************** ********... ..

39. spacer 2.14|590783|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

caaaattccagggagaacaccgcctttctcattg	CRISPR spacer
gacctatacagggagaataccgcttttctcataa	Protospacer
 *    * *********.*****.******** .

40. spacer 2.19|591113|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044049 (Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

tcctttatatgcttgtccaagttttgcatagctt	CRISPR spacer
atttgaaccagcttgttcaagttttgtatagctt	Protospacer
 ..*  *.  ******.*********.*******

41. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054442 (Staphylococcus saprophyticus strain UTI-058y plasmid pUTI-058y-2, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

42. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022091 (Staphylococcus saprophyticus strain FDAARGOS_355 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

43. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014058 (Staphylococcus saprophyticus strain FDAARGOS_137 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

44. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014114 (Staphylococcus saprophyticus strain FDAARGOS_168 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

45. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035296 (Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

46. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_016643 (Staphylococcus saprophyticus subsp. saprophyticus plasmid pSSAP2, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

47. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054435 (Staphylococcus saprophyticus strain UTI-035 plasmid pUTI-035-1, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

48. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017461 (Staphylococcus nepalensis strain JS1 plasmid pSNJS101, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

49. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017467 (Staphylococcus nepalensis strain JS11 plasmid pSNJS1101, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

50. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054577 (Staphylococcus saprophyticus strain UTI-050 plasmid pUTI-050-2, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

51. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054446 (Staphylococcus saprophyticus strain UTI-056 plasmid pUTI-056-2, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

52. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to NC_007351 (Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 plasmid pSSP1, complete sequence) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
acagaataataaaaaataattagtttaaaaaactg	Protospacer
*. .*  ******** ********** *****

53. spacer 2.28|591711|35|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to JF734911 (Helicobacter phage phiHP33, complete genome) position: , mismatch: 10, identity: 0.714

attaataaataaaaattaattagttttaaaaaaac	CRISPR spacer
gctcaataagaaaaatgaattagttttaaaaacga	Protospacer
..* *  ** ****** *************** .

54. spacer 2.26|591579|34|NC_015565|PILER-CR,CRISPRCasFinder,CRT matches to JQ432564 (Uncultured bacterium plasmid pKS208, complete sequence) position: , mismatch: 11, identity: 0.676

tcaatgcccacggtttttgccacgccgccaacgg	CRISPR spacer
ctgctgcccacggtttttgccaaggcgctgtccc	Protospacer
... ****************** * ***.. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

809753 : 861528

Bacillus_phage(33.33%)

integrase,transposase

attL 809086:809102|attR 843500:843516

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
809086:809102	attL	NA	NA	NA	NA
WP_013809817.1\|809753_811244_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_095532128.1\|814240_815452_+	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041275067.1\|815580_816486_+	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_041275166.1\|816522_817593_+	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_013809822.1\|817552_818311_+	urea ABC transporter ATP-binding protein UrtD	A0A2H4PQG7	Staphylococcus_phage	2.3e-15	25.5
WP_013809823.1\|818303_818999_+	urea ABC transporter ATP-binding subunit UrtE	G9BWD6	Planktothrix_phage	1.9e-19	28.7
WP_013809824.1\|819026_819329_+	urease subunit gamma	NA	NA	NA	NA
WP_013809825.1\|819358_819733_+	urease subunit beta	NA	NA	NA	NA
WP_013809826.1\|819732_821448_+	urease subunit alpha	NA	NA	NA	NA
WP_013809827.1\|821465_821912_+	urease accessory protein UreE	NA	NA	NA	NA
WP_013809828.1\|821877_822594_+	urease accessory protein UreF	NA	NA	NA	NA
WP_041275167.1\|822674_823289_+	urease accessory protein UreG	NA	NA	NA	NA
WP_013809830.1\|823282_824155_+	urease accessory protein UreD	NA	NA	NA	NA
WP_013809831.1\|824447_825728_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157667920.1\|826508_826664_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_041275170.1\|827654_828899_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_013809834.1\|828947_829172_-	DUF5348 domain-containing protein	NA	NA	NA	NA
WP_013809835.1\|829316_829841_-	hypothetical protein	NA	NA	NA	NA
WP_049780025.1\|830019_830526_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_013809837.1\|833351_834512_+	transcriptional regulator	NA	NA	NA	NA
WP_013809838.1\|834676_835948_+	GntP family permease	NA	NA	NA	NA
WP_013809839.1\|835976_837113_+	glycerate kinase	W6LM47	Streptococcus_phage	1.6e-49	38.9
WP_013809840.1\|843214_844204_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	6.0e-64	41.9
843500:843516	attR	NA	NA	NA	NA
WP_003545122.1\|844220_844622_-	GtrA family protein	NA	NA	NA	NA
WP_013809841.1\|845681_847130_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.7e-30	31.5
WP_003545128.1\|847126_847819_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.9e-40	37.7
WP_003545130.1\|848219_850178_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_003545132.1\|850479_850779_+	hypothetical protein	NA	NA	NA	NA
WP_003545134.1\|850847_851201_+	hypothetical protein	NA	NA	NA	NA
WP_003545136.1\|851254_852214_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_003545138.1\|852254_853226_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_003545140.1\|853227_854217_+	ATP-NAD kinase	NA	NA	NA	NA
WP_013809842.1\|854216_854963_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_003545145.1\|854967_855813_+	lipoyl synthase	NA	NA	NA	NA
WP_013809844.1\|855843_857436_+	alkylhydroperoxidase	NA	NA	NA	NA
WP_081460796.1\|857444_857591_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_003545149.1\|857695_858085_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_013809845.1\|858220_859522_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_013809846.1\|860124_861528_+\|transposase	IS1380 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1879203 : 1892252

Synechococcus_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003544074.1\|1879203_1879836_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.2e-30	43.1
WP_013810354.1\|1879876_1880932_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	7.1e-71	45.1
WP_013810355.1\|1880944_1882369_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.5e-60	33.3
WP_157667955.1\|1882353_1884549_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.2e-167	43.8
WP_003544068.1\|1884572_1885274_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003544067.1\|1885277_1885526_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003544066.1\|1885705_1886410_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	2.1e-42	40.7
WP_003544065.1\|1886437_1887730_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.1e-20	34.6
WP_013810357.1\|1887803_1888319_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.2e-20	43.4
WP_013810358.1\|1888337_1889714_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.9e-48	32.7
WP_013810359.1\|1890159_1891701_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.0e-22	30.2
WP_003544061.1\|1891712_1892252_-	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	2.5e-11	29.7

DBSCAN-SWA_3

1897087 : 1937125

Moumouvirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041275131.1\|1897087_1898299_-\|transposase	DDE transposase	NA	NA	NA	NA
WP_013810363.1\|1898409_1898994_-	chemotaxis protein CheC	NA	NA	NA	NA
WP_003544050.1\|1899023_1899794_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_003544048.1\|1899795_1900296_-	chemotaxis protein CheD	NA	NA	NA	NA
WP_013810364.1\|1900343_1901126_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_013810365.1\|1901170_1901944_-	flagellar basal-body rod protein FlgF	NA	NA	NA	NA
WP_003544043.1\|1901958_1902714_-	FliA/WhiG family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013810366.1\|1902728_1903394_-	pilus biosynthesis protein PilZ	NA	NA	NA	NA
WP_013810367.1\|1903398_1904259_-	MinD/ParA family protein	NA	NA	NA	NA
WP_013810368.1\|1904239_1905544_-	flagellar biosynthesis protein FlhF	NA	NA	NA	NA
WP_013810369.1\|1905540_1907613_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_013810370.1\|1907649_1908714_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA
WP_013810371.1\|1908713_1909481_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_003544036.1\|1909492_1909762_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_027351941.1\|1909774_1910563_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_003544034.1\|1910525_1910954_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA
WP_003544033.1\|1910943_1911339_-	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_003544032.1\|1911350_1911806_-	flagellar basal body-associated FliL family protein	NA	NA	NA	NA
WP_013810373.1\|1911891_1912686_-	flagellar basal-body rod protein FlgF	NA	NA	NA	NA
WP_003544030.1\|1912764_1913178_-	flagellar protein	NA	NA	NA	NA
WP_003544029.1\|1913174_1913591_-	flagellar hook capping protein	NA	NA	NA	NA
WP_013810374.1\|1913603_1915229_-	flagellar hook-length control protein FliK	NA	NA	NA	NA
WP_013810375.1\|1915272_1915701_-	flagellar export protein FliJ	NA	NA	NA	NA
WP_003544025.1\|1915703_1917035_-	flagellar protein export ATPase FliI	NA	NA	NA	NA
WP_013810376.1\|1917039_1917750_-	flagellar biosynthesis protein	NA	NA	NA	NA
WP_013810377.1\|1917742_1918753_-	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_013810378.1\|1918765_1920307_-	flagellar M-ring protein FliF	NA	NA	NA	NA
WP_003544017.1\|1920328_1920619_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_003544015.1\|1920631_1921069_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA
WP_013810379.1\|1921076_1921475_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_013810380.1\|1921873_1922953_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2P1ELT3	Moumouvirus	3.4e-28	29.2
WP_041275205.1\|1923117_1923519_+	DNA polymerase subunit beta	NA	NA	NA	NA
WP_003544005.1\|1923511_1923919_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_003544004.1\|1923915_1924302_-	flagellar protein FlaG	NA	NA	NA	NA
WP_013810382.1\|1924321_1924741_-	hypothetical protein	NA	NA	NA	NA
WP_013810383.1\|1924743_1925136_-	flagellar export chaperone FliS	NA	NA	NA	NA
WP_013810384.1\|1925281_1925704_+	flagellar assembly protein FliW	NA	NA	NA	NA
WP_013810385.1\|1925704_1925938_+	carbon storage regulator CsrA	H2BD56	Pseudomonas_phage	1.2e-07	47.1
WP_013810386.1\|1925978_1927709_-	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_013810387.1\|1927980_1928250_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_081460808.1\|1928275_1928422_+	hypothetical protein	NA	NA	NA	NA
WP_013810389.1\|1929349_1929823_+	hypothetical protein	NA	NA	NA	NA
WP_013810390.1\|1930285_1931035_+	hypothetical protein	NA	NA	NA	NA
WP_013810391.1\|1932123_1933560_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_013809461.1\|1933528_1934188_-\|transposase	IS607 family transposase	A0A7Q0	Microcystis_virus	1.7e-22	34.7
WP_027351935.1\|1934356_1935304_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_081460809.1\|1935995_1936574_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_013810394.1\|1936555_1937125_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2351537 : 2360766

Bacillus_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003541908.1\|2351537_2351909_-	Fe-S cluster assembly scaffold protein NifU	A0A2H4N7M4	Lake_Baikal_phage	3.7e-27	51.2
WP_003541906.1\|2351940_2353179_-	cysteine desulfurase NifS	H7BUW1	unidentified_phage	6.8e-41	39.2
WP_013810634.1\|2353220_2353664_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_003541903.1\|2353872_2354199_-	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	6.2e-18	38.0
WP_003541901.1\|2354378_2355131_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	S4VW33	Pandoravirus	5.1e-23	37.5
WP_003541899.1\|2355189_2356629_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.1e-29	30.7
WP_003541897.1\|2356628_2357303_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.0e-38	38.1
WP_003541895.1\|2357344_2358454_-	PDZ domain-containing protein	W5SAB9	Pithovirus	3.3e-18	37.3
WP_013810635.1\|2358960_2360766_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	3.3e-12	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015565

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection