CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015589	Desulfotomaculum ruminis DSM 2154, complete sequence	12 crisprs	cas3,csa3,DEDDh,cmr1gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,cas5,cas8c,cas7,cas4,cas1,cas2,WYL,DinG,cas7b,cas8b1,cas6,csm3gr7,csx10gr5,PD-DExK	1	32	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015589_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_1

1100345-1102519

Orphan

Consensus_repeat	Method
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CRISPRCasFinder
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CRT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	PILER-CR

32 spacers

The CRISPR arrays of NC_015589_1

>merge|NC_015589|1|1100345-1102519|CRISPRCasFinder,CRT,PILER-CR
TATTCTTCTCCTTATAGGTAGGCTAGAAACGGTCTGAAGCAACTGCTTGAGACTAAAAAAGACGTGTTTCAAATCCTTATAGGTAGGCTAGAAACTTCTCTCCAGTTCGTCTTTATCTCTGCCTGTGACCAGTTTCAAATCCTTATAGGTAGGCTAGAAACCTGCTGATATTCATCGTCTCTGGCGCAGAACATACTGGGTTTCAAATCCTTATAGGTAGGCTAGAAACAGTGAATTTATAACACTTTGGACTATTTACAAACAAGTTTCAAATCCTTATAGGTAGGCTAGAAACACGGGCAATACAGGCTTCACAGACTGGGTGTTTATAGAGTTTCAAATCCTTATAGGTAGGCTAGAAACGTCTATAGTAAACCAAACTCCTGTTTATTTATCTTTGTTTCAAATCCTTATAGGTAGGCTAGAAACTTAGCCATTGGCGGCATTCCTCCTTAATATCCCGGTTTCAAATCCTTATAGGTAGGCTAGAAACTGGTGCCAAGTAGAGTTAGGACAATTGGTGCACAGTTGTTTCAAATCCTTATAGGTAGGCTAGAAACCAACGAATTCGGCCATCTCCTCGCGGCTGTCCTTGGTTTCAAATCCTTATAGGTAGGCTAGAAACGGGTGTTCTCTCCAACCAAAGCCAGAAGATACCCAAGTTTCAAATCCTTATAGGTAGGCTAGAAACCCAAACCTTTATTTTGCCTTCATCGTCTATTTCAGTTTCAAATCCTTATAGGTAGGCTAGAAACTATCTGAGGCCTTGAATAACCTAAGTTTCCCATAGGATAGTTTCAAATCCTTATAGGTAGGCTAGAAACAACAATTCGCCAGGCAAGAACCATTTTAGAGATTGCGTTTCAAATCCTTATAGGTAGGCTAGAAACCAAGGGCTATTTTCCCTCTTTTTCCAAAAACAATTCATGGTTTCAAATCCTTATAGGTAGGCTAGAAACGGCCGAGGGATTTGGCCCGGAAAACGGATATATCTGTTTCAAATCCTTATAGGTAGGCTAGAAACGTATGTGTTGCCGTTATCCTCATGAATTTGAGCAGTTTCAAATCCTTATAGGTAGGCTAGAAACAGTTTGTATACGTAACGGACGACGAATTCGACAAAAGTTTCAAATCCTTATAGGTAGGCTAGAAACGATAAAGTTGAATTTTTGAAATCGATATCATTCCAAGGTTTCAAATCCTTATAGGTAGGCTAGAAACTATTTTATGGAACAGCGAAACAGAGACGGTTACGCTACGGTTTCAAATCCTTATAGGTAGGCTAGAAACAACTCTAGCAGATACCGCCAAGACCCAGCAACAAATGTTTCAAATCCTTATAGGTAGGCTAGAAACTTCTCATGAAAGCAAAAAATAAAGAAGAGATTGACCATAGTTTCAAATCCTTATAGGTAGGCTAGAAACGAACTGGCTTCCCAAAAAGCTGTAACTGAAGCAATTGAGTTTCAAATCCTTATAGGTAGGCTAGAAACGAAAGATGGGTCACATCAAGTACCGATCCCCCGGTGTAGGTTTCAAATCCTTATAGGTAGGCTAGAAACCTAAGCGCTCACCTAACTGTTTTCTGCGTATATTGTAGTTTCAAATCCTTATAGGTAGGCTAGAAACACACAAGGCTTTGATTTTGGTATACTAATATCAAGAGTTTCAAATCCTTATAGGTAGGCTAGAAACTAACACATAATTATGCGATACGCAAATATAATAATTAGTTTCAAATCCTTATAGGTAGGCTAGAAACTCGGATATGACATCTGTAAAGACGAAAAGGATTATGAGGGTTTCAAATCCTTATAGGTAGGCTAGAAACCAAGGTATCTACAGATTGGATTATCCACGGAAACAAACTTGTTTCAAATCCTTATAGGTAGGCTAGAAACTTACTCCAACTCCTGTAAATACTACTGCAGAGAGGAGGGTTTCAAATCCTTATAGGTAGGCTAGAAACTAGTTCATGTTCTGTGTTTTTTGCTGCTGCTAGCATAGAGGTTTCAAATCCTTATAGGTAGGCTAGAAACCGAACAATATTACAATAGATGCCAAACCATATATTAAAGTTTCAAATCCTTATAGGTAGGCTAGAAACATACGCACATTCCTGAGCGTATTAAAAATAATGTCGAAGTTTCAAATCCTTATAAATTGTAACATGCT

>NC_015589|1|1|1100345-1102451|CRISPRCasFinder
TATTCTTCTCCTTATAGGTAGGCTAGAAAC	GGTCTGAAGCAACTGCTTGAGACTAAAAAAGACGT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTCTCTCCAGTTCGTCTTTATCTCTGCCTGTGACCA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CTGCTGATATTCATCGTCTCTGGCGCAGAACATACTGG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AGTGAATTTATAACACTTTGGACTATTTACAAACAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	ACGGGCAATACAGGCTTCACAGACTGGGTGTTTATAGA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GTCTATAGTAAACCAAACTCCTGTTTATTTATCTTT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTAGCCATTGGCGGCATTCCTCCTTAATATCCCG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TGGTGCCAAGTAGAGTTAGGACAATTGGTGCACAGTT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CAACGAATTCGGCCATCTCCTCGCGGCTGTCCTTG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GGGTGTTCTCTCCAACCAAAGCCAGAAGATACCCAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CCAAACCTTTATTTTGCCTTCATCGTCTATTTCA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TATCTGAGGCCTTGAATAACCTAAGTTTCCCATAGGATA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AACAATTCGCCAGGCAAGAACCATTTTAGAGATTGC
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CAAGGGCTATTTTCCCTCTTTTTCCAAAAACAATTCATG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GGCCGAGGGATTTGGCCCGGAAAACGGATATATCT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GTATGTGTTGCCGTTATCCTCATGAATTTGAGCA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AGTTTGTATACGTAACGGACGACGAATTCGACAAAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GATAAAGTTGAATTTTTGAAATCGATATCATTCCAAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TATTTTATGGAACAGCGAAACAGAGACGGTTACGCTACG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AACTCTAGCAGATACCGCCAAGACCCAGCAACAAAT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTCTCATGAAAGCAAAAAATAAAGAAGAGATTGACCATA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GAACTGGCTTCCCAAAAAGCTGTAACTGAAGCAATTGA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GAAAGATGGGTCACATCAAGTACCGATCCCCCGGTGTAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CTAAGCGCTCACCTAACTGTTTTCTGCGTATATTGTA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	ACACAAGGCTTTGATTTTGGTATACTAATATCAAGA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TAACACATAATTATGCGATACGCAAATATAATAATTA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TCGGATATGACATCTGTAAAGACGAAAAGGATTATGAGG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CAAGGTATCTACAGATTGGATTATCCACGGAAACAAACTT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTACTCCAACTCCTGTAAATACTACTGCAGAGAGGAGG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TAGTTCATGTTCTGTGTTTTTTGCTGCTGCTAGCATAGAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CGAACAATATTACAATAGATGCCAAACCATATATTAAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC

>NC_015589|1|1|1100345-1102519|CRT
TATTCTTCTCCTTATAGGTAGGCTAGAAAC	GGTCTGAAGCAACTGCTTGAGACTAAAAAAGACGT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTCTCTCCAGTTCGTCTTTATCTCTGCCTGTGACCA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CTGCTGATATTCATCGTCTCTGGCGCAGAACATACTGG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AGTGAATTTATAACACTTTGGACTATTTACAAACAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	ACGGGCAATACAGGCTTCACAGACTGGGTGTTTATAGA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GTCTATAGTAAACCAAACTCCTGTTTATTTATCTTT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTAGCCATTGGCGGCATTCCTCCTTAATATCCCG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TGGTGCCAAGTAGAGTTAGGACAATTGGTGCACAGTT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CAACGAATTCGGCCATCTCCTCGCGGCTGTCCTTG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GGGTGTTCTCTCCAACCAAAGCCAGAAGATACCCAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CCAAACCTTTATTTTGCCTTCATCGTCTATTTCA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TATCTGAGGCCTTGAATAACCTAAGTTTCCCATAGGATA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AACAATTCGCCAGGCAAGAACCATTTTAGAGATTGC
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CAAGGGCTATTTTCCCTCTTTTTCCAAAAACAATTCATG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GGCCGAGGGATTTGGCCCGGAAAACGGATATATCT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GTATGTGTTGCCGTTATCCTCATGAATTTGAGCA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AGTTTGTATACGTAACGGACGACGAATTCGACAAAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GATAAAGTTGAATTTTTGAAATCGATATCATTCCAAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TATTTTATGGAACAGCGAAACAGAGACGGTTACGCTACG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AACTCTAGCAGATACCGCCAAGACCCAGCAACAAAT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTCTCATGAAAGCAAAAAATAAAGAAGAGATTGACCATA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GAACTGGCTTCCCAAAAAGCTGTAACTGAAGCAATTGA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GAAAGATGGGTCACATCAAGTACCGATCCCCCGGTGTAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CTAAGCGCTCACCTAACTGTTTTCTGCGTATATTGTA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	ACACAAGGCTTTGATTTTGGTATACTAATATCAAGA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TAACACATAATTATGCGATACGCAAATATAATAATTA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TCGGATATGACATCTGTAAAGACGAAAAGGATTATGAGG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CAAGGTATCTACAGATTGGATTATCCACGGAAACAAACTT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTACTCCAACTCCTGTAAATACTACTGCAGAGAGGAGG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TAGTTCATGTTCTGTGTTTTTTGCTGCTGCTAGCATAGAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CGAACAATATTACAATAGATGCCAAACCATATATTAAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	ATACGCACATTCCTGAGCGTATTAAAAATAATGTCGAA
GTTTCAAATCCTTATAAATTGTAACATGCT

>NC_015589|1|1|1100410-1102451|PILER-CR
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTCTCTCCAGTTCGTCTTTATCTCTGCCTGTGACCA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CTGCTGATATTCATCGTCTCTGGCGCAGAACATACTGG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AGTGAATTTATAACACTTTGGACTATTTACAAACAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	ACGGGCAATACAGGCTTCACAGACTGGGTGTTTATAGA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GTCTATAGTAAACCAAACTCCTGTTTATTTATCTTT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTAGCCATTGGCGGCATTCCTCCTTAATATCCCG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TGGTGCCAAGTAGAGTTAGGACAATTGGTGCACAGTT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CAACGAATTCGGCCATCTCCTCGCGGCTGTCCTTG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GGGTGTTCTCTCCAACCAAAGCCAGAAGATACCCAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CCAAACCTTTATTTTGCCTTCATCGTCTATTTCA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TATCTGAGGCCTTGAATAACCTAAGTTTCCCATAGGATA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AACAATTCGCCAGGCAAGAACCATTTTAGAGATTGC
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CAAGGGCTATTTTCCCTCTTTTTCCAAAAACAATTCATG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GGCCGAGGGATTTGGCCCGGAAAACGGATATATCT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GTATGTGTTGCCGTTATCCTCATGAATTTGAGCA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AGTTTGTATACGTAACGGACGACGAATTCGACAAAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GATAAAGTTGAATTTTTGAAATCGATATCATTCCAAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TATTTTATGGAACAGCGAAACAGAGACGGTTACGCTACG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	AACTCTAGCAGATACCGCCAAGACCCAGCAACAAAT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTCTCATGAAAGCAAAAAATAAAGAAGAGATTGACCATA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GAACTGGCTTCCCAAAAAGCTGTAACTGAAGCAATTGA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GAAAGATGGGTCACATCAAGTACCGATCCCCCGGTGTAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CTAAGCGCTCACCTAACTGTTTTCTGCGTATATTGTA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	ACACAAGGCTTTGATTTTGGTATACTAATATCAAGA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TAACACATAATTATGCGATACGCAAATATAATAATTA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TCGGATATGACATCTGTAAAGACGAAAAGGATTATGAGG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CAAGGTATCTACAGATTGGATTATCCACGGAAACAAACTT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TTACTCCAACTCCTGTAAATACTACTGCAGAGAGGAGG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TAGTTCATGTTCTGTGTTTTTTGCTGCTGCTAGCATAGAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CGAACAATATTACAATAGATGCCAAACCATATATTAAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013841110.1\|1099304_1100201_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|183450
NC_015589.1\|WP_013841104.1\|1091447_1093928_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NC_015589.1\|WP_013841101.1\|1088295_1088877_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-YqeK	unknown	unknown	gnl\|CDD\|224627
NC_015589.1\|WP_041275607.1\|1095433_1096069_+\|ComEA-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224472
NC_015589.1\|WP_013841115.1\|1105488_1106160_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NC_015589.1\|WP_013841117.1\|1106498_1106870_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841119.1\|1107505_1108105_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841121.1\|1108661_1109840_+\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NC_015589.1\|WP_013841116.1\|1106178_1106481_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_015589.1\|WP_013841102.1\|1088922_1089279_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779
NC_015589.1\|WP_013841112.1\|1103978_1104443_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NC_015589.1\|WP_013841118.1\|1106866_1107328_+\|sporulation-initiation-factor-Spo0A-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378047
NC_015589.1\|WP_013841114.1\|1105284_1105488_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015589.1\|WP_041275606.1\|1094630_1095317_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NC_015589.1\|WP_013841103.1\|1089663_1091328_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NC_015589.1\|WP_013841120.1\|1108272_1108665_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_143758858.1\|1094089_1094557_+\|DUF2179-domain-containing-protein	unknown	unknown	gnl\|CDD\|235234
NC_015589.1\|WP_013841109.1\|1096769_1099172_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|377126
NC_015589.1\|WP_013841111.1\|1102651_1103887_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_015589.1\|WP_013841108.1\|1096112_1096766_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013841110.1\|1099304_1100201_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|183450	PRK12335, PRK12335, tellurite resistance protein TehB; Provisional.	1.8308e-14
NC_015589.1\|WP_013841104.1\|1091447_1093928_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NC_015589.1\|WP_013841101.1\|1088295_1088877_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-YqeK	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.35184e-60
NC_015589.1\|WP_041275607.1\|1095433_1096069_+\|ComEA-family-DNA-binding-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	1.28773e-22
NC_015589.1\|WP_013841115.1\|1105488_1106160_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	2.51759e-36
NC_015589.1\|WP_013841121.1\|1108661_1109840_+\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	0
NC_015589.1\|WP_013841116.1\|1106178_1106481_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	3.93044e-05
NC_015589.1\|WP_013841102.1\|1088922_1089279_+\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	1.82626e-52
NC_015589.1\|WP_013841112.1\|1103978_1104443_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	5.44378e-10
NC_015589.1\|WP_013841118.1\|1106866_1107328_+\|sporulation-initiation-factor-Spo0A-C-terminal-domain-containing-protein	gnl\|CDD\|378047	pfam08769, Spo0A_C, Sporulation initiation factor Spo0A C terminal. The response regulator Spo0A is comprised of a phophoacceptor domain and a transcription activation domain. This domain corresponds to the transcription activation domain and forms an alpha helical structure comprising of 6 alpha helices. The structure contains a helix-turn-helix and binds DNA.	5.8247e-38
NC_015589.1\|WP_013841114.1\|1105284_1105488_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.000356222
NC_015589.1\|WP_041275606.1\|1094630_1095317_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	1.87054e-75
NC_015589.1\|WP_013841103.1\|1089663_1091328_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NC_015589.1\|WP_143758858.1\|1094089_1094557_+\|DUF2179-domain-containing-protein	gnl\|CDD\|235234	PRK04164, PRK04164, hypothetical protein; Provisional.	7.42863e-39
NC_015589.1\|WP_013841109.1\|1096769_1099172_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	9.6546e-69
NC_015589.1\|WP_013841111.1\|1102651_1103887_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.78572e-40
NC_015589.1\|WP_013841108.1\|1096112_1096766_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	4.72721e-49

>NC_015589.1|WP_013841110.1|1099304_1100201_+|helix-turn-helix-domain-containing-protein
MVSRSDQRYNLTYSTNNFSEVIALFNKKIFGKRIALLRKENGYTQEQLAEILHVTGQAVSKWEKGNALPDTSFLPLLAGVLKTSIDRLLTGEEIAGKTSPYDQEYIKEEYYWGLKHSMLAEMTVNLCDKLKYGSRLLDIGSGEGRDSIYFAKCGFVVDALEISLPGIEKIKQYSNSESLPIHALHTNMIDYEMDHYYDVIYSMGALQFLPIGKRQQHFESYKKHTSIGGLNAHLVFVEKPFIPTAPDWQKNEFFYRSGDLAGYYYDWQIIYCEEQIVDCKSGNSPHQHAISSIIAKKI
>NC_015589.1|WP_013841109.1|1096769_1099172_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MTHRPLMTLILALAAGILAANVYPVHSAVALAIAAVALTAAGVGLWKAWRYNARVFFCAFLLLGFALTQIQFSIVQTSLLSFKDKAVKITGQVIDRPDVRFDGVFYKVQVSEVTHNNRTQPAGGVLRVKIRGQERVFQYGDWLTFSGVLRIPDPPGNPGAFDYRSWLTRQGITGIVNVKSPREVTVLGNQGRSLRQGAFGIRDRLEQIFDRTMTQTQAAVLKGMIFGTRGEIPPEVDAAFVESGLVHILSVSGFHIGLVAGLVLILLRIFRINKGFHAPVAIPLLLFYAVMTGMGPAVARSTFMAILLLLAHHFGREQDWPTTLAAAAGILLILNPLTLFDIGFQLSFLATWGLLYLTPVLTAGIPRLPQPLSLLVMVPLAAQLATLPLVVFYFNLVSPVSILANVLTTHLIALIMFFGGVSLLLGSLYLPLAAVTAGGTGLLTDFFLKLVAWCTSIPGAAFYIPAPSLGGILLYYALLIAGVELLRRPQWQAGLKEMLFYNGTKVLRKRAIMAGAVLIFVLFLWLLWPHSQRLEVHFIDVGQGDSALIITPDRRTMLVDAGGWREELTTGRGAGHYVVLPYLHRLGINKLDTLVITHPHEDHAGGAKALIRSMEVGAALVSPYGLEQEDKADQGYDLLLQDMKDRGIKIYPVREGNALNIDPAVTVRVISPGELFKNTRSDANNNSLVLLLNFRGRTVLLTGDTEVEAEEHILRENKNLQAEILKVPHHGSGYFYPEFFSSIRPRAAVISAGANNSFGHPAPNTLKALEEIHCPVYRTDLDGAVIFSTDGEKWQVITGK
>NC_015589.1|WP_013841108.1|1096112_1096766_+|lytic-transglycosylase-domain-containing-protein
MEASLLAQLIRLQALEQSLNSSAVDRQESSSRFTLMLARVMAAEKGTTANLGWNLNSTLQMAEVPYRYQSKVRASAKTAAAAFQAASGTGEYEALMERTALKYGVDPDLCKAVAKAESGFNPLATSKAGAMGLMQLMPGTAKSLGIDNPYDPEQNADGGVRYLKTMLQKYQGDVKLALAAYNAGPGAVDKHGGVPPYRETLNYVAKVSGYHQLYLGG
>NC_015589.1|WP_041275607.1|1095433_1096069_+|ComEA-family-DNA-binding-protein
MFNLGRREQAVLFIFMAVLLFTAGYRLAARDKGPAEPTVLSENNQREQQETGPVVYVVGAVEKPGVYKLPPGSRVNDALKLAVPLPEADLTLLNLAMVLKDEQRLAVAFQAEASEPETVPQAAPEGLSQPAGQAVMLKKTTAVSANSGLININTADETELDRLPGIGPALASRIIQYREINGSFQSIEDIKNVSGIGDKKYADLQSLITVQ
>NC_015589.1|WP_041275606.1|1094630_1095317_+|DUF421-domain-containing-protein
MALTYVWRTVIIYFSVLVIVRLMGKREIGQLSSFDFVVAIILAELAAIPMESEKIPIWHGIVPIATLGLLEVTFSYLTLLNRPLRKIVYGSPQVIIENGKLLKHEMRSSRYNLDDLLSQLREKGYPNMEDVEYAILETSGKLSVIPRSQKRPVTPEDLGIPTPYEGLPTVLVMDGDVLEENLQKVNLTEAWLKEKLAERGFHPKKVLLATLNTNGQLLIDCQNDDRQK
>NC_015589.1|WP_143758858.1|1094089_1094557_+|DUF2179-domain-containing-protein
MMLMRGRKVVASLIGFVEVTVFIVALGQVLTGGLDDPFKVIAYAGGFATGNFVGSLIEEWLAVGHLSMQVFPRPESVDELVNRFRGEGFGVSTVGCCGRSGERTILFVLLGRKNLKIALKILDEVQEGIFFNISDARAVRGGVFPGPKSRLLKSK
>NC_015589.1|WP_013841104.1|1091447_1093928_+|leucine--tRNA-ligase
MQEHYDFKEIEKKWQQYWEQENIYQVPDDSERPKYYCLEMFPYPSGKLHMGHVRNYSIGDVVARFKTMQGFDVLHPMGWDAFGLPAENAAIKHGIPPATWTWDNIEQMKAQLKQLGLSYDWRREVATCHPEYYRWGQWLFLQLYKQGLCYKKHARVNWCPACATVLANEQVVEGSCERCSATVEQKELDQWFFRITDYSQRLLDDLKKLEGWPDKVKIMQENWIGRSEGAELAFKVDGTDDEIKVFTTRPDTVYGVTYMVLAAEHPLVAKLSAGTPQEAKVAEFVNRVAKQTELARTSTEKEGVFTGAYCINPFNGEKVPILTANYVLYHYGTGAVMGVPAHDERDFEFARKYDLPIKVVITPSKEKALHPDQMTEAYVSAGFMIHSGPFDGTPNQQGIRKVIEYAEQKGIGQGLVNFRLRDWLISRQRYWGTPIPIIYCEQCGALPVPEDQLPVLLPTEVAFKPTGESPLKGDADFVQTTCPHCGGKARRETDTMDTFVDSSWYYIRYTSARDAQEAWNKAKAKGWMPVDQYIGGVEHAILHLLYSRFFTKVFYDLDLLDVQEPFENLLTQGMVLKDGAKMSKSKGNVVSPEDIVARYGADTARLFILFAAPPERDLEWSDRGVEGSHRFLNRVWRLVYSVKDQVIAAPPVRAENYIGVHKEMRRLTHYAIKKVTEDISGRFNFNTAISAIMELVNGAYTYRDKVAEVERDPAVLAEAINSMIILLAPFAPHVAEELWQETGHRGSVHKEPWPAYDPAALVEEEVEIAIQINGKIRDRMNISANLKPAEMQEILLQKESIQALIAGKQIVKVIPVPGKLLNIVVR
>NC_015589.1|WP_013841103.1|1089663_1091328_+|AMP-binding-protein
MQKLDRITVGALLDRTAAQFPENDALVYNHRDLRLSYQEFNRLCRKVAKGLMALGIQKGEHIAIWATNVPEWVTLQFTTGKMGAVLVTVNTNYKSFEVEYLLQQSDATTLVMIGGTKTTNYLKIINELCPELKDCPPGQLNSARLPLLKNIIFIGEEAQPGMLNWNDLLELANQITDEELDARQASLDPDDCINMQYTSGTTGFPKGVMLTHTNLVNNAHSIANCMAFSERDRLLITVPFFHCFGCVLGTMTCVVSGATMVPLEVFNPVRVLEIVDQERCTALHGVPTMFIMELEELAKGNYDVSSLRTGIMAGSPCPIEVMKAVVDRMGMKEITITYGQTEASPAITMTRTDDPIELRVATVGKVIPNVEAKIVDPETGEDCPPGIQGEICSRGYNVMKGYYKMPEATAQAIDQDGWLHTGDLGIMDEKGYFKITGRLKDMIIRGGENVYPREIEEFLYTHPLIKDVQVVGVPSMKYGEEVLAYVQLREGVTLTKEEIQDYCRDKIAKYKIPSYVLFIDHYPITASGKIQKYKLREQAITALGLENLTKIETA
>NC_015589.1|WP_013841102.1|1088922_1089279_+|ribosome-silencing-factor
MTLNPQQVLDIAYRAAEDKKATDITVLDIRHISIICDYFLICTGRSSTQVQAVAEHIQDQLEESGVRPLRREGFREGTWVLLDYGDVVIHVFQEMERSFYNLERLWGDAQVVEVSAKG
>NC_015589.1|WP_013841101.1|1088295_1088877_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-YqeK
MYNEESIKSHLQIRIPEERFKHLLGVAETAEMLAKRFGLEPRKAWLAGLLHDIARDFDDNEMLNRAKKANLQVSEYGFAMPLLLHGPVGAVMAREEFGVNDPDILNAIAVHTVGSPYMNQLDKIIFVADKMEPNRRHGAVEEIRKRAEKDLDEALLLCIDESIRYALKIGCLLHPTSVKARNAVLTARGSFRK
>NC_015589.1|WP_013841111.1|1102651_1103887_-|site-specific-integrase
MPSIEKRGKNTWRLTVETGTKTVVTKDGQTKVIRDRERKPIKVEDEALLRTTKKLREYLESEWHKFKAEVDSGTYITPEKATFKEFVDQHWRPKYASDPENLAPSSLVIYEQHLKTHIMPHFGHLRMDEIKNSHISDFKVYLRSPEARKDGKEGPLWNGTQRYILRVLRNVFVYAHEERKIIPANPCTGVRWPKKPETKIKVYEEEEVIQIIDALYRQPTIWRLLILGTFLGGFRRGEVVALEISDCNFGDNTIRIDENIPMKINRQHLIKRPKTNSSMRTVKMPSWYMRELEAYTKDWKKQMWSVGTKWKGGDRQFLFHRGYGIPYHPNTPTRWWREFLAKNGFRHLNLHGLRHTSATYLLEKGATTKSVQERLGHSSERTTAGYLHVTKKMEERVAQEFDRFDRHNTKP
>NC_015589.1|WP_013841112.1|1103978_1104443_-|ImmA/IrrE-family-metallo-endopeptidase
MLFERLLKEADEHNIRVYENPLSSKIKGLYGDGIVWLNRRLPTSIEKSCVLAEELGHYHTSSGDILNQKDIRNRKQEKRARNWAYEKLVPLEKFIEAYEAGVCNRYELAEFLDVTEEFLEQAIVHYKEKHGLFIQVGKHLVYFEPFGVFHLFNE
>NC_015589.1|WP_013841114.1|1105284_1105488_+|helix-turn-helix-transcriptional-regulator
MQYSEFGLKARRVMLQKKISGAAIARQLGVSTSYVSEILKGTRSGNGRKEQIAEILGLEEELKKEAN
>NC_015589.1|WP_013841115.1|1105488_1106160_+|Rha-family-transcriptional-regulator
MSKLILNPEFNLYERNGQAFCSSRQVAESFNKRHDHVLRDISNSLSVFKEIGDPKFGETNFMFTTYKDSQNKRQPEVLMTRDGFSYIAMGFNGKKAARFKITYIKRFNDMEAFIKSLLATKMEFPAFTDAIMAAHEEPKHYHFSNEINMIYRIVLGVDAKKFREENGIEKGAVIKPYLSLEQIKAIETLQRVDIGLIVAISDFQQRKETLAGYFERIKRKWIA
>NC_015589.1|WP_013841116.1|1106178_1106481_+|helix-turn-helix-domain-containing-protein
MTPLDHLYETLIQTAAAEAERRVLERIQLQSIVPDRTLSLKEAAEYVHISESALRQLCKEKRIPHRINGSDGSKNPRYLFSSLRLDRWMREEEEKNYQQR
>NC_015589.1|WP_013841117.1|1106498_1106870_+|hypothetical-protein
MAKIYPFPNQAARALIHSVIQLYAAGKWTRQQMMDRIHQTMKQYGCTTLHFENFTVRITEPVVTSMGQFNVAIIESHSISSRLGCPVCYSAEAGYLAGDKVITVACRDCGCIYRFREKEVKKG
>NC_015589.1|WP_013841118.1|1106866_1107328_+|sporulation-initiation-factor-Spo0A-C-terminal-domain-containing-protein
MNPTNTPQILEDLKVTAEKFLAIYPEICALVAAQPATTQPVEPEPTIESEEHRISRLLQTLGAPLHIKGYRYLSTAIQMVSKDHLLLFAITKELYPAVAKAHDTTPSRVERAIRHAIGLMADKCNDFYAKSFDDQPTNSEFLAWCVEALKFQA
>NC_015589.1|WP_013841119.1|1107505_1108105_+|hypothetical-protein
MEKFILTEVTREYLGVTLYQIKATRSFGNVKAGELGGWVEKAENLSQEDDAWVFGNARVSGNARVSGNARVSGNARVSGNARVFGDAWVFGDAEVFGDAEVFGDARVSGNARVFGDAHITSRAHIAWFSSVGSEYGTLTAYMTKQGVVEVTRGCFHGSIDTFEAAVQQTHGESRHGQEYMLLIQFIRLRFKGVIVENAS
>NC_015589.1|WP_013841120.1|1108272_1108665_+|hypothetical-protein
MNITLHIEAADPAELQVAIAGLAGITGGASAPQPEPEKPKKKKQEKAAETKPAPETEAEPVEEPGTEETEETTDTPEITLEQVRAKLAALSQAGKQVQVKKLITDFGAAKLTEIPEEKYPKLLAAAEKLA
>NC_015589.1|WP_013841121.1|1108661_1109840_+|DUF2800-domain-containing-protein
MSAPQAHAVLSASGSGRWMACPPSAQLERQFPDETSEYAAEGTFAHSLAELHLAHYLGYTGMIVFNQNLKKLKGNPHYSQDMEDYIQDYRDLVIERINEARTRTKDLIVLLEQRLDYSPWVPDGFGTGDVVIIADKTLDIIDLKYGKGVPVSAENNSQMRLYGLGALHQFEHLYDIETVRMTITQPRLDSVSTAEMTAEELLAWAEKVVKPLAKMAIAGEGTFSAGDHCRFCKARYTCRERANANLKMAQYDFREPPLLSHDEIAAVLSKAEELQKWTSDVQNYALEQAEKHGVKFPGWKLVEGRSNRKYTDKDAVATILLAEGYKEGDIYKPKEILGITDMEKTLGKKRFNQLLHDHVIKPAGKPTLAPETDKRTEINSIDSAKADFNEAV

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Crispr_ID: NC_015589_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_2

1143003-1143369

Orphan

Consensus_repeat	Method
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CRISPRCasFinder
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	CRT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	PILER-CR

5 spacers

The CRISPR arrays of NC_015589_2

>merge|NC_015589|2|1143003-1143369|CRISPRCasFinder,CRT,PILER-CR
GTTCTTACTCCTTATAGGTAGGCTAGAAACTCCCGTAAATCATAGGAAGCCAAAGCGTTACCAATGTTTCAAATCCTTATAGGTAGGCTAGAAACGTAATTGCTCGTTTAGATCAAAGATTAGCAGCATTAGTTTCAAATCCTTATAGGTAGGCTAGAAACTCCCCTCCCAGATCACCTTCGCTTCGCCTTGTGCCCACGTTTCAAATCCTTATAGGTAGGCTAGAAACTGGAACCACTAAAACCATGGATGTTTCTCCTGAAATAAGGTTTCAAATCCTTATAGGTAGGCTAGAAACGAGCAATATCCAGGCATGACGGTCACGTTTAAAATTCAAGTTTCAAATCCTTATAGGTAGGCTAGAAAC

>NC_015589|2|2|1143003-1143369|CRISPRCasFinder
GTTCTTACTCCTTATAGGTAGGCTAGAAAC	TCCCGTAAATCATAGGAAGCCAAAGCGTTACCAAT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GTAATTGCTCGTTTAGATCAAAGATTAGCAGCATTA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TCCCCTCCCAGATCACCTTCGCTTCGCCTTGTGCCCAC
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TGGAACCACTAAAACCATGGATGTTTCTCCTGAAATAAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GAGCAATATCCAGGCATGACGGTCACGTTTAAAATTCAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC

>NC_015589|2|2|1143003-1143369|CRT
GTTCTTACTCCTTATAGGTAGGCTAGAAAC	TCCCGTAAATCATAGGAAGCCAAAGCGTTACCAAT
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GTAATTGCTCGTTTAGATCAAAGATTAGCAGCATTA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TCCCCTCCCAGATCACCTTCGCTTCGCCTTGTGCCCAC
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TGGAACCACTAAAACCATGGATGTTTCTCCTGAAATAAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GAGCAATATCCAGGCATGACGGTCACGTTTAAAATTCAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC

>NC_015589|2|2|1143068-1143369|PILER-CR
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GTAATTGCTCGTTTAGATCAAAGATTAGCAGCATTA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TCCCCTCCCAGATCACCTTCGCTTCGCCTTGTGCCCAC
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	TGGAACCACTAAAACCATGGATGTTTCTCCTGAAATAAG
GTTTCAAATCCTTATAGGTAGGCTAGAAAC	GAGCAATATCCAGGCATGACGGTCACGTTTAAAATTCAA
GTTTCAAATCCTTATAGGTAGGCTAGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013841155.1\|1142126_1142582_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841161.1\|1147825_1148590_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NC_015589.1\|WP_013841163.1\|1149644_1152551_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340856
NC_015589.1\|WP_013841159.1\|1145535_1146981_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|211988
NC_015589.1\|WP_013841150.1\|1139131_1139527_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|227161
NC_015589.1\|WP_013841149.1\|1134897_1139130_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376276
NC_015589.1\|WP_013841145.1\|1131711_1131876_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841158.1\|1144468_1145287_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133382
NC_015589.1\|WP_013841165.1\|1153129_1154185_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NC_015589.1\|WP_013841157.1\|1143936_1144290_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016
NC_015589.1\|WP_013841152.1\|1139809_1140538_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_015589.1\|WP_013841154.1\|1141002_1141962_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226612
NC_015589.1\|WP_013841156.1\|1143616_1143940_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016
NC_015589.1\|WP_013841160.1\|1147163_1147772_+\|DUF3298-and-DUF4163-domain-containing-protein	unknown	unknown	gnl\|CDD\|378702
NC_015589.1\|WP_013841151.1\|1139529_1139817_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841148.1\|1133460_1134888_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429
NC_015589.1\|WP_041275316.1\|1152566_1153097_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179157
NC_015589.1\|WP_013841147.1\|1132606_1133449_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841146.1\|1131933_1132560_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841162.1\|1148747_1149530_+\|sulfotransferase-family-2-domain-containing-protein	unknown	unknown	gnl\|CDD\|367564

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013841161.1\|1147825_1148590_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	7.58844e-08
NC_015589.1\|WP_013841159.1\|1145535_1146981_+\|cardiolipin-synthase	gnl\|CDD\|211988	TIGR04265, bac_cardiolipin, cardiolipin synthase. This model is based on experimentally characterized bacterial cardiolipin synthases (cls) from E. coli, Staphylococcus aureus (two), and Bacillus pseudofirmus OF4. This model describes just one of several homologous but non-orthologous forms of cls. The cutoff score is set arbitrarily high to avoid false-positives. Note that there are two enzymatic activites called cardiolipin synthase. This model represents type 1, which does not rely on a CDP-linked donor, but instead does a reversible transfer of a phosphatidyl group from one phosphatidylglycerol molecule to another.	7.85042e-180
NC_015589.1\|WP_013841150.1\|1139131_1139527_+\|phage-holin-family-protein	gnl\|CDD\|227161	COG4824, COG4824, Phage-related holin (Lysis protein) [General function prediction only].	7.11667e-39
NC_015589.1\|WP_013841149.1\|1134897_1139130_+\|hypothetical-protein	gnl\|CDD\|376276	pfam18857, LPD38, Large polyvalent protein associated domain 38. This is an alpha and beta fold domain found in polyvalent proteins of phages and prophages.	6.90151e-49
NC_015589.1\|WP_013841158.1\|1144468_1145287_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133382	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	5.39748e-39
NC_015589.1\|WP_013841165.1\|1153129_1154185_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.94023e-16
NC_015589.1\|WP_013841157.1\|1143936_1144290_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	3.19122e-38
NC_015589.1\|WP_013841152.1\|1139809_1140538_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.61388e-76
NC_015589.1\|WP_013841154.1\|1141002_1141962_-\|hypothetical-protein	gnl\|CDD\|226612	COG4127, COG4127, Uncharacterized conserved protein [Function unknown].	0.00169639
NC_015589.1\|WP_013841156.1\|1143616_1143940_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	6.95952e-44
NC_015589.1\|WP_013841160.1\|1147163_1147772_+\|DUF3298-and-DUF4163-domain-containing-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	7.60654e-19
NC_015589.1\|WP_013841162.1\|1148747_1149530_+\|sulfotransferase-family-2-domain-containing-protein	gnl\|CDD\|367564	pfam03567, Sulfotransfer_2, Sulfotransferase family. This family includes a variety of sulfotransferase enzymes. Chondroitin 6-sulfotransferase catalyzes the transfer of sulfate to position 6 of the N-acetylgalactosamine residue of chondroitin. This family also includes Heparan sulfate 2-O-sulfotransferase (HS2ST) and Heparan sulfate 6-sulfotransferase (HS6ST). Heparan sulfate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development. Heparan sulphate 6- O -sulfotransferase (HS6ST) catalyzes the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate.	0.00103189
NC_015589.1\|WP_013841148.1\|1133460_1134888_+\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.09557e-05
NC_015589.1\|WP_041275316.1\|1152566_1153097_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179157	PRK00889, PRK00889, adenylylsulfate kinase; Provisional.	1.03168e-75
NC_015589.1\|WP_013841163.1\|1149644_1152551_+\|glycosyltransferase	gnl\|CDD\|340856	cd04950, GT4_TuaH-like, teichuronic acid biosynthesis glycosyltransferase TuaH and similar proteins. Members of this family may function in teichuronic acid biosynthesis/cell wall biogenesis. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	2.10595e-75

>NC_015589.1|WP_013841155.1|1142126_1142582_+|hypothetical-protein
MEEKILGFFNAVQDLKKAGIIRSDKYLGDIGEYICEQLYKIKLSDSKREKGYDGIAEGKKYQVKFHNSQTRTNIYLGKPKEYDIVLVVLGPESLLRKGLNCVDSFIVYKFTSSEVEKFKNKSGYSCGKAQFKEDNIDKKYNIPSLQPCHLQ
>NC_015589.1|WP_013841154.1|1141002_1141962_-|hypothetical-protein
MFTEGIPVLSEDTHYWFFRTEGGSFFDQFYFEDFIAYGWDEFIDLKYIKETEKEKFKSDFKELCKEEKRPGLAVNQMKLFVEQMKIDDIVFIPSEGSEYIAFGVIASDAEIVDAISEQDIENGKCPYRKRRKVNWYKYSKKSEIDPYLFKPMCAINTITDATEYAPFIDRMIYPIYIKDGIGHLSIYVKKQNNISAREMSRLIDRVLSLLELPPTESPLVNTDEIDVRINVQSPGLFEFIGGAAAIFALSAILRQYILGGTTEMKIGPTGINFKIEGQGILDAILKHKEFKARQAQELKETMERLDAELPRQLNDNNEQ
>NC_015589.1|WP_013841152.1|1139809_1140538_+|N-acetylmuramoyl-L-alanine-amidase
MPKIVMLDPGHGGVDPGAIGPTGVREKDITLAVAQRVASILSPVVDVRLTRDTDTSYSHVTSTDLSIRARLANQAGADCFVSIHCNSATNNTAGGTETYHYPGSILGNTLAKAVHTCVIPALGRVDRGIKTANFAVLRETNMPACLVEMAFISNPTEEALLGSAAFQETAATAIAQGIAEYLGLDLPEPVEPGTVRIIVGDGDQVLTGLLIDDRSYAPVRDMAEALGWTVEWDERSKTVTIK
>NC_015589.1|WP_013841151.1|1139529_1139817_+|hypothetical-protein
MPKKFRKKPVVIEAFQFGMQERSDLPIWAKEALQSGSIKAFSQYGGTVRWAEIETLEGVHRAEVGDYIIKGVKGELYPCKPDIFHMTYEEVDNHA
>NC_015589.1|WP_013841150.1|1139131_1139527_+|phage-holin-family-protein
MDWGNICKTVVAIGGAITTYLYGGWTSILGVLVAFVVIDYITGLMAGAVGEGLSSAVGFKGIAKKICLFAVVAVGHLVDTAIGQGNIIRDAAIFFYMANELISILENCGRLGLPVPKILQDAGTVLKKKGE
>NC_015589.1|WP_013841149.1|1134897_1139130_+|hypothetical-protein
MSLSKNDWLTLINSEAGVANKAKKKKEQQKAAPTSVADFRKLDQETQKEIPNPVAPGLSPEFAKAHPVVNKALFNFRVQSDTQKPDNALYRGLEQFYSGFDDAISFGLLPRFDRWMGQAAPEPQTRAQGIIRGAGELSGSVLPVSKLYGAMGKVTGRLPEATSTVGRLAQTGLTGGLAGGAYGALEGLGSGMSPNEIARNTALNAALFAGGDVALKGAGLAYNTLSKANAMETLRNLDLSPPLPGQRSGALIEPPRLEPMPTPKLPEIQAMVKPTGREDVNRFIDEAMVTRKEAKTLPLRKVTDEEAARIKELTGFDVSGYTHQLSNQDLWHAIKRHGNAAVEAKRGQIPVTDKDLKAIPDIINSPDDLLRGNGKPSIIYRKRVNGTVYYVEVVFSKNKILQGKTMWKKPSATDYSDISTTPLHTSETGSSLTSSNSNIKPGLKDVNNPEGDLFRISRGGPAYGSSSQGAVKRSDIVKLLKEKLEVPIRTGRYPTAGGQVLGVFKTRPEVIRSRTANDLPTIAHEVGHVLDKRLGLQNPAHDGELMKLGRASSRSSYTPEQVRAEGVAEFMRLYLTDTVQAARLAPGYYRAFEEVVGKNKDIQRVLLQARKGIETWYNQSPEARVDGVISTGEKTLRQQISGLKNVPEQAKKLYAGLVDDLDPLRRATKELNPNLSAAESPFELARTARGWVGKAETLLNYGVLDGAGNKVGKGLKEILRPVEKDLAGFRRYIVAKHAQEINAQKMSTGIRKEDADAVVAGAPLQYRQALEDLVKYQDAVLNQLVEAGVMTPQSVKAMREKYPNYVPFYREFPENPEAALGFLTGKGYANLKNPIKRMKGSQRDIIDPLESIVKNTYLFTQLAEKNKVGRQLAELAEKHEGMGWLAEKVGGNRSAKENVLTIYRNGQPEQYQLQPDLYRAMLALDTESMSTVVKLLSFPASTLRAGAVLSPDFIPRNVVRDQFSAFVNSKYGFVPVVDTLRGLFHAVKKDEVYWQWMNSGGAMSTLVSLDREYLQRNLRQLMRKSAKDIAAMPFNPKTYLDMLRTLTEYGELGTRLGEFGKGIKKGATPMEAALASREVTLDFGRMGYQMKNWNRITAFLNAQVQGMDKAIRQFKANPVGSTIKSLVSITLPSVILYERNKDDPRYQELPQWQKDLFWIVLTDDHVLRIPKPFELGVLFGTLPERILAQMDGKEDAFKGFGETLKDLLPDVRPTALTPAYEVASNYSMFTDRPIVPQREQNLEPWQQYGPYTTELAKAVGKATNTSPRKVEHLIQGYGGGLGRYATQLVSTGMEGDGIPRPKKDITEYPGIKAFTVTPYAGSQSIDDFYDRLGELERSYSTARQAGKAKTPPAELSRLRRFSEQLSELRKKEREIQNNRTMTPERKRAALDALDKQSVNVARKALKREGI
>NC_015589.1|WP_013841148.1|1133460_1134888_+|hypothetical-protein
MADPYGSEKAFREANGLSPKKSSSGSSSGSSGSGSSSKSKSSGGSSGGGGSSGYAYKDKYGFTHVVSDYNTAKQYSGDGNVYSYSGSYGGGYAKDAKGNRYNLPISGATPFGNGSGVSGGGSYLGGLITAPTPATPKTAYSNYVYNASPSATNSLASQYPTAPTLPQKAAPTVPTISKTTPTLPTLPSVSNLLPLRDTFESRGYGVQYDNGNIHVYDKTNNNVLGTFNKDAYSLQGDKAYFDPSITKRLMELTSGSTPQLDKTFSMPTVSLPEIETKYPEVPVPYIDPQNLFQYQPFQQMQPNFTITSDGNETWTPTLNAVNQWYSRQDQLRSDYLSNWYQQQALAQQQAALDWEKEMYNSPYNKALQDMDLEYKRAQIEAQQALELQRIAAANRPSSSRSSSTTTKTPSASTQADAIIQSRMSSFMRPVDFAAQIQREVESGQISASVGSAVLDKLYKMYPTEEALMQNLSTWK
>NC_015589.1|WP_013841147.1|1132606_1133449_+|hypothetical-protein
MAYTPLTRDQYIQQQNEYAQKTYQNQYDAQKTALQQAYDRNRLGFDSSRTSIQNAYTQGGNRLNELRDQAQADYSAGANSINEQKAAQTPLYQQSRNAASVNAAQSARKLSELMAAKGLSRGGSFLSGQAGIQNQRAAEIGDVNRQEGLFNAQMANRLAELEQARANSLGAIGNRSAELEQTYMGDLNNLTKQEQLYGQQYSDSQRALQEALANQIAAAGLQAPLQYEDYYNQQLQNSLALAGFAWGNLSDYAAQTGNFGMPKDYKPGDFLNQFYNQWYK
>NC_015589.1|WP_013841146.1|1131933_1132560_+|hypothetical-protein
MRKFLLAMVLVLSFALPSWAGPALIINGALYPNAQTIEQDGMVYVPVQPTAEAIGYEVGFEDGAVKIWQQLKEPQIIGDSHFQEVVGQAIGLLRENEPVSYVNLCQYVDTIELSEQQGRDGHNNGGRQVYLTRELYDSDRFIPVYVAATIVHETVHAMQFGWGFNRVMTENALEYEAYGHDINILTQLNAPQWMIDGIVTSQNKYKPN
>NC_015589.1|WP_013841145.1|1131711_1131876_+|hypothetical-protein
MIVYIYAQLDEQNICVGLSRLSGVTDLPYMVLIEEFNPDLLGKQWDGEKFLDSA
>NC_015589.1|WP_013841156.1|1143616_1143940_-|YnfA-family-protein
MIKSFLLFILAGLAEIGGGYFIWLWLREKKSFLFGFAGGLILFLYGIIPTLQDYPHFGRVYAAYGGIFILLSLLWGWGVDKKKPDFYDWAGSAIALIGAAIIIWTPR
>NC_015589.1|WP_013841157.1|1143936_1144290_-|YnfA-family-protein
MFIRSTVLFLLAGLSEIAGGYFIWIWLRYDATLLWGVLGAVVLVLYGIIPCFQRFPNFGRIYAAYGGVFVVLSIFWGWWIDGSQPDFFDWLGTLIVLGGTTLMLWAPRKQPGKEAVK
>NC_015589.1|WP_013841158.1|1144468_1145287_+|MerR-family-transcriptional-regulator
MFRIGDFSRLNKISIHTLRYYDELGILKPAKIDEQTGYRYYSAEQLPRLNRILLLKDVGFSLMDITGMIDQELTTHKVVTMLNQKALEMKEKIERQQEKYLRLQILINKITEGVQNKMFNYDVVIKEVTALKVASIKESIEEFSKQGDLWEELITYLYDHHIKPTAPCIAIYYDEDYKEDNINIEVAAYITGNLPETERIKVRTLEPVKEMACVVHKGNNENLAEAYNELQKWIEKNGYQMNGPIREVHLEGYWSNPNPNEHVTEIQIPVTR
>NC_015589.1|WP_013841159.1|1145535_1146981_+|cardiolipin-synthase
MEFFEVIYLLIYLVNILTAAVVIFIERRNISTTWAWLFVLVFLPVLGFFLYIIIGQNLSRLKLYKLKGRDVSLIQELREEQKRKIKTREIYFKDLAVERYTDLIYLNLTSSNATFTQDNCVKIFTDGQSKFAALLDSIQQAKDHIHLLYYILRNDELGRKIVQALIAKAKEGVKVKVLYDDVGSPRLDRKLLRPLKEAGGEIAAFFPSKIPYVNIRLNYRNHRKIVIIDGKVGYIGGYNIGNEYLGTNKQIGSWRDTHLKITGSAVQSLQAQFCLDWNLSSASQLTFCHSNFPSLDIQGDVGLQIVSSGPNSELQQIKDAYLKMIYTARESIYLQTPYFVPDEGFLTALKIAAMSGVDVRIMIPQKADHRFITWASSSYLGELLKSGVKCYLYKTGFLHAKTIVVDNKIASVGTANIDIRSFKLNFEINAFIYDSRTSSLLKNSFMKDIDNCFELTWETYHNRPMRLRLMESLIRLLSPLF
>NC_015589.1|WP_013841160.1|1147163_1147772_+|DUF3298-and-DUF4163-domain-containing-protein
MREDELVATIVERRTQQSPCVDIVYPQVEGLPNKKVQREINQLIEKQANKLFAGEGCDGVTVTGNYAVKLNQKSLLSIRLEAYLYRQGAAHGMTLANSLTVDLKTGKVYGLKDLFKSNSHYIYKISEMIKAQIKERDLPLLREFNRITDRQDFYLTKDALVIYFQIYDYTPYVVGIPEFVIPLRRVERLAKEDSPIQRLLAR
>NC_015589.1|WP_013841161.1|1147825_1148590_+|methyltransferase-domain-containing-protein
MKKICFQCNICGEICDSDFSQLSREEISCFRCGSTVRMRAIIHLLSMSLFGNSLALPHFPVNDKIKGLGMSDWEGYALPLAQKFNYVNTFYHQEPRLDIVKVEPKWHNQFDFIISSDVFEHVPPPVHIAFENVRKMLKPGGTFIFTVPYSKLSQTTEHFPDLFDYEIIVEKEQKKLINVTRDGHKQVYENLIFHGGSGATLEMRVFSEASLLVHFQEAGFPIVKIHGQSNLKYGIHWEQQWSLPITARVGDLSL
>NC_015589.1|WP_013841162.1|1148747_1149530_+|sulfotransferase-family-2-domain-containing-protein
MYAENSRTQRKVILHIHFFKNAGTTIDSILEKNFGQSLAYLEGDSATDKVSGERIIRFLGEHPEIKAVSSHQAEYFLPDDLNYMIYPIFFLRHPLDRVGSVYSFVRRMNLESKETQWARKEIRDFVTFFLSDEGGLIIKNFHVARILNISSMPGDALNYLEQAKQCLHRSPFFGIVERFNDSLLLLQKMLNQPFPGLDFSYKRQNVSIERETTLQERLQSLEERLGQDVFRQLVTGNSLDLELYDYALRLFDERFKAMTR
>NC_015589.1|WP_013841163.1|1149644_1152551_+|glycosyltransferase
MVLNPLTLPFDQYQRYRMVADIIGALKGAEPCSILDIGGYPGTIKAFLPQEQITIADLTEEEEEGLVQADGRNLPFADAAFDYVISCDTLEHVPASDRNGFVKEMIRTGKKYLIIAAPFDSPGVTQAEDFFSGLFKARYGDGYYFMEEHIAYGLPNLDRTTRYLQEAGLKTLVLPNGFLPRWLIGISLFFLLQWKFQDQELLNQFNTYYNSNFYLLDNCEPSYRKVIIATKDPADPAFKRLAESVKEIFEAPKDSMDMNQALEMINIFIQIISDEWSERALDAEETQEILTLEVEELKKQLKLCQESLIKSQRKNLLRSRLKNEVKKLVLRNNQTLYRVFREKSRQRVKYDVIVFPIIDWDFRFQRPQQMASQFAKNDHRVFYISTGFIQGPSYKYFSKGKNIYQVQLAGTPEVNIYTDEIKDYVEELYQSFEQLIAEKEIRNAVLLVQLPFWKDLALALREKYRFKVVYDCMDKHSGFSTNKNSMLNQEEDLSKQSDLVITTSLDLFNEHRKLNKNCILNNNATNFNHFCSPINGIAGQIAHLPPPIIGYYGAISDWFDTQLVAEMAKKQTNWTFVLIGSTFGADLSPLAGINNIKLLGEQSYASLPGFLHAFDVCIIPFKVLPLTNATNPVKFFEYLSAGKPVVSVALPELLPYEQEELVYIAGDSEQFIEKIKQALDTNSHTRRVARMNFAQKHTWEARFLEISLALQGLYKKVSIVIITYNNLHLTQLCLESIFKCTHYPNYELIIVDNHSFDGTVKYLKDLKKKRSDVKIKLNNRNEGFAKANNQGMQMAEGEYIVLLNNDTIVTSHWLTKLIGYLEKYSEVGMVGPVTNCSGNESKIDVTYTSIEDIEEFARQYTEDHEGCFFEIKMLAMFCVAFRRTLLDEVGLLDEQFGIGMFEDDDFALRVKERGYKLICAEDIFVHHFLNASFKLLGQQKYLEIFQENKKKFEKKWGISWQPHCYREK
>NC_015589.1|WP_041275316.1|1152566_1153097_+|adenylyl-sulfate-kinase
MTEAMFTIWLTGLSGAGKTTLSALLAEELCRKGYKLELLDGDQLRGGISRDLGYGKEDRIKQVQRVGYLCELLNKHGVVTIVSLISPYRDSREVLRTKIKHFVEVYMKCPLETLLGRDPKGLYKKALAGEIKSFTGISDPYEEPLRPEITVFSDQETPHQGCEKVLQRLLELELID
>NC_015589.1|WP_013841165.1|1153129_1154185_+|class-I-SAM-dependent-methyltransferase
MKDIKEFFSLLFSQEAKEAWQEYLQQFEGNYEVFWHQMERNLSEEELMRMFRIMLMITGKGLFPFERRVRLFELAESMGMHIMPDHFYEPVPNTLALNQEAWQVYDARGMELDGEKQLDLLQEMAEFIREMEDTPHEMPAAGCQYYFNSPSFCPTDAVFYYAVLRYFRPQRVFEIGCGHSTLVAARAAAKNGGMELTCVEPYPAEYLKKDLGISCRLIIKKVQELPLDTFQQLQANDVLFIDSSHVSKIGSDVNYLLLRVLPLLNPGVIVHFHDIFLPDEYPEHWIKEKKIFWNEQYLLHAFMLFNADYEVLLANHYLGKYHKPQLQRLMPKAPSHGGGSFWIRRKVKARQ

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Crispr_ID: NC_015589_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_3

1204717-1204827

TypeIII

Consensus_repeat	Method
ATAGCTCAATGGTAGAGCAACCGGCT	CRISPRCasFinder

1 spacers

cmr1gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5

The CRISPR arrays of NC_015589_3

>merge|NC_015589|3|1204717-1204827|CRISPRCasFinder
ATAGCTCAATGGTAGAGCAACCGGCTGTTAACCGGTAGGTTGTAGGTTCGAATCCTACTCGGGGAGCCAAAATTATCAAGGGCCTATAGCTCAATGGTAGAGCATCCGGCT

>NC_015589|3|3|1204717-1204827|CRISPRCasFinder
ATAGCTCAATGGTAGAGCAACCGGCT	GTTAACCGGTAGGTTGTAGGTTCGAATCCTACTCGGGGAGCCAAAATTATCAAGGGCCT
ATAGCTCAATGGTAGAGCATCCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013841216.1\|1201676_1203500_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_015589.1\|WP_013841211.1\|1198566_1198884_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	unknown
NC_015589.1\|WP_013841209.1\|1195317_1197975_+\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NC_015589.1\|WP_041275624.1\|1205371_1206442_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	cd09657_cmr1gr7_CAS-III-C	gnl\|CDD\|273859
NC_015589.1\|WP_187290644.1\|1194415_1195225_+\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|377080
NC_015589.1\|WP_013841224.1\|1213089_1213365_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|198034
NC_015589.1\|WP_013841223.1\|1212072_1212942_+\|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	gnl\|CDD\|377130
NC_015589.1\|WP_013841219.1\|1206443_1207802_+\|hypothetical-protein	cmr6gr7	mkCas0142_cmr6gr7_CAS-III-C	gnl\|CDD\|377130
NC_015589.1\|WP_013841221.1\|1210656_1211691_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_015589.1\|WP_013841222.1\|1211665_1212067_+\|hypothetical-protein	cmr5gr11	mkCas0060_cmr5gr11_CAS-III-C	unknown
NC_015589.1\|WP_013841217.1\|1203496_1204597_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|236413
NC_015589.1\|WP_013841207.1\|1193739_1194375_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|341387
NC_015589.1\|WP_013841210.1\|1198295_1198583_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_015589.1\|WP_013841215.1\|1200468_1201473_+\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|234934
NC_015589.1\|WP_081462059.1\|1213364_1213628_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841214.1\|1199854_1200463_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NC_015589.1\|WP_013841226.1\|1213974_1215864_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_015589.1\|WP_041275625.1\|1216028_1216721_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|378972
NC_015589.1\|WP_013841213.1\|1199221_1199812_+\|RNA-2',3'-cyclic-phosphodiesterase	unknown	unknown	gnl\|CDD\|274058
NC_015589.1\|WP_013841220.1\|1207798_1210642_+\|CRISPR-associated-protein-Csx11	cas10	cd09701_cas10_CAS-III-C	gnl\|CDD\|187832

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013841216.1\|1201676_1203500_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_015589.1\|WP_013841209.1\|1195317_1197975_+\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NC_015589.1\|WP_041275624.1\|1205371_1206442_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|273859	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents the region of stongest conservation, the N-terminal half, of one such family, represented by TM1795 from Thermotoga maritima. This protein is the first of a set of six genes, mostly from the RAMP superfamily, that we designated the CRISPR-associated RAMP module.	6.99526e-14
NC_015589.1\|WP_187290644.1\|1194415_1195225_+\|kinase/pyrophosphorylase	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	6.06325e-148
NC_015589.1\|WP_013841224.1\|1213089_1213365_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|198034	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain. This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA-binding activity in this AbrB homologue requires hexamerisation. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.	1.62101e-08
NC_015589.1\|WP_013841223.1\|1212072_1212942_+\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.84426e-05
NC_015589.1\|WP_013841219.1\|1206443_1207802_+\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	0.00478113
NC_015589.1\|WP_013841221.1\|1210656_1211691_+\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.23713e-33
NC_015589.1\|WP_013841217.1\|1203496_1204597_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	0
NC_015589.1\|WP_013841207.1\|1193739_1194375_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|341387	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	2.76187e-64
NC_015589.1\|WP_013841210.1\|1198295_1198583_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.57174e-05
NC_015589.1\|WP_013841215.1\|1200468_1201473_+\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|234934	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NC_015589.1\|WP_013841214.1\|1199854_1200463_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	5.90989e-40
NC_015589.1\|WP_013841226.1\|1213974_1215864_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.02584e-64
NC_015589.1\|WP_041275625.1\|1216028_1216721_+\|SAM-dependent-methyltransferase	gnl\|CDD\|378972	pfam12847, Methyltransf_18, Methyltransferase domain. Protein in this family function as methyltransferases.	3.2506e-77
NC_015589.1\|WP_013841213.1\|1199221_1199812_+\|RNA-2',3'-cyclic-phosphodiesterase	gnl\|CDD\|274058	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing].	1.06464e-50
NC_015589.1\|WP_013841220.1\|1207798_1210642_+\|CRISPR-associated-protein-Csx11	gnl\|CDD\|187832	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, inactivated palm domain and Zn-ribbon; signature gene for type III.	0

>NC_015589.1|WP_013841217.1|1203496_1204597_+|RNA-polymerase-sigma-factor-RpoD
MRDEVKVELVKELIEKSKKRGVLSYNEIMDGLQGADLTADQIDDIYEKIASMGIEVVPEVTDLEPLEVDDAADGPAEEVEVEVDLSIPEGIGIDDPVRMYLKEIGRVPLLSPEEEVELAERMEAGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAKEMEISGEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDADARAPAEEASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYLD
>NC_015589.1|WP_013841216.1|1201676_1203500_+|DNA-primase
MSSLISEDIIEDIKQKSDIVEVISQYLSSERRGKNFVARCPFHQEKTPSFNINPEKQIFHCFGCGVGGNVFKFIMMVEGLSFPEAVRFLGAKAGVMIPEERSPRDLARQNKKNRALEIYGLVRDVFRFWLSKEVGLSAVQYLEKRNLSQEVRETFQLGYSLPGWDHLVRFLNSKDISSEELAKLGLIQAKETGRYFDRFRDRIMFPIWDTQGRVVGFGGRTLGDDTPKYLNSPEGEYFNKGQLLYGLHIARRGIREQGFAVLMEGYLDVVSTYQHGVTNAVASLGTAFTREQGKLLMNYTHQAVVAYDADEAGIKAAIRASEILQELGCQVRIASIPEYKDPDEFIQRHGLAGWSKIIDAALPLVHFKLTQAVKKVGLKNSTAKRSILQEVLPNLAAVASPLELEEAVRYTATVLQLNWETVLAEIKAYKANNRKKYQNRHNTAENSHNIASNSHHRMQQTPQDARTAAEAGLLRLALEDKTWLDRMVAELGKDFFQNPVYQEIFNRILNQNLGQDLLNRMDQLEESQQRVLSKLLVQEIPRDDLVQIFSDFVLTIKKSSQKARLEDLLVQLATAERLGDTEKVLFLRRQVNLTIMKSEGPERGVAT
>NC_015589.1|WP_013841215.1|1200468_1201473_+|deoxyguanosinetriphosphate-triphosphohydrolase
MKDIRLQTEELEQQILSPFACQSRESRGRERPEEPCPVRTVFQRDRDRIIHSKAFRRLKLKTQVFIIPEGDHYRTRLTHTLEVAQIARTCAKALRLNEDLTEAIALGHDLGHTPFGHAGEQVLNRVFAPGFRHNEQSLRVVERLEGGHGLNLTKEVRDGILNHTGPMKPLTLEGQVVKIADRIAYINHDIDDALRAGVIQQAQLPPDCLEVLGLRHSQRINTMVLDLIRSSQDQGEIKMSPEVRGAVDKLRTFMFENVYIGSEAKMEENKARYIVESLFAYFCKQPAALPRDLLIRTNSEEIPRVVVDYIAGMTDRFAVALYKKLFIPEGFPLD
>NC_015589.1|WP_013841214.1|1199854_1200463_+|flavodoxin-family-protein
MLIVGLNGSPNADGNTAFLLKEALRAAEELGAETKLVQVAEIVITADPLFCDACTTPCAGVCYEGTPLQELFTLLQSADGIIMGSPVYFGTVASPLKLLWDKSRALRKEKALVDVVGAAVAVGTSRFGGQESTVRALQEIMLVHGMTVVGDGSYHTDPGHQGVCVQKPAAKDPEGAKRCRILGSRVLEVSQATLPLRERKRG
>NC_015589.1|WP_013841213.1|1199221_1199812_+|RNA-2',3'-cyclic-phosphodiesterase
MKKLRLFIAIGLPDPLKQKLAEIQRSLPGAHVKWVVPENFHLTLKFLGDTPVSQCPSLVEGMRQAAEGTAAFDLTLKGVGTFPRQGRPKVLWAGIHGPVEKLLGLQGDLEQGLENLGFTREKRPFSPHLTLGRTKEFGSTEALQQQIFQLKQTLFGSWSVASIQLMQSELRPSGPVYTLWDEVFLAKAGLKKGSLT
>NC_015589.1|WP_013841211.1|1198566_1198884_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MDSENKRYTVVVSDEAKQMLVSHVQFLAQVSEHAAMRLIEDFQVRAKSLEQFPERNPWLVDRLIPSGKYRKLLLEKRYLLVYQIKESTVYVDAVVDTRQDYGWLL
>NC_015589.1|WP_013841210.1|1198295_1198583_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MMNIKPSAAIRKNYNEISELCKRSGEPVYLTKNGEGDLVVMDIETFARRESMLRLRENLVAAEEGRLNGKPGYSIDEVSAMMKAAVREVLDGQRK
>NC_015589.1|WP_013841209.1|1195317_1197975_+|pyruvate,-phosphate-dikinase
MSSKKYVYTFSEGRAEMKGLLGGKGANLAEMTNIGLPVPPGFTITTEACKEFYKAGRKFPEGMESEVQEKVDWLEQILDKKFGDPNGPLLVSVRSGAVISMPGMMDTVLNLGLNDQTVIGLAASSGNPRWAYDCYRRFIQMFGNVVLDVEHHRFEGVLEDQKHKRGVQYDNQLTAEDWQEVIDQYKAIVRRETGKEFPQDPVQQLYQAIFAVFNSWENDRAIVYRKIHKISDDLGTAVNVQAMVFGNMGDDCGTGVAFTRNPSTGESILYGEYLTNAQGEDVVAGIRTPQPIAKLAEEMPDVYQQFTRTCTLLENHYKDMQDIEFTIERNKLWMLQTRNGKRTAQAAIRIAVEMVEEGLIDKEKAIGRIDPAQLDQLLHRRIDPGVKLDVIAKGLPASPGSAFGAVVFSADLAEKLGEQGQKVILVGTETTPDDIHGMVAAQGILTSRGGMTSHAAVVARGMGKPCVCGCEAIKIDYENEQFLVGNQGIKAGEVISIDGSTGQVMLGEVSMIEPELSKEFLQLLEWADEIRTLDVRANADTPEDAARAREFGAGGIGLTRTEHMFMAQDRLPIVQEMILAADLEERAEALAKLLPMQEEDFYGILKAMESLPVCIRLLDPPLHEFLPNAEELSVEIARLKLTNGDAGELKAKEELLRKVRSLSEFNPMLGHRGCRLGITWPEVYAMQARAVFQATARLVSEGYRVEPEVEIPLVIEVKELAYLRQLVEQVAEEVKEATGVDFHYTVGTMIEVPRAALLADEIASQAEFFSFGTNDLTQTTLGFSRDDAEGKFMHHYLDKKILAENPFVVLDRKGVGKLMQWTVENVRRVKPNLLIGICGEHGGEPSSIEFCHLIGLDYVSCSPYRVPIARLAAAQAAVNNKGQSK
>NC_015589.1|WP_187290644.1|1194415_1195225_+|kinase/pyrophosphorylase
MVYIVSDSIGETAELVAKAAVSQFNGGNVQIRRVPYVNDPQDIVNIVDEARGENCIIAFTLVLPELREVLVREADKHHIPMVDIMGPFLDALTLITSGPPKLEPGLVRKLDEEYFRRVEAIEFAVKYDDGKDPRGILRADLVVLGVSRTSKTPLSMYLAHKRIKAANVPLVPEVAPPQEIFNLPPHKTIGLTIKPGQLNIIRTERLKTLGLTSHADYASPERILKELEYAESIMKRVGCPIIDVTNKAVEETASKVLEIYYRGERHNHR
>NC_015589.1|WP_013841207.1|1193739_1194375_+|helix-turn-helix-transcriptional-regulator
MELSKRQETIIEIVKKNGPITGEQIAEKLNLTRATLRPDLAILTMAGLLDARPRVGYFYSGKSTDRVLAEKITGIKVGDVKSVPIVVPESCTVYDAVVTMFIEDVGTLYVVREGGLLEGVVSRKDLLKTTLGGHDINKLPVGVIMTRMPNVHFALENDSVWLAAYKLLTHEVDSLPVVKPVPEVNEKQFEVVGRLSKTNVTRIFVELGEGS
>NC_015589.1|WP_041275624.1|1205371_1206442_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MDIKTLTPLWTGGVGGKVDRIHETGLLGSMRWWYEALVRGLGGEVHGGPGLDYCNFKADQYRNFEIENETEYLRAAGLCDVCQIFGATGWKRRFYLSIVEKDIKNEKIQHPIKAIQRKYTNDEGKERIPTWYFPESDLKGAPPNTPKTGTFEMQIQSRDHRFSPDIIGGLIQFIADWGALGARSQMGFGIIEPVNGPFDTRPLYRRLVAASGSRSYAGYPSLKNIFWTCIRTKKTGKEETFNLKYDLRRLFSDDPKVRHFVMGTSLKSGERMASKVKISRPYGDGRIRIWGWIPEKANCYGKAWDRNRIVERIYRYLTEKYNLEFWREMDNSRDSVTPNTGDARRFLQSLLGIKEG
>NC_015589.1|WP_013841219.1|1206443_1207802_+|hypothetical-protein
MPLDYYAFQKTGITENAMGFREPHLAYLYEALDHNENGSVRKKWQKSLKVEMNPWQEKHYDFCKIPDAFSFVPDISAIQQMPWFSFLLQIPFKLRKPYLSKNEEAFYLLENPLRREKIFKTPMEAASGWKGALRAAMLQQLARWWTGLETLEKAERVNRKKFVSRRLQLIRLFGTERGFYEKDNRYLDKLGGKLQTCWFQRCLRFSMTDSGFIAGRLHFFPTFFQEVGLEVINPHDSKTGTGSEKGPILLECVPQKAEGVFTLLYVPVGSFDTNCRKEVARDLEFLADGIKAMLTQYGFGAKTGSGFGIAEERLNGEGRLTLKWDWPNKAIEEEGTTGPAPGLPRYLEAPNRLIEELHCPDNSLKEEAAYRQWLEDRGRTYNKEKKQLYSKAKAWWEREGGLLPEAASRDGEKGRPSQNQLPVATEVTFNTLENLRSQARKIADRLKEGGTV
>NC_015589.1|WP_013841220.1|1207798_1210642_+|CRISPR-associated-protein-Csx11
MNNLIILEENRASLLLAEAVGWLHDYFKCSEEFLQEQFSNSKENNEREKLLKTSLVVEIINKNEKDLGEIQLSFPIGEKLTAPIPKLLHASFYRSALGEKWEKDGLLGYLSRCHRTSHFDKQRRNGGKQSYPGTKISTPFGSEKDVPNCLTERLRALPWNDLLDYNPEKRKKLREKLEALFSEALADTRRPINEVDLWSWGLLVGSLYKAALAGALLTEDVKKQDELTWRLLGVRFKGLDYISEVSRIPDLLARQNLLRHGLDRVRELLEVTYPLGSEVYRDENGSVYVVPDLEDLLQRTDGNGKSLETLIKETFQKDPGEQNVKLQVEGEIQPHIKLEEKSWHGQDPKDWRKYQLPEIGKFLSAVPISQADPNKIRHFWQQHTADVCAVCGLRPQGPGRKSTQRSVCDVCEKRRSDRSKNWAENLQETIWTEEVADVNGRVALVVGQFELTHWLDGVFLSSLFVIEPDPGKQEQQEVSKTPSFSRLRRIWETTRRFWQEVRDEVLETSCTKQPRLKIYLSAEPKLGDYHVYDLVLGSVDLDVVWIPSDKGTGCLLSAANLEYIARRLGAKETENHLPEKAADYIKKCLEQLYAGQPVLRNPEGRTDRKSPNLLEGITITRIDYEETPYAPVIPLLAEPRAFMMLVPACSSLRIIEKIKEKYEREMGKVKDRLPLSLGLVHAGRRIPVRSLLEAGRALLDKSVSFEIWRVGKDQNGKSEIGASMEGRSLLILEQDRPPFRRHFPFNMKDKNPKDPWYPYLFLAQKRTGKNGEAVKRREAEATLPLGKNQTRPNRVVHAANVEEGDQIYFYPSTFDFEFLDTNGRRFEIYYDQEGRRPRRTRPFYLEGLDCFKTIWNCLQHLSKTQRHQLIRTIECVREDWYGQDAGGVSYVDEVFSRFVADTLAGAAWPRGKKWEEIPERIQRKLVKAGVWGELADLAELHMEILKQ
>NC_015589.1|WP_013841221.1|1210656_1211691_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MATYRRQRYLFMSTDPVHVGTGGYRLGRVDNSIVREPGTRVPKIPGTSLHGAARSNAARLYENPAAAGRDHGKVDKPQGDPICYTFGYIQQADGSREEVRAYSGVVNIFDALVLAFPVYSMAGPVWISTYERLKEAGFRISNPEQGNKPEEWTPPENWEAGKVFLTWQRSDILNLGWLMMEVGGGVSVQAPSNWNNETRWKAIADHLVLVKESIFSQIVNSNLEVRTSVAIDPERGAAEEGALFTYEALPRATFLTAEVVLDDDRMDWPLKTEERQRKTFKDKALPGGCWNGPLAVVQSGLRLIEWLGVGGMGTRGFGRMAMIGDPVEETYGGRDGDAQPGDNS
>NC_015589.1|WP_013841222.1|1211665_1212067_+|hypothetical-protein
MHSPATILNLDRLAAKHGQAVIGRLVDEKKIKAGDVDNSVTKALGVLQENGVYACFLYLLAKEKNNGGIVVQEMLNLLENLGYGWGKPVDQKPDTVLAYLTDKVTKQLEPLLLAKETLEKMLIYARYGAKAKE
>NC_015589.1|WP_013841223.1|1212072_1212942_+|hypothetical-protein
MAWQMYKVILRLCSPLHIGCGKIGNLQRTYPYVTGRVMWGALTMRLTRDKCKGNEINDSSIYQEVGEQVHRELAFTYFYPVLSSGNHYQIEWPWKDQRAFRYRFLSSYAGTALDYPQQSAARGMLRETEFISPYTLDEGKRVFLQGYIFEKKGCTLSWQEAVKRLQFGGERSYGWGKVKPVAINPCREDDKLFDKGIKFLKSDERPRVCLPAKARLLAHTVAAENPFADGPIEPLAGREWRPNQKGNAYVGQHIAFNEICFAPGSVLVNNDNHYDFRIDPFGVWRLSEK
>NC_015589.1|WP_013841224.1|1213089_1213365_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MLVEIQQKSQVTIPKELLKKLKLKPGDKLQVEEKDGRLIITPVAIIPRDQMWFYSKEWQTEEMKVEQQVREGRVKTAKSKEELLKGLGLNE
>NC_015589.1|WP_081462059.1|1213364_1213628_+|hypothetical-protein
MNLYYSEFFADKVKRLSLEERRVLKKKLEFLMENPRHPSLRTKKIQGQDRIFEASITMEIRMTWEYMEDGGILLRNIGEHDKTLKSP
>NC_015589.1|WP_013841226.1|1213974_1215864_+|methyl-accepting-chemotaxis-protein
MFQSIRTKMLVPLVILVCVSLVALVLSGYRQMRTAILEQEQVQYRNIESLIRNDLEAVFTSTRMGLASVTAMPGIQEAFAKREREKLLTLTSGVFEQAKKDGIEQFQFHLPPAVSFLRLHQQDKYGDDLSSFRNTVVQCNQSQKVVAGLEEGRGGYGFRVVAPVFYQGQHVGSVEYGMGFNAELLARWKKQLGGDFFMYPYASSGVAWAKVDQSKPLAGTAARDGLTVSPQIIKEAMAGKNYHAVYMADASAVAVIIPVFDYSGKPISYVKANLDRTQVLGQLQGVLRDSLLLLILSILVMAAVMYFVTGKALKPLVWISEEVSLIARGDLTRNFNFKGKDEIAALGQALNTMLSNFRQLIGETRSVSDQLEESSKSLTQSSEETSSAVQEVTTQVTQLAGSLEELGTIARDAAGYSGQASQAAQEGQQAVGQTTEQMNLLHTMMEGLALETGGLGQRIGDIEKFVQLIGEIAEQTNLLALNAAIESARAGEQGRGFAVVAQEIRQLADRSNLAAEDVKAIILEIGKQSEGVIRKMNEGLKEVRSGHRLIDQTGEKFSRIKETVDLLVEQSAAVAEASAQATASGSEIAAATEQQLASIQQVTVAAGLLEQLACNLHQHIGKFKNDSSC
>NC_015589.1|WP_041275625.1|1216028_1216721_+|SAM-dependent-methyltransferase
MIKLSNRLKLLASYVPQESIVADIGTDHGYLPVYLVLKGICPRAVAADINQGPLEAARSNILEHKASGLIELRLGNGLEVLQPGEVETIIIAGMGGGTIRDILTASPEVAGTVKRLILQPMADEMELRQYLLKSGWTLREEDLLLEDGRLYVVMVAERGHERVENPVLLELGPRLVEKKHPLLGLFIAKRKEKYHKILAGLAQSTLPEAREKAVGIRKKLQEIEGVEACL

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Crispr_ID: NC_015589_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_4

1421835-1423727

TypeI

I-C

Consensus_repeat	Method
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	PILER-CR
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CRT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	PILER-CR

28 spacers

cas3,cas5,cas8c,cas7,cas4,cas1,cas2

The CRISPR arrays of NC_015589_4

>merge|NC_015589|4|1421835-1423727|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCCATAAACTGTACGGCTGACGGATAATCCTAAGCCAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATAATCAATCAAAGCGAGTTTCTGAGGAGAAAAATAAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATCTACTCCCTTGGCAGCTAATTCGGCAATGTTCTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATGGTTCCCATCCCAGGGCCGTGTATACGTCCCTAAAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCAAAAATCTACTGGCTGCCTCAACCGCCAAAGCTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATTTTATGAGGCCGTGATTGAGCCTATTGCTATCCAAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATGCAGGATGACCAGTGCAGCGAAAAGGCCATGCTTGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATACTGAGTGAAAAAGTCGATAAAATTTCCCTTTCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATTTACAACCAAGTACTTAATGCCTATCTGGTTAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATAATAGGTATATTTTACCCTAATTAATCTGGAAAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATTCTTCAGGTAATCATCCATTTTCCGTTTCAACGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCTGAAGCCATTTGGATATACTGCAAAAGGATACCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCTCCTCGTACCAGCGCGTCCAAAGCGAACTTTGGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCTTAAGGCTGAGGCGGGTCATTGACTGGCCTCCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTCCCTGGCTGCATCCACCAAACCGGCCGCAGCATCCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATCAAATTATCACCAATAGAGGTTCTGGCTATAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTCCGGTTGGAAACAGAAGCCACTAGGCAGACGACGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATACTGGCCATTGCCGCAAGCTCCGGCTCAGTTAGCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATCCGGACGCGGATTGCTTCAATTGCCACAATAAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATAATTACCCTCACCCCCTTGCTCAAGTTTCTTTTGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTACAGCCCCATTATGCCACCGCTAATCGGTGCACGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATGTCAGTTTCATTATTATTTGACTCGTTAGTATCTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATAGCTCTCAACTGTTGTTTTGTCAAGTGCAACTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATCTAAGGCATAAAGCCTTCGCCGGGTTATATCAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCCATCCATAATGGGTTACACCATAATAAGCGTCAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTCCAGTGCCTTAAATTTATTGGAAAAAGTTTTAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTGAAAAACAGGTCAAAACCCTTGAAAAACTTGGAATGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTGAAAAACAGGTCAAAACCCTTGAAAAACTTGGAATGTCGCTCTCTAGGTGAGAGCGTGTGACCTGCTC

>NC_015589|4|3|1421835-1422798|PILER-CR
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATAAACTGTACGGCTGACGGATAATCCTAAGCCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AATCAATCAAAGCGAGTTTCTGAGGAGAAAAATAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCTACTCCCTTGGCAGCTAATTCGGCAATGTTCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GGTTCCCATCCCAGGGCCGTGTATACGTCCCTAAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CAAAAATCTACTGGCTGCCTCAACCGCCAAAGCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTTTATGAGGCCGTGATTGAGCCTATTGCTATCCAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GCAGGATGACCAGTGCAGCGAAAAGGCCATGCTTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACTGAGTGAAAAAGTCGATAAAATTTCCCTTTC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTTACAACCAAGTACTTAATGCCTATCTGGTTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATAATAGGTATATTTTACCCTAATTAATCTGGAAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTCTTCAGGTAATCATCCATTTTCCGTTTCAAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTGAAGCCATTTGGATATACTGCAAAAGGATACC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTCCTCGTACCAGCGCGTCCAAAGCGAACTTTGG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTTAAGGCTGAGGCGGGTCATTGACTGGCCTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTCCCTGGCTGCATCCACCAAACCGGCCGCAGCATCCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATCAAATTATCACCAATAGAGGTTCTGGCTATAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCGGTTGGAAACAGAAGCCACTAGGCAGACGAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACTGGCCATTGCCGCAAGCTCCGGCTCAGTTAGC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCCGGACGCGGATTGCTTCAATTGCCACAATAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AATTACCCTCACCCCCTTGCTCAAGTTTCTTTTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TACAGCCCCATTATGCCACCGCTAATCGGTGCAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GTCAGTTTCATTATTATTTGACTCGTTAGTATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATAGCTCTCAACTGTTGTTTTGTCAAGTGCAACT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCTAAGGCATAAAGCCTTCGCCGGGTTATATCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATCCATAATGGGTTACACCATAATAAGCGTCA


>NC_015589|4|4|1421835-1423727|CRISPRCasFinder
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATAAACTGTACGGCTGACGGATAATCCTAAGCCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AATCAATCAAAGCGAGTTTCTGAGGAGAAAAATAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCTACTCCCTTGGCAGCTAATTCGGCAATGTTCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GGTTCCCATCCCAGGGCCGTGTATACGTCCCTAAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CAAAAATCTACTGGCTGCCTCAACCGCCAAAGCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTTTATGAGGCCGTGATTGAGCCTATTGCTATCCAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GCAGGATGACCAGTGCAGCGAAAAGGCCATGCTTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACTGAGTGAAAAAGTCGATAAAATTTCCCTTTC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTTACAACCAAGTACTTAATGCCTATCTGGTTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATAATAGGTATATTTTACCCTAATTAATCTGGAAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTCTTCAGGTAATCATCCATTTTCCGTTTCAAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTGAAGCCATTTGGATATACTGCAAAAGGATACC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTCCTCGTACCAGCGCGTCCAAAGCGAACTTTGG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTTAAGGCTGAGGCGGGTCATTGACTGGCCTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCCTGGCTGCATCCACCAAACCGGCCGCAGCATCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCAAATTATCACCAATAGAGGTTCTGGCTATA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCGGTTGGAAACAGAAGCCACTAGGCAGACGAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACTGGCCATTGCCGCAAGCTCCGGCTCAGTTAGC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCCGGACGCGGATTGCTTCAATTGCCACAATAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AATTACCCTCACCCCCTTGCTCAAGTTTCTTTTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TACAGCCCCATTATGCCACCGCTAATCGGTGCAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GTCAGTTTCATTATTATTTGACTCGTTAGTATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATAGCTCTCAACTGTTGTTTTGTCAAGTGCAACT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCTAAGGCATAAAGCCTTCGCCGGGTTATATCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATCCATAATGGGTTACACCATAATAAGCGTCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCAGTGCCTTAAATTTATTGGAAAAAGTTTTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGAAAAACAGGTCAAAACCCTTGAAAAACTTGGAAT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGAAAAACAGGTCAAAACCCTTGAAAAACTTGGAAT
GTCGCTCTCTAGGTGAGAGCGTGTGACCTGCTC

>NC_015589|4|3|1421835-1423726|CRT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATAAACTGTACGGCTGACGGATAATCCTAAGCCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AATCAATCAAAGCGAGTTTCTGAGGAGAAAAATAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCTACTCCCTTGGCAGCTAATTCGGCAATGTTCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GGTTCCCATCCCAGGGCCGTGTATACGTCCCTAAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CAAAAATCTACTGGCTGCCTCAACCGCCAAAGCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTTTATGAGGCCGTGATTGAGCCTATTGCTATCCAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GCAGGATGACCAGTGCAGCGAAAAGGCCATGCTTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACTGAGTGAAAAAGTCGATAAAATTTCCCTTTC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTTACAACCAAGTACTTAATGCCTATCTGGTTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATAATAGGTATATTTTACCCTAATTAATCTGGAAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTCTTCAGGTAATCATCCATTTTCCGTTTCAAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTGAAGCCATTTGGATATACTGCAAAAGGATACC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTCCTCGTACCAGCGCGTCCAAAGCGAACTTTGG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTTAAGGCTGAGGCGGGTCATTGACTGGCCTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCCTGGCTGCATCCACCAAACCGGCCGCAGCATCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCAAATTATCACCAATAGAGGTTCTGGCTATA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCGGTTGGAAACAGAAGCCACTAGGCAGACGAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACTGGCCATTGCCGCAAGCTCCGGCTCAGTTAGC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCCGGACGCGGATTGCTTCAATTGCCACAATAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AATTACCCTCACCCCCTTGCTCAAGTTTCTTTTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TACAGCCCCATTATGCCACCGCTAATCGGTGCAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GTCAGTTTCATTATTATTTGACTCGTTAGTATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATAGCTCTCAACTGTTGTTTTGTCAAGTGCAACT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCTAAGGCATAAAGCCTTCGCCGGGTTATATCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATCCATAATGGGTTACACCATAATAAGCGTCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCAGTGCCTTAAATTTATTGGAAAAAGTTTTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGAAAAACAGGTCAAAACCCTTGAAAAACTTGGAAT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGAAAAACAGGTCAAAACCCTTGAAAAACTTGGAAT
GTCGCTCTCTAGGTGAGAGCGTGTGACCTGCT

>NC_015589|4|4|1422900-1423525|PILER-CR
	CCATAAACTGTACGGCTGACGGATAATCCTAAGCCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AATCAATCAAAGCGAGTTTCTGAGGAGAAAAATAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCTACTCCCTTGGCAGCTAATTCGGCAATGTTCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GGTTCCCATCCCAGGGCCGTGTATACGTCCCTAAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CAAAAATCTACTGGCTGCCTCAACCGCCAAAGCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTTTATGAGGCCGTGATTGAGCCTATTGCTATCCAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GCAGGATGACCAGTGCAGCGAAAAGGCCATGCTTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACTGAGTGAAAAAGTCGATAAAATTTCCCTTTC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTTACAACCAAGTACTTAATGCCTATCTGGTTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATAATAGGTATATTTTACCCTAATTAATCTGGAAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATTCTTCAGGTAATCATCCATTTTCCGTTTCAAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTGAAGCCATTTGGATATACTGCAAAAGGATACC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTCCTCGTACCAGCGCGTCCAAAGCGAACTTTGG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTTAAGGCTGAGGCGGGTCATTGACTGGCCTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTCCCTGGCTGCATCCACCAAACCGGCCGCAGCATCCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATCAAATTATCACCAATAGAGGTTCTGGCTATAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCGGTTGGAAACAGAAGCCACTAGGCAGACGAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACTGGCCATTGCCGCAAGCTCCGGCTCAGTTAGC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCCGGACGCGGATTGCTTCAATTGCCACAATAA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AATTACCCTCACCCCCTTGCTCAAGTTTCTTTTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TACAGCCCCATTATGCCACCGCTAATCGGTGCAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GTCAGTTTCATTATTATTTGACTCGTTAGTATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATAGCTCTCAACTGTTGTTTTGTCAAGTGCAACT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATCTAAGGCATAAAGCCTTCGCCGGGTTATATCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATCCATAATGGGTTACACCATAATAAGCGTCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013841443.1\|1419024_1419894_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_015589.1\|WP_013841436.1\|1410514_1410952_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|237733
NC_015589.1\|WP_013841451.1\|1434054_1435086_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_015589.1\|WP_143758753.1\|1423793_1424899_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NC_015589.1\|WP_041275338.1\|1435096_1435387_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015589.1\|WP_013841441.1\|1415606_1417121_+\|catalase	unknown	unknown	gnl\|CDD\|163712
NC_015589.1\|WP_013841449.1\|1432512_1433367_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NC_015589.1\|WP_013841446.1\|1427180_1429622_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015589.1\|WP_013841453.1\|1439793_1440141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368116
NC_015589.1\|WP_187290619.1\|1410926_1412219_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|238386
NC_015589.1\|WP_013841447.1\|1429640_1430384_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NC_015589.1\|WP_143758863.1\|1417433_1418759_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_015589.1\|WP_041275335.1\|1413776_1414667_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_015589.1\|WP_143758753.1\|1440493_1441599_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NC_015589.1\|WP_041275334.1\|1412265_1412454_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841440.1\|1414825_1415377_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237081
NC_015589.1\|WP_013841450.1\|1433386_1434058_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015589.1\|WP_013841448.1\|1430380_1432510_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_015589.1\|WP_013841444.1\|1420812_1420968_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841438.1\|1412596_1413784_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013841443.1\|1419024_1419894_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.4331e-34
NC_015589.1\|WP_013841436.1\|1410514_1410952_+\|MOSC-domain-containing-protein	gnl\|CDD\|237733	PRK14499, PRK14499, cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein.	8.1651e-62
NC_015589.1\|WP_013841451.1\|1434054_1435086_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_015589.1\|WP_143758753.1\|1423793_1424899_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.47584e-30
NC_015589.1\|WP_041275338.1\|1435096_1435387_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.99412e-33
NC_015589.1\|WP_013841441.1\|1415606_1417121_+\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NC_015589.1\|WP_013841449.1\|1432512_1433367_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	1.13255e-112
NC_015589.1\|WP_013841446.1\|1427180_1429622_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.56071e-55
NC_015589.1\|WP_013841453.1\|1439793_1440141_+\|hypothetical-protein	gnl\|CDD\|368116	pfam04783, DUF630, Protein of unknown function (DUF630). This region is sometimes found at the N-terminus of putative plant bZIP proteins. Its function is not known. Structural modelling suggests this domain may bind nucleic acids.	0.00893043
NC_015589.1\|WP_187290619.1\|1410926_1412219_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	4.75524e-118
NC_015589.1\|WP_013841447.1\|1429640_1430384_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.7038e-84
NC_015589.1\|WP_143758863.1\|1417433_1418759_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	7.2511e-160
NC_015589.1\|WP_041275335.1\|1413776_1414667_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	4.34074e-21
NC_015589.1\|WP_143758753.1\|1440493_1441599_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.47584e-30
NC_015589.1\|WP_013841440.1\|1414825_1415377_-\|hypothetical-protein	gnl\|CDD\|237081	PRK12372, PRK12372, ribonuclease III; Reviewed.	0.000729864
NC_015589.1\|WP_013841450.1\|1433386_1434058_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.01498e-29
NC_015589.1\|WP_013841448.1\|1430380_1432510_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	5.51603e-139
NC_015589.1\|WP_013841438.1\|1412596_1413784_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.18288e-82

>NC_015589.1|WP_013841444.1|1420812_1420968_-|hypothetical-protein
MKKYFSQKLIIILKEIKYNKKSEIKNLKVENAKLMRLIVDQALDIQALRRY
>NC_015589.1|WP_013841443.1|1419024_1419894_+|alpha/beta-hydrolase
MEERTFNTKQVNLNYVEKGVSDISILLLHGGSSRWQTFRDIIDDLSVHFHVYAIDLRGHGKSGRTENKYKMQDYVPDVREFIEKCIKKPTIIIGHSLGGMIAILIAAYYPSIVKALIIGDSPVSLDVLRSHSESQKDMTMLWREWSKNLSLDEIVEKLKAMQVPVPEREGTVSAAEAYGENHPWFEFMAENLKQNDPNMLSAIIDDFDNTYEEYDVERLFPLIKCPILIVKGDSGQGSLIRDTDIGFIKKLNNDVKHVEIKGVGHALYMQDKQSFIDAILPFINKNAQN
>NC_015589.1|WP_143758863.1|1417433_1418759_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MGHTGEGIGRAEGVAVFVPGALPGETVKVRIDQVKKNYARGELLEIIQKASARISSRCPFTKACGGCHLQHLDYQEQLRHKREMVLSALKRIGGLENIEVLTTLGMDDPWHYRNKVHLQVKKDGNRIQLGFFADGTHQMVAEVAKHKCLLVHEKMNQIMATLQELINTDSLSVYCWKRKEGLLRHVMIRRGYRSGQVMVVFVTSPEEWPGAKKLAKDLIARHPEVTSVIRNINHQPGRAVLGRENHLLAGEESIMDWIEDLKFKISASSFYQVNSIQTEALYGKVLEYAGLQGDETVVDAYCGIGTIALFLARHAGEMIGLEIVEQAVEDARQNALLNNLTNTRFYSGPVEKLLPQMASKGQKADVVILDPPRKGCAREVLNAVTAMQVPRIVYVSCDPATLARDLGILSKMGYQAAKVQPVDMFPWTSHCEAVGLVVREQ
>NC_015589.1|WP_013841441.1|1415606_1417121_+|catalase
MSDLKKKILTTNLGNPVYEDQASITAGESGPTLLQDTHLIEKLAHFDRERIPERVVHAKGTGAHGYFEVTHDVSRFTRAAFLSEIGKRTDLFVRFSTVGGEKGSADSARDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDAIKFPDFIHTQKRHPARHTQNPDMMWDFLSLTPESIHQVTILFSDRGTPKSFRHMDGHSSHTYMWYNQAGEYYWIKWHFKADLGFQTLTREEATELAGKNPDSATKDLYDSIAQGDYPSWTVYVQIMPPEEAKNYKFDPFDITKVWYHADYPLIPVGKMVLNRNPENFFAEVEQAAFSPGNFVPGIAASPDRMLQGRLFSYPDTQRHRLGPNFHQIPINAPKAAKANSYQRDGFMAIDGNGGASPNYYPNSFGGPAPDPQFAPPPVDVAGMVSRHPYVLSDIDFVQAGELYRRVMSDQDRANLVSNICDSLGQAQQRIQLRQTALFYKADPDYGQKVAEGLGLDLAAVKDLAAMSQEERVKATQA
>NC_015589.1|WP_013841440.1|1414825_1415377_-|hypothetical-protein
MTQYKINRKKRRINLPSRCNCYQNDYVDLVVEGAGIRLGRLSSLDIPAEVSAYIPRVEVRRRHYQNGELVCEDEKIYNSITVVHAPRHPSENPSGSSLPVFTPATGEKSKEQPAIAPSDQSLFPPQLPTAPNPEQPDAPEPPDIPSQPEPHPPPVAPFSAKPLRKNFPGHPSPSITINKKPLF
>NC_015589.1|WP_041275335.1|1413776_1414667_-|EamA-family-transporter
MSQKNQPWAGIFLVVIATIALSTEAIAAKIAYQGGATVLTTLTVRYVLAVLFFAMMLHSAGTSIKLSLKHTLQAIGLGIGCQAVTALSLFNAYRYIPAAMAILLLYVYPTITAILAYFILKEPLHWQKWLALVLTSTGCVIILGHPQENLHPLGVALALLAALINALFLVLSGKVLKEIPVPVFNTYLTGSCALLFLGLGSLLGQLNFNLPLRAWLALLFLSIVCTVVAMSALLKGVTLIGPSRSAIISTLEPAFTAVLGFFLLSESLSLWQMIGGAVILSGVLLQKKEPEVQNNG
>NC_015589.1|WP_013841438.1|1412596_1413784_-|MFS-transporter
MDSRRWILAAVAVATFLDTLIFGIIIPILPVYSENLGATPFTLGVIFAAYSASLLAGTIPLGLLSDRYGRKKIMLLGLLTLSLSTLGFTLANSLWLLILIRLIQGFSAGATWTAGPALVADLYPPDQRGAKMGIISAATGFGFLIGPAAGGLLYELGGYRLPFLIGTILSLIVGLFVLKVLPADKTNGKSRKRDHSLLEVLQFKGVPVSLTVILLGSTGFGFIDPILPGYFMDKFGISPGIVGILFGLISLSHVSSAPVIGKLSDSWGRLKLIQWGLVGTAAVIPLVSLSNSLITTAMVMGLLGITFGLILTPTMPLLADSVMLQSKDSGEASYGAAFGLYNTAFSLGYLWGPLFGGGWMEFLPLWGLFALYSLLLLTLFLFTLPRNKKEIRGLQ
>NC_015589.1|WP_041275334.1|1412265_1412454_-|hypothetical-protein
MAKQTKKITSFLLNELIVFEKIHAAQIKAKNLKQSKEPYISYDYFGQAIYWVEPARLPSTIR
>NC_015589.1|WP_187290619.1|1410926_1412219_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MPLKYWNNRISPIVVSLVGCSNSGKTTLLEKLIQSLKDKGYRVGTVKHHRGAFELDIPGKDTWRHAQAGADVVALATPGGLGIIRKLQQEPSLKDITDYMSGVDIVLVEGIKKGSQPKIEVVRSDISSAPVCSLEDLTAVVTDLPLTLDIPVFDLNKIEQVADFIEDRFLKQEMIPKPVERLTAEQLKRYHRNIKLPGVGQEGQIKLLNSSVLVVGAGGLGSPVSLYLAAAGIGRLGLADEDSVDLSNLQRQIVHATGDIGRSKVESARDKLTAINPDVQIEIYHQRITADNVDQILNSYDLVVDATDNLESRYLLNKACIEAKKPFIYGGVLSMVGQVMTILPGQGPCFRCIFREGPSEKAVKSTADVGILGAVAGTIGCLQSMEAIKCLLNRGNLLVGRILTMDGLSMSFQEVEICRDPECPDCGHLK
>NC_015589.1|WP_013841436.1|1410514_1410952_+|MOSC-domain-containing-protein
MGRIVAVCTSPRKGMRKKNVGEGLLVVEHGLEGDAHVGDWHRQVSLLAMESIEKMKAMGLKVGPGDFAENLTTEEIDLVSLPVGTKLRIGEKGLGEVTQIGKECHTRCAIYHQAGDCVMPKEGIFVRVLQGGPVKVGDAIEILEQ
>NC_015589.1|WP_143758753.1|1423793_1424899_+|IS3-family-transposase
MRKRFTEEQIIGILNSHENGMPVADILRQHGISEQTFYRWKSKYGGMEASDAKKLKQLEEENRRLKLLVGELTLDNQALKWVIGKKQVKPARKRKLVKELQDTFGMSERRACRLVGIGRSSHRYVPSTSEENEALKTRISELAFKWRRFGYRRIHALLQREGQKVNHKKVYRLYRLAGLAVRRRKRKRVLSGRGRPPTVTPQPNVRWSMDFVSDSTATGQRFRVFVVIDEATRECLASEVDTSITGRRVTRVLDRIAIYRGYPKEILSDNGPEFAGLTLNQWAYEHRVIQLFIDPGKPMQNSHVESFNGKLRDECLNEHWFRGVSEARRIIEEWRHEYNTVRPHSGLSNKTPVEYATDLAKKTCEQIS
>NC_015589.1|WP_013841446.1|1427180_1429622_+|CRISPR-associated-helicase/endonuclease-Cas3
MDSERFIAHIRKADKSEQYVDEHNDQVAELASAIAESYGLAKIAKLAGRHHDDGKNTPEFTAYIRAAVEGKRVVRGSVIHSTHGAILVNELASLKRNSRLTAEIVRTAIMSHHGLRDCLSLDGDVVFVEAAENIADSYESVKETVYQRYGRDFINQEFIDAGLDTHVITKNIQELQKKSKLLGSPYFYLAMFTRLITSIVIDADRTDTACFEDKRALPQRRALDERKEMWKKYLVHYESQLEKLQEGKKTSSLDPYRGEISRACAEFDGGEAGIFRLVVPCGAGKTLAALRYALHTARRYGKERIFYIAPFNSILEQNATEIAKFIGDPDAVLEHHSNIIFSAEENKDKSEDEKRYQLLTENWAQSPVVATTAVQFLNTLFAGQTSCIRRMQALGNSVIILDEIQALPIKVLKLFNGAMNFLASFCKSSVVLCSATQPLLDRVDHYRILPPRSIIENEEKYNEAFRRVQIVNCMKEQGYSREEAADFIVSQLESTRSVLAIVNTKRSAREIFKHIQDKLGNETPYRIFHLSTNMCPAHRSRVLKHLRERLKDTDLGEKIICISTSLIEAGVDVSFERVVRSLTGLDSIVQAAGRCNRNYETSCGIVSIINLRDERTSGQGYLKEAQKATQELLYSIKISPEGYPEGALSKDAMEEYYARYFQPLLEEMAYRLKFDPEHTLLDLLTSNPSGQRGFEEKYPQERPPELKQAFKEAGGAFSVIDDDGKVDVFIEYDEEARKRLQKLREATTLQEKRTALRQLQPYTVQLRDNDWIKTQRTALAPEDGGILVLPPGYYDGEYGVDETLNIEMETLII
>NC_015589.1|WP_013841447.1|1429640_1430384_+|type-I-C-CRISPR-associated-protein-Cas5
MEIKRNTVEFLVRGDRALFSDPVTRVGGEKTSYYVPTYEALKGILASVYWKPTLVWIIDAVRVMNMIQTASEGIRTKNYNGGNDLSIYTYLKDVRYQVRAHFVWNENRPELAADRNEHKHHNIARRMIERGGRRDIFLGARECQGTVEPCVFGECPGTYDQVEELQLGYMFHGFTYADEAVRDGEKGHMSVRFHHVLMKRGVIEFPGPEEISDKDRRILHKMSVKPFGETIGNFSGLAEFAAEEVTE
>NC_015589.1|WP_013841448.1|1430380_1432510_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MNWVSSLCALYDANAERAGQAERWKKKNLVLFPVGYDTMEAQIEIHIDQEGNYLGAHLLEKDEAETLVPYPEGRTSGLKALPLFDSLSYVAGDLLEVLTFYFPDAKNEKEKQSKIARLKGAFPLYLAGLKTWCDSPFSHPKVQAIYRYVTKQTVAQDLIRSQVLPMDENGIVSDKVKVQNTSLDKAFVRFRVFMHDKRLPEDILDNRDNAHDSAVWLDRSVQRSFINYYLSTFQAKDLCYMTGEYTPIAKTNPLKIRGKWDTKAKLISANDDTNFTYRGRFHTKEKETGYNEALSIGYVASQKAHNALKWIIRRQGFSRDGVCIVAWENALRDLPDFYASAADILSQVPENAADGVEVELEEEVLFEEDEAEIPETNYVSAKKFNAALDGYKAKLSGISRMVVLALDSATPGRLAITYYKELASSRYLQNIRQWHDSCCWKHEYIQDKQRKVYEGMASIREIALAIYGTEQGEDNNPQLKLSKNSDNKSPMLVAAFERLRPCIIDGAAIPRDMVRAAVLKASNPLAYKAKFNYHKVLHIACSMVKRLYWEKQQRNEREGVILGMELDKTNRDRSYLYGRMLAVAERVERSTYEKGETRITNAERYMQAFSRSPFRTWKIIWNNLQPYMKQLKPSAREYYKNLLGEITELFAYEDRISNELLDGKYLIGYDCQRMDLRRWPKEQISSHEGTNVSQKRTNECHQDDQEGEE
>NC_015589.1|WP_013841449.1|1432512_1433367_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTLQNKIDFAAIVSVTRANINGDPLNGNRPREDYEGHGIFSDVAIKRKLRNRLQDLGECIFVQSDDRSNDGYKSLKDRADGYGEFKTEMSKGKKADRDKCMQIACRKWFDVRAFGQVFAFKGDEVSVGVRGPVSVQQAVSVSPIDIVDMQITKSVNSEAGKSGKSSDTMGMKHYVNFGLYVIRGSINCQLAEKTGFTAGDAQKLKEALCTLFENDASSARPEGSCEVCRVYWWEHADKTPKETSAVIQRALRISSKKDIPQSFDDYEIKLDQTECVPEIINLV
>NC_015589.1|WP_013841450.1|1433386_1434058_+|CRISPR-associated-protein-Cas4
MEYQEEDFLLLSGIQHYVFCKRQWALIHIEQQWQENLRTIEGGILHEKTHDSTIKEKRGALIISRGMGVFSRTLGITGACDVVEFHKSRDGVTLYGREGTYQPVPVEYKRGKPKQGNADVLQLCAQAMCLEEMLLCTIPEGFLYYGEPKRRMKVTLDEEIREEVKRICQEMHGLYDKRYTPKVRTTKACKACSLSELCLPKLCKNPSALGYMKKNISEIEADQ
>NC_015589.1|WP_013841451.1|1434054_1435086_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYITSPNTYLSLDGENIVVLKDDVEALRVPLHNLEGIIAFGYTGASPALMGACAKRNIALSFMKSSGKFLGRVVGEVRGNVTLRKAQYRLSDDTEESHKIAKSFILGKIYNARWIVERATRDHAARLDTDKLKGVCQTLANALKLVENSKDLGQLRGVEGEAAAQYFRVLDDLILQQKEDFYFNSRNKRPPLDNVNAMLSFVYTLLAHDAAAALETVGLDPYVGFLHRDRPGRISLALDLMEELRAVYADRFVISLINRREVNPGGFTRMENGAVIMDDDTRRDILKAWQSRKQEEIRHPFLQEKMEWGLVPYAQAMLLARFIRGDLDGYPAFMWK
>NC_015589.1|WP_041275338.1|1435096_1435387_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTQTAAGRKRLRQVAKQCVNYGQRVQNSVFECVLDAAKFREVQHKLEQIIDRETDSLRFYMLGNNYKNKVEHIGAKTSFNVEDTLII
>NC_015589.1|WP_013841453.1|1439793_1440141_+|hypothetical-protein
MVDIDFILNILHPNRSEAYRRYFDLCKEIQVPQLPPEVSLPDEVHVGREGKQRESSTTNKLTWEEIIIKITRNNVEKEKLLSRCRERRIVAARNRLIYEAINQEVLSRRELAKIL
>NC_015589.1|WP_143758753.1|1440493_1441599_+|IS3-family-transposase
MRKRFTEEQIIGILNSHENGMPVADILRQHGISEQTFYRWKSKYGGMEASDAKKLKQLEEENRRLKLLVGELTLDNQALKWVIGKKQVKPARKRKLVKELQDTFGMSERRACRLVGIGRSSHRYVPSTSEENEALKTRISELAFKWRRFGYRRIHALLQREGQKVNHKKVYRLYRLAGLAVRRRKRKRVLSGRGRPPTVTPQPNVRWSMDFVSDSTATGQRFRVFVVIDEATRECLASEVDTSITGRRVTRVLDRIAIYRGYPKEILSDNGPEFAGLTLNQWAYEHRVIQLFIDPGKPMQNSHVESFNGKLRDECLNEHWFRGVSEARRIIEEWRHEYNTVRPHSGLSNKTPVEYATDLAKKTCEQIS

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Crispr_ID: NC_015589_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_5

1424919-1427147

TypeI

I-C

Consensus_repeat	Method
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CRT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	PILER-CR

33 spacers

cas3,cas5,cas8c,cas7,cas4,cas1,cas2

The CRISPR arrays of NC_015589_5

>merge|NC_015589|5|1424919-1427147|CRT,CRISPRCasFinder,PILER-CR
AAAACCTGGGGGCAGGTCACGTGGATTGAAATTTCTCGTAACATGCGTAATCTTTGTCCAAATTTTTGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCCATGCCAATTGCATGGCCCTGGACTGTGTTTTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCCATTGGTCTGCGCCGGAGGATCGCAATTACGTGGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTGTTATGGAAATGACGGATCCAGATGGAAGGACACGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATACGACGAGCTGGATCGCAGCGACCTGGCGTGCGTAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCGTTGCGTGAAGTCTTTCATGGAGATCTCTGAGGAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATAGACATGATATTTCCTCCTTTAAATTTTTTATCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTTTTTTGATTTGAATATGGGGTATCACCCCAACCCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTTGGACCTGTTTTTCTAGCTCTACTCTCTTTTGCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTCCCTATGTTGAATATGAAACGAAGTCTCTTTCCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCCTCTTTGTTATACTTGTATAAAAGGGGGGATTAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTCCCTATGTTGAATATGAAACGAAGTCTCTTTCCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCCTCTTTGTTATACTTGTATAAAAGGGGGGATTAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTCCCTATGTTGAATATGAAACGAAGTCTCTTTCCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCTGGTACTAATCCCGGTGAAGGTTCTGGCTCTCTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTGGAAGGTAAATATTGGGACGCCACCTTAGACGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCTACCTGGCAGGGCGGCGGCACCGTAAAATGCACGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTGGTTCAGGTTTGCAAAAAAAGCCTCCAGATGCGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATGCTGCTGCGGGTCATTTTGTGCCTGCATGGCATCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATAAATTTTCACCCCCTTTGTTTCGTGAGGAAATATCTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTTAGAACGGGGAGGAGATATTGATACCATTTTAGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCGAAACAAAAATATGCTGCTGCCGGTATGGCTGCGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTTTTACTGGTACTCCTGTTCAGTCTGTTCCTTATGTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTGTCTTTGCGGCTTCCAGTTGGTTAACTCGCTCAGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCAGCGTAGCATCCAGTATTCAAGAGAAAGTATCTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATACCTAACATATATCGTTACATCTATCCTCATGTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCATTTTTGCGTTTACGTATTTCGAGATCGTACCAGGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTTATTTGCTTATTTTATCAACCTTTATGATTATATTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATTGCCATGGACGCAGAACGGTATAACCAGAAAGATACGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCTGCAACAACACCGCTACCGGAATGATACCCTGCCTGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATGTAAATGCTGGAGATGATCCCACTTATCAACCTCACGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATATATAAAGAGGTCACGAGTGGGCTTCTAGGTAGTGTCGCTCTCTAGGTGAGAGCGTGGATTGAAATCTAACATTGTTGGAGTAGATATTGGTTGTGGAATGGTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT

>NC_015589|5|4|1424919-1427147|CRT
AAAACCTGGGGGCAGGTCACGTGGATTGAAAT	TTCTCGTAACATGCGTAATCTTTGTCCAAATTTTTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATGCCAATTGCATGGCCCTGGACTGTGTTTT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATTGGTCTGCGCCGGAGGATCGCAATTACGTGG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGTTATGGAAATGACGGATCCAGATGGAAGGACAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACGACGAGCTGGATCGCAGCGACCTGGCGTGCGTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CGTTGCGTGAAGTCTTTCATGGAGATCTCTGAGGA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AGACATGATATTTCCTCCTTTAAATTTTTTATC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTTTTTGATTTGAATATGGGGTATCACCCCAACCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTGGACCTGTTTTTCTAGCTCTACTCTCTTTTGC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCCTATGTTGAATATGAAACGAAGTCTCTTTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCTCTTTGTTATACTTGTATAAAAGGGGGGATTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCCTATGTTGAATATGAAACGAAGTCTCTTTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCTCTTTGTTATACTTGTATAAAAGGGGGGATTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCCTATGTTGAATATGAAACGAAGTCTCTTTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTGGTACTAATCCCGGTGAAGGTTCTGGCTCTCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGGAAGGTAAATATTGGGACGCCACCTTAGACG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTACCTGGCAGGGCGGCGGCACCGTAAAATGCAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGGTTCAGGTTTGCAAAAAAAGCCTCCAGATGCG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GCTGCTGCGGGTCATTTTGTGCCTGCATGGCATC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AAATTTTCACCCCCTTTGTTTCGTGAGGAAATATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTAGAACGGGGAGGAGATATTGATACCATTTTAG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CGAAACAAAAATATGCTGCTGCCGGTATGGCTGC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTTTACTGGTACTCCTGTTCAGTCTGTTCCTTATGT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGTCTTTGCGGCTTCCAGTTGGTTAACTCGCTCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CAGCGTAGCATCCAGTATTCAAGAGAAAGTATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACCTAACATATATCGTTACATCTATCCTCATGT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CATTTTTGCGTTTACGTATTTCGAGATCGTACCAGG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTATTTGCTTATTTTATCAACCTTTATGATTATATT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGCCATGGACGCAGAACGGTATAACCAGAAAGATAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTGCAACAACACCGCTACCGGAATGATACCCTGCCTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GTAAATGCTGGAGATGATCCCACTTATCAACCTCAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATATAAAGAGGTCACGAGTGGGCTTCTAGGTAGT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTAACATTGTTGGAGTAGATATTGGTTGTGGAATG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT

>NC_015589|5|5|1424987-1427147|CRISPRCasFinder
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATGCCAATTGCATGGCCCTGGACTGTGTTTT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCATTGGTCTGCGCCGGAGGATCGCAATTACGTGG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGTTATGGAAATGACGGATCCAGATGGAAGGACAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACGACGAGCTGGATCGCAGCGACCTGGCGTGCGTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CGTTGCGTGAAGTCTTTCATGGAGATCTCTGAGGA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AGACATGATATTTCCTCCTTTAAATTTTTTATC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTTTTTGATTTGAATATGGGGTATCACCCCAACCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTGGACCTGTTTTTCTAGCTCTACTCTCTTTTGC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCCTATGTTGAATATGAAACGAAGTCTCTTTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCTCTTTGTTATACTTGTATAAAAGGGGGGATTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCCTATGTTGAATATGAAACGAAGTCTCTTTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CCTCTTTGTTATACTTGTATAAAAGGGGGGATTA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TCCCTATGTTGAATATGAAACGAAGTCTCTTTCC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTGGTACTAATCCCGGTGAAGGTTCTGGCTCTCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGGAAGGTAAATATTGGGACGCCACCTTAGACG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTACCTGGCAGGGCGGCGGCACCGTAAAATGCAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGGTTCAGGTTTGCAAAAAAAGCCTCCAGATGCG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GCTGCTGCGGGTCATTTTGTGCCTGCATGGCATC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AAATTTTCACCCCCTTTGTTTCGTGAGGAAATATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTAGAACGGGGAGGAGATATTGATACCATTTTAG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CGAAACAAAAATATGCTGCTGCCGGTATGGCTGC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTTTACTGGTACTCCTGTTCAGTCTGTTCCTTATGT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGTCTTTGCGGCTTCCAGTTGGTTAACTCGCTCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CAGCGTAGCATCCAGTATTCAAGAGAAAGTATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACCTAACATATATCGTTACATCTATCCTCATGT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CATTTTTGCGTTTACGTATTTCGAGATCGTACCAGG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTATTTGCTTATTTTATCAACCTTTATGATTATATT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGCCATGGACGCAGAACGGTATAACCAGAAAGATAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTGCAACAACACCGCTACCGGAATGATACCCTGCCTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GTAAATGCTGGAGATGATCCCACTTATCAACCTCAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATATAAAGAGGTCACGAGTGGGCTTCTAGGTAGT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTAACATTGTTGGAGTAGATATTGGTTGTGGAATG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT

>NC_015589|5|5|1426177-1427147|PILER-CR
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	AAATTTTCACCCCCTTTGTTTCGTGAGGAAATATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTAGAACGGGGAGGAGATATTGATACCATTTTAG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CGAAACAAAAATATGCTGCTGCCGGTATGGCTGC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTTTACTGGTACTCCTGTTCAGTCTGTTCCTTATGT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGTCTTTGCGGCTTCCAGTTGGTTAACTCGCTCA
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CAGCGTAGCATCCAGTATTCAAGAGAAAGTATCT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ACCTAACATATATCGTTACATCTATCCTCATGT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CATTTTTGCGTTTACGTATTTCGAGATCGTACCAGG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TTATTTGCTTATTTTATCAACCTTTATGATTATATT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	TGCCATGGACGCAGAACGGTATAACCAGAAAGATAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTGCAACAACACCGCTACCGGAATGATACCCTGCCTG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	GTAAATGCTGGAGATGATCCCACTTATCAACCTCAC
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	ATATAAAGAGGTCACGAGTGGGCTTCTAGGTAGT
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT	CTAACATTGTTGGAGTAGATATTGGTTGTGGAATG
GTCGCTCTCTAGGTGAGAGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013841443.1\|1419024_1419894_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_015589.1\|WP_013841451.1\|1434054_1435086_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_015589.1\|WP_143758753.1\|1423793_1424899_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NC_015589.1\|WP_041275338.1\|1435096_1435387_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015589.1\|WP_013841441.1\|1415606_1417121_+\|catalase	unknown	unknown	gnl\|CDD\|163712
NC_015589.1\|WP_013841449.1\|1432512_1433367_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NC_015589.1\|WP_013841454.1\|1441811_1442051_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273625
NC_015589.1\|WP_013841446.1\|1427180_1429622_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015589.1\|WP_013841453.1\|1439793_1440141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368116
NC_015589.1\|WP_187290619.1\|1410926_1412219_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|238386
NC_015589.1\|WP_013841447.1\|1429640_1430384_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NC_015589.1\|WP_143758863.1\|1417433_1418759_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_015589.1\|WP_041275335.1\|1413776_1414667_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_015589.1\|WP_143758753.1\|1440493_1441599_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NC_015589.1\|WP_041275334.1\|1412265_1412454_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841440.1\|1414825_1415377_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237081
NC_015589.1\|WP_013841450.1\|1433386_1434058_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015589.1\|WP_013841448.1\|1430380_1432510_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_015589.1\|WP_013841444.1\|1420812_1420968_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841438.1\|1412596_1413784_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013841443.1\|1419024_1419894_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.4331e-34
NC_015589.1\|WP_013841451.1\|1434054_1435086_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_015589.1\|WP_143758753.1\|1423793_1424899_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.47584e-30
NC_015589.1\|WP_041275338.1\|1435096_1435387_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.99412e-33
NC_015589.1\|WP_013841441.1\|1415606_1417121_+\|catalase	gnl\|CDD\|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
NC_015589.1\|WP_013841449.1\|1432512_1433367_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	1.13255e-112
NC_015589.1\|WP_013841454.1\|1441811_1442051_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|273625	TIGR01439, Uncharacterized_protein_Mb2626, looped-hinge helix DNA binding domain, AbrB family. This DNA-binding domain family includes AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. This model excludes members of family TIGR02609. [Regulatory functions, DNA interactions].	1.01246e-09
NC_015589.1\|WP_013841446.1\|1427180_1429622_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.56071e-55
NC_015589.1\|WP_013841453.1\|1439793_1440141_+\|hypothetical-protein	gnl\|CDD\|368116	pfam04783, DUF630, Protein of unknown function (DUF630). This region is sometimes found at the N-terminus of putative plant bZIP proteins. Its function is not known. Structural modelling suggests this domain may bind nucleic acids.	0.00893043
NC_015589.1\|WP_187290619.1\|1410926_1412219_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	4.75524e-118
NC_015589.1\|WP_013841447.1\|1429640_1430384_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.7038e-84
NC_015589.1\|WP_143758863.1\|1417433_1418759_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	7.2511e-160
NC_015589.1\|WP_041275335.1\|1413776_1414667_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	4.34074e-21
NC_015589.1\|WP_143758753.1\|1440493_1441599_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.47584e-30
NC_015589.1\|WP_013841440.1\|1414825_1415377_-\|hypothetical-protein	gnl\|CDD\|237081	PRK12372, PRK12372, ribonuclease III; Reviewed.	0.000729864
NC_015589.1\|WP_013841450.1\|1433386_1434058_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.01498e-29
NC_015589.1\|WP_013841448.1\|1430380_1432510_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	5.51603e-139
NC_015589.1\|WP_013841438.1\|1412596_1413784_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.18288e-82

>NC_015589.1|WP_143758753.1|1423793_1424899_+|IS3-family-transposase
MRKRFTEEQIIGILNSHENGMPVADILRQHGISEQTFYRWKSKYGGMEASDAKKLKQLEEENRRLKLLVGELTLDNQALKWVIGKKQVKPARKRKLVKELQDTFGMSERRACRLVGIGRSSHRYVPSTSEENEALKTRISELAFKWRRFGYRRIHALLQREGQKVNHKKVYRLYRLAGLAVRRRKRKRVLSGRGRPPTVTPQPNVRWSMDFVSDSTATGQRFRVFVVIDEATRECLASEVDTSITGRRVTRVLDRIAIYRGYPKEILSDNGPEFAGLTLNQWAYEHRVIQLFIDPGKPMQNSHVESFNGKLRDECLNEHWFRGVSEARRIIEEWRHEYNTVRPHSGLSNKTPVEYATDLAKKTCEQIS
>NC_015589.1|WP_013841444.1|1420812_1420968_-|hypothetical-protein
MKKYFSQKLIIILKEIKYNKKSEIKNLKVENAKLMRLIVDQALDIQALRRY
>NC_015589.1|WP_013841443.1|1419024_1419894_+|alpha/beta-hydrolase
MEERTFNTKQVNLNYVEKGVSDISILLLHGGSSRWQTFRDIIDDLSVHFHVYAIDLRGHGKSGRTENKYKMQDYVPDVREFIEKCIKKPTIIIGHSLGGMIAILIAAYYPSIVKALIIGDSPVSLDVLRSHSESQKDMTMLWREWSKNLSLDEIVEKLKAMQVPVPEREGTVSAAEAYGENHPWFEFMAENLKQNDPNMLSAIIDDFDNTYEEYDVERLFPLIKCPILIVKGDSGQGSLIRDTDIGFIKKLNNDVKHVEIKGVGHALYMQDKQSFIDAILPFINKNAQN
>NC_015589.1|WP_143758863.1|1417433_1418759_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MGHTGEGIGRAEGVAVFVPGALPGETVKVRIDQVKKNYARGELLEIIQKASARISSRCPFTKACGGCHLQHLDYQEQLRHKREMVLSALKRIGGLENIEVLTTLGMDDPWHYRNKVHLQVKKDGNRIQLGFFADGTHQMVAEVAKHKCLLVHEKMNQIMATLQELINTDSLSVYCWKRKEGLLRHVMIRRGYRSGQVMVVFVTSPEEWPGAKKLAKDLIARHPEVTSVIRNINHQPGRAVLGRENHLLAGEESIMDWIEDLKFKISASSFYQVNSIQTEALYGKVLEYAGLQGDETVVDAYCGIGTIALFLARHAGEMIGLEIVEQAVEDARQNALLNNLTNTRFYSGPVEKLLPQMASKGQKADVVILDPPRKGCAREVLNAVTAMQVPRIVYVSCDPATLARDLGILSKMGYQAAKVQPVDMFPWTSHCEAVGLVVREQ
>NC_015589.1|WP_013841441.1|1415606_1417121_+|catalase
MSDLKKKILTTNLGNPVYEDQASITAGESGPTLLQDTHLIEKLAHFDRERIPERVVHAKGTGAHGYFEVTHDVSRFTRAAFLSEIGKRTDLFVRFSTVGGEKGSADSARDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDAIKFPDFIHTQKRHPARHTQNPDMMWDFLSLTPESIHQVTILFSDRGTPKSFRHMDGHSSHTYMWYNQAGEYYWIKWHFKADLGFQTLTREEATELAGKNPDSATKDLYDSIAQGDYPSWTVYVQIMPPEEAKNYKFDPFDITKVWYHADYPLIPVGKMVLNRNPENFFAEVEQAAFSPGNFVPGIAASPDRMLQGRLFSYPDTQRHRLGPNFHQIPINAPKAAKANSYQRDGFMAIDGNGGASPNYYPNSFGGPAPDPQFAPPPVDVAGMVSRHPYVLSDIDFVQAGELYRRVMSDQDRANLVSNICDSLGQAQQRIQLRQTALFYKADPDYGQKVAEGLGLDLAAVKDLAAMSQEERVKATQA
>NC_015589.1|WP_013841440.1|1414825_1415377_-|hypothetical-protein
MTQYKINRKKRRINLPSRCNCYQNDYVDLVVEGAGIRLGRLSSLDIPAEVSAYIPRVEVRRRHYQNGELVCEDEKIYNSITVVHAPRHPSENPSGSSLPVFTPATGEKSKEQPAIAPSDQSLFPPQLPTAPNPEQPDAPEPPDIPSQPEPHPPPVAPFSAKPLRKNFPGHPSPSITINKKPLF
>NC_015589.1|WP_041275335.1|1413776_1414667_-|EamA-family-transporter
MSQKNQPWAGIFLVVIATIALSTEAIAAKIAYQGGATVLTTLTVRYVLAVLFFAMMLHSAGTSIKLSLKHTLQAIGLGIGCQAVTALSLFNAYRYIPAAMAILLLYVYPTITAILAYFILKEPLHWQKWLALVLTSTGCVIILGHPQENLHPLGVALALLAALINALFLVLSGKVLKEIPVPVFNTYLTGSCALLFLGLGSLLGQLNFNLPLRAWLALLFLSIVCTVVAMSALLKGVTLIGPSRSAIISTLEPAFTAVLGFFLLSESLSLWQMIGGAVILSGVLLQKKEPEVQNNG
>NC_015589.1|WP_013841438.1|1412596_1413784_-|MFS-transporter
MDSRRWILAAVAVATFLDTLIFGIIIPILPVYSENLGATPFTLGVIFAAYSASLLAGTIPLGLLSDRYGRKKIMLLGLLTLSLSTLGFTLANSLWLLILIRLIQGFSAGATWTAGPALVADLYPPDQRGAKMGIISAATGFGFLIGPAAGGLLYELGGYRLPFLIGTILSLIVGLFVLKVLPADKTNGKSRKRDHSLLEVLQFKGVPVSLTVILLGSTGFGFIDPILPGYFMDKFGISPGIVGILFGLISLSHVSSAPVIGKLSDSWGRLKLIQWGLVGTAAVIPLVSLSNSLITTAMVMGLLGITFGLILTPTMPLLADSVMLQSKDSGEASYGAAFGLYNTAFSLGYLWGPLFGGGWMEFLPLWGLFALYSLLLLTLFLFTLPRNKKEIRGLQ
>NC_015589.1|WP_041275334.1|1412265_1412454_-|hypothetical-protein
MAKQTKKITSFLLNELIVFEKIHAAQIKAKNLKQSKEPYISYDYFGQAIYWVEPARLPSTIR
>NC_015589.1|WP_187290619.1|1410926_1412219_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MPLKYWNNRISPIVVSLVGCSNSGKTTLLEKLIQSLKDKGYRVGTVKHHRGAFELDIPGKDTWRHAQAGADVVALATPGGLGIIRKLQQEPSLKDITDYMSGVDIVLVEGIKKGSQPKIEVVRSDISSAPVCSLEDLTAVVTDLPLTLDIPVFDLNKIEQVADFIEDRFLKQEMIPKPVERLTAEQLKRYHRNIKLPGVGQEGQIKLLNSSVLVVGAGGLGSPVSLYLAAAGIGRLGLADEDSVDLSNLQRQIVHATGDIGRSKVESARDKLTAINPDVQIEIYHQRITADNVDQILNSYDLVVDATDNLESRYLLNKACIEAKKPFIYGGVLSMVGQVMTILPGQGPCFRCIFREGPSEKAVKSTADVGILGAVAGTIGCLQSMEAIKCLLNRGNLLVGRILTMDGLSMSFQEVEICRDPECPDCGHLK
>NC_015589.1|WP_013841446.1|1427180_1429622_+|CRISPR-associated-helicase/endonuclease-Cas3
MDSERFIAHIRKADKSEQYVDEHNDQVAELASAIAESYGLAKIAKLAGRHHDDGKNTPEFTAYIRAAVEGKRVVRGSVIHSTHGAILVNELASLKRNSRLTAEIVRTAIMSHHGLRDCLSLDGDVVFVEAAENIADSYESVKETVYQRYGRDFINQEFIDAGLDTHVITKNIQELQKKSKLLGSPYFYLAMFTRLITSIVIDADRTDTACFEDKRALPQRRALDERKEMWKKYLVHYESQLEKLQEGKKTSSLDPYRGEISRACAEFDGGEAGIFRLVVPCGAGKTLAALRYALHTARRYGKERIFYIAPFNSILEQNATEIAKFIGDPDAVLEHHSNIIFSAEENKDKSEDEKRYQLLTENWAQSPVVATTAVQFLNTLFAGQTSCIRRMQALGNSVIILDEIQALPIKVLKLFNGAMNFLASFCKSSVVLCSATQPLLDRVDHYRILPPRSIIENEEKYNEAFRRVQIVNCMKEQGYSREEAADFIVSQLESTRSVLAIVNTKRSAREIFKHIQDKLGNETPYRIFHLSTNMCPAHRSRVLKHLRERLKDTDLGEKIICISTSLIEAGVDVSFERVVRSLTGLDSIVQAAGRCNRNYETSCGIVSIINLRDERTSGQGYLKEAQKATQELLYSIKISPEGYPEGALSKDAMEEYYARYFQPLLEEMAYRLKFDPEHTLLDLLTSNPSGQRGFEEKYPQERPPELKQAFKEAGGAFSVIDDDGKVDVFIEYDEEARKRLQKLREATTLQEKRTALRQLQPYTVQLRDNDWIKTQRTALAPEDGGILVLPPGYYDGEYGVDETLNIEMETLII
>NC_015589.1|WP_013841447.1|1429640_1430384_+|type-I-C-CRISPR-associated-protein-Cas5
MEIKRNTVEFLVRGDRALFSDPVTRVGGEKTSYYVPTYEALKGILASVYWKPTLVWIIDAVRVMNMIQTASEGIRTKNYNGGNDLSIYTYLKDVRYQVRAHFVWNENRPELAADRNEHKHHNIARRMIERGGRRDIFLGARECQGTVEPCVFGECPGTYDQVEELQLGYMFHGFTYADEAVRDGEKGHMSVRFHHVLMKRGVIEFPGPEEISDKDRRILHKMSVKPFGETIGNFSGLAEFAAEEVTE
>NC_015589.1|WP_013841448.1|1430380_1432510_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MNWVSSLCALYDANAERAGQAERWKKKNLVLFPVGYDTMEAQIEIHIDQEGNYLGAHLLEKDEAETLVPYPEGRTSGLKALPLFDSLSYVAGDLLEVLTFYFPDAKNEKEKQSKIARLKGAFPLYLAGLKTWCDSPFSHPKVQAIYRYVTKQTVAQDLIRSQVLPMDENGIVSDKVKVQNTSLDKAFVRFRVFMHDKRLPEDILDNRDNAHDSAVWLDRSVQRSFINYYLSTFQAKDLCYMTGEYTPIAKTNPLKIRGKWDTKAKLISANDDTNFTYRGRFHTKEKETGYNEALSIGYVASQKAHNALKWIIRRQGFSRDGVCIVAWENALRDLPDFYASAADILSQVPENAADGVEVELEEEVLFEEDEAEIPETNYVSAKKFNAALDGYKAKLSGISRMVVLALDSATPGRLAITYYKELASSRYLQNIRQWHDSCCWKHEYIQDKQRKVYEGMASIREIALAIYGTEQGEDNNPQLKLSKNSDNKSPMLVAAFERLRPCIIDGAAIPRDMVRAAVLKASNPLAYKAKFNYHKVLHIACSMVKRLYWEKQQRNEREGVILGMELDKTNRDRSYLYGRMLAVAERVERSTYEKGETRITNAERYMQAFSRSPFRTWKIIWNNLQPYMKQLKPSAREYYKNLLGEITELFAYEDRISNELLDGKYLIGYDCQRMDLRRWPKEQISSHEGTNVSQKRTNECHQDDQEGEE
>NC_015589.1|WP_013841449.1|1432512_1433367_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTLQNKIDFAAIVSVTRANINGDPLNGNRPREDYEGHGIFSDVAIKRKLRNRLQDLGECIFVQSDDRSNDGYKSLKDRADGYGEFKTEMSKGKKADRDKCMQIACRKWFDVRAFGQVFAFKGDEVSVGVRGPVSVQQAVSVSPIDIVDMQITKSVNSEAGKSGKSSDTMGMKHYVNFGLYVIRGSINCQLAEKTGFTAGDAQKLKEALCTLFENDASSARPEGSCEVCRVYWWEHADKTPKETSAVIQRALRISSKKDIPQSFDDYEIKLDQTECVPEIINLV
>NC_015589.1|WP_013841450.1|1433386_1434058_+|CRISPR-associated-protein-Cas4
MEYQEEDFLLLSGIQHYVFCKRQWALIHIEQQWQENLRTIEGGILHEKTHDSTIKEKRGALIISRGMGVFSRTLGITGACDVVEFHKSRDGVTLYGREGTYQPVPVEYKRGKPKQGNADVLQLCAQAMCLEEMLLCTIPEGFLYYGEPKRRMKVTLDEEIREEVKRICQEMHGLYDKRYTPKVRTTKACKACSLSELCLPKLCKNPSALGYMKKNISEIEADQ
>NC_015589.1|WP_013841451.1|1434054_1435086_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYITSPNTYLSLDGENIVVLKDDVEALRVPLHNLEGIIAFGYTGASPALMGACAKRNIALSFMKSSGKFLGRVVGEVRGNVTLRKAQYRLSDDTEESHKIAKSFILGKIYNARWIVERATRDHAARLDTDKLKGVCQTLANALKLVENSKDLGQLRGVEGEAAAQYFRVLDDLILQQKEDFYFNSRNKRPPLDNVNAMLSFVYTLLAHDAAAALETVGLDPYVGFLHRDRPGRISLALDLMEELRAVYADRFVISLINRREVNPGGFTRMENGAVIMDDDTRRDILKAWQSRKQEEIRHPFLQEKMEWGLVPYAQAMLLARFIRGDLDGYPAFMWK
>NC_015589.1|WP_041275338.1|1435096_1435387_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTQTAAGRKRLRQVAKQCVNYGQRVQNSVFECVLDAAKFREVQHKLEQIIDRETDSLRFYMLGNNYKNKVEHIGAKTSFNVEDTLII
>NC_015589.1|WP_013841453.1|1439793_1440141_+|hypothetical-protein
MVDIDFILNILHPNRSEAYRRYFDLCKEIQVPQLPPEVSLPDEVHVGREGKQRESSTTNKLTWEEIIIKITRNNVEKEKLLSRCRERRIVAARNRLIYEAINQEVLSRRELAKIL
>NC_015589.1|WP_143758753.1|1440493_1441599_+|IS3-family-transposase
MRKRFTEEQIIGILNSHENGMPVADILRQHGISEQTFYRWKSKYGGMEASDAKKLKQLEEENRRLKLLVGELTLDNQALKWVIGKKQVKPARKRKLVKELQDTFGMSERRACRLVGIGRSSHRYVPSTSEENEALKTRISELAFKWRRFGYRRIHALLQREGQKVNHKKVYRLYRLAGLAVRRRKRKRVLSGRGRPPTVTPQPNVRWSMDFVSDSTATGQRFRVFVVIDEATRECLASEVDTSITGRRVTRVLDRIAIYRGYPKEILSDNGPEFAGLTLNQWAYEHRVIQLFIDPGKPMQNSHVESFNGKLRDECLNEHWFRGVSEARRIIEEWRHEYNTVRPHSGLSNKTPVEYATDLAKKTCEQIS
>NC_015589.1|WP_013841454.1|1441811_1442051_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MTSPEGKYAWTVKVGEKGQFVIPKEARTIFNIKPGDTLIVLADEKQGIAIPPPDMFTQLAKAIFPQNRPSANGGREEEE

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Crispr_ID: NC_015589_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_6

1435556-1439454

TypeI

Consensus_repeat	Method
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	PILER-CR
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CRISPRCasFinder
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CRT

58 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_015589_6

>merge|NC_015589|6|1435556-1439454|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAACTGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTACGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCTTATTAAACCATGCGCAATCTATACGACAGTAAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTATCAGCCCCCAAAAGGGCCAGATACCGGGGATGGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTCAATCCGCGCAGGAAGCCGGTATATCCATCTCCTGTCGCTCTCTGTACGAGAGCGTGGATTTAAACACTCTTTCCTCACAAACATCATCCCGAACGAATGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACAGGCCAATCGTGTTTCAAATCCTTATAGGTAGGCTGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTAGGAATGACACATAATTTACTGTTGCCTCTAGCCCGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCCACTTGGCAGGGAGGCGGCACCGTAAAATGCACGTCGCTCTCTGTACGAGAGCGTGGATTTAAACAATGTCACCTCCGGATCATCAATATTCTGTGGCGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTTATCATTGTCCAAATTTGGGCAAAAGTCATTGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCCATATTTTTACATTTTATTGACTTCAGAGAAAATTTGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTACGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTCCAGGCGTCAAGAACCCTATTAAAGTTTGCACCGTCGCTCTCTGTACGAGAGCGTGGATTTAAACGCCCCTGGATACGCTCCACGTATCGGCGGTACTATGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCTGAACTACTACGGGCAGCATTGTTATATTGATCAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACAATATCCATATGGTCACACTCTACCAACGAATAGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCGTGTCGAAATAAGAGCGATCATGAACAGGGCAAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACAGAGAGAAAGGACCGTTATTGGCGAAACAGGCCGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACATCCATAAACCGGGTCGACTTCGGGGTCTTGTTGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCCTGATACCGACTACACCAAACACGTTCCGAAAAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACGCTTCGCCACCATGCCCTCCAACCCCTGGACCTTGAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTGAAGAACAGTCTACTATAGAAAAATTAAAAAGTGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCAGGCAACTACTTGATGATGGGAAAGCGAAATACCGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCATTGTTGTCATTTGCTTGTTTAGCTTTTTTATGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCATGTTCTTTTTTTGCACATTACATCACATCATGGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCCTATCTGCTCAGGAGTATACGGCTTAACACCACGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCGTTATCTTCAGGCCAAAAAGTTAATGTGATTAAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCCTATCTGCTCAGGAGTATACGGCTTAACACCACGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCGTGATATCCTGCAGACGCTCCACCCGGACGGCTGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTTGATCTCTTTTATCATTTCATGTTTGCCAGTAACGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTGATATATTAATACTTGAGACTAAAATTCAAAGTAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCTATATACCATATCCTGAGCGTGATTGGAACGAAAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCTCCTATTTATTCTGGAATTAGAATGTAGGTAAAAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTGCACATATCAGAAGTAAATTTAGCGTGAGTCGAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCATACACCGAAATTACTCCTAAAGGCTCGTCCACCGTCGCTCTCTGTACGAGAGCGTGGATTTAAACACTGTATAGTTCAAGCGCTAAATTATCATCTTTGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTTCACTGTGGGATACTTTGTGTTCGCCCACACTGCGTCGCTCTCTGTACGAGAGCGTGGATTTAAACGTATTGAAAAGCTTTGGAGTTTATGTGCTATGGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCTGACGAACTCCTGGCCATGATTGAAAACATTCGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTGCATATACGCTTTTATATCAGTCCAAATTGTGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTATTCAAACAGTAGATATAGAAAAATTAATTAAAAGTCGCTCTCTGTACGAGAACGTGGATTTAAACTGGATGAACCGCAAAGCTTTGCTGGTTAGGTATTCGTCGCTCTCTGTACGAGAGCGTGGATTTAAACATCTGATGGCCACCCCCACCATCTGTGTGATGACAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACAGAGCAGATGCCGAACGGACGCCGCAATGGAAGGGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACAGGTCCAAACCACAATCTCTTATCCTTGTATCACGTGTCGCTCTCTGTACGAGAGCGTGGATTTAAACAGGAAATGAGAAACCGGAAGCGTAAACTGGTAGACGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCTAGAAGGCCGAGGTTTTAAGCACGTGGGAACTTGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTTCAAAGAAAGATAGAAAAGATCTAACTATATTAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCAGAGGAAAGCGCATGGAATTTCGTATTCCATAAAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTCAAACCCCATGCTCATCCTTGGTGACGCTGTACGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACCCGTTCCAGATGATGCGCCAGTTGAAATACCAAGAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTTTTGTACCATTAATAGTTCTAGAAGATTATAAAGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTGGAATTTCAATCCGTGTCCTACTCATACACAATGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTAGGGAAAAAGGTTTTGCAGCGGCAGAGGTCAATGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTGTCCAGTTCGTGCCATACTCCTCGGGTTCCTAGGTCGCTCTCTGTACGAGAGCGTGGATTTAAACTTGAGGATAACCCATGACAGATGTTGCCATTTACGTCGCTCTCTGTACGAGAGCGTGGATTTAAAC

>NC_015589|6|6|1435556-1439454|PILER-CR
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTTATTAAACCATGCGCAATCTATACGACAGTAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TATCAGCCCCCAAAAGGGCCAGATACCGGGGATGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTCAATCCGCGCAGGAAGCCGGTATATCCATCTCCT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ACTCTTTCCTCACAAACATCATCCCGAACGAATG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGGCCAATCGTGTTTCAAATCCTTATAGGTAGGCT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TAGGAATGACACATAATTTACTGTTGCCTCTAGCCC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCACTTGGCAGGGAGGCGGCACCGTAAAATGCAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AATGTCACCTCCGGATCATCAATATTCTGTGGCG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTATCATTGTCCAAATTTGGGCAAAAGTCATTG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCATATTTTTACATTTTATTGACTTCAGAGAAAATTT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TCCAGGCGTCAAGAACCCTATTAAAGTTTGCACC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	GCCCCTGGATACGCTCCACGTATCGGCGGTACTAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTGAACTACTACGGGCAGCATTGTTATATTGATCA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AATATCCATATGGTCACACTCTACCAACGAATAG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CGTGTCGAAATAAGAGCGATCATGAACAGGGCAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGAGAGAAAGGACCGTTATTGGCGAAACAGGCCG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ATCCATAAACCGGGTCGACTTCGGGGTCTTGTTG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCTGATACCGACTACACCAAACACGTTCCGAAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	GCTTCGCCACCATGCCCTCCAACCCCTGGACCTTGA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGAAGAACAGTCTACTATAGAAAAATTAAAAAGT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CAGGCAACTACTTGATGATGGGAAAGCGAAATACC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CATTGTTGTCATTTGCTTGTTTAGCTTTTTTAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CATGTTCTTTTTTTGCACATTACATCACATCATGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCTATCTGCTCAGGAGTATACGGCTTAACACCAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CGTTATCTTCAGGCCAAAAAGTTAATGTGATTAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCTATCTGCTCAGGAGTATACGGCTTAACACCAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CGTGATATCCTGCAGACGCTCCACCCGGACGGCTG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTGATCTCTTTTATCATTTCATGTTTGCCAGTAAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGATATATTAATACTTGAGACTAAAATTCAAAGTA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTATATACCATATCCTGAGCGTGATTGGAACGAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTCCTATTTATTCTGGAATTAGAATGTAGGTAAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGCACATATCAGAAGTAAATTTAGCGTGAGTCGA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CATACACCGAAATTACTCCTAAAGGCTCGTCCACC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ACTGTATAGTTCAAGCGCTAAATTATCATCTTT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTCACTGTGGGATACTTTGTGTTCGCCCACACTGC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	GTATTGAAAAGCTTTGGAGTTTATGTGCTATGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTGACGAACTCCTGGCCATGATTGAAAACATTC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGCATATACGCTTTTATATCAGTCCAAATTGT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TATTCAAACAGTAGATATAGAAAAATTAATTAAAA
GTCGCTCTCTGTACGAGAACGTGGATTTAAAC	TGGATGAACCGCAAAGCTTTGCTGGTTAGGTATTC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ATCTGATGGCCACCCCCACCATCTGTGTGATGACA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGAGCAGATGCCGAACGGACGCCGCAATGGAAGGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGGTCCAAACCACAATCTCTTATCCTTGTATCACGT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGGAAATGAGAAACCGGAAGCGTAAACTGGTAGAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTAGAAGGCCGAGGTTTTAAGCACGTGGGAACTT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTCAAAGAAAGATAGAAAAGATCTAACTATATTA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CAGAGGAAAGCGCATGGAATTTCGTATTCCATAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TCAAACCCCATGCTCATCCTTGGTGACGCTGTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCGTTCCAGATGATGCGCCAGTTGAAATACCAAGA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTTTGTACCATTAATAGTTCTAGAAGATTATAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGGAATTTCAATCCGTGTCCTACTCATACACAAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTAGGGAAAAAGGTTTTGCAGCGGCAGAGGTCAAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGTCCAGTTCGTGCCATACTCCTCGGGTTCCTAG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGAGGATAACCCATGACAGATGTTGCCATTTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC

>NC_015589|6|6|1435556-1439454|CRISPRCasFinder
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTTATTAAACCATGCGCAATCTATACGACAGTAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TATCAGCCCCCAAAAGGGCCAGATACCGGGGATGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTCAATCCGCGCAGGAAGCCGGTATATCCATCTCCT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ACTCTTTCCTCACAAACATCATCCCGAACGAATG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGGCCAATCGTGTTTCAAATCCTTATAGGTAGGCT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TAGGAATGACACATAATTTACTGTTGCCTCTAGCCC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCACTTGGCAGGGAGGCGGCACCGTAAAATGCAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AATGTCACCTCCGGATCATCAATATTCTGTGGCG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTATCATTGTCCAAATTTGGGCAAAAGTCATTG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCATATTTTTACATTTTATTGACTTCAGAGAAAATTT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TCCAGGCGTCAAGAACCCTATTAAAGTTTGCACC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	GCCCCTGGATACGCTCCACGTATCGGCGGTACTAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTGAACTACTACGGGCAGCATTGTTATATTGATCA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AATATCCATATGGTCACACTCTACCAACGAATAG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CGTGTCGAAATAAGAGCGATCATGAACAGGGCAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGAGAGAAAGGACCGTTATTGGCGAAACAGGCCG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ATCCATAAACCGGGTCGACTTCGGGGTCTTGTTG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCTGATACCGACTACACCAAACACGTTCCGAAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	GCTTCGCCACCATGCCCTCCAACCCCTGGACCTTGA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGAAGAACAGTCTACTATAGAAAAATTAAAAAGT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CAGGCAACTACTTGATGATGGGAAAGCGAAATACC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CATTGTTGTCATTTGCTTGTTTAGCTTTTTTAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CATGTTCTTTTTTTGCACATTACATCACATCATGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCTATCTGCTCAGGAGTATACGGCTTAACACCAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CGTTATCTTCAGGCCAAAAAGTTAATGTGATTAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCTATCTGCTCAGGAGTATACGGCTTAACACCAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CGTGATATCCTGCAGACGCTCCACCCGGACGGCTG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTGATCTCTTTTATCATTTCATGTTTGCCAGTAAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGATATATTAATACTTGAGACTAAAATTCAAAGTA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTATATACCATATCCTGAGCGTGATTGGAACGAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTCCTATTTATTCTGGAATTAGAATGTAGGTAAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGCACATATCAGAAGTAAATTTAGCGTGAGTCGA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CATACACCGAAATTACTCCTAAAGGCTCGTCCACC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ACTGTATAGTTCAAGCGCTAAATTATCATCTTT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTCACTGTGGGATACTTTGTGTTCGCCCACACTGC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	GTATTGAAAAGCTTTGGAGTTTATGTGCTATGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTGACGAACTCCTGGCCATGATTGAAAACATTC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGCATATACGCTTTTATATCAGTCCAAATTGT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TATTCAAACAGTAGATATAGAAAAATTAATTAAAA
GTCGCTCTCTGTACGAGAACGTGGATTTAAAC	TGGATGAACCGCAAAGCTTTGCTGGTTAGGTATTC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ATCTGATGGCCACCCCCACCATCTGTGTGATGACA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGAGCAGATGCCGAACGGACGCCGCAATGGAAGGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGGTCCAAACCACAATCTCTTATCCTTGTATCACGT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGGAAATGAGAAACCGGAAGCGTAAACTGGTAGAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTAGAAGGCCGAGGTTTTAAGCACGTGGGAACTT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTCAAAGAAAGATAGAAAAGATCTAACTATATTA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CAGAGGAAAGCGCATGGAATTTCGTATTCCATAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TCAAACCCCATGCTCATCCTTGGTGACGCTGTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCGTTCCAGATGATGCGCCAGTTGAAATACCAAGA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTTTGTACCATTAATAGTTCTAGAAGATTATAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGGAATTTCAATCCGTGTCCTACTCATACACAAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTAGGGAAAAAGGTTTTGCAGCGGCAGAGGTCAAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGTCCAGTTCGTGCCATACTCCTCGGGTTCCTAG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGAGGATAACCCATGACAGATGTTGCCATTTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC

>NC_015589|6|5|1435556-1439454|CRT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTTATTAAACCATGCGCAATCTATACGACAGTAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TATCAGCCCCCAAAAGGGCCAGATACCGGGGATGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTCAATCCGCGCAGGAAGCCGGTATATCCATCTCCT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ACTCTTTCCTCACAAACATCATCCCGAACGAATG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGGCCAATCGTGTTTCAAATCCTTATAGGTAGGCT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TAGGAATGACACATAATTTACTGTTGCCTCTAGCCC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCACTTGGCAGGGAGGCGGCACCGTAAAATGCAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AATGTCACCTCCGGATCATCAATATTCTGTGGCG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTATCATTGTCCAAATTTGGGCAAAAGTCATTG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCATATTTTTACATTTTATTGACTTCAGAGAAAATTT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGCTAGGGCACCATTAGCAAAACTCTCCAGGTTTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TCCAGGCGTCAAGAACCCTATTAAAGTTTGCACC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	GCCCCTGGATACGCTCCACGTATCGGCGGTACTAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTGAACTACTACGGGCAGCATTGTTATATTGATCA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AATATCCATATGGTCACACTCTACCAACGAATAG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CGTGTCGAAATAAGAGCGATCATGAACAGGGCAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGAGAGAAAGGACCGTTATTGGCGAAACAGGCCG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ATCCATAAACCGGGTCGACTTCGGGGTCTTGTTG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCTGATACCGACTACACCAAACACGTTCCGAAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	GCTTCGCCACCATGCCCTCCAACCCCTGGACCTTGA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGAAGAACAGTCTACTATAGAAAAATTAAAAAGT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CAGGCAACTACTTGATGATGGGAAAGCGAAATACC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CATTGTTGTCATTTGCTTGTTTAGCTTTTTTAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CATGTTCTTTTTTTGCACATTACATCACATCATGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCTATCTGCTCAGGAGTATACGGCTTAACACCAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CGTTATCTTCAGGCCAAAAAGTTAATGTGATTAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCTATCTGCTCAGGAGTATACGGCTTAACACCAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CGTGATATCCTGCAGACGCTCCACCCGGACGGCTG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTGATCTCTTTTATCATTTCATGTTTGCCAGTAAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGATATATTAATACTTGAGACTAAAATTCAAAGTA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTATATACCATATCCTGAGCGTGATTGGAACGAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTCCTATTTATTCTGGAATTAGAATGTAGGTAAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGCACATATCAGAAGTAAATTTAGCGTGAGTCGA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CATACACCGAAATTACTCCTAAAGGCTCGTCCACC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ACTGTATAGTTCAAGCGCTAAATTATCATCTTT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTCACTGTGGGATACTTTGTGTTCGCCCACACTGC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	GTATTGAAAAGCTTTGGAGTTTATGTGCTATGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTGACGAACTCCTGGCCATGATTGAAAACATTC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGCATATACGCTTTTATATCAGTCCAAATTGT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TATTCAAACAGTAGATATAGAAAAATTAATTAAAA
GTCGCTCTCTGTACGAGAACGTGGATTTAAAC	TGGATGAACCGCAAAGCTTTGCTGGTTAGGTATTC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	ATCTGATGGCCACCCCCACCATCTGTGTGATGACA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGAGCAGATGCCGAACGGACGCCGCAATGGAAGGG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGGTCCAAACCACAATCTCTTATCCTTGTATCACGT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	AGGAAATGAGAAACCGGAAGCGTAAACTGGTAGAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CTAGAAGGCCGAGGTTTTAAGCACGTGGGAACTT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTCAAAGAAAGATAGAAAAGATCTAACTATATTA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CAGAGGAAAGCGCATGGAATTTCGTATTCCATAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TCAAACCCCATGCTCATCCTTGGTGACGCTGTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCCGGTTAATGCCTTGGAAGAAAAAACGTGGTGCA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	CCGTTCCAGATGATGCGCCAGTTGAAATACCAAGA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTTTTGTACCATTAATAGTTCTAGAAGATTATAAA
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGGAATTTCAATCCGTGTCCTACTCATACACAAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTAGGGAAAAAGGTTTTGCAGCGGCAGAGGTCAAT
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TGTCCAGTTCGTGCCATACTCCTCGGGTTCCTAG
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC	TTGAGGATAACCCATGACAGATGTTGCCATTTAC
GTCGCTCTCTGTACGAGAGCGTGGATTTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013841447.1\|1429640_1430384_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NC_015589.1\|WP_013841451.1\|1434054_1435086_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_015589.1\|WP_013841461.1\|1448223_1449447_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_015589.1\|WP_143758753.1\|1423793_1424899_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NC_015589.1\|WP_013841443.1\|1419024_1419894_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_015589.1\|WP_187290620.1\|1447291_1447432_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841446.1\|1427180_1429622_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015589.1\|WP_041275648.1\|1442050_1443121_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|235167
NC_015589.1\|WP_013841449.1\|1432512_1433367_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|226175
NC_015589.1\|WP_013841453.1\|1439793_1440141_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368116
NC_015589.1\|WP_041275338.1\|1435096_1435387_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015589.1\|WP_013841457.1\|1443967_1444843_+\|transposase	unknown	unknown	gnl\|CDD\|376616
NC_015589.1\|WP_013841456.1\|1443448_1443868_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NC_015589.1\|WP_013841458.1\|1445028_1445784_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NC_015589.1\|WP_143758753.1\|1440493_1441599_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NC_015589.1\|WP_013841450.1\|1433386_1434058_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015589.1\|WP_013841448.1\|1430380_1432510_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_015589.1\|WP_013841444.1\|1420812_1420968_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841454.1\|1441811_1442051_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273625
NC_015589.1\|WP_041275650.1\|1446000_1446888_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013841447.1\|1429640_1430384_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.7038e-84
NC_015589.1\|WP_013841451.1\|1434054_1435086_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_015589.1\|WP_013841461.1\|1448223_1449447_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NC_015589.1\|WP_143758753.1\|1423793_1424899_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.47584e-30
NC_015589.1\|WP_013841443.1\|1419024_1419894_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.4331e-34
NC_015589.1\|WP_143758753.1\|1440493_1441599_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.47584e-30
NC_015589.1\|WP_041275648.1\|1442050_1443121_+\|acyltransferase-family-protein	gnl\|CDD\|235167	PRK03854, opgC, glucans biosynthesis protein MdoC.	1.07416e-13
NC_015589.1\|WP_013841449.1\|1432512_1433367_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|226175	COG3649, COG3649, CRISPR system related protein [Defense mechanisms].	1.13255e-112
NC_015589.1\|WP_013841446.1\|1427180_1429622_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.56071e-55
NC_015589.1\|WP_013841453.1\|1439793_1440141_+\|hypothetical-protein	gnl\|CDD\|368116	pfam04783, DUF630, Protein of unknown function (DUF630). This region is sometimes found at the N-terminus of putative plant bZIP proteins. Its function is not known. Structural modelling suggests this domain may bind nucleic acids.	0.00893043
NC_015589.1\|WP_041275338.1\|1435096_1435387_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.99412e-33
NC_015589.1\|WP_013841457.1\|1443967_1444843_+\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	4.57762e-17
NC_015589.1\|WP_013841456.1\|1443448_1443868_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	6.96086e-32
NC_015589.1\|WP_013841458.1\|1445028_1445784_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.82937e-64
NC_015589.1\|WP_013841450.1\|1433386_1434058_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.01498e-29
NC_015589.1\|WP_013841448.1\|1430380_1432510_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	5.51603e-139
NC_015589.1\|WP_013841454.1\|1441811_1442051_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|273625	TIGR01439, Uncharacterized_protein_Mb2626, looped-hinge helix DNA binding domain, AbrB family. This DNA-binding domain family includes AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. This model excludes members of family TIGR02609. [Regulatory functions, DNA interactions].	1.01246e-09
NC_015589.1\|WP_041275650.1\|1446000_1446888_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	6.59587e-48

>NC_015589.1|WP_041275338.1|1435096_1435387_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTQTAAGRKRLRQVAKQCVNYGQRVQNSVFECVLDAAKFREVQHKLEQIIDRETDSLRFYMLGNNYKNKVEHIGAKTSFNVEDTLII
>NC_015589.1|WP_013841451.1|1434054_1435086_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYITSPNTYLSLDGENIVVLKDDVEALRVPLHNLEGIIAFGYTGASPALMGACAKRNIALSFMKSSGKFLGRVVGEVRGNVTLRKAQYRLSDDTEESHKIAKSFILGKIYNARWIVERATRDHAARLDTDKLKGVCQTLANALKLVENSKDLGQLRGVEGEAAAQYFRVLDDLILQQKEDFYFNSRNKRPPLDNVNAMLSFVYTLLAHDAAAALETVGLDPYVGFLHRDRPGRISLALDLMEELRAVYADRFVISLINRREVNPGGFTRMENGAVIMDDDTRRDILKAWQSRKQEEIRHPFLQEKMEWGLVPYAQAMLLARFIRGDLDGYPAFMWK
>NC_015589.1|WP_013841450.1|1433386_1434058_+|CRISPR-associated-protein-Cas4
MEYQEEDFLLLSGIQHYVFCKRQWALIHIEQQWQENLRTIEGGILHEKTHDSTIKEKRGALIISRGMGVFSRTLGITGACDVVEFHKSRDGVTLYGREGTYQPVPVEYKRGKPKQGNADVLQLCAQAMCLEEMLLCTIPEGFLYYGEPKRRMKVTLDEEIREEVKRICQEMHGLYDKRYTPKVRTTKACKACSLSELCLPKLCKNPSALGYMKKNISEIEADQ
>NC_015589.1|WP_013841449.1|1432512_1433367_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTLQNKIDFAAIVSVTRANINGDPLNGNRPREDYEGHGIFSDVAIKRKLRNRLQDLGECIFVQSDDRSNDGYKSLKDRADGYGEFKTEMSKGKKADRDKCMQIACRKWFDVRAFGQVFAFKGDEVSVGVRGPVSVQQAVSVSPIDIVDMQITKSVNSEAGKSGKSSDTMGMKHYVNFGLYVIRGSINCQLAEKTGFTAGDAQKLKEALCTLFENDASSARPEGSCEVCRVYWWEHADKTPKETSAVIQRALRISSKKDIPQSFDDYEIKLDQTECVPEIINLV
>NC_015589.1|WP_013841448.1|1430380_1432510_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MNWVSSLCALYDANAERAGQAERWKKKNLVLFPVGYDTMEAQIEIHIDQEGNYLGAHLLEKDEAETLVPYPEGRTSGLKALPLFDSLSYVAGDLLEVLTFYFPDAKNEKEKQSKIARLKGAFPLYLAGLKTWCDSPFSHPKVQAIYRYVTKQTVAQDLIRSQVLPMDENGIVSDKVKVQNTSLDKAFVRFRVFMHDKRLPEDILDNRDNAHDSAVWLDRSVQRSFINYYLSTFQAKDLCYMTGEYTPIAKTNPLKIRGKWDTKAKLISANDDTNFTYRGRFHTKEKETGYNEALSIGYVASQKAHNALKWIIRRQGFSRDGVCIVAWENALRDLPDFYASAADILSQVPENAADGVEVELEEEVLFEEDEAEIPETNYVSAKKFNAALDGYKAKLSGISRMVVLALDSATPGRLAITYYKELASSRYLQNIRQWHDSCCWKHEYIQDKQRKVYEGMASIREIALAIYGTEQGEDNNPQLKLSKNSDNKSPMLVAAFERLRPCIIDGAAIPRDMVRAAVLKASNPLAYKAKFNYHKVLHIACSMVKRLYWEKQQRNEREGVILGMELDKTNRDRSYLYGRMLAVAERVERSTYEKGETRITNAERYMQAFSRSPFRTWKIIWNNLQPYMKQLKPSAREYYKNLLGEITELFAYEDRISNELLDGKYLIGYDCQRMDLRRWPKEQISSHEGTNVSQKRTNECHQDDQEGEE
>NC_015589.1|WP_013841447.1|1429640_1430384_+|type-I-C-CRISPR-associated-protein-Cas5
MEIKRNTVEFLVRGDRALFSDPVTRVGGEKTSYYVPTYEALKGILASVYWKPTLVWIIDAVRVMNMIQTASEGIRTKNYNGGNDLSIYTYLKDVRYQVRAHFVWNENRPELAADRNEHKHHNIARRMIERGGRRDIFLGARECQGTVEPCVFGECPGTYDQVEELQLGYMFHGFTYADEAVRDGEKGHMSVRFHHVLMKRGVIEFPGPEEISDKDRRILHKMSVKPFGETIGNFSGLAEFAAEEVTE
>NC_015589.1|WP_013841446.1|1427180_1429622_+|CRISPR-associated-helicase/endonuclease-Cas3
MDSERFIAHIRKADKSEQYVDEHNDQVAELASAIAESYGLAKIAKLAGRHHDDGKNTPEFTAYIRAAVEGKRVVRGSVIHSTHGAILVNELASLKRNSRLTAEIVRTAIMSHHGLRDCLSLDGDVVFVEAAENIADSYESVKETVYQRYGRDFINQEFIDAGLDTHVITKNIQELQKKSKLLGSPYFYLAMFTRLITSIVIDADRTDTACFEDKRALPQRRALDERKEMWKKYLVHYESQLEKLQEGKKTSSLDPYRGEISRACAEFDGGEAGIFRLVVPCGAGKTLAALRYALHTARRYGKERIFYIAPFNSILEQNATEIAKFIGDPDAVLEHHSNIIFSAEENKDKSEDEKRYQLLTENWAQSPVVATTAVQFLNTLFAGQTSCIRRMQALGNSVIILDEIQALPIKVLKLFNGAMNFLASFCKSSVVLCSATQPLLDRVDHYRILPPRSIIENEEKYNEAFRRVQIVNCMKEQGYSREEAADFIVSQLESTRSVLAIVNTKRSAREIFKHIQDKLGNETPYRIFHLSTNMCPAHRSRVLKHLRERLKDTDLGEKIICISTSLIEAGVDVSFERVVRSLTGLDSIVQAAGRCNRNYETSCGIVSIINLRDERTSGQGYLKEAQKATQELLYSIKISPEGYPEGALSKDAMEEYYARYFQPLLEEMAYRLKFDPEHTLLDLLTSNPSGQRGFEEKYPQERPPELKQAFKEAGGAFSVIDDDGKVDVFIEYDEEARKRLQKLREATTLQEKRTALRQLQPYTVQLRDNDWIKTQRTALAPEDGGILVLPPGYYDGEYGVDETLNIEMETLII
>NC_015589.1|WP_143758753.1|1423793_1424899_+|IS3-family-transposase
MRKRFTEEQIIGILNSHENGMPVADILRQHGISEQTFYRWKSKYGGMEASDAKKLKQLEEENRRLKLLVGELTLDNQALKWVIGKKQVKPARKRKLVKELQDTFGMSERRACRLVGIGRSSHRYVPSTSEENEALKTRISELAFKWRRFGYRRIHALLQREGQKVNHKKVYRLYRLAGLAVRRRKRKRVLSGRGRPPTVTPQPNVRWSMDFVSDSTATGQRFRVFVVIDEATRECLASEVDTSITGRRVTRVLDRIAIYRGYPKEILSDNGPEFAGLTLNQWAYEHRVIQLFIDPGKPMQNSHVESFNGKLRDECLNEHWFRGVSEARRIIEEWRHEYNTVRPHSGLSNKTPVEYATDLAKKTCEQIS
>NC_015589.1|WP_013841444.1|1420812_1420968_-|hypothetical-protein
MKKYFSQKLIIILKEIKYNKKSEIKNLKVENAKLMRLIVDQALDIQALRRY
>NC_015589.1|WP_013841443.1|1419024_1419894_+|alpha/beta-hydrolase
MEERTFNTKQVNLNYVEKGVSDISILLLHGGSSRWQTFRDIIDDLSVHFHVYAIDLRGHGKSGRTENKYKMQDYVPDVREFIEKCIKKPTIIIGHSLGGMIAILIAAYYPSIVKALIIGDSPVSLDVLRSHSESQKDMTMLWREWSKNLSLDEIVEKLKAMQVPVPEREGTVSAAEAYGENHPWFEFMAENLKQNDPNMLSAIIDDFDNTYEEYDVERLFPLIKCPILIVKGDSGQGSLIRDTDIGFIKKLNNDVKHVEIKGVGHALYMQDKQSFIDAILPFINKNAQN
>NC_015589.1|WP_013841453.1|1439793_1440141_+|hypothetical-protein
MVDIDFILNILHPNRSEAYRRYFDLCKEIQVPQLPPEVSLPDEVHVGREGKQRESSTTNKLTWEEIIIKITRNNVEKEKLLSRCRERRIVAARNRLIYEAINQEVLSRRELAKIL
>NC_015589.1|WP_143758753.1|1440493_1441599_+|IS3-family-transposase
MRKRFTEEQIIGILNSHENGMPVADILRQHGISEQTFYRWKSKYGGMEASDAKKLKQLEEENRRLKLLVGELTLDNQALKWVIGKKQVKPARKRKLVKELQDTFGMSERRACRLVGIGRSSHRYVPSTSEENEALKTRISELAFKWRRFGYRRIHALLQREGQKVNHKKVYRLYRLAGLAVRRRKRKRVLSGRGRPPTVTPQPNVRWSMDFVSDSTATGQRFRVFVVIDEATRECLASEVDTSITGRRVTRVLDRIAIYRGYPKEILSDNGPEFAGLTLNQWAYEHRVIQLFIDPGKPMQNSHVESFNGKLRDECLNEHWFRGVSEARRIIEEWRHEYNTVRPHSGLSNKTPVEYATDLAKKTCEQIS
>NC_015589.1|WP_013841454.1|1441811_1442051_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MTSPEGKYAWTVKVGEKGQFVIPKEARTIFNIKPGDTLIVLADEKQGIAIPPPDMFTQLAKAIFPQNRPSANGGREEEE
>NC_015589.1|WP_041275648.1|1442050_1443121_+|acyltransferase-family-protein
MSGNTALPRKNYIDNIRSATIVLVLIYHVVYIFNSVGVVSNIPVQGIPALDSICYFLYPWFMCLLFVVAGISARYSLQTRSTRQFARERVQKLIVPYLGGAVLLGWLNGWVTAHYVDMFGGHAVPGFVKYLVYCLNIGPLWFLLELFVISMILLLILRIDRRDRLWALAGKTGLPLIILLVLAVWGSSFLLNPPVVVVFRNGIYWLMFLLGYYVFSHDTVLAKLKQHAILFFIIAVGLGVVEVWYFFGQNYTSDACLQHPLTNLYLWMMILAVLGCAQRWLDFSNSLTKYLQKRSFALYVFHYPLLVTAAYLITTYTELPMAAVYLVLLPFTFAAPILFYEITSRIPVIRYLLLGK
>NC_015589.1|WP_013841456.1|1443448_1443868_+|universal-stress-protein
MTKILIPVDGSAGSDKAVRFAISLAEGKDAELIVLNVQFNFTPNIKRFFSQEEIRSYQEELSKEVLDHTLEITNEYAIPVRTVVRIGDPGKEILEEAKESSVDFIVMGYRGLGPVKRTILGSVATHVLHATLSPVMIVP
>NC_015589.1|WP_013841457.1|1443967_1444843_+|transposase
MVRKPRVHYAGAIYHVIARGNNRENIFLDCCDKEKYLELVARYKKRYNCEILAYVLMDNHLHILIRIDQTPLSKVMQGIQQCYTQYFNQKYKHIGHVFQQRYKAFLCDNDSYLTALVVYIHQNPIRAKLPEGTDYLWSSHKDYTAGNSVLVDIDFILNMLHPNRREAYRKYFDLCREIQVPQAPPEVSLPDEVHIGREEDQRQSSTMNKLTWQEIVKKIIIENNIEKEKLLGRCRERKIVAARNMLIYEAINQEVLSRRELAKILQVDPARITRGFQKVEESIKNKSKNQA
>NC_015589.1|WP_013841458.1|1445028_1445784_-|SDR-family-oxidoreductase
MKIAIVTGGSNGIGKATALELGKRGIGVILTYNSYKDRAEAVVKEIEKNKRVRAVALKLDLTQTSTFEGFVLEVKKSLQEIWNRTTFDYLVNNGGVGGPMMFTEMSEEYFDKILNTNFKGPVFLTQHLVRFMDNAGAIVNTTSTAKNQSFPGYSAYGSLKAAFSSWTRYIAKELAPRRIRVNAVSPGPTHSNFGDGAFNKHPEFIQPLAEQSVFGRIGQPEDLAKVIVNLLSDDFGWVTAQDIEVSGGHLL
>NC_015589.1|WP_041275650.1|1446000_1446888_+|AraC-family-transcriptional-regulator
MNKVLDEVIDLMKKAGTRPIETGVPGLSMIKGDIPAHQLAAFYKPMIGFTVQGTKILSIGERSTTLKGPSYHVLPVHVPATARVHSDRDGRPYMALGLELNQNVLQSLLRDLPEDLIPTASEPFAACEIDMEFLEAWLRLLRLMKAPRDIPALAPAYEREILYRVLMGPQGWYLRQLGLRESNFSRISQTVKWLRDNYTRPIGIGEMASKSGMAINTFHRQFKRATGLSPIQFQKQLRLLEARNLIAFEGYAVASAAYQVGYQSPSQFNREYSRFFGSPPARDTEKLRRIESARD
>NC_015589.1|WP_187290620.1|1447291_1447432_+|hypothetical-protein
MARKPRVHYAGAIYHVIARGNNRENIFLDCCDKEKYLELVARYKKR
>NC_015589.1|WP_013841461.1|1448223_1449447_+|tyrosine--tRNA-ligase
MKIYDELVARGLIAQVTDEEEIKELINSGKATFYIGFDPTADSLHVGHFMALCLMKRLQMAGNKPVVLLGGGTGYIGDPSGRTDLRSMMTPETIQHNCDCFKKQMERFIEFGDDKAILVNNADWLLKLNYIELLRDVGAHFSVNNMLRAECYKQRMEKGLSFLELNYMIMQSYDFYYLFQNYGCNMQFGGDDQWSNMLGGTELIRRKLGKNAYAMTITLLMNSQGNKMGKTAKGAVWLDPSKTSPFEFFQYWRNIGDADVLKCIRMLTFLPLEQIDTMDKWEGSQLNDAKEILAYELTKLVHGDEEAKKAKKASHALFADGTDDSHMPTTEITAEHLRDGVIGILDLMVACGITSSKSEARRLIQQGGLFIDDVKVESIDCNITSEQLKNGVKIRKGKKTYHKALLK

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Crispr_ID: NC_015589_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_7

1800074-1803706

Orphan

Consensus_repeat	Method
GTTTCAAATCCTTATAGGTAGGCTAGTAAC	PILER-CR
GTTACTAGCCTACCTATAAGGATTTGAAAC	CRISPRCasFinder
GTTACTAGCCTACCTATAAGGATTTGAAAC	CRT

54 spacers

The CRISPR arrays of NC_015589_7

>merge|NC_015589|7|1800074-1803706|PILER-CR,CRISPRCasFinder,CRT
GTTACTAGCCTACCTATAAGGATTTGAAACGGGGGGTTAATGCCGATTATGACGAGAGCCAACCGGGTTACTAGCCTACCTATAAGGATTTGAAACCTAACAGACAGGCCAAGACAAAAACTATCGTTCGCAGGTTACTAGCCTACCTATAAGGATTTGAAACTATCTAGCGCACTGTATAAGGTCAACACTGCTGCTTTAGTTACTAGCCTACCTATAAGGATTTGAAACCCTTTACAGATGCAGCTAGCGAGTGGAAAGTAACCCTGTTACTAGCCTACCTATAAGGATTTGAAACAATTTAATAGCTTCCTTAATATATCAACTTGATTAGGTTACTAGCCTACCTATAAGGATTTGAAACAATTCTGCGATTTCATGGGCCAGACTGCCCTCTGCGTTACTAGCCTACCTATAAGGATTTGAAACTAGATATTTCGGTAAGTGTTTCATCTGTAGCATCGAGTTACTAGCCTACCTATAAGGATTTGAAACCTGCTGTAGCTGCTCCCCTTGCAGGTATCATAGCGAGTTACTAGCCTACCTATAAGGATTTGAAACTTGAAATATTCGGACACCGCTTCGATCAAAGGAAGGGCCAGTTACTAGCCTACCTATAAGGATTTGAAACTATTTTAATTATTAATATAATTAGTTAAATATTTTGTTACTAGCCTACCTATAAGGATTTGAAACTTCTTTGAGATATGACTGGATAAATCTGTAATCAACAACGTTACTAGCCTACCTATAAGGATTTGAAACCTCTTCGGTGTAAATTGTTGGCGTATAATCATCTGGACTGTTACTAGCCTACCTATAAGGATTTGAAACTGTCTTCTTCCTCTTCTTTAATGATGGCATTCAGCGTTACTAGCCTACCTATAAGGATTTGAAACACTGCTTGCTCCATGATGTATTCCTTAAGCCTTTTAGTTGTTACTAGCCTACCTATAAGGATTTGAAACCGGCGATGGCTCCAAGTGGCAGCAAATCTATAATGCGTTACTAGCCTACCTATAAGGATTTGAAACCAAAAAAGCACCGTGAAAAAGCTGATTGAGACCATAGTTACTAGCCTACCTATAAGGATTTGAAACTTGGAAAGAGAAAATAATCGTGGTATAGCAGGAATTTGGTTACTAGCCTACCTATAAGGATTTGAAACATATAGTTAGTGTATCCATCAATGGTGGTTTGAGCTAGTTACTAGCCTACCTATAAGGATTTGAAACGGTCTATGCTTCTCACAATACCCGCCGCCTCGAACGTTACTAGCCTACCTATAAGGATTTGAAACATGTTTTAAAGAAGGAGGTTGAACATGGTGACTAAGTTACTAGCCTACCTATAAGGATTTGAAACGAGACCCGGATCCCCTGCAATCGAAGGGCTTCCAGGTTACTAGCCTACCTATAAGGATTTGAAACATCACATTGCATGTATGGAGGTAAAACAAAATGGCTGAAAGTTACTAGCCTACCTATAAGGATTTGAAACTCGTAGGCATTGCCGCCTCGCGGTTCCTGGCGTAGACTGGTTACTAGCCTACCTATAAGGATTTGAAACCCGGCACACTCCACACATGGTTAGGATTATCGATCAAGTTACTAGCCTACCTATAAGGATTTGAAACTACCCCTCCTGTCGCCGGTTTCGTAACAGCAGCAGTTACTAGCCTACCTATAAGGATTTGAAACCTGCTATTGTATAACGGTTATTAGTGATTGTCAACAGTTACTAGCCTACCTATAAGGATTTGAAACATAGTATGCGTCGCGAAGATTTGGTTGGGGAATGGTATTTGTTACTAGCCTACCTATAAGGATTTGAAACATATCTTCAAACCGTTCATCCATTTGTTTCGCAGGTTACTAGCCTACCTATAAGGATTTGAAACCTCACCGACGCATTGGCCCACTGATCCGTGGCATCAGTTACTAGCCTACCTATAAGGATTTGAAACCAGGCTTGGTGACCTACTTGTTGGTGCTTGAACGAGTTACTAGCCTACCTATAAGGATTTGAAACTATATCGCATTGAGTACGGCGGAAAACTCCTTGGTATGTTACTAGCCTACCTATAAGGATTTGAAACTCAGATGGAGTTGTGAAAAGAACAGCTTAAATGTATAGGTTACTAGCCTACCTATAAGGATTTGAAACTCGCGGAGAGAGCCTTTTTGGGGGTTCGTAATCACGTTACTAGCCTACCTATAAGGATTTGAAACTTTTATCCGACTGGCGGGTTCCGGGCAGTCAGTCCGTTACTAGCCTACCTATAAGGATTTGAAACATCTTCGCGGTCTCCTCTTTTACCGCCCGTCCGTTGAGTTACTAGCCTACCTATAAGGATTTGAAACCAGAGCAACCTTACCAGTATCGATGTTCGACCCCACTGTTACTAGCCTACCTATAAGGATTTGAAACTTTGTACATTCATTTTAAAACCTCCTCTGATCTTTTCGTTACTAGCCTACCTATAAGGATTTGAAACTTGACATCCGCCGGCCAGGGAACTTGGTCACTGGTCCGTTACTAGCCTACCTATAAGGATTTGAAACACTTGGTCTTCATTCCATTTAAAAACAAGTATCCCGTGTTACTAGCCTACCTATAAGGATTTGAAACTTCATACATTTCTTTGTATCACCTCGCTCACTGCAAGTTACTAGCCTACCTATAAGGATTTGAAACCAAAAAGCAAAGTTGCTGTTATTGATTGTTTTAAGTTACTAGCCTACCTATAAGGATTTGAAACTACTTTGCCCCCGCCGCCTTAAAGTGAGTCAGCAGGGTTACTAGCCTACCTATAAGGATTTGAAACTTACTTTCGTTATGAATTTTTTCATGATTCACCATCTTTGTTACTAGCCTACCTATAAGGATTTGAAACCCATTTACTCACCTCCATGGCTGTGTTTCGTCATAACCCGTTACTAGCCTACCTATAAGGATTTGAAACTTGGCGCCACTTTCACATATTGGTGAGTCGATTGGCCGTTACTAGCCTACCTATAAGGATTTGAAACGATATGACAATCCACAATAGTTACAGTTAACTCCTGGTCCGTTACTAGCCTACCTATAAGGATTTGAAACTGGGGTCGGGGTCTAAAGAACCTGTCATAAAAGCCGTTACTAGCCTACCTATAAGGATTTGAAACATACTACCAATGAACAAGCCGAATCGTTGGCCTACGTTACTAGCCTACCTATAAGGATTTGAAACTCCTCGTTAAGCCGTTTATCGTCCAAGTCTATTTCATCAGTTACTAGCCTACCTATAAGGATTTGAAACCTCCCATTGCTCAGCGGAAAATATTAGACGCAGCGTTACTAGCCTACCTATAAGGATTTGAAACAGATGAATCAAAAAGACCTGGGGAAAGCCTTCCAATCCGTTACTAGCCTACCTATAAGGATTTGAAACTGGGAATGGGACGGTGATATAAGTGGCCAATACCAGTTACTAGCCTACCTATAAGGATTTGAAACTTGGCTTCTGTGCCGGCCTCCGTAGTTTTCGCGTTTAAGGTTACTAGCCTACCTATAAGGATTTGAAACTGATGGTCGCCCATCACGATTTGCATTACCCGCTCCGTTACTAGCCTACCTATAAGGAACAGTAAA

>NC_015589|7|7|1800074-1803640|PILER-CR
GTTACTAGCCTACCTATAAGGATTTGAAAC	GGGGGGTTAATGCCGATTATGACGAGAGCCAACCGG
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTAACAGACAGGCCAAGACAAAAACTATCGTTCGCAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TATCTAGCGCACTGTATAAGGTCAACACTGCTGCTTTA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CCTTTACAGATGCAGCTAGCGAGTGGAAAGTAACCCT
GTTACTAGCCTACCTATAAGGATTTGAAAC	AATTTAATAGCTTCCTTAATATATCAACTTGATTAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	AATTCTGCGATTTCATGGGCCAGACTGCCCTCTGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TAGATATTTCGGTAAGTGTTTCATCTGTAGCATCGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTGCTGTAGCTGCTCCCCTTGCAGGTATCATAGCGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGAAATATTCGGACACCGCTTCGATCAAAGGAAGGGCCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TATTTTAATTATTAATATAATTAGTTAAATATTTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTCTTTGAGATATGACTGGATAAATCTGTAATCAACAAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTCTTCGGTGTAAATTGTTGGCGTATAATCATCTGGACT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGTCTTCTTCCTCTTCTTTAATGATGGCATTCAGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ACTGCTTGCTCCATGATGTATTCCTTAAGCCTTTTAGTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	CGGCGATGGCTCCAAGTGGCAGCAAATCTATAATGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAAAAAAGCACCGTGAAAAAGCTGATTGAGACCATA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGGAAAGAGAAAATAATCGTGGTATAGCAGGAATTTG
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATATAGTTAGTGTATCCATCAATGGTGGTTTGAGCTA
GTTACTAGCCTACCTATAAGGATTTGAAAC	GGTCTATGCTTCTCACAATACCCGCCGCCTCGAAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATGTTTTAAAGAAGGAGGTTGAACATGGTGACTAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	GAGACCCGGATCCCCTGCAATCGAAGGGCTTCCAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATCACATTGCATGTATGGAGGTAAAACAAAATGGCTGAAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCGTAGGCATTGCCGCCTCGCGGTTCCTGGCGTAGACTG
GTTACTAGCCTACCTATAAGGATTTGAAAC	CCGGCACACTCCACACATGGTTAGGATTATCGATCAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TACCCCTCCTGTCGCCGGTTTCGTAACAGCAGCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTGCTATTGTATAACGGTTATTAGTGATTGTCAACA
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATAGTATGCGTCGCGAAGATTTGGTTGGGGAATGGTATTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATATCTTCAAACCGTTCATCCATTTGTTTCGCAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTCACCGACGCATTGGCCCACTGATCCGTGGCATCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAGGCTTGGTGACCTACTTGTTGGTGCTTGAACGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TATATCGCATTGAGTACGGCGGAAAACTCCTTGGTAT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCAGATGGAGTTGTGAAAAGAACAGCTTAAATGTATAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCGCGGAGAGAGCCTTTTTGGGGGTTCGTAATCAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTTTATCCGACTGGCGGGTTCCGGGCAGTCAGTCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATCTTCGCGGTCTCCTCTTTTACCGCCCGTCCGTTGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAGAGCAACCTTACCAGTATCGATGTTCGACCCCACT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTTGTACATTCATTTTAAAACCTCCTCTGATCTTTTC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGACATCCGCCGGCCAGGGAACTTGGTCACTGGTCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ACTTGGTCTTCATTCCATTTAAAAACAAGTATCCCGT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTCATACATTTCTTTGTATCACCTCGCTCACTGCAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAAAAAGCAAAGTTGCTGTTATTGATTGTTTTAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TACTTTGCCCCCGCCGCCTTAAAGTGAGTCAGCAGG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTACTTTCGTTATGAATTTTTTCATGATTCACCATCTTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	CCATTTACTCACCTCCATGGCTGTGTTTCGTCATAACCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGGCGCCACTTTCACATATTGGTGAGTCGATTGGCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	GATATGACAATCCACAATAGTTACAGTTAACTCCTGGTCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGGGGTCGGGGTCTAAAGAACCTGTCATAAAAGCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATACTACCAATGAACAAGCCGAATCGTTGGCCTAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCCTCGTTAAGCCGTTTATCGTCCAAGTCTATTTCATCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTCCCATTGCTCAGCGGAAAATATTAGACGCAGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	AGATGAATCAAAAAGACCTGGGGAAAGCCTTCCAATCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGGGAATGGGACGGTGATATAAGTGGCCAATACCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGGCTTCTGTGCCGGCCTCCGTAGTTTTCGCGTTTAAG
GTTACTAGCCTACCTATAAGGATTTGAAAC

>NC_015589|7|7|1800074-1803706|CRISPRCasFinder
GTTACTAGCCTACCTATAAGGATTTGAAAC	GGGGGGTTAATGCCGATTATGACGAGAGCCAACCGG
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTAACAGACAGGCCAAGACAAAAACTATCGTTCGCAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TATCTAGCGCACTGTATAAGGTCAACACTGCTGCTTTA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CCTTTACAGATGCAGCTAGCGAGTGGAAAGTAACCCT
GTTACTAGCCTACCTATAAGGATTTGAAAC	AATTTAATAGCTTCCTTAATATATCAACTTGATTAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	AATTCTGCGATTTCATGGGCCAGACTGCCCTCTGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TAGATATTTCGGTAAGTGTTTCATCTGTAGCATCGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTGCTGTAGCTGCTCCCCTTGCAGGTATCATAGCGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGAAATATTCGGACACCGCTTCGATCAAAGGAAGGGCCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TATTTTAATTATTAATATAATTAGTTAAATATTTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTCTTTGAGATATGACTGGATAAATCTGTAATCAACAAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTCTTCGGTGTAAATTGTTGGCGTATAATCATCTGGACT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGTCTTCTTCCTCTTCTTTAATGATGGCATTCAGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ACTGCTTGCTCCATGATGTATTCCTTAAGCCTTTTAGTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	CGGCGATGGCTCCAAGTGGCAGCAAATCTATAATGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAAAAAAGCACCGTGAAAAAGCTGATTGAGACCATA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGGAAAGAGAAAATAATCGTGGTATAGCAGGAATTTG
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATATAGTTAGTGTATCCATCAATGGTGGTTTGAGCTA
GTTACTAGCCTACCTATAAGGATTTGAAAC	GGTCTATGCTTCTCACAATACCCGCCGCCTCGAAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATGTTTTAAAGAAGGAGGTTGAACATGGTGACTAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	GAGACCCGGATCCCCTGCAATCGAAGGGCTTCCAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATCACATTGCATGTATGGAGGTAAAACAAAATGGCTGAAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCGTAGGCATTGCCGCCTCGCGGTTCCTGGCGTAGACTG
GTTACTAGCCTACCTATAAGGATTTGAAAC	CCGGCACACTCCACACATGGTTAGGATTATCGATCAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TACCCCTCCTGTCGCCGGTTTCGTAACAGCAGCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTGCTATTGTATAACGGTTATTAGTGATTGTCAACA
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATAGTATGCGTCGCGAAGATTTGGTTGGGGAATGGTATTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATATCTTCAAACCGTTCATCCATTTGTTTCGCAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTCACCGACGCATTGGCCCACTGATCCGTGGCATCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAGGCTTGGTGACCTACTTGTTGGTGCTTGAACGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TATATCGCATTGAGTACGGCGGAAAACTCCTTGGTAT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCAGATGGAGTTGTGAAAAGAACAGCTTAAATGTATAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCGCGGAGAGAGCCTTTTTGGGGGTTCGTAATCAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTTTATCCGACTGGCGGGTTCCGGGCAGTCAGTCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATCTTCGCGGTCTCCTCTTTTACCGCCCGTCCGTTGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAGAGCAACCTTACCAGTATCGATGTTCGACCCCACT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTTGTACATTCATTTTAAAACCTCCTCTGATCTTTTC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGACATCCGCCGGCCAGGGAACTTGGTCACTGGTCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ACTTGGTCTTCATTCCATTTAAAAACAAGTATCCCGT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTCATACATTTCTTTGTATCACCTCGCTCACTGCAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAAAAAGCAAAGTTGCTGTTATTGATTGTTTTAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TACTTTGCCCCCGCCGCCTTAAAGTGAGTCAGCAGG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTACTTTCGTTATGAATTTTTTCATGATTCACCATCTTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	CCATTTACTCACCTCCATGGCTGTGTTTCGTCATAACCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGGCGCCACTTTCACATATTGGTGAGTCGATTGGCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	GATATGACAATCCACAATAGTTACAGTTAACTCCTGGTCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGGGGTCGGGGTCTAAAGAACCTGTCATAAAAGCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATACTACCAATGAACAAGCCGAATCGTTGGCCTAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCCTCGTTAAGCCGTTTATCGTCCAAGTCTATTTCATCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTCCCATTGCTCAGCGGAAAATATTAGACGCAGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	AGATGAATCAAAAAGACCTGGGGAAAGCCTTCCAATCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGGGAATGGGACGGTGATATAAGTGGCCAATACCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGGCTTCTGTGCCGGCCTCCGTAGTTTTCGCGTTTAAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGATGGTCGCCCATCACGATTTGCATTACCCGCTCC
GTTACTAGCCTACCTATAAGGAACAGTAAA

>NC_015589|7|6|1800074-1803706|CRT
GTTACTAGCCTACCTATAAGGATTTGAAAC	GGGGGGTTAATGCCGATTATGACGAGAGCCAACCGG
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTAACAGACAGGCCAAGACAAAAACTATCGTTCGCAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TATCTAGCGCACTGTATAAGGTCAACACTGCTGCTTTA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CCTTTACAGATGCAGCTAGCGAGTGGAAAGTAACCCT
GTTACTAGCCTACCTATAAGGATTTGAAAC	AATTTAATAGCTTCCTTAATATATCAACTTGATTAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	AATTCTGCGATTTCATGGGCCAGACTGCCCTCTGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TAGATATTTCGGTAAGTGTTTCATCTGTAGCATCGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTGCTGTAGCTGCTCCCCTTGCAGGTATCATAGCGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGAAATATTCGGACACCGCTTCGATCAAAGGAAGGGCCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TATTTTAATTATTAATATAATTAGTTAAATATTTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTCTTTGAGATATGACTGGATAAATCTGTAATCAACAAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTCTTCGGTGTAAATTGTTGGCGTATAATCATCTGGACT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGTCTTCTTCCTCTTCTTTAATGATGGCATTCAGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ACTGCTTGCTCCATGATGTATTCCTTAAGCCTTTTAGTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	CGGCGATGGCTCCAAGTGGCAGCAAATCTATAATGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAAAAAAGCACCGTGAAAAAGCTGATTGAGACCATA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGGAAAGAGAAAATAATCGTGGTATAGCAGGAATTTG
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATATAGTTAGTGTATCCATCAATGGTGGTTTGAGCTA
GTTACTAGCCTACCTATAAGGATTTGAAAC	GGTCTATGCTTCTCACAATACCCGCCGCCTCGAAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATGTTTTAAAGAAGGAGGTTGAACATGGTGACTAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	GAGACCCGGATCCCCTGCAATCGAAGGGCTTCCAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATCACATTGCATGTATGGAGGTAAAACAAAATGGCTGAAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCGTAGGCATTGCCGCCTCGCGGTTCCTGGCGTAGACTG
GTTACTAGCCTACCTATAAGGATTTGAAAC	CCGGCACACTCCACACATGGTTAGGATTATCGATCAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TACCCCTCCTGTCGCCGGTTTCGTAACAGCAGCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTGCTATTGTATAACGGTTATTAGTGATTGTCAACA
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATAGTATGCGTCGCGAAGATTTGGTTGGGGAATGGTATTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATATCTTCAAACCGTTCATCCATTTGTTTCGCAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTCACCGACGCATTGGCCCACTGATCCGTGGCATCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAGGCTTGGTGACCTACTTGTTGGTGCTTGAACGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TATATCGCATTGAGTACGGCGGAAAACTCCTTGGTAT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCAGATGGAGTTGTGAAAAGAACAGCTTAAATGTATAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCGCGGAGAGAGCCTTTTTGGGGGTTCGTAATCAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTTTATCCGACTGGCGGGTTCCGGGCAGTCAGTCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATCTTCGCGGTCTCCTCTTTTACCGCCCGTCCGTTGA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAGAGCAACCTTACCAGTATCGATGTTCGACCCCACT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTTGTACATTCATTTTAAAACCTCCTCTGATCTTTTC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGACATCCGCCGGCCAGGGAACTTGGTCACTGGTCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ACTTGGTCTTCATTCCATTTAAAAACAAGTATCCCGT
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTCATACATTTCTTTGTATCACCTCGCTCACTGCAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CAAAAAGCAAAGTTGCTGTTATTGATTGTTTTAA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TACTTTGCCCCCGCCGCCTTAAAGTGAGTCAGCAGG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTACTTTCGTTATGAATTTTTTCATGATTCACCATCTTT
GTTACTAGCCTACCTATAAGGATTTGAAAC	CCATTTACTCACCTCCATGGCTGTGTTTCGTCATAACCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGGCGCCACTTTCACATATTGGTGAGTCGATTGGCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	GATATGACAATCCACAATAGTTACAGTTAACTCCTGGTCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGGGGTCGGGGTCTAAAGAACCTGTCATAAAAGCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	ATACTACCAATGAACAAGCCGAATCGTTGGCCTAC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TCCTCGTTAAGCCGTTTATCGTCCAAGTCTATTTCATCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	CTCCCATTGCTCAGCGGAAAATATTAGACGCAGC
GTTACTAGCCTACCTATAAGGATTTGAAAC	AGATGAATCAAAAAGACCTGGGGAAAGCCTTCCAATCC
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGGGAATGGGACGGTGATATAAGTGGCCAATACCA
GTTACTAGCCTACCTATAAGGATTTGAAAC	TTGGCTTCTGTGCCGGCCTCCGTAGTTTTCGCGTTTAAG
GTTACTAGCCTACCTATAAGGATTTGAAAC	TGATGGTCGCCCATCACGATTTGCATTACCCGCTCC
GTTACTAGCCTACCTATAAGGAACAGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013841812.1\|1805729_1806680_+\|sporulation-protein	unknown	unknown	gnl\|CDD\|369195
NC_015589.1\|WP_013841808.1\|1798137_1798329_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_049786795.1\|1810975_1811578_+\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|376358
NC_015589.1\|WP_013841819.1\|1813076_1814252_+\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NC_015589.1\|WP_013841815.1\|1808598_1809651_+\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235578
NC_015589.1\|WP_013841807.1\|1795845_1797933_-\|Mu-transposase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378147
NC_015589.1\|WP_013841814.1\|1807801_1808593_+\|S-methyl-5'-thioadenosine-phosphorylase	unknown	unknown	gnl\|CDD\|169548
NC_015589.1\|WP_041275360.1\|1805244_1805694_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133406
NC_015589.1\|WP_013841810.1\|1803752_1805060_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NC_015589.1\|WP_013841804.1\|1793834_1794206_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_049786747.1\|1792340_1792727_-\|3D-domain-containing-protein	unknown	unknown	gnl\|CDD\|270620
NC_015589.1\|WP_013841801.1\|1792084_1792318_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841803.1\|1793428_1793818_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841806.1\|1794852_1795827_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225398
NC_015589.1\|WP_013841809.1\|1798514_1799399_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|234688
NC_015589.1\|WP_041275361.1\|1811653_1812955_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|238623
NC_015589.1\|WP_013841805.1\|1794336_1794840_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013841816.1\|1809652_1810909_+\|adenosylhomocysteinase	unknown	unknown	gnl\|CDD\|235488
NC_015589.1\|WP_013841802.1\|1792731_1793526_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NC_015589.1\|WP_041275699.1\|1806709_1807558_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|320695

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013841812.1\|1805729_1806680_+\|sporulation-protein	gnl\|CDD\|369195	pfam07070, Spo0M, SpoOM protein. This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH.	2.37492e-55
NC_015589.1\|WP_013841819.1\|1813076_1814252_+\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	1.29218e-140
NC_015589.1\|WP_013841815.1\|1808598_1809651_+\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|235578	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.	0
NC_015589.1\|WP_013841802.1\|1792731_1793526_-\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	4.94903e-43
NC_015589.1\|WP_013841814.1\|1807801_1808593_+\|S-methyl-5'-thioadenosine-phosphorylase	gnl\|CDD\|169548	PRK08666, PRK08666, 5'-methylthioadenosine phosphorylase; Validated.	1.51044e-179
NC_015589.1\|WP_041275360.1\|1805244_1805694_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133406	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	2.28361e-42
NC_015589.1\|WP_013841810.1\|1803752_1805060_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	6.58499e-145
NC_015589.1\|WP_049786747.1\|1792340_1792727_-\|3D-domain-containing-protein	gnl\|CDD\|270620	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues. This family contains the 3D domain, named for its 3 conserved aspartates, including similar uncharacterized proteins. These proteins contain the critical active site aspartate of mltA-like lytic transglycosylases where the 3D domain forms a larger domain with the N-terminal region. This domain is also found in conjunction with numerous other domains such as the Escherichia coli MltA, a membrane-bound lytic transglycosylase comprised of 2 domains separated by a large groove, where the peptidoglycan strand binds. Domain A is made up of an N-terminal and a C-terminal portion, corresponding to the 3D domain and Domain B is inserted within the linear sequence of domain A. MltA is distinct from other bacterial LTs, which are similar to each other. Escherichia coli peptidoglycan lytic transglycosylase (LT) initiates cell wall recycling in response to damage, during bacterial fission, and cleaves peptidoglycan (PG) to create functional spaces in its wall. PG chains (also known as murein), the major components of the bacterial cell wall, are comprised of alternating beta-1-4-linked N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), and lytic transglycosylases cleave this beta-1-4 bond.	2.17046e-34
NC_015589.1\|WP_013841806.1\|1794852_1795827_-\|AAA-family-ATPase	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	8.7624e-17
NC_015589.1\|WP_013841809.1\|1798514_1799399_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	2.75363e-31
NC_015589.1\|WP_041275361.1\|1811653_1812955_+\|amidohydrolase	gnl\|CDD\|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	0
NC_015589.1\|WP_041275699.1\|1806709_1807558_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|320695	cd07336, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	1.96482e-155
NC_015589.1\|WP_013841816.1\|1809652_1810909_+\|adenosylhomocysteinase	gnl\|CDD\|235488	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional.	0
NC_015589.1\|WP_013841807.1\|1795845_1797933_-\|Mu-transposase-C-terminal-domain-containing-protein	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	4.35596e-14
NC_015589.1\|WP_049786795.1\|1810975_1811578_+\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|376358	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain. This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.	1.27238e-58

>NC_015589.1|WP_013841809.1|1798514_1799399_+|helix-turn-helix-domain-containing-protein
METISDRIEKTIEDNGLTKTQFAKIIGISTGNLGDWKRGKSMPGANALAKIAEHFDVSLDWLILGKKIEKLEQIPGRVSRISEGEEDRLEFRESGSNSELLKYLKDLSEEDINVLTLVAKRLSGKGSRTSIKTNTPRVKLKKEPETSKSNVCYLPVLSQIPAGRPVSTEDLIEGYLPVPVHMAKSGTFLTRVRGDSMIGDEIFDGDVVQIRMQPTVENGEIAAVRLNGEVTLKHFFNNNGSFILRSSNPEYSDIIANIDDDITIIGKFIAKFSKQDVDVLLDRFREDGAFFNTI
>NC_015589.1|WP_013841808.1|1798137_1798329_-|hypothetical-protein
MGRRKLTPFGLEVKKKLLDMGVTAKEFCEENKIPAKKFSDLLTGDRKTEKYIQIIREKLKISA
>NC_015589.1|WP_013841807.1|1795845_1797933_-|Mu-transposase-C-terminal-domain-containing-protein
MGEIYISTTKAAKLEGISRQMAHKKASAGDWIVKIAKIGKGGKSGMGFLIALSSLSSVARQRYCQNTIQEVKENQELAEVVELHPPVPVAPLNLAEIEAKIGKIRFEKILADADEKAAICEEALDVPDGSKKTQHRELVAAKYGISTRTLYGYIKEYQEGGRTALIRKLNGLGRETTRRTVSEELERVIRSLYLQPNKPKVSHVYDKVKKLLERESLEVPSRATIYRVVEDLNKYEPDLVCLAREGPEAYMKKFAIKATRSEPQFMNEVWEGDHHRLDVFIKYNGRPVRPWMTAWLDVATRTIIGYALSIQANGRTIALAMRHGILPKVRSGWEKPVFSKPMAKSIGDLGWGEEELLADVGETLPIFGVPKTIYIDNGEDYKSQVKKQKKSNDFEYSRQTRSVCDLLNINPMFATPYAPYAKGHMERWFGTFTDRFARYLPGYCGKDNKQRPYNLDEKKMAAQDMLLELDELNYLMEVYLHQYHNTVHSSLGMTPLQKVAITPKVTKALPDARTLDICLMDNETAVIQTSGIEKFGSRGKRRWFHHPDLDKLVGQKVVIRYDPNRIGEILVFSPRSGKFLCTATNKELLAWGATRDDLTKFQKQRASLRKELREQLKGIRKVSLDSLIKERKQAGSHVLTGKVSEDTPQVQLMTGMEPVAKQRKKKATKETQDTGKTKPKKKTNIFDEMLLQAGS
>NC_015589.1|WP_013841806.1|1794852_1795827_-|AAA-family-ATPase
MSTATATVLAATWSKARTILNSLVKDEGTKVTDVAKALGKSHSTISLYINGKYPSNDKFEELVEGYLKSLGKWVEDQEEENVPESGYIVDISELGTIITDDYQRVRGVCRKSQERKEFGIVVGDPGAGKTRALEDYAKENQGVVMITCDETSSIKSVLTEITEGLHLEARGASATLLNKIVKELKRRPRLLIVDEADKVKLKVLETLRGIYDKAKNIGVVLCGNQPLAEKIILLAEDRPELARLRDRLGYYITTNGLTEPEAAKFLERVNLTASARKMMIDVAVNRGIRQLVKSLDRLLEVTAGERITDSMVTDVGRIYLGFNA
>NC_015589.1|WP_013841805.1|1794336_1794840_-|hypothetical-protein
MIVKVDIVTGKVIINRIRELWYRETCLSMTEAEYKCWLEQELIRQKGRMTAWMETADILDSANQGTPNPRRRKGNPIPPELLQYLIMEIEFGTSPRALAQKTGIMTGTIHRIYRQLSKYRKFLEAYRLDDLGIDIDTIIAKTGLTSGTVKTLLGKRNALLQTNKLVS
>NC_015589.1|WP_013841804.1|1793834_1794206_-|hypothetical-protein
MPEASLSPELNNKFLQALASAKVKNLTDIGKITLQVIGYFDSMNLQRVTALVNLAGAVRQHLDSQQRVNLYEALLQYEKLACRFYQDGICSEGTCASGNFCCFDCERKAACEDPCPRPCVGYD
>NC_015589.1|WP_013841803.1|1793428_1793818_-|hypothetical-protein
MTETKSKKGFNEDEKALVEYLKNKLKEANVLKFPQDWHLKQLSTARRMLAGENAPSLSEWMACIDWAYLNPYWKDKVDHLARIMSLWPKFRLQGGENIGISSQYNKNSIQRGSYGNRGERYANEGPLPF
>NC_015589.1|WP_013841802.1|1792731_1793526_-|ATP-binding-protein
MELAANIIKTQFKGVPTVTGGNATPTKDPCPFNRCDGSGLISFKKNGLDFMEHCECLEVKNKIRKIGELFDRAGIPKKYAAKTLDQYSPRNELQHRALEIARRYVEKYQEIKETEKNGLYFVGPTGTGKTHLAYAIVNALIERYQIPAVVSVVPDLLDLLRPKRENNEAENRLELAKSNELLLLDDFGSERESSWVTERMFVIVNARCERQLPTIITSNVPLDLLEKDVHGRTVLAWERITSKIRDMCYQILMDGEDFRRLSAR
>NC_015589.1|WP_049786747.1|1792340_1792727_-|3D-domain-containing-protein
MRKLVIFVALAAVLYSPAEKTFTEDGPPFPIQQVSRGKDKTILLMEATAYCYTGRRTASGTWPSEERTIAADPAILPLGTKVYIDGFGCRIVEDTGKDIKGNRIDVYIKSHAAAVKFGRQNLNVTVLE
>NC_015589.1|WP_013841801.1|1792084_1792318_-|hypothetical-protein
MEQLSLYPLTGQEQVDYLYWSIHKTLDRERGNRKFVFRNDPIKMGKKLREIDEAMEALRILHRWASEGVKNRGDSGR
>NC_015589.1|WP_013841810.1|1803752_1805060_-|HlyC/CorC-family-transporter
MILINLLLMVLLIAATAFFVAAEFAIVKVRDSRIEQLIQEGNKRAEAVRKVIHNLDGYLSACQLGITLTALGLGWIGEPAVSDVIEPLIHYLGLPAAVTEGLSFVIGFSVITFLHVVIGELAPKTLAIQLAEKVTLAISPILIRFYKIMYPAIWLLNGSARFIIKLMGLHAVSEHQQIHSEEEIRMILLQSHQGGEINQTELQLARNSLHFADRVAREIMVPRTDMVCLYTHLSWEENLKIITEEKYARYPVCDGDKDCIIGFVNTKDLCFSGLTDLNKLNLEGLLKQSLRKVMIATELTPIDQILKKMQKNRLQLAIVQDEYGGTAGLLTIEDILEEIVGEIQDEYDEERQLIEPLGQGRYSVDARIPIADFNLEFDLNLEAKGVFTLGGWFLEESHRRPEKGQTAQYKNLKFTISEMEQNTIRRIELTYPPKE
>NC_015589.1|WP_041275360.1|1805244_1805694_+|MerR-family-transcriptional-regulator
MKLYKIGELAELAGVSKRTIDYYTNLSLLKPVRSESNYRYYHQDSLLRLKLIEGMKKQRFTLDEIKERMSVLDQSFLSGETGKNKPASIDVNFLKEQFKQLEIQLAQLQPVMSGMDAKQAALVTRQALMQSLAVIQSLLLYLNETAPFI
>NC_015589.1|WP_013841812.1|1805729_1806680_+|sporulation-protein
MLKKLMVRFGVGAAKVNLVLEKEQYRIGEAVTGKVVVEGGTVDQEIHALEVDVVLKVNIRGKEFTRVVETLPVARDFRIEAGETREIPFQHPITMQYPVSKGSVAYSLVTKMDIAQAKDAGDADRFAVLPGREMSLVFSALQILGFKEKISSGKVGQYGQEFEFYPSEQFFEQLREVKLKFHTQGDELKLFLELLLAGGVKSVTHHAELALPSEMLSNDHEQPLADTIKEFLEGQLRQVSLQGPRMAPSYQGYPGAAPGSPFGGFMGGMVAGMLGGAVLGELFGGDENEEAGAEAEGDEGFDLGFGDMMDFGDDEF
>NC_015589.1|WP_041275699.1|1806709_1807558_+|zinc-metalloprotease-HtpX
MNTMKVWLLMGGLSILLVLMGNAIGGSSGAMLFFLIAMGMNFFTYFYSDKMAIKMTRSYPVSEAEAPELYAMVKNLSRRAGLPMPKLYIQPSDQPNAFATGRNPAHSAVAVTEGILRLLSPKELEGVLAHELAHIKNRDVLVGTIAAALAGAISMMGSALQWGAIFGMGRSDDEEGGGGMLGGLVMAIIFPIAAMIIQMAISRSREYMADATGAQIAGSPEGLSNALLKLESAAHRLPPMEVNPATSHLFIMNPLSGASMARLFSTHPPIAERVEKLRAMRR
>NC_015589.1|WP_013841814.1|1807801_1808593_+|S-methyl-5'-thioadenosine-phosphorylase
MSVRIAIIGGTGVYDPNILTGIRDEKVSTPYGDVGLKIGDYQGKSVAFLNRHGAGHSVPPHLVNYRANIAALKELGVKSIFATAAVGSLNEKMAPGHFVFADQFLDFTKVRKHTFFEGGEQGVVHTDVTDPYCPELRQVLAQAAGEFGLHYHNGGIYVTTEGPRFETPAEIKMLKLLGGDLVGMTSVPEVVLAREKEMCYVNISMVTNFAAGISPTKLTHQEVLEVMAENAENLRKLAMKAIALIDPERGCLCQGALEKLNKE
>NC_015589.1|WP_013841815.1|1808598_1809651_+|S-methyl-5-thioribose-1-phosphate-isomerase
MDAIIWEGNRLRLLDQTKLPGTIEYIECNDYYTVAEAIKRLSVRGAPAIGAAAAYGLVVGAGQIQTEDPKVFLEKLESIAGELGATRPTAVNLRWALDRMMLRLSSAGEKSVQELRDILLEEAHAIYNEDVESNRRMGEYGQQLFPDEVRVLTHCNAGALATAGYGTALGVIRAAHERGKKVSVYADETRPLLQGARLTSWEMVQEGIPVTLITDNMAGYLMSQKMVDCVIVGADRITANGDVANKIGTYGVAVLAKYHQIPFYVAAPLSTIDMNLSSGEQIPIEERDAREVTHHAGQVVAPDGVKAWNPAFDVTPNGLVTAIITEKGVVQPPYTENLKKIFRDKKQEEV
>NC_015589.1|WP_013841816.1|1809652_1810909_+|adenosylhomocysteinase
MPDYIVRDIQMAPAGRLKIDWVRQHMPVLNAIREEFEREQPFKGVRVAVCIHLEAKTAYLAEVLKAGGAQVSISGSNPLSTQDDVAAALAAAGLNVYSWYNASEEEYKDHLLHLIDDQPDIVIDDGGDVVQLLHTERTELASRVLGGCEETTTGVLRLRSLERQGQLRFPMIAVNDAYCKYLFDNRYGTGESVWSGIMRTTNLITAGKTVVVAGYGWCGKGIAMRARGLGAKVIVTEVDPVKAIEAYMDGFHPMNSLEAAKMGDIFITVTGCKDVFTGKHYPHMKDGAILCNAGHFDVEVNKKDLAELSVSRRIVRKDIEEFVLQDGRKIYLLAEGRLVNLAAGDGHPAEIMDMSFALQALSARYVLENSGRLEKKVFVVPKEIDDRVADLKLKSLGVQIDSLTAEQEAYINDWNHTT
>NC_015589.1|WP_049786795.1|1810975_1811578_+|class-II-aldolase/adducin-family-protein
MYQSGLVAGTWGNLSLLVREEKAVVITPSGMDYTAVQPSDMVVLELDGQVIGGHRRPSSEARVHLAIYRARADIGGVVHTHSEVASAFAVLRKRIDPVVEDAAMLVAGAVEVAEYALPGSEQLGHNVAAALGDRYAVLMANHGLVGVGRTLEEAFTVCQVVEKNARILAWAQALGQPFVIPEQDVAELSRAYRQSYGQPK
>NC_015589.1|WP_041275361.1|1811653_1812955_+|amidohydrolase
MSKLLIRGATILTMEGPDAIIETGEILMEDGWITHVGLPGSAPGYFDMDEVIEADGEVAMPGFVNCHTHAAMTLLRGYADDMSLMPWLSEKIWPFEDRLTGEDVYWGTMLACLEMIKSGTTCFGDMYFFMDHVARAVEKSGIRAVLARGMVGVAPTGAAALTESEELVKNWNGKADGRITAMLGPHAPYTCPPDYLGKVMDLAAKLKVGVHIHVAETRTEYDDMLKQYGKTPVQHLDSLGLFKLPVLAAHCVHLDQEDMEILAQKAMGIAYNPQSNMKLASGIAPMAKLLDLGATVGIGTDGTSSNNNLDMLEELRAGSYLQKVGTMNPEVLPAYRTLQMATIDGALCMGLGDRVGLIKEGMRGDIILVDIKQPHMCPQHNLVANLAYAANCGDVRTVIIDGKLVMLDGAVLTMDEEKVMAEAQERAMRLAGK
>NC_015589.1|WP_013841819.1|1813076_1814252_+|class-I-SAM-dependent-rRNA-methyltransferase
MAKAILHEGKQKRILGGHPWIYRTEIKEIRGEFQPGDIVEVYDIRERLIGRGYINPASQISIRIMTRNAEEEINEDFFRRRIQAAWDYRQRVVRESNACRVIFGEADFLPGLIVDKFGDYLAVQTLTLGIEKHKETILKLLQEILKPGGMYERNDVAVRELEGLPLQTGFIGASFDPKVVIKENGLRFVVDLAGGQKTGYFLDQRENRMALQGLVHGGRVLDCFCHTGTFSMYAAKFGAREVLGLDIAAPALEVARANAELNGYGKNCSFKETNSFDELRAMEKAGEKFEVVVLDPPAFTKSKKAVAGAVRGYKEINLRGMKLLPPGGYLVTCSCSYHMKEEMFLEVIAEAGRDAGRQLRLVELRRQAKDHPMLLASPETHYLKCVVLQVW

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Crispr_ID: NC_015589_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_8

2490237-2491527

Orphan

Consensus_repeat	Method
GTTTCAAATCCTTATAGGTAAGCTAAAAAC	PILER-CR
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CRISPRCasFinder
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CRT

19 spacers

The CRISPR arrays of NC_015589_8

>merge|NC_015589|8|2490237-2491527|PILER-CR,CRISPRCasFinder,CRT
GTTTTTAGCTTACCTATAAGGATTTGAAACTGCCATTTCTGTATCCCTAGAGGTTGACACTATGGCGGTTTTTAGCTTACCTATAAGGATTTGAAACAAGCGTCTATATGTCGTTCTCCAAAGTCTGAACTATGTTTTTAGCTTACCTATAAGGATTTGAAACAGAGATTTTTCAATCTCTTCCTCTGGTTCAAAAACTTGTTTTTAGCTTACCTATAAGGATTTGAAACTACTTTTTTGCAATTTCCTTGATTTCTATTACCGACGTTTTTAGCTTACCTATAAGGATTTGAAACGGAATGATCCCTCGTTCAGGATTTCAGGTTTTAGTGAGTTTTTAGCTTACCTATAAGGATTTGAAACCCACCTTCCAGTATAAATGATGTTTTTTATTTAAAAGAGTTTTTAGCTTACCTATAAGGATTTGAAACCGCATACTGCGAGAAGAAAAGAATCTAACCCTTGAGTTTTTAGCTTACCTATAAGGATTTGAAACCCGCTCAGCAGGCACTGGAACATAAATTAATTGACGAGGTTTTTAGCTTACCTATAAGGATTTGAAACTAAGCGCAAGAAAGACGGTAGCTATAGGCCTGTAGGGTTTTTAGCTTACCTATAAGGATTTGAAACTTCCATTATCCCAATTAATATCATCCCATTTAAGAGTTTTTAGCTTACCTATAAGGATTTGAAACTCTCACCCCCTCCATTTTCTTGAACACCGCCCCACAGTTTTTAGCTTACCTATAAGGATTTGAAACACCATTGGCTGATTTTGTCAATAACGCTTTGTTTGTGTTTTTAGCTTACCTATAAGGATTTGAAACCTAAACTTAGAAGGAGGTGTGGGAAATGACTAACTTGTTTTTAGCTTACCTATAAGGATTTGAAACATGTCCTGCTCAACTTTCACCCGCTGGCCATCATGGGTTTTTAGCTTACCTATAAGGATTTGAAACTTTGGAGGTGGTAGCTATGGGTTAGGTGAGAAAAAAGTTTTTAGCTTACCTATAAGGATTTGAAACCCCAAGGGTTAAAAGGAGAAAAAGAGATAAGGATTGGTTTTTAGCTTACCTATAAGGATTTGAAACGTAAAACAGGCCGGTGTGGGAGCGGTGGAAGCTGGAAGTTTTTAGCTTACCTATAAGGATTTGAAACAAAGGGGATGGCTATTACCGTGATCAGGAAAAGTAAGTTTTTAGCTTACCTATAAGGATTTGAAACTGAGGATCTAAAAGAACGACTGCAAATTTAGTCATTAGTTTTTAGCTTACCTATAAGGATTTATCAA

>NC_015589|8|8|2490237-2491460|PILER-CR
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TGCCATTTCTGTATCCCTAGAGGTTGACACTATGGCG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	AAGCGTCTATATGTCGTTCTCCAAAGTCTGAACTAT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	AGAGATTTTTCAATCTCTTCCTCTGGTTCAAAAACTT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TACTTTTTTGCAATTTCCTTGATTTCTATTACCGAC
GTTTTTAGCTTACCTATAAGGATTTGAAAC	GGAATGATCCCTCGTTCAGGATTTCAGGTTTTAGTGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CCACCTTCCAGTATAAATGATGTTTTTTATTTAAAAGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CGCATACTGCGAGAAGAAAAGAATCTAACCCTTGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CCGCTCAGCAGGCACTGGAACATAAATTAATTGACGAG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TAAGCGCAAGAAAGACGGTAGCTATAGGCCTGTAGG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TTCCATTATCCCAATTAATATCATCCCATTTAAGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TCTCACCCCCTCCATTTTCTTGAACACCGCCCCACA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	ACCATTGGCTGATTTTGTCAATAACGCTTTGTTTGT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CTAAACTTAGAAGGAGGTGTGGGAAATGACTAACTT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	ATGTCCTGCTCAACTTTCACCCGCTGGCCATCATGG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TTTGGAGGTGGTAGCTATGGGTTAGGTGAGAAAAAA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CCCAAGGGTTAAAAGGAGAAAAAGAGATAAGGATTG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	GTAAAACAGGCCGGTGTGGGAGCGGTGGAAGCTGGAA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	AAAGGGGATGGCTATTACCGTGATCAGGAAAAGTAA
GTTTTTAGCTTACCTATAAGGATTTGAAAC

>NC_015589|8|8|2490237-2491527|CRISPRCasFinder
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TGCCATTTCTGTATCCCTAGAGGTTGACACTATGGCG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	AAGCGTCTATATGTCGTTCTCCAAAGTCTGAACTAT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	AGAGATTTTTCAATCTCTTCCTCTGGTTCAAAAACTT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TACTTTTTTGCAATTTCCTTGATTTCTATTACCGAC
GTTTTTAGCTTACCTATAAGGATTTGAAAC	GGAATGATCCCTCGTTCAGGATTTCAGGTTTTAGTGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CCACCTTCCAGTATAAATGATGTTTTTTATTTAAAAGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CGCATACTGCGAGAAGAAAAGAATCTAACCCTTGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CCGCTCAGCAGGCACTGGAACATAAATTAATTGACGAG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TAAGCGCAAGAAAGACGGTAGCTATAGGCCTGTAGG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TTCCATTATCCCAATTAATATCATCCCATTTAAGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TCTCACCCCCTCCATTTTCTTGAACACCGCCCCACA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	ACCATTGGCTGATTTTGTCAATAACGCTTTGTTTGT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CTAAACTTAGAAGGAGGTGTGGGAAATGACTAACTT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	ATGTCCTGCTCAACTTTCACCCGCTGGCCATCATGG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TTTGGAGGTGGTAGCTATGGGTTAGGTGAGAAAAAA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CCCAAGGGTTAAAAGGAGAAAAAGAGATAAGGATTG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	GTAAAACAGGCCGGTGTGGGAGCGGTGGAAGCTGGAA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	AAAGGGGATGGCTATTACCGTGATCAGGAAAAGTAA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TGAGGATCTAAAAGAACGACTGCAAATTTAGTCATTA
GTTTTTAGCTTACCTATAAGGATTTATCAA

>NC_015589|8|7|2490237-2491527|CRT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TGCCATTTCTGTATCCCTAGAGGTTGACACTATGGCG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	AAGCGTCTATATGTCGTTCTCCAAAGTCTGAACTAT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	AGAGATTTTTCAATCTCTTCCTCTGGTTCAAAAACTT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TACTTTTTTGCAATTTCCTTGATTTCTATTACCGAC
GTTTTTAGCTTACCTATAAGGATTTGAAAC	GGAATGATCCCTCGTTCAGGATTTCAGGTTTTAGTGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CCACCTTCCAGTATAAATGATGTTTTTTATTTAAAAGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CGCATACTGCGAGAAGAAAAGAATCTAACCCTTGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CCGCTCAGCAGGCACTGGAACATAAATTAATTGACGAG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TAAGCGCAAGAAAGACGGTAGCTATAGGCCTGTAGG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TTCCATTATCCCAATTAATATCATCCCATTTAAGA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TCTCACCCCCTCCATTTTCTTGAACACCGCCCCACA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	ACCATTGGCTGATTTTGTCAATAACGCTTTGTTTGT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CTAAACTTAGAAGGAGGTGTGGGAAATGACTAACTT
GTTTTTAGCTTACCTATAAGGATTTGAAAC	ATGTCCTGCTCAACTTTCACCCGCTGGCCATCATGG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TTTGGAGGTGGTAGCTATGGGTTAGGTGAGAAAAAA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	CCCAAGGGTTAAAAGGAGAAAAAGAGATAAGGATTG
GTTTTTAGCTTACCTATAAGGATTTGAAAC	GTAAAACAGGCCGGTGTGGGAGCGGTGGAAGCTGGAA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	AAAGGGGATGGCTATTACCGTGATCAGGAAAAGTAA
GTTTTTAGCTTACCTATAAGGATTTGAAAC	TGAGGATCTAAAAGAACGACTGCAAATTTAGTCATTA
GTTTTTAGCTTACCTATAAGGATTTATCAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013842450.1\|2505327_2507871_-\|DUF3656-domain-containing-protein	unknown	unknown	gnl\|CDD\|223896
NC_015589.1\|WP_013842452.1\|2508890_2509463_-\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|376746
NC_015589.1\|WP_013842448.1\|2497835_2498609_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842447.1\|2497288_2497774_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842449.1\|2502965_2505317_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NC_015589.1\|WP_013842435.1\|2478239_2478653_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NC_015589.1\|WP_013842446.1\|2495922_2496144_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842437.1\|2480364_2482098_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|274323
NC_015589.1\|WP_013842442.1\|2486369_2486894_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842436.1\|2478625_2480368_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NC_015589.1\|WP_013842444.1\|2491600_2493133_+\|DUF5050-domain-containing-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842443.1\|2486911_2487598_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_143758782.1\|2475597_2477346_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_081462077.1\|2495623_2495743_+\|transposase	unknown	unknown	gnl\|CDD\|372671
NC_015589.1\|WP_013842445.1\|2493780_2494209_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|236715
NC_015589.1\|WP_013842451.1\|2507896_2508847_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223404
NC_015589.1\|WP_013842439.1\|2483217_2484606_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NC_015589.1\|WP_013842438.1\|2482222_2483227_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NC_015589.1\|WP_013842440.1\|2484742_2485153_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NC_015589.1\|WP_081462076.1\|2477588_2478044_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013842450.1\|2505327_2507871_-\|DUF3656-domain-containing-protein	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	2.71855e-122
NC_015589.1\|WP_013842452.1\|2508890_2509463_-\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|376746	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG). Methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA.	1.17593e-102
NC_015589.1\|WP_013842449.1\|2502965_2505317_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NC_015589.1\|WP_013842435.1\|2478239_2478653_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.70974e-52
NC_015589.1\|WP_013842437.1\|2480364_2482098_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|274323	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD.	0
NC_015589.1\|WP_081462077.1\|2495623_2495743_+\|transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	1.66399e-08
NC_015589.1\|WP_013842438.1\|2482222_2483227_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	3.90573e-114
NC_015589.1\|WP_013842445.1\|2493780_2494209_+\|N-acetyltransferase	gnl\|CDD\|236715	PRK10562, PRK10562, putative acetyltransferase; Provisional.	1.74215e-40
NC_015589.1\|WP_013842451.1\|2507896_2508847_-\|hypothetical-protein	gnl\|CDD\|223404	COG0327, COG0327, Uncharacterized conserved protein [Function unknown].	0.00134972
NC_015589.1\|WP_013842439.1\|2483217_2484606_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NC_015589.1\|WP_013842436.1\|2478625_2480368_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	4.4855e-165
NC_015589.1\|WP_013842440.1\|2484742_2485153_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	1.39123e-41
NC_015589.1\|WP_081462076.1\|2477588_2478044_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	1.44903e-39

>NC_015589.1|WP_013842443.1|2486911_2487598_+|hypothetical-protein
MKKIIMLVGLCLVLSISSFIYNGVFASSNDKKTQNADEINKSGEILSQNAKKYKEDLKNEKVIALIGEEKILYKEFALKKIMLESKAEIKKTKKPTNKDVFEELKEDKISIVMAKQMDVYPTEAEVKEYISNMRKAINESDNPEALTYFTQNYGISEDEYWNEWSEPLYKQSLINIKLGNALASKVPQEKGDSREEYNKKVKENYVKIKDTFKEQIKVDILDNDLGIT
>NC_015589.1|WP_013842442.1|2486369_2486894_+|hypothetical-protein
MIKKCKKSISITLFAIFALFSIQLGAYAATQYYDKGPVSYNPAIFTDYGLKNFPYKIYMHEATTPGSSSRNVFYHESYGTYFSNLYGGETTADGIAWMVEVTNSYYSGSTRKLAVNPWNWTTLSMYIPDGYLPFGGYYDPDVSVSLSNSYVEARTVVSGDKLWSSPSNNTIINF
>NC_015589.1|WP_013842440.1|2484742_2485153_-|Rrf2-family-transcriptional-regulator
MQFNQATDYAFRVVLYLASLPPGEIVSAQAIASREQIPMRFLQKIMRSLVKAGLILSHRGVAGGFSLAKAPGEISLLNVVEVMEGPVCINRCFVDEDYCTKNWAGHCPVHQALAGIQSTMIRELGRHNFADLANPK
>NC_015589.1|WP_013842439.1|2483217_2484606_-|cytochrome-ubiquinol-oxidase-subunit-I
MSELLLARWQFGITSVYHFLFVPLTLGLSILVAIMETMYVRTGNETYRKMTKFWGKLFLINFAMGVVTGIVQEFHFGMNWSGYSRFVGDIFGAPLAIEALLAFFLESTFLGLWIFGWDKLPKKLHALSIWMVAIGSNLSALWILIANSFMQEPVGYIIRNGRAEMTDFFALITNPHVFYQFPHTVFGGYVTAAFFVMGISAYHLLRKNHLDFFRRSFKIGLIFGVISVFAVTGVGHLQGQYLAESQPMKMAAAEAHWETANPAPLVLLASIDEKNRSNSFEVAIPGLQSFMIYNRFDGEVKGINELQAEAEAQYGPGNYIPPVTPVFWSFRIMVAAGSWLVLMALLSLYLWKTGRLETKPLVLKALIWTIPIPYIANSTGWYMAEVGRQPWIVYGLQRVEAAVSPSVSAGEILTTMIGFTLVYGVLAVVDLYLLLKFIKQGPSDTAAVGTVDSSAKGVSLWT
>NC_015589.1|WP_013842438.1|2482222_2483227_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MDLNILWFILVTVLFIGFFFLEGFDYGVGILLPFLGQDDTERRVIINSIGPVWDGNEVWLITAGGAAFAAFPAWYATLFSGFYMALFLILLALIVRGVAFEFRSSDENPRWRSFWDWMIFGGSLVSALLWGVAVTNLLQGVPIDAQMEYVGSFWDLLSPYTLAGGLTTLLVFTLHGALFLTLKTEGAMVERARGAAVKIGMLAIPVALLLAVLTYLQTDLFTKTGAAIAFVGTALFLVLAWLLLRRGRYGWSFVSSGLTIVFFTVAMFWGLFPRVMVSNLNPEWSLTIYNASSSPYTLKIMTVVALVMVPIVLLYQGWTYWVFRRRVSTKHLHY
>NC_015589.1|WP_013842437.1|2480364_2482098_-|thiol-reductant-ABC-exporter-subunit-CydD
MIDRRLWREARTVRRFLLLTAVLGAVVGLVAVFQALYLARVVNGVFLEGQNLAQVRPWLLVLLGLILLRAVLSWVNEITAHRAAAEIKEKLRRELLHRLLDLGPLHARGERTGELVNLLVEGVDALEDYFARYLPQLFLAALIPVLILAFVFPLDSTTALILLFTAPLIPLFMILIGKWSENLTQRQWETLSRLSAHFLDVLQGLTTLKLFGRSKAQVEVMARISNRFRETTLGVLRIAFLSALMLEFMATISTALVAVALGLRLVYDRIPFEQAFFLLLLAPEFYLPLRMLGSQFHAGMNGVSAANRIFEVLETPVSSGPEKEEGTSLPGTEVRVSFRDVRYLYPEAEKPALQGVSFELGPGEQVALVGPSGAGKSTVTHLLLGFVQPEQGVIQVNGIPLNQIPASEWRQQVALVPQNPHLFFGTVADNILLGRPGASPDEVEEAARLSGAHEFIRELPQGYQTPVGEQGARLSGGQVQRLAIARAFLKNAPLLILDEPTAGLDPAGEQVIRQALDRLMQGRATLLIAHRLSTVRRASRILVLDQGCLVESGGHEELMKARGLYYRLVKTFQGVAS
>NC_015589.1|WP_013842436.1|2478625_2480368_-|thiol-reductant-ABC-exporter-subunit-CydC
MRTFLRLSGLILPYWPSMLLAVMLGFLTVASNIGLMGLSAYLIASAALHPPVLDLMTAIVGVRFFGICRAVLRYLERYVSHDATFRVLGQIRVWFFAGLEPLAPARLLNYRSGDLLSRIVADVETLKNFYLRVLAPPLVALLVLLLMVFFLVRYEVKLGILFMLFFLGAGIGVPLLVKGAGRNAGRRLVEVKSRLNAHLVDGIQGMTEIIAFGQVKTLCGQAGGLSQELLALQRRVAGISGLSSALTGLLMNLAMWSVLVLTIPLVAAGKLKGIDLAMLALAVLSSFEAILPLAVSLHYLDESLAAARRLFHIIEAKPAVLDSAPTSGEKPQNYDLQVKGLRFRYNGLGPWVLDGLDLRLPEGGRAALVGPSGAGKSTLVHLLLRFWDYQEGSICLGGRMLNDYTQEHLRSLVGVVSQRTHLFNATIRENLLLAKPEASEEELRQAARRARIHSFIQSLPQGYDTYVGEGGFKLSGGQRQRLAIARVLLKNAPILILDEAASGLDPLTGQALMGEIDELMEGRTTLIITHNLRGLERMDQILVLDRGRVVQQGKEEMLLKQEGLYRQLWQISQDALPASS
>NC_015589.1|WP_013842435.1|2478239_2478653_+|EVE-domain-containing-protein
MAYWLAKTEPEAFSYQDLERLGRDRWDGVKNFVALRHIGKMQPGDRMFIYHSGKTKAIVGVARVVSLAYPDPAEQDPRLVVVDVEPLYPLIRPVTLKEIKQNPAFQEWELVKQSRLSVMPVSEPHWRLIHELAGNAS
>NC_015589.1|WP_081462076.1|2477588_2478044_+|superoxide-dismutase-family-protein
MACAQILGGPLAPRLTGLVYFTAVPGGTWVAVEVCGLPPYQPAQNCGQPIGPHGFHIHENCNCEVGDVNDPFMGAGEHWNPTNQPHGNHVGDFPVLFSNNGYARMAFFTNKFKPCQVVGRSIIIHQNPDDYRTQPSGNSGKRLACGIIVNC
>NC_015589.1|WP_143758782.1|2475597_2477346_-|hypothetical-protein
MAMTVSGVNPGAAAAAASGVAKVESRDLGWQKGDVYQGTVMGRLSNNTYAVRVEGRDIIVQSPYALPVGGKVAMEVQGRQEGQYLVKLMTSHGPGQEELLKNLLDQLCIKDTPLNRNLIQGFLKQELPLRPELLQLAERLVQRLGGNNPENIEKALLGLKMGILPEPRVLDAVHSFLSGMKDSKQGGEVQQLALFMHKLTGFLGDETGAPQPPSSGMLSGDRSQENSPVVLSKSGNNLFLQLQEALQNLTLDPQKGVLKVAEQLRALINAQLPQGGAGSAVPPSAAGPEEPPQESVLPQVKVVAAQVSQKGEGESFAATPLLRPGAEAQKPLENRGTAEGGLPLGKIRESALKSTPGEAPAPIHKTPEQNSENSAAPANSKEVELQGQVKPREFGRLLQVFGRLLLEVREAVKEAGSSVQGQRLLQEGTVIERQMAGQQIFQALNKVDDPQDYLYFNLPFARDGEGETWGQLKIIKEGGKKKAIDPAHFSLALMLNTVGLGPLLLELKVRDKEVMAGGKVTEDRVAGLLKDSWPKLQDAFDEMGYHLHPCFWKVGSLGEDLRPKGLNRDNSDGKLRILDVSI
>NC_015589.1|WP_013842444.1|2491600_2493133_+|DUF5050-domain-containing-protein
MKRATLLWITVFILCLTLQVKPVLAETVKVSLPGFPVALNEVTVNNDYRQYPLIVYKDITYFPMTYYDCRFLGLETHWSTEKGLEIKSTGITGGYRDYLGKVKNKQTDTAVRAAFPVTMNGKAIENSTEAYPLLTFRNVTYFPITRELGETFGWDCQFDRDKGLIIRSGNAVVHEVYWPGYHPEYGFTTGNGYFFYSGGDGKIYQTQGGKLEEPAEIYRLPKWTYGNGEFVRPRFYVENGKPCFSYHQGGAVMGADYYFEIKPDGTCREKYSGYLTVKQFGDWSVTARQFGPPTSDNLSVQYREQEPKSVGDPAYVYGWSVIDGQSYSPSKDIYLMGKEIYILAFNPANGKNESRVHRVNMDTNQVTQMTTEAVDHFQMNTDSIYYLKEANLYRTGLQDGVTETVKTGVQSFCLLDKLVYYVDAQDSQLYKLGWEDSLNPGAKVKSLKIEDGYLICSFSSEKFIPYKLLIFNADGNLVWKGSDGIKDVILNQGVITYQSEEDGRFFSGKI
>NC_015589.1|WP_013842445.1|2493780_2494209_+|N-acetyltransferase
MVKSFDLSKLDEVMKIWLESNITAHSFIPEQFWEDNFDTVKELLPQAEIWVYEDKEAIKGFIGILNQSYIAGLFVSNQYQSKGIGSKLIEKCKQLHPVLCLDVYVKNQKAIRFYKRHGFKIEQEKENSLTGEKEYFMRRSKA
>NC_015589.1|WP_081462077.1|2495623_2495743_+|transposase
MPHAYAVIDQYIRYYNTARPHQALGYQSPVNAALTEPAA
>NC_015589.1|WP_013842446.1|2495922_2496144_-|hypothetical-protein
MKNDYDWEKVLKIAANLNKKDFYIFKLRMGFINNKTHSIREISLLLNMPLNEVLKELRRIEKYVLSEYHKNYK
>NC_015589.1|WP_013842447.1|2497288_2497774_-|hypothetical-protein
MKKLFMIIAILFCLSYFAGCSGHSDNNEFSLEKKEKATRTIQGSIWDVQLSLYWDMNEVIGIVEPYYKGTEPIRQVIVEPNFIKSKWPVGYVPLTLGKYTWQSDEITGTIPKSYDITTRTTSKTKTPLKQMNGDEAENILTKTEVQIRWVTESGEKVEMMK
>NC_015589.1|WP_013842448.1|2497835_2498609_-|hypothetical-protein
MKKLFIMILSLIFTLSICGMSLASQEDSILIQKSQITDLSNLWERASKGISDDDSIKVRNELDGANVDKFIVDKRSTTQLLKKVKKNDGIIESEYVTTYFTTIYEPKKAASSLSNILFRIADSRNWDERDSSMSARQIATYYYLKYSDGNLTWIKPQKIECKWDTSNLVAVSNGKYGAEWRGESNFSGAGWVSSSDYNNVPSITLGTLYTNTINTIPNSGYINCSTGGGYVAFVQQCKCTKGSSSWTFKSDAVWQDI
>NC_015589.1|WP_013842449.1|2502965_2505317_-|endonuclease-MutS2
MQKTIKRLEFDKVLERLAAHAHSELGKERARELVPSVDRNTIIRWQSETHEGRELLRLDPVAELGGWHDVRAAVVRAARFAVLSAEELLATGETLAAARRIKKFFTEKKDRYPLLSELAEAMIHQPQLEKDILRAILPGGEIADDASPELLQIRRGLQRSQNRIRERMESIIRSSENQKYLQDPIITIRNDRYVVPVKQEYRNQIPGIVHDQSASGATLFVEPMPVVEANNEVRRLVAAEKQEIQKILAELSQGVSEISEELTITLDALGQLDFVMAKARYSRQLNAWGPKIVEGGVMDIRKGRHPLLPADAVPATISLGKDFRSLVITGPNTGGKTVTLKTVGLFTLMTQSGLHIPAESGTEMGVFSKIYADIGDEQSIEQSLSTFSSHMTNLVDILAGAGQGSLVLLDELGAGTDPTEGAALARAILETLFQRGVCTIATTHYSELKNYAYTTPGVENASVEFDIETLRPTYRLLIGRPGRSNAFEISARLGLSPEVVQRARQFLTTEQVEVADLINKLEQTQQAAEREREEAETLRRDSEKLKERYRQLEQQLREKRESLLEKAQEEAARLVRNARLEADEAVKELRSKLAEENAKDRESAIQQARNKLQRVTSKVAAKVPERVVPGEIPRQVKPGQQVFLPKYNQKAYVLSVSGDNVQVQVGIMKMFVPLKELRRVAEEKVTSGQTQVGKVFMEKANSIGTSLDLRGMTGDEALLEIEKYLDDALLAGLNSVILIHGKGTGALRAAVHRELKSHPRVKSFRLGEAGEGSSGATVVELKQ
>NC_015589.1|WP_013842450.1|2505327_2507871_-|DUF3656-domain-containing-protein
MTQRPELLAPAGSWEALVAAVQNGADAVYLGGKMFNARQSASNFDHDEMARAVEYAHVRGVKIYVTVNILLADHELEEALRFLHFLHNTGVDGVILQDLGLARLVREVLPELPVHASTQMTVHNLEGVKGMLEAGFKRVVLAREMDLQEIARIKQETGADLEAFIHGALCVCYSGQCLMSSLIGGRSGNRGKCAQPCRLPYQLVDQGGKNRVDPSEVGEYLLSPRDINTSAYIPQLMAAGIHSFKIEGRMKRPEYVATVIRTYRSLIDRALQDSGAYTVQEEESRNLAQIFNRDFSPGYFFGNPGKDLMSYKRPNNRGVRLGRVKGYNRQDKRVEILLEEPLRLGDGIEVWVTEGGRSGIEVNSIFIKGQPVKFAPAGALVGLPIPGKIKPGDRVFKTHDAQLMERARETFTSPRETRKIPLEFFVRARVNEPLYMQVKDDRGLAAEAYSGEVGQEALKRPLTREFLQEQLNRLGNTPFELARLKVELEGKVMLPMREINELRRQVLLALEQKRLSGTRPPRVGQSTLNRRLKTALAQLEKPAATWPEKSLAVSVTDLASLKAAVRSGADIVYFGGESFRSKGPVGEQDIHDGAEFCRRHKASLVLSSPRILHDAEFESFTRMLERLRDLPLAGILVGNLGLLNRIGNYSDKPVIGDFSLNIFNSASLLYLQEKGVTRATLSPELSLKQIQEMGERAILPLEAVVQGTLPLMNTRYCPVGSILGGMAPGKKCGGPCKDQKFGLKDRMGLIFPLEVDQFCRMHLFNAKELCVIEEVPSLLKAGVTVLRIEARREDPHYVARTVGHYRQALDRFLQGDWNEQRDREAKQDLAEQSPAGLTKGHYFRGVI
>NC_015589.1|WP_013842451.1|2507896_2508847_-|hypothetical-protein
MKLKEIYDLVVNMGIEHDPRGIETVQKQLEREKRKIEDLKEEERKDVDPDRYFNPYTDTRVLYGDLDREIQRVLVGVDMEVGEVLLADRLGEKGRKIDLIMAHHPEGKATAGLYDVMHLQEDLLAQLGVPINVAEGIMAGRIAEVRRGLMPLNHNRAVDAARLLDLPLMCCHTPADNMVSEFVQKHLDEKQCQTLKEVVKALKEIPEYAEAVKTGAGPTVVVGSPERRAGKIFVDFTGGTSGSEDAYAKLSAAGVGTLVVMHISEKHRKEAEKNHVNVIIAGHMASDSLGMNLILDELVKKGLEVIPCSGLIRVQR
>NC_015589.1|WP_013842452.1|2508890_2509463_-|DNA-3-methyladenine-glycosylase
MQPLPEEFYNRETTRVARELLGHLLVHHTAQGTTLGKIVETEAYLQGDPACHAAKKMTPRNRVMFGPPGRAYVYFTYGMHYCFNVVTNAEGVGEAVLIRALEPLEGLELMIKRRGRPKPEELCSGPARLVQAMGITKEHNQCILTQGSLFIAPSLEPPPDIVTTTRIGIKEGVDLPLRFYIQGNKFISRK

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Crispr_ID: NC_015589_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_9

2951501-2951585

Orphan

Consensus_repeat	Method
CAATTACAATCTATTCTTGGGAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015589_9

>merge|NC_015589|9|2951501-2951585|CRISPRCasFinder
CAATTACAATCTATTCTTGGGAATGTCAAAACTCAGAAGTCGTCCAGCAACTGCTCGACTCAATTACAATCTGTTCTTGGGAATG

>NC_015589|9|9|2951501-2951585|CRISPRCasFinder
CAATTACAATCTATTCTTGGGAATG	TCAAAACTCAGAAGTCGTCCAGCAACTGCTCGACT
CAATTACAATCTGTTCTTGGGAATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013842862.1\|2956792_2957581_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|223326
NC_015589.1\|WP_013842863.1\|2957570_2958287_-\|thymidylate-kinase	unknown	unknown	gnl\|CDD\|223203
NC_015589.1\|WP_013842845.1\|2940782_2941562_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_041275816.1\|2949226_2950261_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|225131
NC_015589.1\|WP_013842852.1\|2947847_2948561_-\|TrmB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224296
NC_015589.1\|WP_013842855.1\|2951779_2952001_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842850.1\|2945220_2946339_-\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NC_015589.1\|WP_013842864.1\|2958289_2959012_-\|dTMP-kinase	unknown	unknown	gnl\|CDD\|223203
NC_015589.1\|WP_041275445.1\|2954325_2954973_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_015589.1\|WP_013842865.1\|2959008_2960532_-\|Ppx/GppA-family-phosphatase	unknown	unknown	gnl\|CDD\|223326
NC_015589.1\|WP_013842846.1\|2941564_2941930_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NC_015589.1\|WP_013842854.1\|2950538_2951198_+\|sporulation-membrane-protein-YtaF	unknown	unknown	gnl\|CDD\|274321
NC_015589.1\|WP_143758893.1\|2952189_2952450_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235937
NC_015589.1\|WP_013842857.1\|2952596_2953238_-\|US12-family-protein	unknown	unknown	gnl\|CDD\|376437
NC_015589.1\|WP_143758796.1\|2953358_2953682_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842847.1\|2941952_2942651_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_015589.1\|WP_013842851.1\|2946646_2947858_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NC_015589.1\|WP_013842849.1\|2943732_2945121_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NC_015589.1\|WP_013842848.1\|2942848_2943562_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_015589.1\|WP_013842861.1\|2955684_2956482_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013842862.1\|2956792_2957581_-\|HD-domain-containing-protein	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	1.89376e-24
NC_015589.1\|WP_013842863.1\|2957570_2958287_-\|thymidylate-kinase	gnl\|CDD\|223203	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism].	9.71665e-31
NC_015589.1\|WP_041275816.1\|2949226_2950261_+\|4Fe-4S-binding-protein	gnl\|CDD\|225131	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion].	1.61203e-08
NC_015589.1\|WP_013842852.1\|2947847_2948561_-\|TrmB-family-transcriptional-regulator	gnl\|CDD\|224296	COG1378, COG1378, Predicted transcriptional regulators [Transcription].	1.7136e-21
NC_015589.1\|WP_013842850.1\|2945220_2946339_-\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NC_015589.1\|WP_013842864.1\|2958289_2959012_-\|dTMP-kinase	gnl\|CDD\|223203	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism].	1.44172e-35
NC_015589.1\|WP_041275445.1\|2954325_2954973_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.67149e-13
NC_015589.1\|WP_013842865.1\|2959008_2960532_-\|Ppx/GppA-family-phosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	2.61732e-111
NC_015589.1\|WP_013842846.1\|2941564_2941930_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	7.58265e-41
NC_015589.1\|WP_013842854.1\|2950538_2951198_+\|sporulation-membrane-protein-YtaF	gnl\|CDD\|274321	TIGR02840, conserved_hypothetical_protein, putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein. [Cellular processes, Sporulation and germination].	8.59853e-48
NC_015589.1\|WP_143758893.1\|2952189_2952450_-\|hypothetical-protein	gnl\|CDD\|235937	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional.	4.01816e-13
NC_015589.1\|WP_013842857.1\|2952596_2953238_-\|US12-family-protein	gnl\|CDD\|376437	pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1. Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localized to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localize predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress. BI-1 appears to exert its effect through an interaction with calmodulin. The budding yeast member of this family has been found unexpectedly to encode a BH3 domain-containing protein (Ybh3p) that regulates the mitochondrial pathway of apoptosis in a phylogenetically conserved manner. Examination of the crystal structure of a bacterial member of this family shows that these proteins mediate a calcium leak across the membrane that is pH-dependent. Calcium homoeostasis balances passive calcium leak with active calcium uptake. The structure exists in a pore-closed and pore-open conformation, at pHs of 8 and 6 respectively, and the pore can be opened by intracrystalline transition; together these findings suggest that pH controls the conformational transition.	4.90474e-16
NC_015589.1\|WP_013842847.1\|2941952_2942651_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.81581e-66
NC_015589.1\|WP_013842851.1\|2946646_2947858_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	1.17778e-163
NC_015589.1\|WP_013842849.1\|2943732_2945121_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NC_015589.1\|WP_013842848.1\|2942848_2943562_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	3.7178e-08
NC_015589.1\|WP_013842861.1\|2955684_2956482_-\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	1.00408e-134

>NC_015589.1|WP_013842854.1|2950538_2951198_+|sporulation-membrane-protein-YtaF
MNILGIILISLALNLDALGVGFSYGIRKIKLPLLSMIFICLISIASLGLSMLAGCAINHYLSAAIAKHMGGGILVFMGAWAIFQYFHSKTLMPVRDIAESHTTTVPDITTLFQLRLFGILIQVLKDPQVADADQSGTISIQESLLLGMALALDSIGAGVAISLLGYNILTMALCVGACQFIFTYCGTLAGAKLSKTSMGRQMALLPGFILVIIGISRFF
>NC_015589.1|WP_041275816.1|2949226_2950261_+|4Fe-4S-binding-protein
MSGTGNTRRVAHWFADVAREKGIPSKIYQITKHGRQPKVNTCSTNLLGILFPTHGFTAPWLIIRFVLSLPRGKGTQAFAVATRAGLKIGPVFTPGFEGTAVYLVALLLLLKGYNIRLLSGIDMVSNWLALHWGLSPANSRAIIDRNKPRALKMANILYSGGRYIRGQVQLVLGILLFQISLGYLLMGRFMLAKLFYANENCNGCGLCEKNCPTGSVKMRGWKKKRPFWSLTCESCMRCMGFCPKKAVEASHPLFAVMIYLISIPLSAYILYLFGQQVTWLTNLSGWARVIVNYVYSLSVITAAYFIFMLLMRIPLINRLLTYLTPVHYYRRYHEPDTKLKDFLE
>NC_015589.1|WP_013842852.1|2947847_2948561_-|TrmB-family-transcriptional-regulator
MDLVNCLMVTGLTSYEARVYIALLSEGPLSGYEAAKFSGISRSNVYIALEGLIEKGAAYKIDAESIQYTAVPVDEYCQNKKRAFDQVLSYIKENAPQKLEPPEAYITISGDGRIIDKMKTLLENAKERLYLSMAARECQIIKSELVSAAKRGIKIVIITSQPFHMEGAEIYYADKEAYQIRLIADSSFILTGNMKNEKNMATCLFTQNKTLITLFKEALRNEIDLITMKKGKRTSVY
>NC_015589.1|WP_013842851.1|2946646_2947858_-|diaminopimelate-decarboxylase
MFINHNTAYELIEHYGSPLYVYDESILRNRCRELKNLLPGINCTVNYSAKANSNLEILKIILNEGLDVDAMSPGEIYIEQLAGFPVHRIFYIGNNVSAEEMKYAIEREILVSVDSLSQLELYGKINAGGAVAVRFNPGVGAGHHEKVITAGRNTKFGVQADFADQVKEIVKKYQLKLVGINQHIGSLILNEDKYIQGVKGLLQIAKQFPNLQFIDLGGGLGVPYGEGEARLDLSMLAIKLSALLKEFLQNYDNKEVVFKIEPGRYLVAECGILLGQVYSIKENYEKTYIGTDLGMNVLVRPVLYDSYHQIEVIGKKERSGPLKPVTVVGNICESGDFIAKDRLLPEIREGDLLAVLNAGAYGYVMSSNYNCRLRPGEVLMNADGSHRMIRRRDCFEDLVRHYV
>NC_015589.1|WP_013842850.1|2945220_2946339_-|alanine-dehydrogenase
MIVGVPKEIKNNENRVAITPAGVEAMLNHGHRVIIENKAGVGSGISNDDYLAAGAEIVETAKEVFDRADMIMKVKEPLAAEYDLFKEEQMLFTYLHLAPEPELTAALLKKKVAGIAYETIQLDNGSLPLLTPMSEVAGRMSIQIGARYLEKTYGGSGVLLAGVPGVPAAEVVIVGGGIVGTNAAKMAMGLGANVTILDLNVDRLRYLDDLFGGRIHTVASNSYNIAQAVKKADLLVGAVLIPGAKAPKLVKEEMVKGMKPGSVIVDVAIDQGGSIETIDRVTTHSEPTYEKYGVIHYSVANMPGAVARTSTFALTNVTLPYALQLADKGWVKAVQENRALAKGVNVAAGQCTYEAVAKALNLAYTPLEQVLA
>NC_015589.1|WP_013842849.1|2943732_2945121_-|amino-acid-permease
MKTPENEGLHRGLKERHIQLIAIGGAIGVGLFLGSSTAIKTAGPSLMLSYLIAGLAIFIVLRALGEMAVTYPLSGSFGAYANMFIGPVYGYLTSWTYWFMWVVTCMAEITAAGIYMTFWFPDTPQWAWALAALVIMTVVNLISVKHYGEFEFWFALIKVVTIIAMILIGGAMIFFGIGNNGVPIGISNLTAHGGFFAKGFTGPALALVMVAFAYLGMELIGVTAGEAENPQKTLPSAINKVLWRILIFYVGALFIILCLFPWNEIDPSKGSPFVLTFSKVGIPAAAGIINFVVLTAALSSCNSGIFSTGRMLYTLALQKKAPAFFGKLSGSGVPVNGIFISAAFLCIGVVLNYLVPAKVFEYVTSVTTIGAVWVWGIILVAQINYRKSLSPEQVSQLKFPTPLWPLTSYLTLAFLALVVIMMAFSEGTRIALYVGPVWFGLLLLSYYSFGFNKDDAVRKQKA
>NC_015589.1|WP_013842848.1|2942848_2943562_-|hypothetical-protein
MEELLNNILLQLKTLNQKIDHLEEGQALLGFRFDKLEQRQAVLESKFDKLEQRQAVLESKFDKLEQRQAVLESKFDKLEQRQAVLESKFDKLEQRQAVLESKFDKLEQRQAVLESKFDKLEQRQAVLESKFDNLEFKVDELDKRVDRLTIHMENQVVDKVRALFDGWTEHEEKFVDTVEKVDQIHLKFDRLELETDKLGISLEKGMAVQAGHSELLDLLAVRSIRQEADIQLLRKAR
>NC_015589.1|WP_013842847.1|2941952_2942651_+|ABC-transporter-ATP-binding-protein
MNSIVAFSNVTKKYPGRTALNNISFTLPQGKVIGLVGPNGSGKSTLLKLISGLARPSSGLVEVNGKAAHRRIAGEVAYLSELDVLYPFFTVLETIRFNAGLFKDFDQAKAMEMLTFMQLEPDQKVRSLSKGNRGRLKIILALSRQVPLVLMDEPLSGLDPLVRDSIIRSLISFLDLESQTVIMSTHEVAEVEPILDMVVAIQKGQIRNIDEVENIRSQHGQSLIQWMKETLT
>NC_015589.1|WP_013842846.1|2941564_2941930_+|GntR-family-transcriptional-regulator
MNQSYNNTQPIYLQIVQRISRQVIRGELKAGDKMLSVREMALQCGVNPNTVQRVYNELEQLGIAETRRGLGTFITENEKRLLQLREDLKREQMEDFIKDMKEMGFSAEEILDGLRETLFPN
>NC_015589.1|WP_013842845.1|2940782_2941562_+|hypothetical-protein
MNAWWNLVKKEHRMIRNSALIQFAFLFLAGLWLIYRAPNQSHMVVLVIPVFFFFSLFYLSLYMFKNLNYEFKYAPHLWLHCPQPTWMLLGAKFFTGLLQMLVILLLLGGIILLAGMNSFLPQSLGIDSLPTAALVTELGAYMALLALALGIYFSAWVTLIVVVSAAVRNILGRFRWLAGIGTLWAGTWGMDQLRSTWVYDQLTHWGALNIPLTTLKYVPQISDSIHLGPVYGGEILFYIILTLALYFLSTWLIDNKVEV
>NC_015589.1|WP_013842855.1|2951779_2952001_-|hypothetical-protein
MKLSVRCCLDEKEIAEIIAKEKRIYESAGLEIEEMEIIEICPGDTNVRCVIRDKKPVKQILGSKAQNLVMNQN
>NC_015589.1|WP_143758893.1|2952189_2952450_-|hypothetical-protein
MKITVHGNLTEKEIESIITEEKGRFASRQKEIAEIEISEINREELEVKTWAQSDIRRVRRITGYLSTVDRFNDAKREELKERVVHL
>NC_015589.1|WP_013842857.1|2952596_2953238_-|US12-family-protein
MRLSASVYERTGDDTLSASMYNFVIGACLLLGFAVTAFTAFTFADLQLTILHYVGYLVSSIAGIIISSKSKSAVVSFLGYMMVVVPFGVILGPALNPLAPGLIHQAAVITGAITGTMLIFSTAFPSFFAGLGRVLLIGLIGLVVANVITWVMGIHPTILSWISAVLFSLYIGYDWYRAQNIPFTMDNAVDVCVSLYLDIINLFLSILRILSDD
>NC_015589.1|WP_143758796.1|2953358_2953682_-|hypothetical-protein
MRFGKSAFKYEGTLKGYLTLLFVLCAADLLITFAALPLGAMEINPVMAEIIHTPQGIMLKLIGSLAVVAWLWHRRNETVLKLAKWLVGGYGFVVMWNLWVFVRLAAR
>NC_015589.1|WP_041275445.1|2954325_2954973_-|TetR/AcrR-family-transcriptional-regulator
MFSKFFNLELEKQERILNASMKEFAQKGFKNASTNEIVKEADIAKGMLFHYFNNKKDLFLFLYDYSLEALEEEFFGKIDLQERDLLKRWRQLALLKIDVIAKYPEMFRFIMAANFENDGKVKNELQNRNKDFITSSYAMIYDNIDHSKWRNDIDIKRAMDIINWTIEGFGVRQQEKTKLPSFSEFNCDEIMAEMDRYLELFRNCFYKQQEDASSQ
>NC_015589.1|WP_013842861.1|2955684_2956482_-|exodeoxyribonuclease-III
MLFKVASFNVNSIRARKEALLDWLSINRPDVICLQETKVMDHDFPAADFEQAGYQCLYKGQKSYNGVAILSLHPMKPLATELGAFTEPGEARMIAALIQNIPIVNTYIPQGFAPDSAKFSYKLAWIRELRHYFERNFKPDEPLLWTGDFNVAPETIDVHNPKRLLGHVGFHPEEHKVLDYVREWGFQDVFRLHQPEGGHFTFWDYRVPKGVEKNLGWRIDHIWATAPLANCSTRAWIDIEPRKREKPSDHTFILAEFDLPDAFKG
>NC_015589.1|WP_013842862.1|2956792_2957581_-|HD-domain-containing-protein
MSNNAIYLEMVLTLGNKFQYDQLHAAAVERLSVSLFEQLRNIHHLGESELTLLRHAALLHDIGIFISKKRHHKHSAYLVLHDRGLDGYPQKERTLLALLVRNHRKNVKIEASNLSRFSKPILKKLIALLRIADALDYFHRGQTIVKDVRMQGENCIFTVEGVNLNTLGEQLGKKSAYFREVFGLNPVFASADAPHGEPLNFFKELDIEDQPTEYDGDSIELHDETTAGTEQGTEDDDKENLEHHFQPAEEQEILTEKPVAKV
>NC_015589.1|WP_013842863.1|2957570_2958287_-|thymidylate-kinase
MEKQLTFYGQGLPYLKGHEYSGILIVIEGADCSGRSWQVKELRTWLERSGHAVLDTGLRRSGLIGDAILEAKQGNTLGKRTLGMLYATDFADQLENKILPALRAGFVVLADRYIFTLMARDLVRGASKDWLRKLFGFAPIPHLIFYLQVDPQVLLYRSFEKYGFLDYWESGMDICLSGDIFESFQIYQSLLARQYDQMAEEFNFTVLDGQESPLIIQKNIRRDIQRFLEERRLETDVK
>NC_015589.1|WP_013842864.1|2958289_2959012_-|dTMP-kinase
MIKARNGALAGYNGRLIIVEGCDGSGKSTQLYLLKRWLEEQQYPVFFTEWNSSELVKKSTKKAKKLNLLTPTTFSLIHASDFADRYEKLILPHLRAGYLVLADRYVYTAFARDIARGCDPEWVRNLYSFALRPDIAFYFQAPLEVSVQRILSGRPELKYHESGMDLGLSSDPVESFKLFQGIIKQQYDEMIEAEGLTVMDATLSIEEQQSRMREMVSRLVLRDFHPPTYGKYLSCLVQGE
>NC_015589.1|WP_013842865.1|2959008_2960532_-|Ppx/GppA-family-phosphatase
MSKNIGIIDLGSNSIRLILMTIVNNGAYKLLDEIKETARISENMGPERVIKAPAIARAVQTIKLLQKFCRANKVDSVVGVATAAIRNAVNGGEVLETVMKETGVSFRILSGEEEARYVYFGVVNSLEFNDALIIDIGGGSTELILCKERRMVQWASLPFGVVDLTEGFLPTPEIFPDQIERLEKFLRSQYSTIPWLESAKGLEVLGVGGTVRNLGRMDRKKTRFSLNILHNYRIHTERVKQTYLYLQDTTIDERKAIPGLSKERADIILGGVAAIAKLLEHTGAPGIRVSGSGLREGIFYEHYFRNQSRYVLNDVVEHSVQNFMDLYRVRRHHSEHVAKLSLSLFDQLESLHGYGFWERRILRIAALLHDVGNAVSYYNHHKHSMYILLNARINGLSHREMVLVALVAASHGKIDLKFKLQQHSDVLYPQDGMLVRRLGVLLRMGENLDRSEAGVVEDVICTIKENEVQIDCKVTDNADLEIRELYKKVTNFNKVFGKRFKFPKEEQ

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Crispr_ID: NC_015589_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_10

3057773-3061057

TypeI-B

Consensus_repeat	Method
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CRISPRCasFinder
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CRT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	PILER-CR

49 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NC_015589_10

>merge|NC_015589|10|3057773-3061057|CRISPRCasFinder,CRT,PILER-CR
GTTTTGAATTTTTATACGTAAGCTAGTAACATAGAAAACCGCCCTTTTCGGACGGTTCTTCTTGTTATCTCAAATCCTTATAGGTAGGCTAGTAACTTTTCTGGTCCCCGATCATGCCAGCAGGGATGTAGTTTTGTTTCAAATCCTTATAGGTAGGCTAGTAACTTAACGCCACAGCTTTTGATCCTAAAAACTACATTGGGTTTCAAATCCTTATAGGTAGACTAGTAACCACCTTGTAGTAGTAGGTCAATCTCGATCTCTCCCTCCGTTTCAAATCCTTATAGGTAGACTAGTAACCGAGGAAGCAGAGTTTCATGCTGGTGATGTATTAGAGGTTTCAAATCCTTATAGGTAGACTAGTAACCCTAATCCGCCTGATGTGGCTTTGGCCTTTCGGTTTAAGTTTCAAATCCTTATAGGTAGACTAGTAACTTCAGGTTCTTCCATGCTTCCACAATAGAGTCAACGTTTCAAATCCTTATAGGTAGACTAGTAACTTTACGATACCGTCCCAAGCTTGTTGCACTGTTCCATGTTTCAAATCCTTATAGGTAGACTAGTAACTCCCATTCCACATAGTTGGTCACTTCCACCCGTCCGTGTTTCAAATCCTTATAGGTAGACTAGTAACGATATTACTAAAAAATATGGTGATGTTGTTGCATTATGTTTCAAATCCTTATAGGTAGACTAGTAACAAAACTCTTCTTTCAGCTTCGGCGGCTGCAGTTTGGAGTTTCAAATCCTTATAGGTAGACTAGTAACCCACACTGGTTTTGCTCAGCAGTTGCTTAATCTCGTTTCAAATCCTTATAGGTAGACTAGTAACGGCTGCAAGGATGCCGTAAACGTCGCCATAGAGGATGGTTTCAAATCCTTATAGGTAGACTAGTAACTCGTATAGGCTCATGACACGAACCACCCTTTGCGTGTTTCAAATCCTTATAGGTAGACTAGTAACGTTGGAGATAAATAGGATCCGGTTATCCGCCCCTGGTTTCAAATCCTTATAGGTAGACTAGTAACTTCCTACTAAGGATAATCTTGCCCATTTTGCCCAGGGTTTCAAATCCTTATAGGTAGACTAGTAACATGCCAACGCACCGACAAAGAAAACATTGAGATGCTGTTTCAAATCCTTATAGGTAGACTAGTAACGTCTCAGTAGACAAAGAAAATGACACATATGACGGAGTTTCAAATCCTTATAGGTAGACTAGTAACATCGAAAACCGGGCCGTCAAATAGACATTGACCATCCCGTTTCAAATCCTTATAGGTAGACTAGTAACTGATTATTACCTATGCGCACAACCACGTTATTGTGGTTTCAAATCCTTATAGGTAGACTAGTAACAATGCCAGGAGAACGTCTTATTGATGCTCTTGTAGAGTTTCAAATCCTTATAGGTAGACTAGTAACTATTGCGGACTTTCTCCAATCCCTGGTCAGCAGCCAGGTTTCAAATCCTTATAGGTAGACTAGTAACAATTACCGCAAATATTAGTCATATAGAACTAACTAAGTTTCAAATCCTTATAGGTAGACTAGTAACAGAAGATATATTTTTAAAAATGAATCAAATGACTCCGTTTCAAATCCTTATAGGTAGACTAGTAACGTATGAACGCTGCTTAGATCAAGTGGATCATTTTGGTTTCAAATCCTTATAGGTAGACTAGTAACGATCGACATAGCAGTCACAAGGCTGCGAGAGTGTGGTTTCAAATCCTTATAGGTAGACTAGTAACAGTCCGTTATCGTTTAACCATTGGCTGATTTTGTCAAGTTTCAAATCCTTATAGGTAGACTAGTAACATGGAAAGTAAGCCTTTGGATATAACGATCATCATTGTTTCAAATCCTTATAGGTAGACTAGTAACAGAATGAAAGAATTTGGACTGAAATTTTCAGTAGAAGTTTCAAATCCTTATAGGTAGACTAGTAACTAAACTACAAGCACTTAAACAACTCAAAGCAGGGGAGTTTCAAATCCTTATAGGTAGACTAGTAACGTCCATCCACGGGCAGAAAACGCCAGTTTGTATACGGTTTCAAATCCTTATAGGTAGACTAGTAACTTTCATCTTTACCTGGGTTAGGCGAGGAAGACAATAGTTTCAAATCCTTATAGGTAGACTAGTAACGCGATAAATCTCTTTCAAGTCTTTTTTTCTTGATGGTTTCAAATCCTTATAGGTAGACTAGTAACGATTTTCCTTGCCTTCACCGCTTGTTTTCTTGACTTGTTTCAAATCCTTATAGGTAGACTAGTAACTCTGCCGCAAGTGCGCGGAGGAGATCGAGATAGGTGGCTCGTTTCAAATCCTTATAGGTAGACTAGTAACAGTTTGACATCTCCCTGAAACAAGTCCGAATCGCGGGTTTCAAATCCTTATAGGTAGACTAGTAACCATGTAGTCCGGAAACCAATGCCAGCCCACGTATTCACAGTTTCAAATCCTTATAGGTAGACTAGTAACGAAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGAGTTTCAAATCCTTATAGGTAGACTAGTAACAAGCCTCTCTTCCCTGCGTTCGTTGTGACGTAGCACAGTTTCAAATCCTTATAGGTAGACTAGTAACATGCTCTGCAGGACCCAAATGTAATCAAACACGCTTAGTTTCAAATCCTTATAGGTAGACTAGTAACCCATTTAGAATAATTCTTGCAGTGCGACCTAAACGGTGTTTCAAATCCTTATAGGTAGACTAGTAACTTCTTTGATGCGTTTTTGTCTGTCATCTTGGCATCGGTTTCAAATCCTTATAGGTAGACTAGTAACGTGCTACGCGTCGAATGTCACTGTCATTCCGTACAGTTTCAAATCCTTATAGGTAGACTAGTAACAAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGAGTTTCAAATCCTTATAGGTAGACTAGTAACAGTCTTTTCTCCCCTGGTTTCAGTTCTTACAATGCGGGTTTCAAATCCTTATAGGTAGACTAGTAACTTGTTGCCTTCATGTTTAATCCGAAAGACTATATCCTGTTTCAAATCCTTATAGGTAGACTAGTAACGGCCGCCTTCTGCACCGCAGATAAAGCAGACTGGTAAGTTTCAAATCCTTATAGGTAGACTAGTAACGTGCTAAAACATTCGTCGGTTGTCTTTCTACATATGTTTCAAATCCTTATAGGTAGACTAGTAACTTAATCGTCGTCGGCTTATACCGACGACAACATCCGATGTTTCAAATCCTTATAGGTAGACTAGTAAC

>NC_015589|10|10|3057773-3061057|CRISPRCasFinder
GTTTTGAATTTTTATACGTAAGCTAGTAAC	ATAGAAAACCGCCCTTTTCGGACGGTTCTTCTTGTT
ATCTCAAATCCTTATAGGTAGGCTAGTAAC	TTTTCTGGTCCCCGATCATGCCAGCAGGGATGTAGTTTT
GTTTCAAATCCTTATAGGTAGGCTAGTAAC	TTAACGCCACAGCTTTTGATCCTAAAAACTACATTGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CACCTTGTAGTAGTAGGTCAATCTCGATCTCTCCCTCC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CGAGGAAGCAGAGTTTCATGCTGGTGATGTATTAGAG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CCTAATCCGCCTGATGTGGCTTTGGCCTTTCGGTTTAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTCAGGTTCTTCCATGCTTCCACAATAGAGTCAAC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTTACGATACCGTCCCAAGCTTGTTGCACTGTTCCAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TCCCATTCCACATAGTTGGTCACTTCCACCCGTCCGT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GATATTACTAAAAAATATGGTGATGTTGTTGCATTAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AAAACTCTTCTTTCAGCTTCGGCGGCTGCAGTTTGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CCACACTGGTTTTGCTCAGCAGTTGCTTAATCTC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GGCTGCAAGGATGCCGTAAACGTCGCCATAGAGGATG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TCGTATAGGCTCATGACACGAACCACCCTTTGCGT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTTGGAGATAAATAGGATCCGGTTATCCGCCCCTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTCCTACTAAGGATAATCTTGCCCATTTTGCCCAGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATGCCAACGCACCGACAAAGAAAACATTGAGATGCT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTCTCAGTAGACAAAGAAAATGACACATATGACGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATCGAAAACCGGGCCGTCAAATAGACATTGACCATCCC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TGATTATTACCTATGCGCACAACCACGTTATTGTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AATGCCAGGAGAACGTCTTATTGATGCTCTTGTAGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TATTGCGGACTTTCTCCAATCCCTGGTCAGCAGCCAG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AATTACCGCAAATATTAGTCATATAGAACTAACTAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGAAGATATATTTTTAAAAATGAATCAAATGACTCC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTATGAACGCTGCTTAGATCAAGTGGATCATTTTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GATCGACATAGCAGTCACAAGGCTGCGAGAGTGTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGTCCGTTATCGTTTAACCATTGGCTGATTTTGTCAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATGGAAAGTAAGCCTTTGGATATAACGATCATCATT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGAATGAAAGAATTTGGACTGAAATTTTCAGTAGAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TAAACTACAAGCACTTAAACAACTCAAAGCAGGGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTCCATCCACGGGCAGAAAACGCCAGTTTGTATACG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTTCATCTTTACCTGGGTTAGGCGAGGAAGACAATA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GCGATAAATCTCTTTCAAGTCTTTTTTTCTTGATG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GATTTTCCTTGCCTTCACCGCTTGTTTTCTTGACTT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TCTGCCGCAAGTGCGCGGAGGAGATCGAGATAGGTGGCTC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGTTTGACATCTCCCTGAAACAAGTCCGAATCGCGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CATGTAGTCCGGAAACCAATGCCAGCCCACGTATTCACA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GAAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AAGCCTCTCTTCCCTGCGTTCGTTGTGACGTAGCACA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATGCTCTGCAGGACCCAAATGTAATCAAACACGCTTA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CCATTTAGAATAATTCTTGCAGTGCGACCTAAACGGT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTCTTTGATGCGTTTTTGTCTGTCATCTTGGCATCG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTGCTACGCGTCGAATGTCACTGTCATTCCGTACA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGTCTTTTCTCCCCTGGTTTCAGTTCTTACAATGCGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTGTTGCCTTCATGTTTAATCCGAAAGACTATATCCT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GGCCGCCTTCTGCACCGCAGATAAAGCAGACTGGTAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTGCTAAAACATTCGTCGGTTGTCTTTCTACATAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTAATCGTCGTCGGCTTATACCGACGACAACATCCGAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC

>NC_015589|10|8|3057773-3061057|CRT
GTTTTGAATTTTTATACGTAAGCTAGTAAC	ATAGAAAACCGCCCTTTTCGGACGGTTCTTCTTGTT
ATCTCAAATCCTTATAGGTAGGCTAGTAAC	TTTTCTGGTCCCCGATCATGCCAGCAGGGATGTAGTTTT
GTTTCAAATCCTTATAGGTAGGCTAGTAAC	TTAACGCCACAGCTTTTGATCCTAAAAACTACATTGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CACCTTGTAGTAGTAGGTCAATCTCGATCTCTCCCTCC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CGAGGAAGCAGAGTTTCATGCTGGTGATGTATTAGAG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CCTAATCCGCCTGATGTGGCTTTGGCCTTTCGGTTTAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTCAGGTTCTTCCATGCTTCCACAATAGAGTCAAC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTTACGATACCGTCCCAAGCTTGTTGCACTGTTCCAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TCCCATTCCACATAGTTGGTCACTTCCACCCGTCCGT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GATATTACTAAAAAATATGGTGATGTTGTTGCATTAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AAAACTCTTCTTTCAGCTTCGGCGGCTGCAGTTTGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CCACACTGGTTTTGCTCAGCAGTTGCTTAATCTC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GGCTGCAAGGATGCCGTAAACGTCGCCATAGAGGATG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TCGTATAGGCTCATGACACGAACCACCCTTTGCGT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTTGGAGATAAATAGGATCCGGTTATCCGCCCCTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTCCTACTAAGGATAATCTTGCCCATTTTGCCCAGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATGCCAACGCACCGACAAAGAAAACATTGAGATGCT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTCTCAGTAGACAAAGAAAATGACACATATGACGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATCGAAAACCGGGCCGTCAAATAGACATTGACCATCCC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TGATTATTACCTATGCGCACAACCACGTTATTGTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AATGCCAGGAGAACGTCTTATTGATGCTCTTGTAGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TATTGCGGACTTTCTCCAATCCCTGGTCAGCAGCCAG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AATTACCGCAAATATTAGTCATATAGAACTAACTAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGAAGATATATTTTTAAAAATGAATCAAATGACTCC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTATGAACGCTGCTTAGATCAAGTGGATCATTTTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GATCGACATAGCAGTCACAAGGCTGCGAGAGTGTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGTCCGTTATCGTTTAACCATTGGCTGATTTTGTCAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATGGAAAGTAAGCCTTTGGATATAACGATCATCATT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGAATGAAAGAATTTGGACTGAAATTTTCAGTAGAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TAAACTACAAGCACTTAAACAACTCAAAGCAGGGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTCCATCCACGGGCAGAAAACGCCAGTTTGTATACG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTTCATCTTTACCTGGGTTAGGCGAGGAAGACAATA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GCGATAAATCTCTTTCAAGTCTTTTTTTCTTGATG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GATTTTCCTTGCCTTCACCGCTTGTTTTCTTGACTT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TCTGCCGCAAGTGCGCGGAGGAGATCGAGATAGGTGGCTC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGTTTGACATCTCCCTGAAACAAGTCCGAATCGCGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CATGTAGTCCGGAAACCAATGCCAGCCCACGTATTCACA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GAAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AAGCCTCTCTTCCCTGCGTTCGTTGTGACGTAGCACA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATGCTCTGCAGGACCCAAATGTAATCAAACACGCTTA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CCATTTAGAATAATTCTTGCAGTGCGACCTAAACGGT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTCTTTGATGCGTTTTTGTCTGTCATCTTGGCATCG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTGCTACGCGTCGAATGTCACTGTCATTCCGTACA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGTCTTTTCTCCCCTGGTTTCAGTTCTTACAATGCGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTGTTGCCTTCATGTTTAATCCGAAAGACTATATCCT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GGCCGCCTTCTGCACCGCAGATAAAGCAGACTGGTAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTGCTAAAACATTCGTCGGTTGTCTTTCTACATAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTAATCGTCGTCGGCTTATACCGACGACAACATCCGAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC

>NC_015589|10|9|3057908-3061057|PILER-CR
GTTTCAAATCCTTATAGGTAGGCTAGTAAC	TTAACGCCACAGCTTTTGATCCTAAAAACTACATTGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CACCTTGTAGTAGTAGGTCAATCTCGATCTCTCCCTCC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CGAGGAAGCAGAGTTTCATGCTGGTGATGTATTAGAG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CCTAATCCGCCTGATGTGGCTTTGGCCTTTCGGTTTAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTCAGGTTCTTCCATGCTTCCACAATAGAGTCAAC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTTACGATACCGTCCCAAGCTTGTTGCACTGTTCCAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TCCCATTCCACATAGTTGGTCACTTCCACCCGTCCGT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GATATTACTAAAAAATATGGTGATGTTGTTGCATTAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AAAACTCTTCTTTCAGCTTCGGCGGCTGCAGTTTGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CCACACTGGTTTTGCTCAGCAGTTGCTTAATCTC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GGCTGCAAGGATGCCGTAAACGTCGCCATAGAGGATG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TCGTATAGGCTCATGACACGAACCACCCTTTGCGT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTTGGAGATAAATAGGATCCGGTTATCCGCCCCTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTCCTACTAAGGATAATCTTGCCCATTTTGCCCAGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATGCCAACGCACCGACAAAGAAAACATTGAGATGCT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTCTCAGTAGACAAAGAAAATGACACATATGACGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATCGAAAACCGGGCCGTCAAATAGACATTGACCATCCC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TGATTATTACCTATGCGCACAACCACGTTATTGTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AATGCCAGGAGAACGTCTTATTGATGCTCTTGTAGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TATTGCGGACTTTCTCCAATCCCTGGTCAGCAGCCAG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AATTACCGCAAATATTAGTCATATAGAACTAACTAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGAAGATATATTTTTAAAAATGAATCAAATGACTCC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTATGAACGCTGCTTAGATCAAGTGGATCATTTTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GATCGACATAGCAGTCACAAGGCTGCGAGAGTGTG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGTCCGTTATCGTTTAACCATTGGCTGATTTTGTCAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATGGAAAGTAAGCCTTTGGATATAACGATCATCATT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGAATGAAAGAATTTGGACTGAAATTTTCAGTAGAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TAAACTACAAGCACTTAAACAACTCAAAGCAGGGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTCCATCCACGGGCAGAAAACGCCAGTTTGTATACG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTTCATCTTTACCTGGGTTAGGCGAGGAAGACAATA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GCGATAAATCTCTTTCAAGTCTTTTTTTCTTGATG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GATTTTCCTTGCCTTCACCGCTTGTTTTCTTGACTT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TCTGCCGCAAGTGCGCGGAGGAGATCGAGATAGGTGGCTC
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGTTTGACATCTCCCTGAAACAAGTCCGAATCGCGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CATGTAGTCCGGAAACCAATGCCAGCCCACGTATTCACA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GAAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AAGCCTCTCTTCCCTGCGTTCGTTGTGACGTAGCACA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	ATGCTCTGCAGGACCCAAATGTAATCAAACACGCTTA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	CCATTTAGAATAATTCTTGCAGTGCGACCTAAACGGT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTCTTTGATGCGTTTTTGTCTGTCATCTTGGCATCG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTGCTACGCGTCGAATGTCACTGTCATTCCGTACA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AAATGTTGTTGCGTATGGCTTTTGTTCCATCTGGA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	AGTCTTTTCTCCCCTGGTTTCAGTTCTTACAATGCGG
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTGTTGCCTTCATGTTTAATCCGAAAGACTATATCCT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GGCCGCCTTCTGCACCGCAGATAAAGCAGACTGGTAA
GTTTCAAATCCTTATAGGTAGACTAGTAAC	GTGCTAAAACATTCGTCGGTTGTCTTTCTACATAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC	TTAATCGTCGTCGGCTTATACCGACGACAACATCCGAT
GTTTCAAATCCTTATAGGTAGACTAGTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013842959.1\|3061240_3061504_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015589.1\|WP_013842953.1\|3049368_3050427_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176245
NC_015589.1\|WP_013842955.1\|3051537_3053532_-\|GAF-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_015589.1\|WP_013842965.1\|3067287_3069309_-\|CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl\|CDD\|187861
NC_015589.1\|WP_013842963.1\|3065570_3066299_-\|CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|187823
NC_015589.1\|WP_013842954.1\|3050894_3051536_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_015589.1\|WP_013842956.1\|3053503_3054718_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341489
NC_015589.1\|WP_013842949.1\|3046982_3047963_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378341
NC_015589.1\|WP_013842951.1\|3048424_3048583_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842960.1\|3061546_3062539_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_015589.1\|WP_013842952.1\|3048825_3049050_+\|DUF1657-domain-containing-protein	unknown	unknown	gnl\|CDD\|377932
NC_015589.1\|WP_013842961.1\|3062559_3063066_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015589.1\|WP_013842958.1\|3056369_3057431_-\|copper-amine-oxidase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377924
NC_015589.1\|WP_081462027.1\|3070270_3072952_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|225918
NC_015589.1\|WP_013842969.1\|3072965_3074918_-\|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl\|CDD\|224806
NC_015589.1\|WP_143758897.1\|3048105_3048348_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842964.1\|3066295_3067273_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NC_015589.1\|WP_013842957.1\|3055226_3055784_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842962.1\|3063198_3065574_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015589.1\|WP_013842966.1\|3069324_3070077_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013842954.1\|3050894_3051536_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.48191e-72
NC_015589.1\|WP_013842953.1\|3049368_3050427_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176245	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
NC_015589.1\|WP_013842955.1\|3051537_3053532_-\|GAF-domain-containing-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.10935e-38
NC_015589.1\|WP_013842965.1\|3067287_3069309_-\|CRISPR-associated-protein	gnl\|CDD\|187861	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as TM1802 family.	6.00741e-20
NC_015589.1\|WP_013842963.1\|3065570_3066299_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.93928e-22
NC_015589.1\|WP_013842952.1\|3048825_3049050_+\|DUF1657-domain-containing-protein	gnl\|CDD\|377932	pfam07870, DUF1657, Protein of unknown function (DUF1657). This domain appears to be restricted to the Bacillales.	1.47647e-13
NC_015589.1\|WP_013842956.1\|3053503_3054718_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341489	cd17814, Fe-ADH-like, iron-containing alcohol dehydrogenases (Fe-ADH)-like. This family contains iron-containing alcohol dehydrogenase (Fe-ADH) which catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. It is distinct from other alcohol dehydrogenases which contains different protein domains. Proteins of this family have not been characterized.	0
NC_015589.1\|WP_013842949.1\|3046982_3047963_-\|hypothetical-protein	gnl\|CDD\|378341	pfam09989, DUF2229, CoA enzyme activase uncharacterized domain (DUF2229). Members of this family include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.	1.55692e-69
NC_015589.1\|WP_013842960.1\|3061546_3062539_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.1333e-167
NC_015589.1\|WP_013842961.1\|3062559_3063066_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	5.73549e-72
NC_015589.1\|WP_013842969.1\|3072965_3074918_-\|NADH-quinone-oxidoreductase-subunit-NuoF	gnl\|CDD\|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NC_015589.1\|WP_013842958.1\|3056369_3057431_-\|copper-amine-oxidase-like-domain-containing-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	2.74681e-11
NC_015589.1\|WP_081462027.1\|3070270_3072952_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|225918	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only].	0
NC_015589.1\|WP_013842964.1\|3066295_3067273_-\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.53542e-57
NC_015589.1\|WP_013842959.1\|3061240_3061504_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.64913e-31
NC_015589.1\|WP_013842962.1\|3063198_3065574_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	4.99231e-45
NC_015589.1\|WP_013842966.1\|3069324_3070077_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.52966e-35

>NC_015589.1|WP_013842958.1|3056369_3057431_-|copper-amine-oxidase-like-domain-containing-protein
MKKRMITLLLAASMVMMMSVAEASETTKQISITDQDIQILVNNNAISLQANEEPIIYDGRTFVPIRLVSEALGLGVEWVQASKTVKITGNTNTSTDALLQKDAEIQNLKLQIDSLNNTIETLKADDNELSDLEDDLVSDYDYLEDVKIDDITLEGDEDDVNVTIEVNLDDYEDEWADLDDSDIEDYIEDVVYSIQDQLSDDTEVEGEIIDNDSDDVLVEFNKYGDDSLEVTFEDDDYRDGSSDSDVEDVEDSLEGDNFYVGDLTFTITDVSYDDDDEAVTATLETVDDDAASEWDDLSSSTMESDVTDICEDIADTFEDDADVSVDTVTVYFYDENQDSLESFDYYVDDGDLV
>NC_015589.1|WP_013842957.1|3055226_3055784_-|hypothetical-protein
MFKLGKKMTGLALGGMLLAGSIAGSAFADTNAQGTPDQSRDEYYKEFISEFAANLGVGEDQVTAALEATKEQMVQEQLEQGKITQEQADKILAQEGFGFGLGMGRPAGPGGEGKGDMTQNTNFLNEAAAALGMTTDELKAEMESGKTLDEIATEKGITMDQLRQKMPKPQAPTMKDKAEAGNALN
>NC_015589.1|WP_013842956.1|3053503_3054718_-|iron-containing-alcohol-dehydrogenase
MRFIQEFRIPEIIFGRGSIEQVGYCAQRVGAEKVFLVTDPGILKAGWIEAALPFLKREGIHFEIWQELTENPKDFEVEQATRAYLDSQCDAIVAIGGGSPIDVAKAVAVMATHPGTIHDYEGVDKITNPLPPMIMVPSTAGSGADITQFAVIVDSQRSVKMTIVSKSLVPDISITDPLILTTKDPQLTANTGMDVLAHAIEAYVSLAANFLTDSYSLTAIRLISSYLGKSVSSKTNLEAKDAMAKASLLAAIAASNALIGAVHALAHQVGGRFNLPHGMANAILLPHVMEYNFPACIERLADIGEALGQSVDGSNLRQRAKGAIEAVRTLAREVDIAENFTRAGCLYSEEAMNLLSANAAKDACLITNPRDAGIKDIREIFSRAFSRSSVKEGEVHGPQAKDNE
>NC_015589.1|WP_013842955.1|3051537_3053532_-|GAF-domain-containing-sensor-histidine-kinase
MAHRLRTMNNRQSLAGKNQALGMIERLHPPEAKRYPKEVLEKKSALERLSGVKNSSKTYYSELKKSFAQMQKCNINLTQSQKEIEELYELLKKKADQTLAILEVSRAVSNILPFEQILKKTNRLLTQILGPVNCHLLGVQKGSKVIFETLISESPRQNFLFTEESMEELWSRLASRKAPVRLPETSDDKGHLLAVPLMSRGNISGILVIKREDLGHPFTREEVELCVGIAGPVAVAIENRALVETLEKESLRLKTALLSLKGMSDNLAVLNKGVEPLLLAIGQTLMQITDAKYAMMMAHSEEFISIHIPESCEEKEILDSFFSNMLAKRAVLDFSHPYGMRHLAVKSQPNLAFLNRRYGFEDIIIFPMMIRKKILGWLILFFSKYQGDDVCQSILQILGNQTAIALENAKLFEDMMKLKDKAESHYRVACRQKEQLEQKNQELKNMYNILFRAREEQAISLERSRIAGDLHDNVLQILFAIGLHFEWCFNELSSESPVYAKLKFLEDLVHKAVKEIRKVVGEFASMEASYSLQESIESLVRDLNQAGSVRIYVQTSGTMPQLPGVVRNIAFRIVQEALVNALRHASATEIKIYLSYKDRRIEIAVMDNGVGISKNFMETLQGKNKFGLKNMMQRTEFINGTLKIRKLDPKGTEIFAVIPVEGAD
>NC_015589.1|WP_013842954.1|3050894_3051536_-|response-regulator-transcription-factor
MKAISIIIVDDHEIVREGLKLTLQREPDFDVIGEASGGKELLELIRTKQPNVILLDERMPEERGIEICRTLTKLYPEIKTIILTAYAEQEDYIVQAMMAGAKGFLIKNVEIFALQRAIRAVVRGETVIDSQVAACIVNKLKDVPNQHETPSPLTEQQIAIARFVAKGLTNREIAEQLYLSENTIKFHIQNIMRKMEVHNRIVLVAKLLEKGII
>NC_015589.1|WP_013842953.1|3049368_3050427_-|NAD(P)-dependent-alcohol-dehydrogenase
MKGFAMLRIGEVGWIETAKPVAGPYDAICRPLAIAPCTSDIHTVFEGAIGERYNMILGHEAVGEVVEVGSEVKDFIPGDRVVVPAITPDWRTLEAAAGFHQHSGGMLAGWKFSNVKDGSMAELFHVNDADMNLALLPNDILLETAVMIPDMVTTGLHGAENADIQLGAAVAVVGIGPVGLMGVAGAKLSGAGRIIAVGSRPVCIEAARFYGATDIVNYRDGDIVEQILKLTDGKGVDATIIAGGKPEVMAQAVKITKPGGTISNINYHGEGESLPIPRLEWGCGMAHKTIRGGLCPGGRRRMEMLIDLVKYNRLDPGKLVTHVFKGIENCEKALLLMKDKPKDLIKPVVLVD
>NC_015589.1|WP_013842952.1|3048825_3049050_+|DUF1657-domain-containing-protein
MTVGSKMHQTLASLEGAAANLKMFALDTQDQTAKQMFNDMNKQLESMCESLQGRVNYIEKEEPQYKVSQPQQQQ
>NC_015589.1|WP_013842951.1|3048424_3048583_-|hypothetical-protein
MKNKAAKGTSAKTPQVGANVNGSAGKYMMEEMGAELGVTEQGKASKKNKMKS
>NC_015589.1|WP_143758897.1|3048105_3048348_+|hypothetical-protein
MNNSCTTCSSGSPGGISVGSGDRVVELIRVLGIEEANRLLTRDYAFISMYYHPTEQQEVYILAKLKPAAQSRQPIGFIPK
>NC_015589.1|WP_013842949.1|3046982_3047963_-|hypothetical-protein
MPVRVGIPRALLYYYYFPLWKKFLEQLGAEVVVSGRTTKGILTRGVQLCVDEACLPIKLAFGHVQDLVDKGVDVLFLPRMVSVARREYICPKFLGFPDMIRQNVSDLPPLIDTAINVRNKDQDIHRFIHEVGAYFGKGSLQSWLAYRSALATHRQYVGLLEQGLLPEEALSALNGKTPAPGSGQEDLTVAVIGHPYNIYDPFISMNIIHRLRESGARVLTADHISEEKVNQGVGRLPKKLFWTLSRRVTGGALIFDHEQSVDGIIHVAAFACGPDSMTGELIERYIRRNGKVPFMNINLDEHTGEAGIVTRMEAFLDMVRWRRAVV
>NC_015589.1|WP_013842959.1|3061240_3061504_-|CRISPR-associated-endonuclease-Cas2
MFVVLVYDVNQKRVNKVLKKCRQYLNWVQNSVLQGEISEANLTKLKMELERIINKEEDSIILYNLRTTKYFFPEILGLQKGGEGNIL
>NC_015589.1|WP_013842960.1|3061546_3062539_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKTLYIFSNGEIHRKDNTLYFETETGRRFLPVEDTGEIMIFGEVQFNKKLLEFLSQKEIILHYFSHHGYYMGTFYPREHLSSGYMILRQSEHYLDEERRLAIAREFVRGAAKNIRQVLKYYHGREKEVGEFIAAVERLLPSVDDCRDIAALMAIEGNIRDHYYRAFDAIIGHPDFIFQERSRRPPKNYLNTLISFGNSLMYSICLSEIYKTHLDPRIGFLHATNFRRFTLNLDIAEIFKPILIDRLIFFLIGKKMITKQDFEQSTEGILLKDKAKRCFIEELDKKLMTTIQHREIGRSVSYRRMIRLELYKLEKHLMGEKDYTPFIARW
>NC_015589.1|WP_013842961.1|3062559_3063066_-|CRISPR-associated-protein-Cas4
MPEKEIGVSGTLVWYYYICPREVWLISHQINPDQDNDNVSLGRFIGENTYQREKKEISVGGSKIDVFHMENGQMVIGEVKKSSKYKESARMQLAFYLSELKERGIEARGELRFPKEKVREEVLMDEQTEQELERVRREILRIVYLDKPPQPRKIKFCKNCAYAEFCWS
>NC_015589.1|WP_013842962.1|3063198_3065574_-|CRISPR-associated-helicase/endonuclease-Cas3
MSQGHSSLRSHPHLLLHEHIDQVRIAMRALQQLHSSRTVTFRIQDIMERTAVFHDLGKATDFFQEYIKDPESYKGNSSDKAHTGLSVFLTLIIAKEQEWDVRDALMVVAAISGHHSRLPTFSEQRVGFVDETKHAIERFANGSNVSTIQRQISSIDFEILSSEVNLEFNEIKTVRDSPQEITLLIRKALKFLNSKLIKENKNLYLQEAIAFRLKCQFIYSIMLEADKALLAVSDPAIYLMRPVNQWQSKWIDKRIGKPDVTDTNCLRQKIRNEVVEVIANKRDSRIFNLTAPTGAGKTLLAATWALKLRENTDNYWHPPKIIVVLPFLSVIDQTVNEYKKLLRVGGVENDSEWLLTSHSLSDRVYDSELTTGDNSFLVDTWRNDIIITTYDQFLFSLIEPYAKYQMRFHNLCDALIIMDEVQSLPCKLWQPLDEIFEQLTLVGNSKLLLMSATLPPFVKNAEPLLKNPNLYFAQCKRYCLRLRLNTHISLDEFCLELEERLDDWFTQRLRVLLTFNTRKSARKVRDYIDDWRKGKDEFADIPLFFISADVTPKNRLQSIDKIKEGNPCIVVSTQCIEAGVDIDMDLIIRDFAPLDCLIQIAGRCNREGGKETRGIIEIIDIVDEGKRYSEMIYDEVHLSVTRRLLKEYKEVLEEDILTLTDCYFKELSVRKDTGFIHLERFARWQDDVSIRELLRGKEKQQYTFLVIEQDPTLYQDMCEIMEIKNIWERREAWRRVAGRMAMVSVNVFVKPGFYPQQIAYEFKINTGLWILKDGYYSDDKGLVVEGETMIF
>NC_015589.1|WP_013842963.1|3065570_3066299_-|CRISPR-associated-protein-Cas5
MKNAIQFRLSGRFGHFLKAEAGTSALSYPVPTRTVLLGIVGAVLGLEKDTPQELLEPVQFAISGKSPKTHWHKAKFRKDPPTPLQHIIKRTQKQDANTKLEQATLIVQEWLINPCYNVWAILPDNYHVEFEERIKDRRWHFQPCLGVSEMLAEIEYIDTEPVQKLDPAVYAVSNVIRQKQANINFQELYDNSLTIQLLRMPRTVTPNRIFTHDNYLFEANARPIMIRTSDAYKIGKRVVMFL
>NC_015589.1|WP_013842964.1|3066295_3067273_-|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MTLNKTKTLSGRREFLFLYDIKMGNPNGDPDENRPRVLPDGTYYVTDVRMKRFVRDFLKMRGFDILVDTIEGRTTNLTGRVVHYLNTTGNKKVEGKALVDILLNAFIDARLFGSSFAFKKEKDDNWDPKPEPKTMTGAVQLNMGEILHKAESVDIHGTTTFGSDELKTQGTFTVYYGLRYALIGFSGIANEHSARISRMSDEDYDLFLKALWHGVRANANTRTKVGQIPHLLISIEYKADEEFQFGRLHEYVRLIAATGKEEKVWASPEDYKVDLSKLHERIQGQQKRIERIRYAKSTDISLLEDIPVDWRLLEVEELLKDVGSV
>NC_015589.1|WP_013842965.1|3067287_3069309_-|CRISPR-associated-protein
MLVGMRTLGLDYLVQELCNTNIPVDPENWYLSLRNNEPHKLFSLLVEDSGRIEKVYVIEKDAEDVVSVSVQDVTVSNSASGCTADKLPFIKPSGSQSAQVGPVIKRSYSKDKGAGPSEKILETTINYFKEIADSKKPWSRYFQDIIMLLEYKEIKFLDGTKVDWAENKYKNLLACVVDKIGPQSGTVFLTIKTPDGKYPGEQLVYIKYLLKEKLAGERYVTSSSPAKENQMCYLCNTSNVLVFPNGLKGAGINIKNPDRAGAFPGIDVKQAWKGYSLCGACADLLYIYKNHVLKKRGPQKDKIPYTAKIAGENALVVPIFLPGTLPETRIEVLEQVTRYIQSMGDNVTFDEDWLLDMLKEEKSILNLSILWVDIGQNIENVVGTIEHVLPSRLRELSEINTESLFWKHALFPAIQLDNSKINLTPKLSLQALKPLFKRPGGKRAKSVNASQRLFQLKRLLAENVYHGNLMEKDRFWGEFLLTARWYWLEAIEKTDGQYGLLYEGLGKKGPYLTAAGWIKYVNWWLYYFKKVGIFRMETSYFEPTMLELRPYFGPESGIDSPDKAYAFLLGVLYGKVLQVQGAKGVNVGANALTWLKRLTLKGRDLPELYNKIRDKSFAYDIEGNEKVRKLVAEIGRLGINLGDNICLDEVQTSYYLLLGQSMTETIIPSIKNK
>NC_015589.1|WP_013842966.1|3069324_3070077_-|CRISPR-associated-endoribonuclease-Cas6
MHLFITLTPQKELELPVHYNHLVQAAVYGTIDPELAVFLHDKGYESGSRRFKLFTFSRVSGRFEANRDKNTLRFTGDVSLTLSSPVNDFCQSIANGFLTRGQIRLGSHFAEVKAVTVRQFTVRGEKVLLRTLSPVVAYSTMRRLDGRKYTCYFQPGDPDYSGLIENNLRKKYQAFFNREAPPGEVKVRKTGNLKMNLVNYKGTIIKGYSGLMELTGPTELLQMAVDGGLGGKNAQGFGCVEMVVSGNEQF
>NC_015589.1|WP_081462027.1|3070270_3072952_-|formate-dehydrogenase-subunit-alpha
MSEIALTINGRPVSVPKGSTILEAAGKLGLAIPTFCHDPELSRYGGCRICVVEVAGWGSLPASCVTEIRPGMEVFTDSPRVLEARRTILELLLANHPEDCMTCEKCGACALQDYAYRYGVRKGRFAGDARSLPLDDSNPFIVRDMNKCILCGKCVRVCAEVVGRSAVDFAFRGFQARVAAPLDGGLQDSDCVFCGSCLEVCPVGALGEKQMAGQGRRWDLTAVTTTCPYCGVGCQLNLQVKEGRVVGVTAARSGINGKHLCVKGRFGYRFIHHPERLTSPLIRKEGQLREAGWNEALEEIARRLKETISNHGGDSVGILASARITNEENYLLNKLARAVIGTNNIDHCARLUHAPTVAGLAAALGSGAMTNSIDEIAGADFILAIGTNTTEAHPIIAHRIRRAVQQGAQLVVLDPRKTELAELAGQHLQLHPGTDIALLNSMVQVILEEELWNREFVQARCEGLEELREGVRAYTPEYAEEVTGIPAQTIRETARGYARAEKASLLYTMGLTQHVSGTDNVLAAANLVLLCGQIGQPSTGINPLRGQNNVQGACDMGALPNVFTGYQPVTDEECRRKFSRAWGVSLDGKPGLTATEMIEAASQGKIKAMYIAGENPVLSDADANHVEKALKNLDFLVVQDLFLTETAKLADVILPAASFAEKDGTFTNTERRVQRVRKAVEPVNGAKADWEILCSLSAALGYPMNYNSPREIFEEMASLTPSYGGITHDRLEQGGIQWPCTSREHSGTPYLHKETFSRGKGKFHPVQYLPPAELPDPQYPLLLNTGRRLQHYHTGTMTLRTGLVEVCGSEKLDIHAGDAEALDLCTGDKVRVISRRGEVQMSVNISATVPQGMVFASFHFPEAAINKLTNPAHCPVSKIPEFKICAVRIEKIV
>NC_015589.1|WP_013842969.1|3072965_3074918_-|NADH-quinone-oxidoreductase-subunit-NuoF
MQNIMEACCRQCTHRPGSPCRRYVECRTMGPFCHTDKACREAREQFAGLVRVDREDGLKQMIVCGGTGCTSSGSGRLAEQLTEAIEKAGLTGTVRVKRTSCHGFCENGPIVHIKPEGVFYTRVQPEDAKEIVDEHLVKGKIIDRLTFQEPTSGIHYPHFQEIPFYAGQTRLLLANCGNIDPEQIGDYVAAGGYHSLVKVLQGLPPEQVIEEIQQSGLRGRGGAGFPTGRKWASARKAEGTRKFIICNADEGDPGAFMDRSVLEGDPHAVLEGMLIAGYAVGAAMGYIYCRAEYPLAIRRLKTAIQQAREYGLLGSNILNSGFDFDIILKEGAGAFVCGEGTALQASIEGNRGMPRVKPPRSTEKGLWNQPTVLNNVETLANVPLIIRLGAEEYKKIGTEGSPGTKIFALSGAVTNSGLVEVPMGVPLRDIIFGTGGGIRGGKEFKAVQLGGPSGGCLTRQHLDLPVDFDSLSSAGATIGSGGMVVMDEETCMVDVARFFLAFTQAESCGKCTPCREGTKRMLEILERMCKGSATLEDLDNLERLCRVVKNTSLCGLGQACPNPVLSTLKYFREEYLAHIVDKRCPAGVCSELVSYRIDEEKCRGCGLCTKICPVQAIHGEKKQPHVIDHSECIRCGSCLTRCKFKAVVRS

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Crispr_ID: NC_015589_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_11

3091332-3093024

Orphan

Consensus_repeat	Method
GTTTCAATCCCTTATAGGTAGGCTAAAAAC	PILER-CR
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CRISPRCasFinder
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CRT

25 spacers

The CRISPR arrays of NC_015589_11

>merge|NC_015589|11|3091332-3093024|PILER-CR,CRISPRCasFinder,CRT
GTTTTTAGCCTACCTATAAGGGATTGAAACGAGGGAGAACACAATGGACTGGAGCGGACAGAAAAGTTTTTAGCCTACCTATAAGGGATTGAAACTCCGTTCCTAAACAACATAGGTCTTCCTTTTTTAATGCGTTTTTAGCCTACCTATAAGGGATTGAAACTCTTCTCCAATCGCTCCATTTCTTTTTCTAACTCCGTTTTTAGCCTACCTATAAGGGATTGAAACAGACGGGAACCATCGAATAGAGTAGCATCTACCGCCGGGGTTTTTAGCCTACCTATAAGGGATTGAAACGCTGTTCATCAGTTAGGGTATTGAGAGCTGCGATTTCCGTTTTTAGCCTACCTATAAGGGATTGAAACTTGCTTAAACTGGATGAAAAAACAGGGTCTATTGAGTTTTTAGCCTACCTATAAGGGATTGAAACCAGATGTCATATCCGACTATGTCAGACCACCCAAAACGTTTTTAGCCTACCTATAAGGGATTGAAACCAGTCAAATCAAACTCCACCACATCATCAAACTTTCCGTTTTTAGCCTACCTATAAGGGATTGAAACTTGTTTCGCCAACCACGTACTGGAAACGAGCATCGTGGGTTTTTAGCCTACCTATAAGGGATTGAAACTCCGAGGCGGGAAGCTATATGGTACGTCAATCAGAGTTTTTAGCCTACCTATAAGGGATTGAAACCTAGATCGTCCTCATCGTCTGTGGCATCAATTTCAGTTTTTAGCCTACCTATAAGGGATTGAAACATGGTTATGTTTATATCGAGTCCCCAAGTAATACTCGTCGTTTTTAGCCTACCTATAAGGGATTGAAACGTGGTTTCTTTGCTTTACGCCATTGCTCAATAATTTGTTTTTAGCCTACCTATAAGGGATTGAAACATCTTTTCGGCGTCCGTCTCATACTGCCATCGGTCAGTTTTTAGCCTACCTATAAGGGATTGAAACTACATGATTGGGATGATTATGCCGGAAAACTTATGGTTTTTAGCCTACCTATAAGGGATTGAAACTCCGTTGGTATAATTAGCTTGGTTGCACCACATGCAACGTTTTTAGCCTACCTATAAGGGATTGAAACTTGAAAGCTCTCTTAATACCTCAACAATACTCTTATTGTTTTTAGCCTACCTATAAGGGATTGAAACATCAGATTGGCTTGATCTTTCATTTCCACCCTCCCTGTTTTTAGCCTACCTATAAGGGATTGAAACTACCGTAATCAACGTTTATAGACTGACCGCCTTGGTCATGTTTTTAGCCTACCTATAAGGGATTGAAACAGAAGTCTATCCCCATATTAAAGATGGATGAGGAAAGTTTTTAGCCTACCTATAAGGGATTGAAACTTTCTTCTCGGCATCATCCATCCCTCCCTCGGAAGTTTTTAGCCTACCTATAAGGGATTGAAACACTTCTACCTCGACATTCACTACAATGCCGGGGTACTGTTTTTAGCCTACCTATAAGGGATTGAAACTTGGCAAGAATTGCTTGTTTTCCTCTGTTTCCGAAGTTTTTAGCCTACCTATAAGGGATTGAAACAGATATGGCAACTGCAAAAAGTATGGCTGTCCGTAAATGTTTTTAGCCTACCTATAAGGGATTGAAACTGGTTTCAACCCTTGATGGTCGCTTCTTAAAAAACGTTTTTAGCCTACCTATAAGGAGTAAGAAC

>NC_015589|11|10|3091332-3092959|PILER-CR
GTTTTTAGCCTACCTATAAGGGATTGAAAC	GAGGGAGAACACAATGGACTGGAGCGGACAGAAAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCCGTTCCTAAACAACATAGGTCTTCCTTTTTTAATGC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCTTCTCCAATCGCTCCATTTCTTTTTCTAACTCC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	AGACGGGAACCATCGAATAGAGTAGCATCTACCGCCGGG
GTTTTTAGCCTACCTATAAGGGATTGAAAC	GCTGTTCATCAGTTAGGGTATTGAGAGCTGCGATTTCC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGCTTAAACTGGATGAAAAAACAGGGTCTATTGA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CAGATGTCATATCCGACTATGTCAGACCACCCAAAAC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CAGTCAAATCAAACTCCACCACATCATCAAACTTTCC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGTTTCGCCAACCACGTACTGGAAACGAGCATCGTGG
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCCGAGGCGGGAAGCTATATGGTACGTCAATCAGA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CTAGATCGTCCTCATCGTCTGTGGCATCAATTTCA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ATGGTTATGTTTATATCGAGTCCCCAAGTAATACTCGTC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	GTGGTTTCTTTGCTTTACGCCATTGCTCAATAATTT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ATCTTTTCGGCGTCCGTCTCATACTGCCATCGGTCA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TACATGATTGGGATGATTATGCCGGAAAACTTATG
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCCGTTGGTATAATTAGCTTGGTTGCACCACATGCAAC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGAAAGCTCTCTTAATACCTCAACAATACTCTTATT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ATCAGATTGGCTTGATCTTTCATTTCCACCCTCCCT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TACCGTAATCAACGTTTATAGACTGACCGCCTTGGTCAT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	AGAAGTCTATCCCCATATTAAAGATGGATGAGGAAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTTCTTCTCGGCATCATCCATCCCTCCCTCGGAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ACTTCTACCTCGACATTCACTACAATGCCGGGGTACT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGGCAAGAATTGCTTGTTTTCCTCTGTTTCCGAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	AGATATGGCAACTGCAAAAAGTATGGCTGTCCGTAAAT
GTTTTTAGCCTACCTATAAGGGATTGAAAC

>NC_015589|11|11|3091332-3093024|CRISPRCasFinder
GTTTTTAGCCTACCTATAAGGGATTGAAAC	GAGGGAGAACACAATGGACTGGAGCGGACAGAAAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCCGTTCCTAAACAACATAGGTCTTCCTTTTTTAATGC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCTTCTCCAATCGCTCCATTTCTTTTTCTAACTCC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	AGACGGGAACCATCGAATAGAGTAGCATCTACCGCCGGG
GTTTTTAGCCTACCTATAAGGGATTGAAAC	GCTGTTCATCAGTTAGGGTATTGAGAGCTGCGATTTCC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGCTTAAACTGGATGAAAAAACAGGGTCTATTGA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CAGATGTCATATCCGACTATGTCAGACCACCCAAAAC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CAGTCAAATCAAACTCCACCACATCATCAAACTTTCC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGTTTCGCCAACCACGTACTGGAAACGAGCATCGTGG
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCCGAGGCGGGAAGCTATATGGTACGTCAATCAGA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CTAGATCGTCCTCATCGTCTGTGGCATCAATTTCA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ATGGTTATGTTTATATCGAGTCCCCAAGTAATACTCGTC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	GTGGTTTCTTTGCTTTACGCCATTGCTCAATAATTT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ATCTTTTCGGCGTCCGTCTCATACTGCCATCGGTCA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TACATGATTGGGATGATTATGCCGGAAAACTTATG
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCCGTTGGTATAATTAGCTTGGTTGCACCACATGCAAC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGAAAGCTCTCTTAATACCTCAACAATACTCTTATT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ATCAGATTGGCTTGATCTTTCATTTCCACCCTCCCT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TACCGTAATCAACGTTTATAGACTGACCGCCTTGGTCAT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	AGAAGTCTATCCCCATATTAAAGATGGATGAGGAAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTTCTTCTCGGCATCATCCATCCCTCCCTCGGAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ACTTCTACCTCGACATTCACTACAATGCCGGGGTACT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGGCAAGAATTGCTTGTTTTCCTCTGTTTCCGAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	AGATATGGCAACTGCAAAAAGTATGGCTGTCCGTAAAT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TGGTTTCAACCCTTGATGGTCGCTTCTTAAAAAAC
GTTTTTAGCCTACCTATAAGGAGTAAGAAC

>NC_015589|11|9|3091332-3093024|CRT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	GAGGGAGAACACAATGGACTGGAGCGGACAGAAAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCCGTTCCTAAACAACATAGGTCTTCCTTTTTTAATGC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCTTCTCCAATCGCTCCATTTCTTTTTCTAACTCC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	AGACGGGAACCATCGAATAGAGTAGCATCTACCGCCGGG
GTTTTTAGCCTACCTATAAGGGATTGAAAC	GCTGTTCATCAGTTAGGGTATTGAGAGCTGCGATTTCC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGCTTAAACTGGATGAAAAAACAGGGTCTATTGA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CAGATGTCATATCCGACTATGTCAGACCACCCAAAAC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CAGTCAAATCAAACTCCACCACATCATCAAACTTTCC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGTTTCGCCAACCACGTACTGGAAACGAGCATCGTGG
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCCGAGGCGGGAAGCTATATGGTACGTCAATCAGA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	CTAGATCGTCCTCATCGTCTGTGGCATCAATTTCA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ATGGTTATGTTTATATCGAGTCCCCAAGTAATACTCGTC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	GTGGTTTCTTTGCTTTACGCCATTGCTCAATAATTT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ATCTTTTCGGCGTCCGTCTCATACTGCCATCGGTCA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TACATGATTGGGATGATTATGCCGGAAAACTTATG
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TCCGTTGGTATAATTAGCTTGGTTGCACCACATGCAAC
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGAAAGCTCTCTTAATACCTCAACAATACTCTTATT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ATCAGATTGGCTTGATCTTTCATTTCCACCCTCCCT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TACCGTAATCAACGTTTATAGACTGACCGCCTTGGTCAT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	AGAAGTCTATCCCCATATTAAAGATGGATGAGGAAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTTCTTCTCGGCATCATCCATCCCTCCCTCGGAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	ACTTCTACCTCGACATTCACTACAATGCCGGGGTACT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TTGGCAAGAATTGCTTGTTTTCCTCTGTTTCCGAA
GTTTTTAGCCTACCTATAAGGGATTGAAAC	AGATATGGCAACTGCAAAAAGTATGGCTGTCCGTAAAT
GTTTTTAGCCTACCTATAAGGGATTGAAAC	TGGTTTCAACCCTTGATGGTCGCTTCTTAAAAAAC
GTTTTTAGCCTACCTATAAGGAGTAAGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013842991.1\|3097691_3098066_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NC_015589.1\|WP_013842993.1\|3102102_3103431_-\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180387
NC_015589.1\|WP_013842977.1\|3083134_3083734_+\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|133000
NC_015589.1\|WP_013842978.1\|3083946_3085470_-\|spore-germination-protein	unknown	unknown	gnl\|CDD\|377020
NC_015589.1\|WP_013842984.1\|3088796_3089243_-\|anti-sigma-F-factor	unknown	unknown	gnl\|CDD\|179626
NC_015589.1\|WP_041275828.1\|3103457_3104636_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NC_015589.1\|WP_013842990.1\|3096354_3097524_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NC_015589.1\|WP_013842988.1\|3095382_3095811_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_015589.1\|WP_013842981.1\|3086402_3087416_-\|stage-V-sporulation-protein-AD	unknown	unknown	gnl\|CDD\|236230
NC_015589.1\|WP_013842996.1\|3105695_3105959_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842989.1\|3095996_3096281_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842987.1\|3093233_3093872_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377924
NC_015589.1\|WP_013842979.1\|3085441_3086026_-\|stage-V-sporulation-protein-AE	unknown	unknown	gnl\|CDD\|379467
NC_015589.1\|WP_013842986.1\|3089728_3090976_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NC_015589.1\|WP_013842995.1\|3104671_3105562_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|274043
NC_015589.1\|WP_013842985.1\|3089256_3089595_-\|anti-sigma-F-factor-antagonist	unknown	unknown	gnl\|CDD\|131932
NC_015589.1\|WP_013842983.1\|3087997_3088780_-\|RNA-polymerase-sporulation-sigma-factor-SigF	unknown	unknown	gnl\|CDD\|180137
NC_015589.1\|WP_013842992.1\|3098078_3099461_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226657
NC_015589.1\|WP_013842982.1\|3087431_3087899_-\|stage-V-sporulation-protein-AC	unknown	unknown	gnl\|CDD\|131885
NC_015589.1\|WP_013842980.1\|3086035_3086389_-\|stage-V-sporulation-protein-AE	unknown	unknown	gnl\|CDD\|377146

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013842991.1\|3097691_3098066_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	5.60572e-31
NC_015589.1\|WP_013842993.1\|3102102_3103431_-\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|180387	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed.	0
NC_015589.1\|WP_013842977.1\|3083134_3083734_+\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|133000	cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.	6.27812e-63
NC_015589.1\|WP_013842978.1\|3083946_3085470_-\|spore-germination-protein	gnl\|CDD\|377020	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein.	0
NC_015589.1\|WP_013842984.1\|3088796_3089243_-\|anti-sigma-F-factor	gnl\|CDD\|179626	PRK03660, PRK03660, anti-sigma F factor; Provisional.	2.38071e-78
NC_015589.1\|WP_013842990.1\|3096354_3097524_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.73164e-97
NC_015589.1\|WP_013842988.1\|3095382_3095811_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.40831e-28
NC_015589.1\|WP_013842981.1\|3086402_3087416_-\|stage-V-sporulation-protein-AD	gnl\|CDD\|236230	PRK08304, PRK08304, stage V sporulation protein AD; Validated.	0
NC_015589.1\|WP_041275828.1\|3103457_3104636_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NC_015589.1\|WP_013842987.1\|3093233_3093872_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	3.596e-25
NC_015589.1\|WP_013842979.1\|3085441_3086026_-\|stage-V-sporulation-protein-AE	gnl\|CDD\|379467	pfam14097, SpoVAE, Stage V sporulation protein AE1. Members of this family are all described as putative stage V sporulation protein AE, although this could not be confirmed. Proteins in this family are approximately 190 amino acids in length.	7.28028e-106
NC_015589.1\|WP_013842986.1\|3089728_3090976_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.34102e-118
NC_015589.1\|WP_013842995.1\|3104671_3105562_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	8.3797e-150
NC_015589.1\|WP_013842985.1\|3089256_3089595_-\|anti-sigma-F-factor-antagonist	gnl\|CDD\|131932	TIGR02886, Anti-sigma_F_factor_antagonist, anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes [Regulatory functions, Protein interactions, Cellular processes, Sporulation and germination].	8.33642e-45
NC_015589.1\|WP_013842983.1\|3087997_3088780_-\|RNA-polymerase-sporulation-sigma-factor-SigF	gnl\|CDD\|180137	PRK05572, PRK05572, RNA polymerase sporulation sigma factor, SigF/SigG family.	4.0895e-131
NC_015589.1\|WP_013842992.1\|3098078_3099461_+\|hypothetical-protein	gnl\|CDD\|226657	COG4194, COG4194, Predicted membrane protein [General function prediction only].	4.70793e-14
NC_015589.1\|WP_013842982.1\|3087431_3087899_-\|stage-V-sporulation-protein-AC	gnl\|CDD\|131885	TIGR02838, stage_V_sporulation_protein_AC, stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect. [Cellular processes, Sporulation and germination].	5.09432e-59
NC_015589.1\|WP_013842980.1\|3086035_3086389_-\|stage-V-sporulation-protein-AE	gnl\|CDD\|377146	pfam03862, SpoVAC_SpoVAEB, SpoVAC/SpoVAEB sporulation membrane protein. Members of this family are all transcribed from the spoVA operon. Bacillus and Clostridium are two well studied endospore forming bacteria. Spore formation provides a resistance mechanism in response to extreme or unfavourable environmental conditions such as heat, radiation, and chemical agents or nutrient deprivation. The reverse process termed germination takes place where spores develop into growing cells in response to nutrient availability or stress reduction. Nutrient germinant receptors (GRs) and the SpoVA proteins are important players in the germination process. In B.subtilis the SpoVAC and SpoVAEB, belonging to this domain family, are predicted to be membrane proteins, with two to five membrane spanning. Biophysical and biochemical studies suggest that SpoVAC acts as a mechano-sensitive channel with properties that would allow the release of Ca-DPA (dipicolinic acid) and amino acids during germination of the spore. The release of Ca-DPA is a crucial event during spore germination. When expressed in E.coli SpoVAC provides protection against osmotic downshift. Furthermore, SpoVAC acts as channel that facilitates the efflux down the concentration gradient of osmolytes up to a mass of at least 600 Da. Another conserved SpoVA protein in all spore-forming bacteria is SpoVAEb, which appears to be an integral membrane protein with no known function.	7.99566e-42

>NC_015589.1|WP_013842986.1|3089728_3090976_-|D-alanyl-D-alanine-carboxypeptidase
MKPRIKSTVFILLCLSLAFTVCLPSALAAPETQKPPAGQQAPDLNGPKPAPEAAGEEKKSFPLETTAETAVLMDYSSGQILLDKDMHSSRPMASVTKLMTMLLICEAEAQGKIKTTDKIVTSEHAASMGGSQIFLEPGEELPMKEMLISIATGSANDASVAMSEAIAGSEEAFVELMNQKAQELGLKNTHFSNPTGLPVENHYTSAYDMAQVLRQCLRYPLFREVSSIYEHDLRGGDFKLWNTNKLLKWYPGADAGKTGWTNEAKYCLAASAKKDGLRLVSVVLGCPMPRTHFQETIKLFNYGFAKYKAVNLAEAGQVIGEIAVDKGEVEKLKIATADPVGLVVLKGQEKTVQGKVQLPDKIEAPVKKGQVIGQYLVMKDGQEVLKVNLVAQKEVQKASAFRLFNKVLDRVYGMD
>NC_015589.1|WP_013842985.1|3089256_3089595_-|anti-sigma-F-factor-antagonist
MQLDMEHRQDTLVVRLGGELDLGVADKLRLTLDKELFQGKIRHLIINLSRVTFMDSSGLGVILGRYKRLTQQGGKVVLVGAQPPVKRVLELSGLLQIMEDFPDEAKALSKIV
>NC_015589.1|WP_013842984.1|3088796_3089243_-|anti-sigma-F-factor
MQVLNRFSLEFYSIPENVAFARVAVAAFASQLDCTLPELEEIKVAVSEAVGNAIIHGYRNKPDKIVYLTVTIYKEGLEIQIKDCGNGIADIKLAMQPAFSTDPERMGLGFVFMQSFSDRINVESQKGVGTTITMFKNIGIRGARARAN
>NC_015589.1|WP_013842983.1|3087997_3088780_-|RNA-polymerase-sporulation-sigma-factor-SigF
MSSTRLLEMNLPRFPLLSDKEMRSLLKKAQAGDADARERLVNCNLKLVFNLVQRFNNRGYELEDLFQIGCIGLMKAIDKFDLSYDVKFSTYAVPMIIGEIRRFLRDDNPVKVSRSLKETAYKIQQARDRLTARLGRDPSINEIAKELGFCREEVVSALEAAQTPTSIYETLHQDDGDPIYILDQLSSEEDGDSPWLEKLAVKQLLVELPERDRQIILWRFFEDKTQSEVALRLGLSQVQVSRLERQALRKLKELLTPTGS
>NC_015589.1|WP_013842982.1|3087431_3087899_-|stage-V-sporulation-protein-AC
MDKIHSFDPSEMNQKEYQKLVQEVNPKPTLLKNVVLAFLFGGAICAGGQLLTDFFTGRGLGLQDAGLATSAVLVFVAAFLTGLGLYDEIAKYAGAGTIVPITGFANSMVAPAMEFRSEGMVFGVGARLFTIAGPVLVFGIVTAWVAGMISYIISL
>NC_015589.1|WP_013842981.1|3086402_3087416_-|stage-V-sporulation-protein-AD
MGAAKKIGRQTIAFANPPVILSAASIVGPKEGEGPLKDYFDRIAGDMYYGEKTWEKAEQKILQETMELALSKAGLKPADMDFLLAGDLSNQIIAANFTARSLGIPFMGLYGACSTMYEGLALGSMLIDGGFARYVLLGACSHYATAERQYRFPTEQGVQRPMSAQWTVTGSGAVVLGKTGQGPRVTHAIIGRVVDYGEGDPNNMGAAMAPAAADTIVRHLKDIDQPPETYELIITGDLGKYGRELVIRLAEQQGIVLGTNYQDCGVLIFDESQDTHAGGSGCACSATVTCGYLLKEMKAGRLKNFFGLGTGALLSPCSCQQGESIPGIGHGVVVQAN
>NC_015589.1|WP_013842980.1|3086035_3086389_-|stage-V-sporulation-protein-AE
MLMKAFLVGGAICVIGQLLMDLTSYKITPGHILVGFVTTGAIFSALGFYQPLVDFAGAGATVPLSGFGHLLAQGAIEEVRKDGFLGAFKGALSAAAGGITAAVVFGYLAALVFRPKG
>NC_015589.1|WP_013842979.1|3085441_3086026_-|stage-V-sporulation-protein-AE
MEKRNVILVTDGDLIARRALEVAARNVGARCISMSAGNPTFLTGSQLVELIKSAVHDPVVVMFDDKGAEGQGLGEKALLEVYNHPEINILGVLAVASNSYTPDGARVDVSVTSEGQVLKGSVNKFGKFMRKKEIQGDTVEILNDLEVPVVVGIGDIGKMNGADDYHYGAKVTTRALLEIINRSGFNAGSTGESP
>NC_015589.1|WP_013842978.1|3083946_3085470_-|spore-germination-protein
MPEVLEKAPKVYSSLNRNMEYLNDVLGYGKSFDIVLRQFNVAGKDIAMYFVNGFVKDEVMSLILRNLDELRRGEVTPNSLKKLFHEHINHIQVEAVDSLEKVIDGVLSGPLAMLIDGEEQALVIDLRQYPARAPQEPDLEKVVRGSRDGFVETLVQNCLLLRRRLRDPRLRNEVMQVGTRSKTDVVISYISDIANPDLVQKVKDNLQKVKIDGIPMAEKAVEELIQPGKYGNLFPKVRFTERPDVAAAHLLEGRILVMVDTSPSIIITPCTLWDHFQAAEEYRQGPPVGIYVRWVRYLGLAIALFLLPLWFLAAVQPELLPPALQFIGPNKPGKIPLIGQFVLAELAIDMIRLATIHTPSALATATGIIAALLVGDMAVAVGLFNSEVVMYTAIAAVATFLIPSYEMSWAVRIVRLFLLLITAAFRLPGLIVGVLLVLVYLMRTRSLGVPYLWPLIPFNAKEMLAVLIRTPVSVRNIRPAIFHPLNKVRQAAPEPARKPDRKKTGRE
>NC_015589.1|WP_013842977.1|3083134_3083734_+|molybdenum-cofactor-guanylyltransferase
MYKKERYSAVILAGGKSSRMKTNKAMLNLHGKSLLQIIVDQLTPFFEEILLISNDPDYYRQFGLPIYGDLFANRGPLAGIHAGLEHISGKGAFFIACDMPFFSPLLAGELLAELGQYQVVVPQKGRFLQPLHAAYRKDCLPFIEQTLYSERAKIISFFDLVQVKYYDMNQHPEYNWDRIFFNVNTPEEYRSALLLKEQG
>NC_015589.1|WP_013842987.1|3093233_3093872_-|copper-amine-oxidase-N-terminal-domain-containing-protein
MNRVIIILTSIFIMSFCASANAAPEIKININGRYVNFATDAGKPYLDENNRTQVPLKATMEEAGAIVKWDGENQVAIVEKNNTVIKVPIGKSYIFVDDKQVANDTQAVVKNGRTYLPISVVLKNLAFTVKWDDATQTVYAVHYGDLVKEDEQLVDEMWENAETAQDVINSIDATIDHERFQDQITELTERQVLNNLFNEPIKINIPKEDDPN
>NC_015589.1|WP_013842988.1|3095382_3095811_+|MarR-family-transcriptional-regulator
MEFKLDNSLGFILNRSNTRMKHTLLHHFKEYNVTPEQWAILNRLWEKEGLSPKELAELTSKDQPTTVRILSRLEKKGYITRQVNPEDNRAYLISLTSEGRAIKDKLFPLAFEALNKAIKGIDKEELEVTRAVLNKVFKNLES
>NC_015589.1|WP_013842989.1|3095996_3096281_+|hypothetical-protein
MRNDLVFKNSYDAHMAAYFDPECLQRSGYQLKKFVDGYRYYPINKKQAYVIRNSQVVELGQHVSTYYWSGESKFPNHFKCLIIPFSHTIKQKQL
>NC_015589.1|WP_013842990.1|3096354_3097524_+|MFS-transporter
MSQRQALWTKDFVLICLTSLFMFTSFYFLITTLPMYVTDVLKGNESNVGYIVGVLTITAVLVRPISGYLLDTMGRKSVVVFALVAFVLVTIAYNLATSLLILFLLRAIHGFSWGFTSTGAGTIASDIVPAARRGEGMGYYGLAGTLAMAVGPVLSIYILGLYGFNTLFTAGSIIAALSLACLLGIKGSEVKTDKKNTKISLNSFLEPRVYSLSMVLFFVNLTYGAIVSFITLYAKELNIANAGIFFMVYGVALLFVRPYAGKIFDKHGPNQIMLIGFISLAASFIVLSIATGSFMFILSAIIMGIGFGIIQPTLQAMAINRVEPYRRGAANGTIFTALDLGIGIGSILLGLVSNQFGLSYLYLICGFILIIPMVVFFTKDAKKPSNQLG
>NC_015589.1|WP_013842991.1|3097691_3098066_+|GntR-family-transcriptional-regulator
MILRIDMTSDIPIYQQIRNEIVFGVAKGHMKAGDLLPTVRQLAADIGVNPMTVNKAYALLREEGIIVIDRRHGAQISNRGMNGNAFDANFDQQVELLISEARMKGASKQDIQKHISDIIDRVYE
>NC_015589.1|WP_013842992.1|3098078_3099461_+|hypothetical-protein
MLLSLLIIAWLSFGTMAFVALFYKDHHDRQILGVVLSQEHAKSPQVQATIQDFKRACYTVLLLSVGLSLFMLIQTIRPYAEFYMLFLVMANLFANWFIIHRFQQRLQSIKRKNQWVYPQSRIIRVDLNVSKEKGKSAVTSIWIWLFLLISFIPTAFLIFHPQMQESYPIGFSLIGPLCQLSTIYFYYQMKNRQASVLSDNTEINKACARTEERINTMSATLSSLAMLVFWILFNISIIYIKNDMFTALSVVILVSFLLAIANWQQRKIRAAQHYFFGEVLKDDSGIYEQESTWKWGFYYNPNDPRIIVPKRIANMGWTINIGRPAGKAIGAGVLVFFLGIIGIVAYGGFKDYTITENNSKIMIDAAMYDISLEKNQVISVSITDKIPKGTRTNGYGGVNKSFGHFSIEGFGKCMLYIYNDVDKYIVLKLEGDDPGYVIVNDKSQDKTEQLYQTIKQWLEE
>NC_015589.1|WP_013842993.1|3102102_3103431_-|pyrimidine-nucleoside-phosphorylase
MRMYDIILKKRRGGTLSAAEIDFFIQGYTRGDVPDYQAAALTMAIFFQGLEPEETADLTLAMARSGDRADLSSLPGVKVDKHSTGGVGDKTTLVLGPLVAAAGVPVAKMSGRGLGHTGGTIDKLEAIPGFRVSMDNRSFLEQVRRINLAVVAQTGHLAPADKKLYALRDVTATVDSIPLIAASVMSKKIAAGADAIVLDVKVGSGAFMKKLEDAFNLARTMVDIGNQVGRKTVALVTNMDQPLGYAVGNALEVREAIATLKGQGPEDLRELCLQLGSEMLVLAGMAEDPPAARTRLEQIIDSGAALNKFKEFVAAQGGNPEVADREELLPAAAVLYPVQAKLDGYIAEIQAEQIGLAAMALGAGRATKEDVIDLAVGIVLKKKIGDKISAGETLADLHAQKDMDLTAVEQMIQQAFTINGAPPAQGNILLGKVSGSSVFQFE
>NC_015589.1|WP_041275828.1|3103457_3104636_-|phosphopentomutase
MEKKIKRVTVIILDSVGVGELPDAADYGDTGSNTLANVAKAVKGLKLPNLGQLGLGNILDVEGVPPVPQPRAAYGKMAETSPGKDTTTGHWEMAGIILEKPFRTYPQGFPRELIEEFEKRIGRKSLGNVVASGTQIIEELGREHMSTGRPIVYTSADSVFQIAAHEEVIPLEELYRMCQIAREMLVDEHQVGRVIARPFLGQPGSFKRTSNRHDYAVTPPVPNLLVSLQEAGIKTMGVGKIYDIFAGQGVSEKVTTRDNMDGVDQTLRFMRTNPEGLIMANLVEYDSLYGHRNDARGYANALEDFDRRLPEILAAMLPQEVLLITADHGCDPTTPSTDHSREYVPLLVFGAPVKGGVNLGIRSSFADVAATLGDFFGVPFKTGTSFAPKILL
>NC_015589.1|WP_013842995.1|3104671_3105562_-|site-specific-tyrosine-recombinase-XerD
MERWLEEFIHYLAVERGLAQNTLASYRIDLSQYLSHLKKQGASSLNQADRNQILSHLYKLQKSGKAPATISRHIAALKHFYRFLLAEGLISEDPTATLEAPKLAQRLPKILSTAEVEILLSQPQLADPAGMRDKAMLELIYATGIRVSEMVALDIEHIQLDMGYIRCFGKGSKERIIPLGSVAAHYVREYLAWARVRLTKGKLEHQALFVNVQGKRLTRQGFWKITKKYAREGKINKPITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKIRLKEVYTQSHPRA
>NC_015589.1|WP_013842996.1|3105695_3105959_-|hypothetical-protein
MFVVLITRLRQKVLKGLRLVFALAVLAILVVQLVNLVKCSGLYDHEKVPSGNPMRVQAPVIEVSEDDRPGLLDRAVEQLVKYYRHKT

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Crispr_ID: NC_015589_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015589_12

3099787-3101765

Orphan

Consensus_repeat	Method
GTTTCAAATCCTTATAGGTAAGCTAGAAAC	PILER-CR
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CRISPRCasFinder
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CRT

29 spacers

The CRISPR arrays of NC_015589_12

>merge|NC_015589|12|3099787-3101765|PILER-CR,CRISPRCasFinder,CRT
GTTTCTAGCTTACCTATAAGGATTTGAAACTGTTTCTTCATCTAAAGCAATAATTTCACCTTGAATGGTTTCTAGCTTACCTATAAGGATTTGAAACCGTAATCGTCAGATGTAATTTCCGGGGCGAAAACAGTCAGTTTCTAGCTTACCTATAAGGATTTGAAACTAGGGAGGATGCCATCATTTAAACATCCATAAAGGCCTTGGTTTCTAGCTTACCTATAAGGATTTGAAACTTTTTTATAAAAGCGAGAGTAAGGGCGGCTATCGCGTTTCTAGCTTACCTATAAGGATTTGAAACTGTTACTCCGGCGCCGCTGGTCCTGACCCCCGGTGCCAGTTTCTAGCTTACCTATAAGGATTTGAAACATATAAATATATCATGATATATCATGATATGTCAATACGTTTCTAGCTTACCTATAAGGATTTGAAACAAAAGATACTGAATTCTTTCATAAGGTTCATTACCGTTTCTAGCTTACCTATAAGGATTTGAAACTCTTTTTGGCGTAACTCCTCTTTGAGCGGGATAGGTTTCTAGCTTACCTATAAGGATTTGAAACTCTGTCGATTGACTCTGAAGTGGGTGGGGCGGCGGCTAGTTTCTAGCTTACCTATAAGGATTTGAAACCCCCAAGGTATAGGGGGTATAAATATAGTAGATACCGTTTCTAGCTTACCTATAAGGATTTGAAACAACTGTCTGGCTTGATAATCCAACTTCATCGCCAATAGTTTCTAGCTTACCTATAAGGATTTGAAACTCGGTATTGAGTTATGCGACCCCACAACCTTCCAAGTTTCTAGCTTACCTATAAGGATTTGAAACATTTCATTGGGGTTCATGAATTACATTTGTATGTTCCAGTTTCTAGCTTACCTATAAGGATTTGAAACTGAAAATAGAATTTTAAAGGAGAAACTTGGAGGTATTCAGTTTCTAGCTTACCTATAAGGATTTGAAACCTCTCCCACATCTATCCCCAAAGGGAACCCCTGGCCTGCGTTTCTAGCTTACCTATAAGGATTTGAAACTATAGAGCCGCCGTTCAATTGTTCGGTTGCTATGTCAGTCTATGTTTCTAGCTTACCTATAAGGATTTGAAACTACATCATTTTATCCCTCTTTCTATTTTTCTTTTTCGTTTCTAGCTTACCTATAAGGATTTGAAACACTGAGTTCATGCTACACACTCCTTTGTTGTAGATATGAGTTTCTAGCTTACCTATAAGGATTTGAAACTATTTTAAAGCGCTTTTATCATCACCTACTGGTGTAGTTTCTAGCTTACCTATAAGGATTTGAAACCCCCGGCACAATTTGAAAACCTATTCCCCATACAGAAGTTTCTAGCTTACCTATAAGGATTTGAAACCTTGCACTCTTGCCCCGATCCCCGGCAGCTTTCTGAATGTTTCTAGCTTACCTATAAGGATTTGAAACATAAATGGCATAGTGACAACACTAATACAGATAGGTTTCTAGCTTACCTATAAGGATTTGAAACCCGGGACACTGACGTAGGCCGCTGCATCCGGAATGTGGTTTCTAGCTTACCTATAAGGATTTGAAACACCCCGATACAGACGATGAATCTTCGGCTTGCGACTGGTTTCTAGCTTACCTATAAGGATTTGAAACGTATAGATCAAGTTGAACTTCTTCAGCGTCAGGGATTCGTTTCTAGCTTACCTATAAGGATTTGAAACTTACTGATGATTGCTTACTTTCTTTATTTACAAGCAGTTTCTAGCTTACCTATAAGGATTTGAAACTTTTTCACGAATTCCTCTGCTGCAACCATAGCAGCCAGTTTCTAGCTTACCTATAAGGATTTGAAACGAATTGCAATAGCCTTGGCCTCTGTTGGCCGACCTATGTTTCCAGCTTACCTATAAGGATTTGAAACTATTATCCTTACTTCCCCCTTCTCCATTTGTTTATAGTTTCTAGCTTACCTATAAGGATTTGAAAC

>NC_015589|12|11|3099787-3101765|PILER-CR
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TGTTTCTTCATCTAAAGCAATAATTTCACCTTGAATG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CGTAATCGTCAGATGTAATTTCCGGGGCGAAAACAGTCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TAGGGAGGATGCCATCATTTAAACATCCATAAAGGCCTTG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TTTTTTATAAAAGCGAGAGTAAGGGCGGCTATCGC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TGTTACTCCGGCGCCGCTGGTCCTGACCCCCGGTGCCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ATATAAATATATCATGATATATCATGATATGTCAATAC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	AAAAGATACTGAATTCTTTCATAAGGTTCATTACC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TCTTTTTGGCGTAACTCCTCTTTGAGCGGGATAG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TCTGTCGATTGACTCTGAAGTGGGTGGGGCGGCGGCTA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CCCCAAGGTATAGGGGGTATAAATATAGTAGATACC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	AACTGTCTGGCTTGATAATCCAACTTCATCGCCAATA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TCGGTATTGAGTTATGCGACCCCACAACCTTCCAA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ATTTCATTGGGGTTCATGAATTACATTTGTATGTTCCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TGAAAATAGAATTTTAAAGGAGAAACTTGGAGGTATTCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CTCTCCCACATCTATCCCCAAAGGGAACCCCTGGCCTGC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TATAGAGCCGCCGTTCAATTGTTCGGTTGCTATGTCAGTCTAT
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TACATCATTTTATCCCTCTTTCTATTTTTCTTTTTC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ACTGAGTTCATGCTACACACTCCTTTGTTGTAGATATGA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TATTTTAAAGCGCTTTTATCATCACCTACTGGTGTA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CCCCGGCACAATTTGAAAACCTATTCCCCATACAGAA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CTTGCACTCTTGCCCCGATCCCCGGCAGCTTTCTGAAT
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ATAAATGGCATAGTGACAACACTAATACAGATAG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CCGGGACACTGACGTAGGCCGCTGCATCCGGAATGTG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ACCCCGATACAGACGATGAATCTTCGGCTTGCGACTG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	GTATAGATCAAGTTGAACTTCTTCAGCGTCAGGGATTC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TTACTGATGATTGCTTACTTTCTTTATTTACAAGCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TTTTTCACGAATTCCTCTGCTGCAACCATAGCAGCCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	GAATTGCAATAGCCTTGGCCTCTGTTGGCCGACCTAT
GTTTCCAGCTTACCTATAAGGATTTGAAAC	TATTATCCTTACTTCCCCCTTCTCCATTTGTTTATA
GTTTCTAGCTTACCTATAAGGATTTGAAAC

>NC_015589|12|12|3099787-3101765|CRISPRCasFinder
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TGTTTCTTCATCTAAAGCAATAATTTCACCTTGAATG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CGTAATCGTCAGATGTAATTTCCGGGGCGAAAACAGTCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TAGGGAGGATGCCATCATTTAAACATCCATAAAGGCCTTG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TTTTTTATAAAAGCGAGAGTAAGGGCGGCTATCGC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TGTTACTCCGGCGCCGCTGGTCCTGACCCCCGGTGCCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ATATAAATATATCATGATATATCATGATATGTCAATAC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	AAAAGATACTGAATTCTTTCATAAGGTTCATTACC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TCTTTTTGGCGTAACTCCTCTTTGAGCGGGATAG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TCTGTCGATTGACTCTGAAGTGGGTGGGGCGGCGGCTA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CCCCAAGGTATAGGGGGTATAAATATAGTAGATACC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	AACTGTCTGGCTTGATAATCCAACTTCATCGCCAATA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TCGGTATTGAGTTATGCGACCCCACAACCTTCCAA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ATTTCATTGGGGTTCATGAATTACATTTGTATGTTCCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TGAAAATAGAATTTTAAAGGAGAAACTTGGAGGTATTCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CTCTCCCACATCTATCCCCAAAGGGAACCCCTGGCCTGC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TATAGAGCCGCCGTTCAATTGTTCGGTTGCTATGTCAGTCTAT
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TACATCATTTTATCCCTCTTTCTATTTTTCTTTTTC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ACTGAGTTCATGCTACACACTCCTTTGTTGTAGATATGA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TATTTTAAAGCGCTTTTATCATCACCTACTGGTGTA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CCCCGGCACAATTTGAAAACCTATTCCCCATACAGAA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CTTGCACTCTTGCCCCGATCCCCGGCAGCTTTCTGAAT
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ATAAATGGCATAGTGACAACACTAATACAGATAG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CCGGGACACTGACGTAGGCCGCTGCATCCGGAATGTG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ACCCCGATACAGACGATGAATCTTCGGCTTGCGACTG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	GTATAGATCAAGTTGAACTTCTTCAGCGTCAGGGATTC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TTACTGATGATTGCTTACTTTCTTTATTTACAAGCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TTTTTCACGAATTCCTCTGCTGCAACCATAGCAGCCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	GAATTGCAATAGCCTTGGCCTCTGTTGGCCGACCTAT
GTTTCCAGCTTACCTATAAGGATTTGAAAC	TATTATCCTTACTTCCCCCTTCTCCATTTGTTTATA
GTTTCTAGCTTACCTATAAGGATTTGAAAC

>NC_015589|12|10|3099787-3101765|CRT
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TGTTTCTTCATCTAAAGCAATAATTTCACCTTGAATG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CGTAATCGTCAGATGTAATTTCCGGGGCGAAAACAGTCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TAGGGAGGATGCCATCATTTAAACATCCATAAAGGCCTTG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TTTTTTATAAAAGCGAGAGTAAGGGCGGCTATCGC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TGTTACTCCGGCGCCGCTGGTCCTGACCCCCGGTGCCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ATATAAATATATCATGATATATCATGATATGTCAATAC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	AAAAGATACTGAATTCTTTCATAAGGTTCATTACC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TCTTTTTGGCGTAACTCCTCTTTGAGCGGGATAG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TCTGTCGATTGACTCTGAAGTGGGTGGGGCGGCGGCTA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CCCCAAGGTATAGGGGGTATAAATATAGTAGATACC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	AACTGTCTGGCTTGATAATCCAACTTCATCGCCAATA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TCGGTATTGAGTTATGCGACCCCACAACCTTCCAA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ATTTCATTGGGGTTCATGAATTACATTTGTATGTTCCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TGAAAATAGAATTTTAAAGGAGAAACTTGGAGGTATTCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CTCTCCCACATCTATCCCCAAAGGGAACCCCTGGCCTGC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TATAGAGCCGCCGTTCAATTGTTCGGTTGCTATGTCAGTCTAT
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TACATCATTTTATCCCTCTTTCTATTTTTCTTTTTC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ACTGAGTTCATGCTACACACTCCTTTGTTGTAGATATGA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TATTTTAAAGCGCTTTTATCATCACCTACTGGTGTA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CCCCGGCACAATTTGAAAACCTATTCCCCATACAGAA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CTTGCACTCTTGCCCCGATCCCCGGCAGCTTTCTGAAT
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ATAAATGGCATAGTGACAACACTAATACAGATAG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	CCGGGACACTGACGTAGGCCGCTGCATCCGGAATGTG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	ACCCCGATACAGACGATGAATCTTCGGCTTGCGACTG
GTTTCTAGCTTACCTATAAGGATTTGAAAC	GTATAGATCAAGTTGAACTTCTTCAGCGTCAGGGATTC
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TTACTGATGATTGCTTACTTTCTTTATTTACAAGCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	TTTTTCACGAATTCCTCTGCTGCAACCATAGCAGCCA
GTTTCTAGCTTACCTATAAGGATTTGAAAC	GAATTGCAATAGCCTTGGCCTCTGTTGGCCGACCTAT
GTTTCCAGCTTACCTATAAGGATTTGAAAC	TATTATCCTTACTTCCCCCTTCTCCATTTGTTTATA
GTTTCTAGCTTACCTATAAGGATTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015589.1\|WP_013842993.1\|3102102_3103431_-\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180387
NC_015589.1\|WP_013842999.1\|3106946_3107243_-\|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl\|CDD\|365990
NC_015589.1\|WP_013842987.1\|3093233_3093872_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377924
NC_015589.1\|WP_013843002.1\|3108741_3109419_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842984.1\|3088796_3089243_-\|anti-sigma-F-factor	unknown	unknown	gnl\|CDD\|179626
NC_015589.1\|WP_013842996.1\|3105695_3105959_-\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013843001.1\|3108142_3108595_+\|DUF3795-domain-containing-protein	unknown	unknown	gnl\|CDD\|378914
NC_015589.1\|WP_013842990.1\|3096354_3097524_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NC_015589.1\|WP_013842988.1\|3095382_3095811_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_015589.1\|WP_013843000.1\|3107358_3107937_-\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|131878
NC_015589.1\|WP_013842997.1\|3106111_3106348_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842998.1\|3106450_3106906_+\|DUF441-domain-containing-protein	unknown	unknown	gnl\|CDD\|377279
NC_015589.1\|WP_041275828.1\|3103457_3104636_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NC_015589.1\|WP_013842991.1\|3097691_3098066_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NC_015589.1\|WP_013842986.1\|3089728_3090976_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NC_015589.1\|WP_013842985.1\|3089256_3089595_-\|anti-sigma-F-factor-antagonist	unknown	unknown	gnl\|CDD\|131932
NC_015589.1\|WP_013842989.1\|3095996_3096281_+\|hypothetical-protein	unknown	unknown	unknown
NC_015589.1\|WP_013842992.1\|3098078_3099461_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226657
NC_015589.1\|WP_013842995.1\|3104671_3105562_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|274043
NC_015589.1\|WP_013842983.1\|3087997_3088780_-\|RNA-polymerase-sporulation-sigma-factor-SigF	unknown	unknown	gnl\|CDD\|180137

Protein	Function_ID	Function_description	E-value
NC_015589.1\|WP_013842993.1\|3102102_3103431_-\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|180387	PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed.	0
NC_015589.1\|WP_013842999.1\|3106946_3107243_-\|alpha/beta-type-small-acid-soluble-spore-protein	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	4.08123e-15
NC_015589.1\|WP_013842987.1\|3093233_3093872_-\|copper-amine-oxidase-N-terminal-domain-containing-protein	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	3.596e-25
NC_015589.1\|WP_013842984.1\|3088796_3089243_-\|anti-sigma-F-factor	gnl\|CDD\|179626	PRK03660, PRK03660, anti-sigma F factor; Provisional.	2.38071e-78
NC_015589.1\|WP_013842990.1\|3096354_3097524_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.73164e-97
NC_015589.1\|WP_013843001.1\|3108142_3108595_+\|DUF3795-domain-containing-protein	gnl\|CDD\|378914	pfam12675, DUF3795, Protein of unknown function (DUF3795). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 99 and 171 amino acids in length. This protein is likely to be zinc binding given the conserved cysteines.	5.86667e-13
NC_015589.1\|WP_041275828.1\|3103457_3104636_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NC_015589.1\|WP_013842988.1\|3095382_3095811_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.40831e-28
NC_015589.1\|WP_013843000.1\|3107358_3107937_-\|stage-II-sporulation-protein-M	gnl\|CDD\|131878	TIGR02831, Stage_II_sporulation_protein_M, stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M. [Cellular processes, Sporulation and germination].	2.96922e-31
NC_015589.1\|WP_013842998.1\|3106450_3106906_+\|DUF441-domain-containing-protein	gnl\|CDD\|377279	pfam04284, DUF441, Protein of unknown function (DUF441). Predicted to be an integral membrane protein.	4.43146e-41
NC_015589.1\|WP_013842991.1\|3097691_3098066_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	5.60572e-31
NC_015589.1\|WP_013842986.1\|3089728_3090976_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.34102e-118
NC_015589.1\|WP_013842985.1\|3089256_3089595_-\|anti-sigma-F-factor-antagonist	gnl\|CDD\|131932	TIGR02886, Anti-sigma_F_factor_antagonist, anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes [Regulatory functions, Protein interactions, Cellular processes, Sporulation and germination].	8.33642e-45
NC_015589.1\|WP_013842992.1\|3098078_3099461_+\|hypothetical-protein	gnl\|CDD\|226657	COG4194, COG4194, Predicted membrane protein [General function prediction only].	4.70793e-14
NC_015589.1\|WP_013842995.1\|3104671_3105562_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	8.3797e-150
NC_015589.1\|WP_013842983.1\|3087997_3088780_-\|RNA-polymerase-sporulation-sigma-factor-SigF	gnl\|CDD\|180137	PRK05572, PRK05572, RNA polymerase sporulation sigma factor, SigF/SigG family.	4.0895e-131

>NC_015589.1|WP_013842992.1|3098078_3099461_+|hypothetical-protein
MLLSLLIIAWLSFGTMAFVALFYKDHHDRQILGVVLSQEHAKSPQVQATIQDFKRACYTVLLLSVGLSLFMLIQTIRPYAEFYMLFLVMANLFANWFIIHRFQQRLQSIKRKNQWVYPQSRIIRVDLNVSKEKGKSAVTSIWIWLFLLISFIPTAFLIFHPQMQESYPIGFSLIGPLCQLSTIYFYYQMKNRQASVLSDNTEINKACARTEERINTMSATLSSLAMLVFWILFNISIIYIKNDMFTALSVVILVSFLLAIANWQQRKIRAAQHYFFGEVLKDDSGIYEQESTWKWGFYYNPNDPRIIVPKRIANMGWTINIGRPAGKAIGAGVLVFFLGIIGIVAYGGFKDYTITENNSKIMIDAAMYDISLEKNQVISVSITDKIPKGTRTNGYGGVNKSFGHFSIEGFGKCMLYIYNDVDKYIVLKLEGDDPGYVIVNDKSQDKTEQLYQTIKQWLEE
>NC_015589.1|WP_013842991.1|3097691_3098066_+|GntR-family-transcriptional-regulator
MILRIDMTSDIPIYQQIRNEIVFGVAKGHMKAGDLLPTVRQLAADIGVNPMTVNKAYALLREEGIIVIDRRHGAQISNRGMNGNAFDANFDQQVELLISEARMKGASKQDIQKHISDIIDRVYE
>NC_015589.1|WP_013842990.1|3096354_3097524_+|MFS-transporter
MSQRQALWTKDFVLICLTSLFMFTSFYFLITTLPMYVTDVLKGNESNVGYIVGVLTITAVLVRPISGYLLDTMGRKSVVVFALVAFVLVTIAYNLATSLLILFLLRAIHGFSWGFTSTGAGTIASDIVPAARRGEGMGYYGLAGTLAMAVGPVLSIYILGLYGFNTLFTAGSIIAALSLACLLGIKGSEVKTDKKNTKISLNSFLEPRVYSLSMVLFFVNLTYGAIVSFITLYAKELNIANAGIFFMVYGVALLFVRPYAGKIFDKHGPNQIMLIGFISLAASFIVLSIATGSFMFILSAIIMGIGFGIIQPTLQAMAINRVEPYRRGAANGTIFTALDLGIGIGSILLGLVSNQFGLSYLYLICGFILIIPMVVFFTKDAKKPSNQLG
>NC_015589.1|WP_013842989.1|3095996_3096281_+|hypothetical-protein
MRNDLVFKNSYDAHMAAYFDPECLQRSGYQLKKFVDGYRYYPINKKQAYVIRNSQVVELGQHVSTYYWSGESKFPNHFKCLIIPFSHTIKQKQL
>NC_015589.1|WP_013842988.1|3095382_3095811_+|MarR-family-transcriptional-regulator
MEFKLDNSLGFILNRSNTRMKHTLLHHFKEYNVTPEQWAILNRLWEKEGLSPKELAELTSKDQPTTVRILSRLEKKGYITRQVNPEDNRAYLISLTSEGRAIKDKLFPLAFEALNKAIKGIDKEELEVTRAVLNKVFKNLES
>NC_015589.1|WP_013842987.1|3093233_3093872_-|copper-amine-oxidase-N-terminal-domain-containing-protein
MNRVIIILTSIFIMSFCASANAAPEIKININGRYVNFATDAGKPYLDENNRTQVPLKATMEEAGAIVKWDGENQVAIVEKNNTVIKVPIGKSYIFVDDKQVANDTQAVVKNGRTYLPISVVLKNLAFTVKWDDATQTVYAVHYGDLVKEDEQLVDEMWENAETAQDVINSIDATIDHERFQDQITELTERQVLNNLFNEPIKINIPKEDDPN
>NC_015589.1|WP_013842986.1|3089728_3090976_-|D-alanyl-D-alanine-carboxypeptidase
MKPRIKSTVFILLCLSLAFTVCLPSALAAPETQKPPAGQQAPDLNGPKPAPEAAGEEKKSFPLETTAETAVLMDYSSGQILLDKDMHSSRPMASVTKLMTMLLICEAEAQGKIKTTDKIVTSEHAASMGGSQIFLEPGEELPMKEMLISIATGSANDASVAMSEAIAGSEEAFVELMNQKAQELGLKNTHFSNPTGLPVENHYTSAYDMAQVLRQCLRYPLFREVSSIYEHDLRGGDFKLWNTNKLLKWYPGADAGKTGWTNEAKYCLAASAKKDGLRLVSVVLGCPMPRTHFQETIKLFNYGFAKYKAVNLAEAGQVIGEIAVDKGEVEKLKIATADPVGLVVLKGQEKTVQGKVQLPDKIEAPVKKGQVIGQYLVMKDGQEVLKVNLVAQKEVQKASAFRLFNKVLDRVYGMD
>NC_015589.1|WP_013842985.1|3089256_3089595_-|anti-sigma-F-factor-antagonist
MQLDMEHRQDTLVVRLGGELDLGVADKLRLTLDKELFQGKIRHLIINLSRVTFMDSSGLGVILGRYKRLTQQGGKVVLVGAQPPVKRVLELSGLLQIMEDFPDEAKALSKIV
>NC_015589.1|WP_013842984.1|3088796_3089243_-|anti-sigma-F-factor
MQVLNRFSLEFYSIPENVAFARVAVAAFASQLDCTLPELEEIKVAVSEAVGNAIIHGYRNKPDKIVYLTVTIYKEGLEIQIKDCGNGIADIKLAMQPAFSTDPERMGLGFVFMQSFSDRINVESQKGVGTTITMFKNIGIRGARARAN
>NC_015589.1|WP_013842983.1|3087997_3088780_-|RNA-polymerase-sporulation-sigma-factor-SigF
MSSTRLLEMNLPRFPLLSDKEMRSLLKKAQAGDADARERLVNCNLKLVFNLVQRFNNRGYELEDLFQIGCIGLMKAIDKFDLSYDVKFSTYAVPMIIGEIRRFLRDDNPVKVSRSLKETAYKIQQARDRLTARLGRDPSINEIAKELGFCREEVVSALEAAQTPTSIYETLHQDDGDPIYILDQLSSEEDGDSPWLEKLAVKQLLVELPERDRQIILWRFFEDKTQSEVALRLGLSQVQVSRLERQALRKLKELLTPTGS
>NC_015589.1|WP_013842993.1|3102102_3103431_-|pyrimidine-nucleoside-phosphorylase
MRMYDIILKKRRGGTLSAAEIDFFIQGYTRGDVPDYQAAALTMAIFFQGLEPEETADLTLAMARSGDRADLSSLPGVKVDKHSTGGVGDKTTLVLGPLVAAAGVPVAKMSGRGLGHTGGTIDKLEAIPGFRVSMDNRSFLEQVRRINLAVVAQTGHLAPADKKLYALRDVTATVDSIPLIAASVMSKKIAAGADAIVLDVKVGSGAFMKKLEDAFNLARTMVDIGNQVGRKTVALVTNMDQPLGYAVGNALEVREAIATLKGQGPEDLRELCLQLGSEMLVLAGMAEDPPAARTRLEQIIDSGAALNKFKEFVAAQGGNPEVADREELLPAAAVLYPVQAKLDGYIAEIQAEQIGLAAMALGAGRATKEDVIDLAVGIVLKKKIGDKISAGETLADLHAQKDMDLTAVEQMIQQAFTINGAPPAQGNILLGKVSGSSVFQFE
>NC_015589.1|WP_041275828.1|3103457_3104636_-|phosphopentomutase
MEKKIKRVTVIILDSVGVGELPDAADYGDTGSNTLANVAKAVKGLKLPNLGQLGLGNILDVEGVPPVPQPRAAYGKMAETSPGKDTTTGHWEMAGIILEKPFRTYPQGFPRELIEEFEKRIGRKSLGNVVASGTQIIEELGREHMSTGRPIVYTSADSVFQIAAHEEVIPLEELYRMCQIAREMLVDEHQVGRVIARPFLGQPGSFKRTSNRHDYAVTPPVPNLLVSLQEAGIKTMGVGKIYDIFAGQGVSEKVTTRDNMDGVDQTLRFMRTNPEGLIMANLVEYDSLYGHRNDARGYANALEDFDRRLPEILAAMLPQEVLLITADHGCDPTTPSTDHSREYVPLLVFGAPVKGGVNLGIRSSFADVAATLGDFFGVPFKTGTSFAPKILL
>NC_015589.1|WP_013842995.1|3104671_3105562_-|site-specific-tyrosine-recombinase-XerD
MERWLEEFIHYLAVERGLAQNTLASYRIDLSQYLSHLKKQGASSLNQADRNQILSHLYKLQKSGKAPATISRHIAALKHFYRFLLAEGLISEDPTATLEAPKLAQRLPKILSTAEVEILLSQPQLADPAGMRDKAMLELIYATGIRVSEMVALDIEHIQLDMGYIRCFGKGSKERIIPLGSVAAHYVREYLAWARVRLTKGKLEHQALFVNVQGKRLTRQGFWKITKKYAREGKINKPITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKIRLKEVYTQSHPRA
>NC_015589.1|WP_013842996.1|3105695_3105959_-|hypothetical-protein
MFVVLITRLRQKVLKGLRLVFALAVLAILVVQLVNLVKCSGLYDHEKVPSGNPMRVQAPVIEVSEDDRPGLLDRAVEQLVKYYRHKT
>NC_015589.1|WP_013842997.1|3106111_3106348_+|hypothetical-protein
MEKIQLNFLNPQSPFTLFLILVLLVLGTEKELESYLENAKNFVLETRRSMESIRGGVQNMHANMTAFQTHLLQLNEKK
>NC_015589.1|WP_013842998.1|3106450_3106906_+|DUF441-domain-containing-protein
MTSGTITLLFLLIIGFVSDSTLIATAACLLLIIKLTKTFRFFSLLDRRGLEVGLIFLMLSVLVPLAHDNMAYLDLLKKTLSPHGILAMIGGALATHMNGEGLKLLKLDPQLIFGMVLGSIIGIVFLGGIPIGPLMAAGLTALFLEVIYWFK
>NC_015589.1|WP_013842999.1|3106946_3107243_-|alpha/beta-type-small-acid-soluble-spore-protein
MSKELVQQEIYPVDLMKITASTGLVPKELQGYVKPALQEFRDEMAAELGLPEYASMDKGELPSRMNGNVGGGMTKKMVAFAEAVLAWNYKNRLLLKGE
>NC_015589.1|WP_013843000.1|3107358_3107937_-|stage-II-sporulation-protein-M
MYLLATVALLAGLAFGGWGAHHLDGQKTVQLSEYLEMFVSQAGSISIDRPLAVKNAITNNLFFIGMVYLLGLTVVGAPVILALLFARGFSLGFTLGFLTRQGNGEGILLALTSVLPQNILLLPAIFMACVAALSFSWLLIKRFHDSRMPVCPGLMGYHLLILIVACIAAAAGLVEAFVTPQLIKAAAAILAK
>NC_015589.1|WP_013843001.1|3108142_3108595_+|DUF3795-domain-containing-protein
MDYREAVQDLAPCGLDCSRCADHERGEIKQLSQRLRQLLGNYGRLAQIKAAEKPAFEHYAHFREILSLFADGPSCGGCRSAQVKCPISCLAKTCHKEKKVDFCFQCGEYPCTEQFKDLRGLRKRWQENNDAMKETGVAAFHLEQKKRPRY
>NC_015589.1|WP_013843002.1|3108741_3109419_-|hypothetical-protein
MTRLVTLTANASGAAQAARAGMVVVVVDVIDMSTTLEAALDAGALAVFGASPDAASPPVALDPEAVGRKAAETALAAGSSVVLVTEPRVGTDQERAANASRFLAGVQAGGAEVTAILPNLGAETTKLCDLQGRVVVAVTATGGVAYDAALTAGAPAVVTGTVARTMRKRGSAPAKAAARRAVEEAVKRDAGICVVASTANSLEDLLAAEYILKCIVEEGFLAYGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015589_10	10.11\|3058474\|37\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	3058474-3058510	37	NC_015589.1	1106213-1106249	1	0.973

1. spacer 10.11|3058474|37|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to position: 1106213-1106249, mismatch: 1, identity: 0.973

aaaactcttctttcagcttcggcggctgcagtttgga	CRISPR spacer
aaaactcttctttcagcttcggcggctgcagtctgga	Protospacer
********************************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015589_4	4.18\|1422998\|34\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	1422998-1423031	34	NZ_CP007144	Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence	202100-202133	5	0.853
NC_015589_4	4.22\|1423262\|34\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	1423262-1423295	34	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	47129-47162	7	0.794
NC_015589_4	4.23\|1423328\|34\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	1423328-1423361	34	MG945644	UNVERIFIED: Microviridae sp. isolate 9501-1507, complete genome	2822-2855	7	0.794
NC_015589_4	4.26\|1423526\|33\|NC_015589\|CRISPRCasFinder,CRT	1423526-1423558	33	NZ_CP016918	Parageobacillus thermoglucosidasius strain TM242 plasmid pNCI002, complete sequence	40413-40445	7	0.788
NC_015589_4	4.26\|1423526\|33\|NC_015589\|CRISPRCasFinder,CRT	1423526-1423558	33	NZ_CP016624	Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI002, complete sequence	40414-40446	7	0.788
NC_015589_7	7.10\|1800705\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1800705-1800739	35	NZ_CP045299	Kosakonia arachidis strain KACC 18508 plasmid unnamed1, complete sequence	33804-33838	7	0.8
NC_015589_7	7.41\|1802771\|34\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1802771-1802804	34	NC_010937	Clostridium perfringens plasmid pCW3, complete sequence	27978-28011	7	0.794
NC_015589_7	7.41\|1802771\|34\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1802771-1802804	34	NC_019687	Clostridium perfringens plasmid pCpb2-CP1, complete sequence	17747-17780	7	0.794
NC_015589_7	7.41\|1802771\|34\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1802771-1802804	34	NZ_CP025503	Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence	9744-9777	7	0.794
NC_015589_7	7.41\|1802771\|34\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1802771-1802804	34	NC_019257	Clostridium perfringens plasmid pJIR3844, complete sequence	18295-18328	7	0.794
NC_015589_4	4.26\|1423526\|33\|NC_015589\|CRISPRCasFinder,CRT	1423526-1423558	33	MN935200	UNVERIFIED: Staphylococcus phage VTCCBPA116 genomic sequence	1981-2013	8	0.758
NC_015589_5	5.5\|1425218\|35\|NC_015589\|CRT,CRISPRCasFinder	1425218-1425252	35	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	936138-936172	8	0.771
NC_015589_5	5.7\|1425352\|33\|NC_015589\|CRT,CRISPRCasFinder	1425352-1425384	33	NZ_CP016746	Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence	15736-15768	8	0.758
NC_015589_5	5.7\|1425352\|33\|NC_015589\|CRT,CRISPRCasFinder	1425352-1425384	33	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	114147-114179	8	0.758
NC_015589_5	5.7\|1425352\|33\|NC_015589\|CRT,CRISPRCasFinder	1425352-1425384	33	MT708547	Klebsiella phage Muenster, complete genome	235825-235857	8	0.758
NC_015589_5	5.7\|1425352\|33\|NC_015589\|CRT,CRISPRCasFinder	1425352-1425384	33	AB897757	Klebsiella phage K64-1 DNA, complete genome	114092-114124	8	0.758
NC_015589_5	5.7\|1425352\|33\|NC_015589\|CRT,CRISPRCasFinder	1425352-1425384	33	NZ_CP013332	Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence	31532-31564	8	0.758
NC_015589_6	6.5\|1435857\|34\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1435857-1435890	34	AP013435	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-U-MedDCM-OCT-S37-C71	24851-24884	8	0.765
NC_015589_6	6.24\|1437124\|33\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1437124-1437156	33	LC081338	Vibrio sp. 04Ya108 plasmid pSEA1 DNA, complete genome	316932-316964	8	0.758
NC_015589_7	7.10\|1800705\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1800705-1800739	35	JN638751	Bacillus phage G, complete genome	228301-228335	8	0.771
NC_015589_7	7.10\|1800705\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1800705-1800739	35	NC_021496	Lactobacillus reuteri I5007 plasmid pLRI02, complete sequence	13758-13792	8	0.771
NC_015589_12	12.1\|3099817\|37\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3099817-3099853	37	NC_049445	Acinetobacter phage AbTZA1, complete genome	148172-148208	8	0.784
NC_015589_12	12.1\|3099817\|37\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3099817-3099853	37	NC_049494	Acinetobacter phage vB_AbaM_PhT2, complete genome	141925-141961	8	0.784
NC_015589_12	12.17\|3100898\|36\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3100898-3100933	36	MG765274	Lactobacillus phage Maenad, complete genome	29847-29882	8	0.778
NC_015589_1	1.11\|1101036\|34\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	1101036-1101069	34	KT339177	Lactococcus phage GE1, complete genome	20575-20608	9	0.735
NC_015589_5	5.7\|1425352\|33\|NC_015589\|CRT,CRISPRCasFinder	1425352-1425384	33	NC_015915	Borreliella bissettii DN127 plasmid lp17, complete sequence	15169-15201	9	0.727
NC_015589_5	5.9\|1425484\|34\|NC_015589\|CRT,CRISPRCasFinder	1425484-1425517	34	JQ823122	Persicivirga phage P12024S, complete genome	31459-31492	9	0.735
NC_015589_5	5.9\|1425484\|34\|NC_015589\|CRT,CRISPRCasFinder	1425484-1425517	34	NC_018272	Persicivirga phage P12024L, complete genome	32257-32290	9	0.735
NC_015589_5	5.24\|1426477\|34\|NC_015589\|CRT,CRISPRCasFinder,PILER-CR	1426477-1426510	34	NZ_CP019036	Massilia putida strain 6NM-7 plasmid unnamed1, complete sequence	19024-19057	9	0.735
NC_015589_6	6.21\|1436923\|36\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1436923-1436958	36	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	456503-456538	9	0.75
NC_015589_6	6.21\|1436923\|36\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1436923-1436958	36	NZ_CP015063	Mesorhizobium ciceri strain CC1192 plasmid pMc1192, complete sequence	573091-573126	9	0.75
NC_015589_6	6.54\|1439123\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1439123-1439157	35	MT840185	Bacteriophage sp. Joined_contig_19 genomic sequence	35020-35054	9	0.743
NC_015589_7	7.10\|1800705\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1800705-1800739	35	MT774393	CrAssphage cr127_1, complete genome	2317-2351	9	0.743
NC_015589_8	8.10\|2490867\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	2490867-2490901	35	MK415408	CrAssphage GF1-2_000079F, complete genome	70029-70063	9	0.743
NC_015589_11	11.6\|3091697\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3091697-3091731	35	NZ_CP032827	Sphingomonas sp. YZ-8 plasmid unnamed2, complete sequence	105253-105287	9	0.743
NC_015589_11	11.11\|3092029\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3092029-3092063	35	MG030346	Proteus phage PM87, complete genome	54512-54546	9	0.743
NC_015589_11	11.11\|3092029\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3092029-3092063	35	CP059058	Proteus phage ASh-2020a, complete genome	19791-19825	9	0.743
NC_015589_11	11.11\|3092029\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3092029-3092063	35	MN840486	Proteus phage P16-2532, complete genome	54374-54408	9	0.743
NC_015589_11	11.11\|3092029\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3092029-3092063	35	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	2027098-2027132	9	0.743
NC_015589_11	11.18\|3092495\|36\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3092495-3092530	36	NZ_CP010861	Marinovum algicola DG 898 plasmid pMaD6, complete sequence	56822-56857	9	0.75
NC_015589_1	1.9\|1100905\|35\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	1100905-1100939	35	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	779656-779690	10	0.714
NC_015589_1	1.11\|1101036\|34\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	1101036-1101069	34	NZ_CP021643	Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence	61535-61568	10	0.706
NC_015589_5	5.11\|1425616\|34\|NC_015589\|CRT,CRISPRCasFinder	1425616-1425649	34	NZ_CP033609	Weissella hellenica strain 0916-4-2 plasmid pWHSP041, complete sequence	19126-19159	10	0.706
NC_015589_5	5.11\|1425616\|34\|NC_015589\|CRT,CRISPRCasFinder	1425616-1425649	34	NZ_CP042400	Weissella hellenica strain CBA3632 plasmid unnamed1, complete sequence	6635-6668	10	0.706
NC_015589_5	5.11\|1425616\|34\|NC_015589\|CRT,CRISPRCasFinder	1425616-1425649	34	EU874396	Bacillus phage IEBH, complete genome	47243-47276	10	0.706
NC_015589_5	5.11\|1425616\|34\|NC_015589\|CRT,CRISPRCasFinder	1425616-1425649	34	NC_029024	Bacillus phage 250, complete genome	34613-34646	10	0.706
NC_015589_5	5.13\|1425748\|34\|NC_015589\|CRT,CRISPRCasFinder	1425748-1425781	34	NZ_CP033609	Weissella hellenica strain 0916-4-2 plasmid pWHSP041, complete sequence	19126-19159	10	0.706
NC_015589_5	5.13\|1425748\|34\|NC_015589\|CRT,CRISPRCasFinder	1425748-1425781	34	NZ_CP042400	Weissella hellenica strain CBA3632 plasmid unnamed1, complete sequence	6635-6668	10	0.706
NC_015589_5	5.13\|1425748\|34\|NC_015589\|CRT,CRISPRCasFinder	1425748-1425781	34	EU874396	Bacillus phage IEBH, complete genome	47243-47276	10	0.706
NC_015589_5	5.13\|1425748\|34\|NC_015589\|CRT,CRISPRCasFinder	1425748-1425781	34	NC_029024	Bacillus phage 250, complete genome	34613-34646	10	0.706
NC_015589_5	5.17\|1426011\|34\|NC_015589\|CRT,CRISPRCasFinder	1426011-1426044	34	MN096362	Arthrobacter phage Vibaki, complete genome	28575-28608	10	0.706
NC_015589_5	5.23\|1426409\|36\|NC_015589\|CRT,CRISPRCasFinder,PILER-CR	1426409-1426444	36	NC_047754	Escherichia phage APCEc03, complete genome	47197-47232	10	0.722
NC_015589_6	6.6\|1435923\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1435923-1435957	35	KY554772	Lactococcus phage AM5, complete genome	99033-99067	10	0.714
NC_015589_6	6.6\|1435923\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1435923-1435957	35	NC_049856	Lactococcus phage AM4, complete genome	81078-81112	10	0.714
NC_015589_7	7.28\|1801910\|34\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1801910-1801943	34	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	570228-570261	10	0.706
NC_015589_7	7.28\|1801910\|34\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	1801910-1801943	34	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	246439-246472	10	0.706
NC_015589_8	8.10\|2490867\|35\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	2490867-2490901	35	MN657160	Flavobacterium sp. strain ANT_P5B plasmid pA5BP1, complete sequence	3369-3403	10	0.714
NC_015589_10	10.42\|3060528\|36\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	3060528-3060563	36	NZ_CP032858	Bacillus subtilis subsp. subtilis strain 2RL2-3 plasmid unnamed1, complete sequence	104712-104747	10	0.722
NC_015589_10	10.42\|3060528\|36\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	3060528-3060563	36	NZ_CP032873	Bacillus subtilis subsp. subtilis strain 2KL1 plasmid unnamed1, complete sequence	125749-125784	10	0.722
NC_015589_10	10.42\|3060528\|36\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	3060528-3060563	36	NZ_CP026534	Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence	28260-28295	10	0.722
NC_015589_12	12.5\|3100088\|38\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3100088-3100125	38	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1633899-1633936	10	0.737
NC_015589_12	12.5\|3100088\|38\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3100088-3100125	38	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	179212-179249	10	0.737
NC_015589_12	12.21\|3101166\|38\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3101166-3101203	38	NZ_CP040721	Rhodococcus pyridinivorans strain YF3 plasmid unnamed2, complete sequence	56063-56100	10	0.737
NC_015589_12	12.21\|3101166\|38\|NC_015589\|PILER-CR,CRISPRCasFinder,CRT	3101166-3101203	38	NZ_CP040721	Rhodococcus pyridinivorans strain YF3 plasmid unnamed2, complete sequence	60770-60807	10	0.737
NC_015589_5	5.6\|1425285\|35\|NC_015589\|CRT,CRISPRCasFinder	1425285-1425319	35	NZ_CP018464	Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence	112492-112526	12	0.657

1. spacer 4.18|1422998|34|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 5, identity: 0.853

actggccattgccgcaagctccggctcagttagc--	CRISPR spacer
actggccactgccgcaagctcctgctca--cagcta	Protospacer
********.************* *****  .***

2. spacer 4.22|1423262|34|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 7, identity: 0.794

gtcagtttcattattatttgactcgtta-gtatct	CRISPR spacer
ttctatttcattattatttaactctttaggtata-	Protospacer
 ** .**************.**** *** ****

3. spacer 4.23|1423328|34|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to MG945644 (UNVERIFIED: Microviridae sp. isolate 9501-1507, complete genome) position: , mismatch: 7, identity: 0.794

--atagctctcaactgttgttttgtcaagtgcaact	CRISPR spacer
taatagtatt--actgttgatttgtcaggtgcaact	Protospacer
  ****. .*  ******* *******.********

4. spacer 4.26|1423526|33|NC_015589|CRISPRCasFinder,CRT matches to NZ_CP016918 (Parageobacillus thermoglucosidasius strain TM242 plasmid pNCI002, complete sequence) position: , mismatch: 7, identity: 0.788

tccagtgccttaaatttattggaaaaagtttta	CRISPR spacer
tatatttgtttaaatttaatggaaaaagtttta	Protospacer
* .* *  .********* **************

5. spacer 4.26|1423526|33|NC_015589|CRISPRCasFinder,CRT matches to NZ_CP016624 (Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI002, complete sequence) position: , mismatch: 7, identity: 0.788

tccagtgccttaaatttattggaaaaagtttta	CRISPR spacer
tatatttgtttaaatttaatggaaaaagtttta	Protospacer
* .* *  .********* **************

6. spacer 7.10|1800705|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045299 (Kosakonia arachidis strain KACC 18508 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

tattttaattattaatataattagttaaatatttt	CRISPR spacer
tattttaatttttaatataattatttgtttgtctt	Protospacer
********** ************ **.  *.*.**

7. spacer 7.41|1802771|34|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NC_010937 (Clostridium perfringens plasmid pCW3, complete sequence) position: , mismatch: 7, identity: 0.794

caaaaagcaaagttgctgttattgattgttttaa	CRISPR spacer
taaaaagaaaagttgttgttattgataattatta	Protospacer
.****** *******.********** .** * *

8. spacer 7.41|1802771|34|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NC_019687 (Clostridium perfringens plasmid pCpb2-CP1, complete sequence) position: , mismatch: 7, identity: 0.794

caaaaagcaaagttgctgttattgattgttttaa	CRISPR spacer
taaaaagaaaagttgttgttattgataattatta	Protospacer
.****** *******.********** .** * *

9. spacer 7.41|1802771|34|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025503 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence) position: , mismatch: 7, identity: 0.794

caaaaagcaaagttgctgttattgattgttttaa	CRISPR spacer
taaaaagaaaagttgttgttattgataattatta	Protospacer
.****** *******.********** .** * *

10. spacer 7.41|1802771|34|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NC_019257 (Clostridium perfringens plasmid pJIR3844, complete sequence) position: , mismatch: 7, identity: 0.794

caaaaagcaaagttgctgttattgattgttttaa	CRISPR spacer
taaaaagaaaagttgttgttattgataattatta	Protospacer
.****** *******.********** .** * *

11. spacer 4.26|1423526|33|NC_015589|CRISPRCasFinder,CRT matches to MN935200 (UNVERIFIED: Staphylococcus phage VTCCBPA116 genomic sequence) position: , mismatch: 8, identity: 0.758

tccagtgccttaaatttattggaaaaagtttta	CRISPR spacer
aacatttgtttaaatttatttaaaaaagtttta	Protospacer
  ** *  .*********** .***********

12. spacer 5.5|1425218|35|NC_015589|CRT,CRISPRCasFinder matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 8, identity: 0.771

acgacgagctggatcgcagcgacctggcgtgcgta	CRISPR spacer
atggcgagctggatcacagcgacctggagtccacc	Protospacer
*.*.***********.*********** ** *..

13. spacer 5.7|1425352|33|NC_015589|CRT,CRISPRCasFinder matches to NZ_CP016746 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence) position: , mismatch: 8, identity: 0.758

agacatgatatttcctcctttaaattttttatc	CRISPR spacer
aaagctgatatttactcctttaaagtttttgat	Protospacer
*.*  ******** ********** *****. .

14. spacer 5.7|1425352|33|NC_015589|CRT,CRISPRCasFinder matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 8, identity: 0.758

agacatgatatttcctcctttaaattttttatc	CRISPR spacer
tagtatagtattttctcttttaaattttttatc	Protospacer
 ...**..*****.***.***************

15. spacer 5.7|1425352|33|NC_015589|CRT,CRISPRCasFinder matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 8, identity: 0.758

agacatgatatttcctcctttaaattttttatc	CRISPR spacer
tagtatagtattttctcttttaaattttttatc	Protospacer
 ...**..*****.***.***************

16. spacer 5.7|1425352|33|NC_015589|CRT,CRISPRCasFinder matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 8, identity: 0.758

agacatgatatttcctcctttaaattttttatc	CRISPR spacer
tagtatagtattttctcttttaaattttttatc	Protospacer
 ...**..*****.***.***************

17. spacer 5.7|1425352|33|NC_015589|CRT,CRISPRCasFinder matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

agacatg-atatttcctcctttaaattttttatc	CRISPR spacer
-ctcatatttatttcctcctataaattctttatt	Protospacer
   ***.  *********** ******.*****.

18. spacer 6.5|1435857|34|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to AP013435 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-U-MedDCM-OCT-S37-C71) position: , mismatch: 8, identity: 0.765

actctttcctcacaaacatcatcccgaacgaatg	CRISPR spacer
acgtgttcatctcaaacatcatcccgaacaattt	Protospacer
** . *** ** *****************.* *

19. spacer 6.24|1437124|33|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to LC081338 (Vibrio sp. 04Ya108 plasmid pSEA1 DNA, complete genome) position: , mismatch: 8, identity: 0.758

cattgt----tgtcatttgcttgtttagcttttttat	CRISPR spacer
----gtgaaatgtcatttgcttgtttagtttcttgct	Protospacer
    **    ******************.**.**  *

20. spacer 7.10|1800705|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 8, identity: 0.771

tattttaattattaatataattagttaaatatttt	CRISPR spacer
tatttttattattaatataattaattaaaacaaac	Protospacer
****** ****************.*****     .

21. spacer 7.10|1800705|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NC_021496 (Lactobacillus reuteri I5007 plasmid pLRI02, complete sequence) position: , mismatch: 8, identity: 0.771

tattttaattattaatataattagttaaatatttt	CRISPR spacer
acaatagattattaaaataattagttaaatagttt	Protospacer
    * .******** *************** ***

22. spacer 12.1|3099817|37|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NC_049445 (Acinetobacter phage AbTZA1, complete genome) position: , mismatch: 8, identity: 0.784

-tgtttcttcatctaaagcaataatttcaccttgaatg	CRISPR spacer
atgcaacat-gtctaaagcaatagtttcacctttaatg	Protospacer
 **.  * * .************.********* ****

23. spacer 12.1|3099817|37|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NC_049494 (Acinetobacter phage vB_AbaM_PhT2, complete genome) position: , mismatch: 8, identity: 0.784

-tgtttcttcatctaaagcaataatttcaccttgaatg	CRISPR spacer
atgcaacat-gtctaaagcaatagtttcacctttaatg	Protospacer
 **.  * * .************.********* ****

24. spacer 12.17|3100898|36|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to MG765274 (Lactobacillus phage Maenad, complete genome) position: , mismatch: 8, identity: 0.778

tacatcattttatccctctttctatttttctttttc	CRISPR spacer
tccaaagttttatacctctttctatttttcgttcta	Protospacer
* **  .****** **************** **.*

25. spacer 1.11|1101036|34|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to KT339177 (Lactococcus phage GE1, complete genome) position: , mismatch: 9, identity: 0.735

ccaaacctttattttgccttcatcgtctatttca	CRISPR spacer
ccattagattaatttcccttcatcgtctatttgc	Protospacer
***     *** *** ****************

26. spacer 5.7|1425352|33|NC_015589|CRT,CRISPRCasFinder matches to NC_015915 (Borreliella bissettii DN127 plasmid lp17, complete sequence) position: , mismatch: 9, identity: 0.727

agacatgatatttcctcctttaaattttttatc	CRISPR spacer
taaactaataattccgcctttaaattttttaag	Protospacer
 .*  *.*** **** ***************

27. spacer 5.9|1425484|34|NC_015589|CRT,CRISPRCasFinder matches to JQ823122 (Persicivirga phage P12024S, complete genome) position: , mismatch: 9, identity: 0.735

---ttggacctgtttttctagctctactctcttttgc	CRISPR spacer
cgctcg---ttgtttttctagctctaatttcttttct	Protospacer
   *.*   .**************** *.****** .

28. spacer 5.9|1425484|34|NC_015589|CRT,CRISPRCasFinder matches to NC_018272 (Persicivirga phage P12024L, complete genome) position: , mismatch: 9, identity: 0.735

---ttggacctgtttttctagctctactctcttttgc	CRISPR spacer
cgctcg---ttgtttttctagctctaatttcttttct	Protospacer
   *.*   .**************** *.****** .

29. spacer 5.24|1426477|34|NC_015589|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP019036 (Massilia putida strain 6NM-7 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

tgtctttgcggcttccagttggttaactcgctca	CRISPR spacer
tgtccttgcggcttgcagttggttcagctgcagt	Protospacer
****.********* ********* * ..**

30. spacer 6.21|1436923|36|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 9, identity: 0.75

gcttcgccaccatgccctccaacccctggaccttga	CRISPR spacer
gcttcgagaccatgccctccaaccccgccctgtcga	Protospacer
******  ******************    . *.**

31. spacer 6.21|1436923|36|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015063 (Mesorhizobium ciceri strain CC1192 plasmid pMc1192, complete sequence) position: , mismatch: 9, identity: 0.75

gcttcgccaccatgccctccaacccctggaccttga	CRISPR spacer
gcttcgagaccatgccctccaaccccgccctgtcga	Protospacer
******  ******************    . *.**

32. spacer 6.54|1439123|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to MT840185 (Bacteriophage sp. Joined_contig_19 genomic sequence) position: , mismatch: 9, identity: 0.743

tttttgtaccattaatagttctagaagattataaa	CRISPR spacer
gttagggtccattaatacttctagaggattatagc	Protospacer
 **  *  ********* *******.*******.

33. spacer 7.10|1800705|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to MT774393 (CrAssphage cr127_1, complete genome) position: , mismatch: 9, identity: 0.743

tattttaattattaatataattagtt------aaatatttt	CRISPR spacer
taatataattattaatataattagtctacaagaaa------	Protospacer
** * ********************.      ***

34. spacer 8.10|2490867|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to MK415408 (CrAssphage GF1-2_000079F, complete genome) position: , mismatch: 9, identity: 0.743

ttccattatcccaattaatatcatcccatttaaga---	CRISPR spacer
tttcattaacccaattaatatcatc---agcaaaacgc	Protospacer
**.***** ****************     .**.*

35. spacer 11.6|3091697|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032827 (Sphingomonas sp. YZ-8 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttgcttaaactggatgaaaaaacagggtctattga	CRISPR spacer
tcgcttaaaatggatgaaaaaacaggggggacgtc	Protospacer
*.******* *****************   *.

36. spacer 11.11|3092029|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to MG030346 (Proteus phage PM87, complete genome) position: , mismatch: 9, identity: 0.743

ctagatcgtcctcatcgtctgtggcatcaatttca	CRISPR spacer
acagatcgtcgtcatcgtctgaggcatcatctgat	Protospacer
 .******** ********** ******* .*

37. spacer 11.11|3092029|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to CP059058 (Proteus phage ASh-2020a, complete genome) position: , mismatch: 9, identity: 0.743

ctagatcgtcctcatcgtctgtggcatcaatttca	CRISPR spacer
acagatcgtcgtcatcgtctgaggcatcatctgat	Protospacer
 .******** ********** ******* .*

38. spacer 11.11|3092029|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to MN840486 (Proteus phage P16-2532, complete genome) position: , mismatch: 9, identity: 0.743

ctagatcgtcctcatcgtctgtggcatcaatttca	CRISPR spacer
acagatcgtcgtcatcgtctgaggcatcatctgat	Protospacer
 .******** ********** ******* .*

39. spacer 11.11|3092029|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.743

ctagatcgtcctcatcgtctgtggcatcaatttca	CRISPR spacer
gacgatcctcctcatcgtcggtggcatcgacctcg	Protospacer
   **** *********** ********.*..**.

40. spacer 11.18|3092495|36|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010861 (Marinovum algicola DG 898 plasmid pMaD6, complete sequence) position: , mismatch: 9, identity: 0.75

atcagattggcttgatctttcatttccaccctccct	CRISPR spacer
acaagattggcttcatctttcaattccacaatctgc	Protospacer
*. ********** ******** ******  **. .

41. spacer 1.9|1100905|35|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 10, identity: 0.714

caacgaattcggccatctcctcgcggctgtccttg	CRISPR spacer
cggcgaattcgtccatcgcctcgcggctgatgccc	Protospacer
*..******** ***** *********** . ..

42. spacer 1.11|1101036|34|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021643 (Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence) position: , mismatch: 10, identity: 0.706

ccaaacctttattttgccttcatcgtctatttca	CRISPR spacer
accattggttattttgccttcatcctcttttttt	Protospacer
 * * .  **************** *** ***.

43. spacer 5.11|1425616|34|NC_015589|CRT,CRISPRCasFinder matches to NZ_CP033609 (Weissella hellenica strain 0916-4-2 plasmid pWHSP041, complete sequence) position: , mismatch: 10, identity: 0.706

cctctttgttatacttgtataaaaggggggatta	CRISPR spacer
cctttttgttatacttgtatataatttatggcaa	Protospacer
***.***************** **   . *.. *

44. spacer 5.11|1425616|34|NC_015589|CRT,CRISPRCasFinder matches to NZ_CP042400 (Weissella hellenica strain CBA3632 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cctctttgttatacttgtataaaaggggggatta	CRISPR spacer
cctttttgttatacttgtatataatttatggcaa	Protospacer
***.***************** **   . *.. *

45. spacer 5.11|1425616|34|NC_015589|CRT,CRISPRCasFinder matches to EU874396 (Bacillus phage IEBH, complete genome) position: , mismatch: 10, identity: 0.706

cctctttgttatacttgtataaaaggggggatta	CRISPR spacer
ttttcttgttatacttgtttcaaagggggatgaa	Protospacer
..*..************* * ********.   *

46. spacer 5.11|1425616|34|NC_015589|CRT,CRISPRCasFinder matches to NC_029024 (Bacillus phage 250, complete genome) position: , mismatch: 10, identity: 0.706

cctctttgttatacttgtataaaaggggggatta	CRISPR spacer
ttttcttgttatacttgtttcaaagggggatgaa	Protospacer
..*..************* * ********.   *

47. spacer 5.13|1425748|34|NC_015589|CRT,CRISPRCasFinder matches to NZ_CP033609 (Weissella hellenica strain 0916-4-2 plasmid pWHSP041, complete sequence) position: , mismatch: 10, identity: 0.706

cctctttgttatacttgtataaaaggggggatta	CRISPR spacer
cctttttgttatacttgtatataatttatggcaa	Protospacer
***.***************** **   . *.. *

48. spacer 5.13|1425748|34|NC_015589|CRT,CRISPRCasFinder matches to NZ_CP042400 (Weissella hellenica strain CBA3632 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cctctttgttatacttgtataaaaggggggatta	CRISPR spacer
cctttttgttatacttgtatataatttatggcaa	Protospacer
***.***************** **   . *.. *

49. spacer 5.13|1425748|34|NC_015589|CRT,CRISPRCasFinder matches to EU874396 (Bacillus phage IEBH, complete genome) position: , mismatch: 10, identity: 0.706

cctctttgttatacttgtataaaaggggggatta	CRISPR spacer
ttttcttgttatacttgtttcaaagggggatgaa	Protospacer
..*..************* * ********.   *

50. spacer 5.13|1425748|34|NC_015589|CRT,CRISPRCasFinder matches to NC_029024 (Bacillus phage 250, complete genome) position: , mismatch: 10, identity: 0.706

cctctttgttatacttgtataaaaggggggatta	CRISPR spacer
ttttcttgttatacttgtttcaaagggggatgaa	Protospacer
..*..************* * ********.   *

51. spacer 5.17|1426011|34|NC_015589|CRT,CRISPRCasFinder matches to MN096362 (Arthrobacter phage Vibaki, complete genome) position: , mismatch: 10, identity: 0.706

ctacctggcagggcggcggcaccgtaaaatgcac	CRISPR spacer
acccctggtacggcggcggcaccgtaaccttcga	Protospacer
 . *****.* ****************  * *.

52. spacer 5.23|1426409|36|NC_015589|CRT,CRISPRCasFinder,PILER-CR matches to NC_047754 (Escherichia phage APCEc03, complete genome) position: , mismatch: 10, identity: 0.722

ttttactggtactcctgttcagtctgttccttatgt	CRISPR spacer
tcagactggtactcctgttcagtctcttgctagatc	Protospacer
*.  ********************* ** ** .  .

53. spacer 6.6|1435923|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to KY554772 (Lactococcus phage AM5, complete genome) position: , mismatch: 10, identity: 0.714

aggccaatcgtgtttcaaatccttataggtaggct	CRISPR spacer
aagccaatggtatttcaaatccttatacagtacca	Protospacer
*.****** **.*************** .  . *

54. spacer 6.6|1435923|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NC_049856 (Lactococcus phage AM4, complete genome) position: , mismatch: 10, identity: 0.714

aggccaatcgtgtttcaaatccttataggtaggct	CRISPR spacer
aagccaatggtatttcaaatccttatacagtacca	Protospacer
*.****** **.*************** .  . *

55. spacer 7.28|1801910|34|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 10, identity: 0.706

atatcttcaaaccgttcatccatttgtttcgcag	CRISPR spacer
ttatcttctaaccattcatccatttcattactga	Protospacer
 ******* ****.***********  **  ...

56. spacer 7.28|1801910|34|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 10, identity: 0.706

atatcttcaaaccgttcatccatttgtttcgcag	CRISPR spacer
ttatcttctaaccattcatccatttcattactga	Protospacer
 ******* ****.***********  **  ...

57. spacer 8.10|2490867|35|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to MN657160 (Flavobacterium sp. strain ANT_P5B plasmid pA5BP1, complete sequence) position: , mismatch: 10, identity: 0.714

ttccattatcccaattaatatcatcccatttaaga	CRISPR spacer
gtgagatattccaattaatatcatcccaattccaa	Protospacer
 *  . ***.****************** **  .*

58. spacer 10.42|3060528|36|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032858 (Bacillus subtilis subsp. subtilis strain 2RL2-3 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

ttctttgatgcgtttttgtctgtcatcttggcatcg	CRISPR spacer
tcacttgatccgtttttgactgtcatcttgactgta	Protospacer
*. .***** ******** ***********.*  ..

59. spacer 10.42|3060528|36|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032873 (Bacillus subtilis subsp. subtilis strain 2KL1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

ttctttgatgcgtttttgtctgtcatcttggcatcg	CRISPR spacer
tcacttgatccgtttttgactgtcatcttgactgta	Protospacer
*. .***** ******** ***********.*  ..

60. spacer 10.42|3060528|36|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026534 (Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence) position: , mismatch: 10, identity: 0.722

ttctttgatgcgtttttgtctgtcatcttggcatcg	CRISPR spacer
tcacttgattcgtttttgactgtcatcttgactgta	Protospacer
*. .***** ******** ***********.*  ..

61. spacer 12.5|3100088|38|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.737

tgtta-ctccggcgccgctggtcctgacccccggtgcca	CRISPR spacer
-gcgacctcctgccccgctggtcctgacccccgtccgga	Protospacer
 *. * **** ** ******************* .   *

62. spacer 12.5|3100088|38|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.737

tgtta-ctccggcgccgctggtcctgacccccggtgcca	CRISPR spacer
-gcgacctcctgccccgctggtcctgacccccgtccgga	Protospacer
 *. * **** ** ******************* .   *

63. spacer 12.21|3101166|38|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040721 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.737

cttgcactcttgccccgatccccggcagctttctgaat	CRISPR spacer
gcgtcggtcttgacccgatccccggccgctttctgcaa	Protospacer
 .  *. ***** ************* ******** *

64. spacer 12.21|3101166|38|NC_015589|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040721 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.737

cttgcactcttgccccgatccccggcagctttctgaat	CRISPR spacer
gcgtcggtcttgacccgatccccggccgctttctgcaa	Protospacer
 .  *. ***** ************* ******** *

65. spacer 5.6|1425285|35|NC_015589|CRT,CRISPRCasFinder matches to NZ_CP018464 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence) position: , mismatch: 12, identity: 0.657

cgttgcgtgaagtctttcatggagatctctgagga	CRISPR spacer
gcgtgcgtgatgtccttcatggagatcttcatacg	Protospacer
   ******* ***.*************... . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1102651 : 1126699

Brevibacillus_phage(26.32%)

integrase,terminase,capsid

attL 1097901:1097914|attR 1119100:1119113

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1097901:1097914	attL	NA	NA	NA	NA
WP_013841111.1\|1102651_1103887_-\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	1.2e-106	48.0
WP_013841112.1\|1103978_1104443_-	ImmA/IrrE family metallo-endopeptidase	A0A2I7SC21	Paenibacillus_phage	4.8e-40	49.3
WP_013841114.1\|1105284_1105488_+	helix-turn-helix transcriptional regulator	A0A0C5AJQ3	Paenibacillus_phage	6.0e-11	56.5
WP_013841115.1\|1105488_1106160_+	Rha family transcriptional regulator	A0A2K5B268	Erysipelothrix_phage	4.7e-52	48.2
WP_013841116.1\|1106178_1106481_+	helix-turn-helix domain-containing protein	A0A2I7SC15	Paenibacillus_phage	1.2e-23	54.5
WP_013841117.1\|1106498_1106870_+	hypothetical protein	NA	NA	NA	NA
WP_013841118.1\|1106866_1107328_+	sporulation initiation factor Spo0A C-terminal domain-containing protein	NA	NA	NA	NA
WP_013841119.1\|1107505_1108105_+	hypothetical protein	A0A0A7NP48	Lactobacillus_phage	6.3e-08	53.8
WP_013841120.1\|1108272_1108665_+	hypothetical protein	NA	NA	NA	NA
WP_013841121.1\|1108661_1109840_+	DUF2800 domain-containing protein	S5MUB5	Brevibacillus_phage	5.5e-149	67.7
WP_013841122.1\|1109862_1110429_+	DUF2815 family protein	S5MC21	Brevibacillus_phage	1.7e-71	71.6
WP_013841123.1\|1110433_1112398_+	DNA polymerase	S5M5X4	Brevibacillus_phage	2.3e-256	68.9
WP_013841124.1\|1112416_1112680_+	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	2.3e-15	58.8
WP_013841125.1\|1112686_1113313_+	HNH endonuclease	A0A1S5SBF9	Streptococcus_phage	2.1e-38	43.4
WP_013841126.1\|1113326_1113704_+	hypothetical protein	NA	NA	NA	NA
WP_013841127.1\|1113718_1115341_+	PcfJ domain-containing protein	NA	NA	NA	NA
WP_041275314.1\|1115368_1117819_+	phage-like protein	A0A0A7RTG3	Clostridium_phage	6.1e-243	51.4
WP_041275315.1\|1118085_1118364_+	VRR-NUC domain-containing protein	S5MUC8	Brevibacillus_phage	1.8e-21	55.7
WP_013841130.1\|1118365_1119820_+	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	6.2e-150	58.9
1119100:1119113	attR	NA	NA	NA	NA
WP_041275613.1\|1119795_1120323_+	hypothetical protein	I2E8Y5	Clostridium_phage	5.5e-16	31.4
WP_013841132.1\|1120525_1121005_+	hypothetical protein	NA	NA	NA	NA
WP_013841133.1\|1121052_1121481_+\|terminase	terminase	A0A2R4ALD0	Vibrio_phage	1.4e-41	57.7
WP_081461980.1\|1121464_1122820_+\|terminase	PBSX family phage terminase large subunit	A0A0S0KEN9	Bacillus_phage	5.3e-71	55.4
WP_013841135.1\|1122813_1123038_+	hypothetical protein	NA	NA	NA	NA
WP_013841136.1\|1123034_1124819_+	hypothetical protein	U5PW66	Bacillus_phage	7.7e-86	33.2
WP_013841137.1\|1124894_1125749_+	hypothetical protein	NA	NA	NA	NA
WP_013841138.1\|1125760_1126699_+\|capsid	N4-gp56 family major capsid protein	A0A0S2SXJ0	Bacillus_phage	1.3e-76	48.6

DBSCAN-SWA_2

1134897 : 1143940

Bacillus_phage(16.67%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013841149.1\|1134897_1139130_+	hypothetical protein	A0A0A0RPU4	Bacillus_phage	5.9e-100	31.0
WP_013841150.1\|1139131_1139527_+\|holin	phage holin family protein	D0R7H7	Paenibacillus_phage	1.3e-30	49.6
WP_013841151.1\|1139529_1139817_+	hypothetical protein	A0A249XZT5	Enterococcus_phage	2.4e-21	54.9
WP_013841152.1\|1139809_1140538_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	3.5e-37	51.4
WP_013841154.1\|1141002_1141962_-	hypothetical protein	A0A141E0C6	Streptococcus_phage	2.2e-23	27.3
WP_013841155.1\|1142126_1142582_+	hypothetical protein	NA	NA	NA	NA
WP_013841156.1\|1143616_1143940_-	YnfA family protein	A0A218MNG8	uncultured_virus	4.0e-09	38.6

DBSCAN-SWA_3

1299983 : 1308552

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013841322.1\|1299983_1301276_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	9.7e-22	34.1
WP_013841323.1\|1301293_1302001_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.6e-39	39.1
WP_013841324.1\|1302267_1302516_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_013841325.1\|1302519_1303221_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_013841326.1\|1303221_1305441_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.4e-163	42.6
WP_013841327.1\|1305425_1306850_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.2e-57	36.3
WP_013841328.1\|1306861_1307914_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D8KND6	Synechococcus_phage	1.2e-65	42.9
WP_013841329.1\|1307925_1308552_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.5e-28	41.4

DBSCAN-SWA_4

1329353 : 1359222

Clostridium_phage(76.92%)

protease,portal,tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013841349.1\|1329353_1329635_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_013841350.1\|1329867_1331325_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_013841351.1\|1331339_1332779_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_013841352.1\|1333133_1334267_+	homocitrate synthase	NA	NA	NA	NA
WP_041275329.1\|1334238_1335525_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_013841354.1\|1335534_1336044_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_013841355.1\|1336047_1337046_+	isocitrate dehydrogenase (NAD(+))	NA	NA	NA	NA
WP_013841356.1\|1337344_1337974_+	class I SAM-dependent methyltransferase	A0A097BYE1	Leuconostoc_phage	1.3e-08	26.0
WP_013841357.1\|1338090_1338504_+	hypothetical protein	NA	NA	NA	NA
WP_013841358.1\|1338790_1339216_+	hypothetical protein	A0A0A8WJT3	Clostridium_phage	2.9e-31	44.3
WP_013841359.1\|1339220_1339412_+	hypothetical protein	NA	NA	NA	NA
WP_013841360.1\|1339414_1340719_+\|tail	phage tail sheath family protein	X5JAJ1	Clostridium_phage	1.8e-161	64.1
WP_013841361.1\|1340735_1341203_+\|tail	phage tail tube protein	A0A0A8WJ62	Clostridium_phage	1.9e-60	72.1
WP_013841362.1\|1341221_1341650_+\|portal	phage portal protein	X5JAB6	Clostridium_phage	1.5e-35	52.1
WP_187290616.1\|1341646_1341850_-	hypothetical protein	NA	NA	NA	NA
WP_013841363.1\|1341879_1343514_+	hypothetical protein	X5JAB7	Clostridium_phage	9.7e-43	34.9
WP_013841364.1\|1343513_1344164_+	LysM peptidoglycan-binding domain-containing protein	X5J9Z8	Clostridium_phage	1.4e-40	44.8
WP_013841365.1\|1344156_1345116_+	hypothetical protein	H7BVH4	unidentified_phage	2.5e-99	56.8
WP_013841366.1\|1345108_1345516_+	DUF2577 domain-containing protein	A0A0A7RTW1	Clostridium_phage	6.0e-10	28.2
WP_013841367.1\|1345512_1345914_+	DUF2634 domain-containing protein	A0A0A8WFW6	Clostridium_phage	4.6e-31	50.8
WP_013841368.1\|1345913_1346969_+\|plate	baseplate J/gp47 family protein	A0A0A8WFK0	Clostridium_phage	2.2e-109	55.4
WP_013841369.1\|1346961_1347510_+	DUF2313 domain-containing protein	X5J9Z9	Clostridium_phage	1.3e-23	36.2
WP_013841370.1\|1347509_1347782_+	hypothetical protein	NA	NA	NA	NA
WP_187290617.1\|1348641_1348851_+	hypothetical protein	NA	NA	NA	NA
WP_013841372.1\|1348878_1349238_+	hypothetical protein	NA	NA	NA	NA
WP_013841373.1\|1349230_1349362_+	XkdX family protein	NA	NA	NA	NA
WP_013841374.1\|1349699_1350089_+	carbohydrate-binding protein	NA	NA	NA	NA
WP_013841376.1\|1350705_1351935_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_041275640.1\|1352032_1354510_+	mannose-1-phosphate guanyltransferase	I7I009	Enterobacteria_phage	6.4e-14	30.3
WP_041275641.1\|1354615_1355809_+\|tail	tail protein	NA	NA	NA	NA
WP_013841379.1\|1355845_1356304_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_143758752.1\|1356303_1356996_-	endonuclease III	NA	NA	NA	NA
WP_013841381.1\|1356967_1357390_-	CoA-binding protein	NA	NA	NA	NA
WP_013841382.1\|1357487_1357799_+	LysO family transporter	NA	NA	NA	NA
WP_041275333.1\|1357859_1358462_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_013841384.1\|1358535_1359222_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_5

1768494 : 1795827

Brevibacillus_phage(13.33%)

plate,capsid,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013841769.1\|1768494_1769220_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	1.2e-34	45.6
WP_013841770.1\|1769420_1769594_-	hypothetical protein	NA	NA	NA	NA
WP_013841771.1\|1769605_1770925_-	hypothetical protein	S5MNY5	Brevibacillus_phage	7.4e-09	50.6
WP_143758871.1\|1770938_1771469_-	DUF2313 domain-containing protein	S6BFJ0	Thermus_phage	5.4e-19	34.7
WP_013841773.1\|1771486_1772602_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	4.7e-25	28.3
WP_041275356.1\|1772582_1772990_-	GPW/gp25 family protein	A0A0A7NNN0	Lactobacillus_phage	2.6e-05	31.0
WP_013841775.1\|1772994_1773369_-	hypothetical protein	NA	NA	NA	NA
WP_143758766.1\|1773371_1774436_-	hypothetical protein	NA	NA	NA	NA
WP_013841777.1\|1774441_1775014_-	LysM peptidoglycan-binding domain-containing protein	H7BV89	unidentified_phage	5.6e-06	48.3
WP_013841778.1\|1775031_1777089_-\|tail	phage tail tape measure protein	S5MBW5	Brevibacillus_phage	2.1e-10	46.3
WP_013841779.1\|1777169_1777382_+	hypothetical protein	NA	NA	NA	NA
WP_013841780.1\|1777470_1777866_-	hypothetical protein	NA	NA	NA	NA
WP_013841781.1\|1777883_1778318_-	hypothetical protein	NA	NA	NA	NA
WP_013841782.1\|1778307_1778532_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_013841783.1\|1778546_1779953_-\|tail	phage tail sheath subtilisin-like domain-containing protein	NA	NA	NA	NA
WP_013841784.1\|1779970_1780450_-	hypothetical protein	NA	NA	NA	NA
WP_013841785.1\|1780442_1781045_-	phage virion morphogenesis protein	NA	NA	NA	NA
WP_143758872.1\|1781041_1781467_-	DUF1320 family protein	NA	NA	NA	NA
WP_143758873.1\|1781509_1782835_-\|capsid	major capsid protein	NA	NA	NA	NA
WP_013841788.1\|1782996_1783989_-	hypothetical protein	NA	NA	NA	NA
WP_013841789.1\|1784005_1784830_-\|capsid	minor capsid protein	NA	NA	NA	NA
WP_013841790.1\|1784819_1786091_-	DUF935 family protein	R9U4B4	Rhizobium_phage	9.2e-17	29.0
WP_013841791.1\|1786103_1787744_-\|terminase	phage terminase large subunit family protein	W6AT15	Vibrio_phage	4.7e-21	22.9
WP_013841792.1\|1787744_1788281_-	DUF3486 family protein	NA	NA	NA	NA
WP_013841793.1\|1788280_1788583_-	hypothetical protein	NA	NA	NA	NA
WP_013841794.1\|1788560_1788905_-	hypothetical protein	NA	NA	NA	NA
WP_013841795.1\|1788906_1789332_-	hypothetical protein	NA	NA	NA	NA
WP_013841796.1\|1789477_1789807_-	Mor transcription activator domain-containing protein	NA	NA	NA	NA
WP_013841797.1\|1789810_1790203_-	DUF1018 domain-containing protein	A0A0N7AE60	Bacillus_phage	6.7e-27	49.6
WP_013841798.1\|1790215_1790707_-	host-nuclease inhibitor Gam family protein	NA	NA	NA	NA
WP_041275357.1\|1790719_1791133_-	hypothetical protein	A0A0M4U437	Ralstonia_phage	7.1e-11	36.1
WP_013841800.1\|1791151_1791625_-	hypothetical protein	R9U4A4	Rhizobium_phage	7.1e-15	37.5
WP_187290630.1\|1791721_1791880_+	hypothetical protein	NA	NA	NA	NA
WP_013841801.1\|1792084_1792318_-	hypothetical protein	NA	NA	NA	NA
WP_049786747.1\|1792340_1792727_-	3D domain-containing protein	L0LBX4	Bacillus_phage	1.5e-15	38.5
WP_013841802.1\|1792731_1793526_-	ATP-binding protein	H7BWC4	unidentified_phage	1.7e-16	33.3
WP_013841803.1\|1793428_1793818_-	hypothetical protein	NA	NA	NA	NA
WP_013841804.1\|1793834_1794206_-	hypothetical protein	NA	NA	NA	NA
WP_013841805.1\|1794336_1794840_-	hypothetical protein	NA	NA	NA	NA
WP_013841806.1\|1794852_1795827_-	AAA family ATPase	B5TA81	Burkholderia_phage	7.1e-09	24.4

DBSCAN-SWA_6

1881729 : 1942017

Bacillus_virus(33.33%)

tRNA,protease,transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013841889.1\|1881729_1883061_+\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_013841890.1\|1883131_1884028_+	tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	1.9e-32	29.4
WP_187290650.1\|1884049_1884586_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_013841892.1\|1884635_1886036_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A173GFL6	Erwinia_phage	5.4e-42	28.8
WP_013841893.1\|1886055_1886841_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_013841894.1\|1887105_1887804_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_013841895.1\|1887934_1888588_+	translation elongation factor Ts	NA	NA	NA	NA
WP_013841896.1\|1888674_1889394_+	UMP kinase	NA	NA	NA	NA
WP_013841897.1\|1889395_1889950_+	ribosome recycling factor	NA	NA	NA	NA
WP_013841899.1\|1890164_1890329_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_013841900.1\|1890381_1891170_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	8.0e-27	44.4
WP_013841901.1\|1891184_1891970_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_041275707.1\|1891998_1893087_+	sporulation integral membrane protein YtvI	NA	NA	NA	NA
WP_013841903.1\|1893110_1894268_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_013841904.1\|1894278_1895322_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_013841905.1\|1895336_1896386_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_013841906.1\|1896414_1898121_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_013841907.1\|1898130_1899297_+	glycosyltransferase	NA	NA	NA	NA
WP_013841908.1\|1899328_1903606_+	PolC-type DNA polymerase III	U5PWN8	Bacillus_virus	5.3e-16	37.1
WP_013841909.1\|1903612_1904917_-	hypothetical protein	NA	NA	NA	NA
WP_143758876.1\|1905102_1906032_+	delta-lactam-biosynthetic de-N-acetylase	NA	NA	NA	NA
WP_013841911.1\|1906233_1906758_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_013841912.1\|1906825_1907908_+	DUF4179 domain-containing protein	NA	NA	NA	NA
WP_041275364.1\|1907978_1908278_-	hypothetical protein	NA	NA	NA	NA
WP_143758753.1\|1908881_1909987_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-55	43.2
WP_187290633.1\|1910013_1910178_-	hypothetical protein	NA	NA	NA	NA
WP_013841913.1\|1911671_1911887_-	hypothetical protein	NA	NA	NA	NA
WP_013841914.1\|1912549_1912774_+	hypothetical protein	NA	NA	NA	NA
WP_013841915.1\|1912970_1914005_+	PHP domain-containing protein	NA	NA	NA	NA
WP_013841916.1\|1914111_1914411_+	LapA family protein	NA	NA	NA	NA
WP_013841917.1\|1914604_1915066_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_013841918.1\|1915089_1916256_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_013841919.1\|1916268_1916535_+	YlxR family protein	NA	NA	NA	NA
WP_013841920.1\|1916535_1916847_+	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA
WP_013841921.1\|1916884_1919923_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.7e-24	27.8
WP_013841922.1\|1919954_1920317_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_013841923.1\|1920309_1921281_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	G3MA01	Bacillus_virus	4.6e-32	33.8
WP_013841924.1\|1921282_1922218_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_013841925.1\|1922303_1923227_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_013841926.1\|1923364_1923595_+	hypothetical protein	NA	NA	NA	NA
WP_013841927.1\|1923606_1923828_+	hypothetical protein	NA	NA	NA	NA
WP_013841928.1\|1923916_1924186_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_013841929.1\|1924342_1926568_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_041275710.1\|1926783_1927476_+	spore cortex-lytic enzyme	A0A172JHR8	Bacillus_phage	2.0e-18	40.2
WP_013841931.1\|1927546_1928185_-	PASTA domain-containing protein	NA	NA	NA	NA
WP_013841932.1\|1928398_1929139_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_013841933.1\|1929268_1930537_+	insulinase family protein	G3MBJ8	Bacillus_virus	8.8e-60	33.6
WP_013841934.1\|1930652_1930994_+	hypothetical protein	NA	NA	NA	NA
WP_013841935.1\|1931006_1931276_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA
WP_013841936.1\|1931516_1932317_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_013841937.1\|1932424_1933327_+	dipicolinate synthase subunit DpsA	NA	NA	NA	NA
WP_013841938.1\|1933353_1933941_+	dipicolinate synthase subunit B	NA	NA	NA	NA
WP_013841939.1\|1933988_1935011_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013841940.1\|1935013_1936249_+	aspartate kinase	NA	NA	NA	NA
WP_013841941.1\|1936292_1937183_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_013841942.1\|1937407_1939072_+	ribonuclease J	NA	NA	NA	NA
WP_013841943.1\|1939306_1939963_+	hypothetical protein	NA	NA	NA	NA
WP_013841944.1\|1940352_1941174_+\|protease	ClpP family protease	NA	NA	NA	NA
WP_013841945.1\|1941170_1941386_+	YlzJ-like family protein	NA	NA	NA	NA
WP_013841946.1\|1941600_1942017_-\|coat	spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_7

3229086 : 3238432

Bacillus_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013843130.1\|3229086_3229461_-	Fe-S cluster assembly scaffold protein NifU	A0A2H4N7M4	Lake_Baikal_phage	1.5e-31	56.1
WP_013843131.1\|3229497_3230745_-	cysteine desulfurase NifS	H7BUW1	unidentified_phage	4.5e-40	39.7
WP_013843132.1\|3230788_3231232_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_013843133.1\|3231457_3231784_-	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	3.3e-19	41.0
WP_041275837.1\|3231889_3232618_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	S4VW33	Pandoravirus	4.8e-26	39.3
WP_013843135.1\|3232922_3234374_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.3e-26	28.4
WP_013843136.1\|3234373_3235048_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.1e-40	38.7
WP_013843137.1\|3235077_3236199_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	1.2e-20	28.2
WP_013843138.1\|3236623_3238432_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	2.8e-11	27.2

DBSCAN-SWA_8

3541469 : 3629594

Erysipelothrix_phage(31.25%)

protease,transposase,capsid,portal,head,holin,terminase,integrase,tail,plate

attL 3627830:3627846|attR 3630135:3630151

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013843437.1\|3541469_3541760_-	hypothetical protein	A0A0Y0AE86	Bacillus_phage	7.0e-05	44.9
WP_013843438.1\|3541775_3542771_-	hypothetical protein	A0A1L2K2Q1	Aeribacillus_phage	5.0e-26	52.1
WP_013843439.1\|3542788_3543031_-	hypothetical protein	NA	NA	NA	NA
WP_013843440.1\|3543077_3543209_-	XkdX family protein	NA	NA	NA	NA
WP_013843441.1\|3543240_3543828_-	YmfQ family protein	S6BFJ0	Thermus_phage	1.9e-33	45.1
WP_013843442.1\|3543824_3544937_-\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	7.2e-58	42.0
WP_013843443.1\|3544933_3545383_-	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	1.1e-25	37.0
WP_013843444.1\|3545383_3545791_-	hypothetical protein	NA	NA	NA	NA
WP_041275876.1\|3545777_3546779_-	hypothetical protein	A0A0N6W8H4	Bacillus_phage	2.2e-98	53.9
WP_013843446.1\|3546778_3547423_-	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	1.0e-48	49.5
WP_013843447.1\|3547446_3548949_-	hypothetical protein	A0A0N7ACN7	Bacillus_phage	8.9e-19	43.8
WP_013843448.1\|3548945_3549092_-	hypothetical protein	NA	NA	NA	NA
WP_013843449.1\|3549112_3549520_-	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	1.0e-30	47.8
WP_013843450.1\|3549530_3549941_-\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	5.9e-42	57.9
WP_013843451.1\|3549953_3551405_-\|tail	phage tail sheath family protein	A0A0N7AEC6	Bacillus_phage	1.9e-98	42.4
WP_013843452.1\|3551404_3551590_-	hypothetical protein	NA	NA	NA	NA
WP_013843453.1\|3551589_3552570_-	hypothetical protein	NA	NA	NA	NA
WP_041275473.1\|3552880_3553411_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013843456.1\|3553762_3554425_+	LexA family transcriptional regulator	NA	NA	NA	NA
WP_013843457.1\|3554702_3556115_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	3.8e-112	48.2
WP_013843458.1\|3556196_3558212_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_013843459.1\|3558823_3560299_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_013843460.1\|3560327_3560573_-	hypothetical protein	NA	NA	NA	NA
WP_013843461.1\|3560650_3561409_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_013843462.1\|3561529_3562345_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_049786813.1\|3562514_3563315_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_013843464.1\|3563320_3563923_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013843465.1\|3564331_3565156_-	DUF4915 domain-containing protein	NA	NA	NA	NA
WP_013843466.1\|3565555_3567778_-	TIGR03986 family CRISPR-associated RAMP protein	NA	NA	NA	NA
WP_143758815.1\|3567779_3568184_-	hypothetical protein	NA	NA	NA	NA
WP_013843468.1\|3568210_3569548_-	hypothetical protein	NA	NA	NA	NA
WP_041275474.1\|3569544_3571185_-	hypothetical protein	NA	NA	NA	NA
WP_013843470.1\|3571181_3571856_-	hypothetical protein	NA	NA	NA	NA
WP_013843471.1\|3571852_3573484_-	hypothetical protein	NA	NA	NA	NA
WP_013843472.1\|3573494_3574412_-	hypothetical protein	NA	NA	NA	NA
WP_013843473.1\|3574856_3576215_-	hypothetical protein	NA	NA	NA	NA
WP_013843474.1\|3577129_3577717_-	DUF3841 domain-containing protein	NA	NA	NA	NA
WP_013843475.1\|3578371_3579787_-	hypothetical protein	O64086	Bacillus_phage	1.5e-23	29.6
WP_013843476.1\|3579808_3581131_-	hypothetical protein	NA	NA	NA	NA
WP_013843477.1\|3581130_3582792_-	hypothetical protein	NA	NA	NA	NA
WP_013843478.1\|3582919_3584503_-	recombinase family protein	Q6DMS5	Streptococcus_phage	1.0e-145	52.2
WP_013843479.1\|3584499_3585810_-	recombinase family protein	E4ZFN8	Streptococcus_phage	2.2e-74	43.5
WP_187290589.1\|3585857_3586025_-	hypothetical protein	NA	NA	NA	NA
WP_013843480.1\|3586017_3586425_-	sigma-70 region 4 domain-containing protein	NA	NA	NA	NA
WP_013843481.1\|3586630_3587338_-	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGH1	Paenibacillus_phage	1.8e-25	35.1
WP_013843482.1\|3587330_3587732_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	1.0e-38	67.5
WP_013843483.1\|3587805_3588225_-	hypothetical protein	NA	NA	NA	NA
WP_013843484.1\|3588243_3588771_-	hypothetical protein	NA	NA	NA	NA
WP_013843485.1\|3588770_3589502_-	hypothetical protein	NA	NA	NA	NA
WP_013843486.1\|3589514_3589925_-	hypothetical protein	NA	NA	NA	NA
WP_013843487.1\|3589926_3590268_-	hypothetical protein	NA	NA	NA	NA
WP_013843488.1\|3590279_3590891_-	hypothetical protein	NA	NA	NA	NA
WP_013843489.1\|3590895_3592308_-	hypothetical protein	NA	NA	NA	NA
WP_013843490.1\|3592300_3595444_-	G-protein gamma-like subunit	A8ATH6	Listeria_phage	1.6e-54	45.9
WP_187290590.1\|3595458_3595620_-	hypothetical protein	NA	NA	NA	NA
WP_013843491.1\|3595664_3595961_-	hypothetical protein	NA	NA	NA	NA
WP_013843492.1\|3596009_3596894_-	Ig-like domain-containing protein	A0A1L2BYA0	Clostridium_phage	3.5e-31	41.1
WP_013843493.1\|3596897_3597266_-	DUF3168 domain-containing protein	A0A2H4JAR3	uncultured_Caudovirales_phage	9.8e-20	46.5
WP_041275884.1\|3597262_3597619_-	HK97 gp10 family phage protein	H0USW9	Bacillus_phage	2.9e-13	34.6
WP_013843495.1\|3597635_3597974_-\|head	phage head closure protein	K7PH08	Enterobacteria_phage	1.4e-12	41.7
WP_013843496.1\|3597976_3598252_-\|head,tail	phage gp6-like head-tail connector protein	A0A1B0RXE3	Streptococcus_phage	7.6e-09	40.4
WP_013843497.1\|3598270_3598600_-	hypothetical protein	A0A2K5B289	Erysipelothrix_phage	7.7e-08	40.2
WP_013843498.1\|3598609_3599809_-\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	1.5e-178	78.4
WP_013843499.1\|3599825_3600533_-\|protease	Clp protease ClpP	E4ZFM4	Streptococcus_phage	3.0e-65	57.3
WP_041275886.1\|3600529_3601747_-\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	6.5e-161	66.6
WP_013843501.1\|3601836_3602808_-	copper amine oxidase N-terminal domain-containing protein	NA	NA	NA	NA
WP_041275476.1\|3602893_3604495_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	2.0e-274	85.9
WP_013843503.1\|3604579_3604768_-	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_013843504.1\|3604773_3605223_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_013843505.1\|3605261_3606161_-	amidoligase family protein	A0A2K9V489	Faecalibacterium_phage	2.9e-49	40.1
WP_013843506.1\|3606303_3606531_-	DUF4314 domain-containing protein	E4ZFL7	Streptococcus_phage	6.9e-08	42.9
WP_013843507.1\|3606527_3607187_-	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	1.6e-49	45.4
WP_013843508.1\|3607252_3608488_-	site-specific DNA-methyltransferase	A0A2I4R670	Erysipelothrix_phage	9.2e-147	62.6
WP_013843509.1\|3608494_3609073_-\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	1.8e-52	53.6
WP_049786814.1\|3609318_3609660_+	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_013843511.1\|3609659_3609950_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_013843512.1\|3609989_3610343_-	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	4.8e-40	61.0
WP_013843513.1\|3610472_3610922_-	hypothetical protein	NA	NA	NA	NA
WP_013843514.1\|3610918_3612274_-	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	1.6e-168	72.6
WP_041275887.1\|3612254_3612536_-	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	1.7e-27	70.0
WP_013843516.1\|3612875_3615227_-	virulence-associated E family protein	A0A1W6JQ82	Corynebacterium_phage	1.5e-222	48.3
WP_013843517.1\|3615223_3615637_-	hypothetical protein	A0A2K5B270	Erysipelothrix_phage	1.2e-29	53.8
WP_013843518.1\|3615623_3616409_-	phage antirepressor Ant	A0A0C5AEJ9	Bacteriophage	3.5e-83	60.5
WP_041275889.1\|3616504_3618439_-	XRE family transcriptional regulator	A0A2K5B2B0	Erysipelothrix_phage	1.6e-254	65.7
WP_013843520.1\|3618435_3619014_-	HNH endonuclease	A0A0E3T8A7	Gordonia_phage	1.1e-20	43.0
WP_013843521.1\|3619010_3619589_-	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	2.1e-64	69.4
WP_013843522.1\|3619593_3620721_-	DUF2800 domain-containing protein	A0A2K5B2A8	Erysipelothrix_phage	3.7e-150	69.6
WP_013843523.1\|3620717_3621041_-	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	1.7e-15	48.1
WP_013843525.1\|3621309_3621693_-	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_013843526.1\|3621855_3622005_-	hypothetical protein	NA	NA	NA	NA
WP_013843527.1\|3622351_3623335_+	hypothetical protein	NA	NA	NA	NA
WP_013843528.1\|3623327_3623789_+	hypothetical protein	NA	NA	NA	NA
WP_013843529.1\|3623781_3625557_+	AAA family ATPase	NA	NA	NA	NA
WP_013843530.1\|3625581_3625806_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	3.2e-13	51.9
WP_013843531.1\|3625813_3627355_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	1.8e-43	31.4
WP_013843532.1\|3627344_3627854_+	restriction endonuclease subunit S	A0A240FAT6	Liberibacter_phage	1.5e-23	36.9
3627830:3627846	attL	NA	NA	NA	NA
WP_143758816.1\|3627850_3628564_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013843533.1\|3628601_3629594_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	2.5e-38	29.8
3630135:3630151	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3763511 : 3772128

Catovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013843642.1\|3763511_3764666_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.4e-24	27.1
WP_013843643.1\|3764775_3765087_-	MazG-like family protein	NA	NA	NA	NA
WP_013843644.1\|3765136_3765586_-	cytidine/deoxycytidylate deaminase family protein	A7KUY9	Bacillus_phage	6.8e-23	38.8
WP_013843645.1\|3765786_3767025_-	serine hydroxymethyltransferase	G9I092	Helicoverpa_zea_nudivirus	5.0e-100	48.1
WP_041275484.1\|3767072_3767558_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_013843647.1\|3767645_3768101_-	low molecular weight protein arginine phosphatase	A0A2H4PQT9	Staphylococcus_phage	3.8e-05	29.5
WP_041275902.1\|3768207_3768747_-	manganese efflux pump	NA	NA	NA	NA
WP_013843649.1\|3768868_3769936_-	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	3.2e-55	42.6
WP_013843650.1\|3770018_3770876_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_013843651.1\|3771057_3772128_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	4.7e-06	36.6

Anti-CRISPR protein detection

Acr_ID: NC_015589.1|WP_013841120.1|1108272_1108665_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_015589.1|WP_013841120.1|1108272_1108665_+|hypothetical-protein

1108272_1108665_+

130 aa aa

1102651-1126699

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_015589_10	TypeI-B	10.11\|3058474\|37\|NC_015589\|CRISPRCasFinder,CRT,PILER-CR	3058474-3058510	37	1106249-1106213	1

1. spacer 10.11|3058474|37|NC_015589|CRISPRCasFinder,CRT,PILER-CR matches to NC_015589 position: 1106249-1106213, mismatch: 1

aaaactcttctttcagcttcggcggctgcagtttgga	CRISPR spacer
aaaactcttctttcagcttcggcggctgcagtctgga	Protospacer
********************************.****

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015589

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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