CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017574	Ralstonia solanacearum Po82, complete sequence	2 crisprs	DEDDh,cas3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	0	20	7	0
NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	0 crisprs	csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017574_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017574_1

1127636-1128517

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGTGGGCGGGGATGAACCG	PILER-CR
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CRISPRCasFinder
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CRT

14 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

The CRISPR arrays of NC_017574_1

>merge|NC_017574|1|1127636-1128517|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGTGGGCGGGGATGAACCGCATATCTACCTGAACGAAACTAAGCGGCTCATGTGTTCCCCGCGTGGGCGGGGATGAACCGCGCGCCGAGCGTCCGTTCCGCCCGTGGCAACAGTGTTCCCCGCGTGGGCGGGGATGAACCGCTCGGCGCGCTTGATGGTGCGGCGTCGCGGGAGTGTTCCCCGCGTGGGCGGGGATGAACCGGCCAGACCCCACATCGCGAGAATCCCAGCCCCGTGTTCCCCGCGTGGGCGGGGATGAACCGAAATATCTGAAGCAACTGGGCCTGGGTGCTGCGTGTTCCCCGCGTGGGCGGGGATGAACCGACGATGCGGCCGGGCATGGTTCATCGAATGACGTGTTCCCCGCGTGGGCGGGGATGAACCGCCAACAACGAACTGGCTACTGCCATTCGTCGGCGTGTTCCCCGCGTGGGCGGGGATGAACCGCTCGCTTTGAACATGTGGGAGAGCGAACGCAGGTGTTCCCCGCGTGGGCGGGGATGAACCGGCTTCATATTCATCGGCGGGGTGCATGTCTTCGTGTTCCCTGCGTGGGCGGGGATGAACCGGCGCTGGCGAAGGGTCAGTCGCAGCCGGTCACGTGTTCCCCGCGCGGGCGGGGATGAACCGCGCCTGAAGCACGGCGGCAATGCGGTGCTGCGGTGTTCTCCGCGTGGGCGGGGATGAACCGACGGGTTGGGCACCGCTGTATGAACACTGGCTGTGTTCCCCGCGTAGGTGGGGATGAACCGGGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTCGTATTCCCCGCTCAGGCGGGGATGTGCCGCTGCGCCAACAGCTTACCGTTGATCGTGCCGCGTCCCCCGCATGTGCGGGGATCAGCCT

>NC_017574|1|1|1127636-1128336|PILER-CR
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CATATCTACCTGAACGAAACTAAGCGGCTCAT
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CGCGCCGAGCGTCCGTTCCGCCCGTGGCAACA
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CTCGGCGCGCTTGATGGTGCGGCGTCGCGGGA
GTGTTCCCCGCGTGGGCGGGGATGAACCG	GCCAGACCCCACATCGCGAGAATCCCAGCCCC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	AAATATCTGAAGCAACTGGGCCTGGGTGCTGC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	ACGATGCGGCCGGGCATGGTTCATCGAATGAC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CCAACAACGAACTGGCTACTGCCATTCGTCGGC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CTCGCTTTGAACATGTGGGAGAGCGAACGCAG
GTGTTCCCCGCGTGGGCGGGGATGAACCG	GCTTCATATTCATCGGCGGGGTGCATGTCTTC
GTGTTCCCTGCGTGGGCGGGGATGAACCG	GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC
GTGTTCCCCGCGCGGGCGGGGATGAACCG	CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG
GTGTTCTCCGCGTGGGCGGGGATGAACCG

>NC_017574|1|1|1127636-1128517|CRISPRCasFinder
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CATATCTACCTGAACGAAACTAAGCGGCTCAT
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CGCGCCGAGCGTCCGTTCCGCCCGTGGCAACA
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CTCGGCGCGCTTGATGGTGCGGCGTCGCGGGA
GTGTTCCCCGCGTGGGCGGGGATGAACCG	GCCAGACCCCACATCGCGAGAATCCCAGCCCC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	AAATATCTGAAGCAACTGGGCCTGGGTGCTGC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	ACGATGCGGCCGGGCATGGTTCATCGAATGAC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CCAACAACGAACTGGCTACTGCCATTCGTCGGC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CTCGCTTTGAACATGTGGGAGAGCGAACGCAG
GTGTTCCCCGCGTGGGCGGGGATGAACCG	GCTTCATATTCATCGGCGGGGTGCATGTCTTC
GTGTTCCCTGCGTGGGCGGGGATGAACCG	GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC
GTGTTCCCCGCGCGGGCGGGGATGAACCG	CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG
GTGTTCTCCGCGTGGGCGGGGATGAACCG	ACGGGTTGGGCACCGCTGTATGAACACTGGCT
GTGTTCCCCGCGTAGGTGGGGATGAACCG	GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC
GTATTCCCCGCTCAGGCGGGGATGTGCCG	CTGCGCCAACAGCTTACCGTTGATCGTGCC
GCGTCCCCCGCATGTGCGGGGATCAGCCT

>NC_017574|1|1|1127636-1128458|CRT
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CATATCTACCTGAACGAAACTAAGCGGCTCAT
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CGCGCCGAGCGTCCGTTCCGCCCGTGGCAACA
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CTCGGCGCGCTTGATGGTGCGGCGTCGCGGGA
GTGTTCCCCGCGTGGGCGGGGATGAACCG	GCCAGACCCCACATCGCGAGAATCCCAGCCCC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	AAATATCTGAAGCAACTGGGCCTGGGTGCTGC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	ACGATGCGGCCGGGCATGGTTCATCGAATGAC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CCAACAACGAACTGGCTACTGCCATTCGTCGGC
GTGTTCCCCGCGTGGGCGGGGATGAACCG	CTCGCTTTGAACATGTGGGAGAGCGAACGCAG
GTGTTCCCCGCGTGGGCGGGGATGAACCG	GCTTCATATTCATCGGCGGGGTGCATGTCTTC
GTGTTCCCTGCGTGGGCGGGGATGAACCG	GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC
GTGTTCCCCGCGCGGGCGGGGATGAACCG	CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG
GTGTTCTCCGCGTGGGCGGGGATGAACCG	ACGGGTTGGGCACCGCTGTATGAACACTGGCT
GTGTTCCCCGCGTAGGTGGGGATGAACCG	GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC
GTATTCCCCGCTCAGGCGGGGATGTGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017574.1\|WP_014616409.1\|1134718_1135492_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_017574.1\|WP_014616401.1\|1122543_1122867_+\|hypothetical-protein	unknown	unknown	unknown
NC_017574.1\|WP_014616410.1\|1135488_1136157_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|215025
NC_017574.1\|WP_014616403.1\|1124619_1125186_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NC_017574.1\|WP_014616405.1\|1128725_1131458_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_017574.1\|WP_014616400.1\|1121354_1122518_+\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|225419
NC_017574.1\|WP_014616414.1\|1140098_1140818_-\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227648
NC_017574.1\|WP_014616411.1\|1136161_1137079_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_017574.1\|WP_042548987.1\|1131495_1133064_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_017574.1\|WP_014616398.1\|1120395_1121082_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NC_017574.1\|WP_014616412.1\|1137075_1137375_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_017574.1\|WP_014616404.1\|1125267_1127547_+\|arginine/lysine/ornithine-decarboxylase	unknown	unknown	gnl\|CDD\|224893
NC_017574.1\|WP_003273050.1\|1122945_1123482_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NC_017574.1\|WP_042549223.1\|1121084_1121333_+\|hypothetical-protein	unknown	unknown	unknown
NC_017574.1\|WP_014616402.1\|1123576_1124452_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|376873
NC_017574.1\|WP_014616413.1\|1138573_1139989_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NC_017574.1\|WP_014616397.1\|1117383_1120380_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239153
NC_017574.1\|WP_039547674.1\|1117098_1117329_+\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|274310
NC_017574.1\|WP_014616407.1\|1133060_1133660_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_017574.1\|WP_014616408.1\|1133679_1134714_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153

Protein	Function_ID	Function_description	E-value
NC_017574.1\|WP_014616410.1\|1135488_1136157_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.76887e-45
NC_017574.1\|WP_014616403.1\|1124619_1125186_+\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	7.2762e-115
NC_017574.1\|WP_014616405.1\|1128725_1131458_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.59792e-124
NC_017574.1\|WP_014616400.1\|1121354_1122518_+\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|225419	COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase [Energy production and conversion].	6.44239e-82
NC_017574.1\|WP_014616398.1\|1120395_1121082_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	8.28675e-60
NC_017574.1\|WP_014616411.1\|1136161_1137079_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	5.15782e-152
NC_017574.1\|WP_042548987.1\|1131495_1133064_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	5.00759e-136
NC_017574.1\|WP_014616407.1\|1133060_1133660_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.3476e-23
NC_017574.1\|WP_014616414.1\|1140098_1140818_-\|anti-sigma-factor	gnl\|CDD\|227648	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown].	9.28921e-85
NC_017574.1\|WP_014616412.1\|1137075_1137375_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.19797e-60
NC_017574.1\|WP_014616404.1\|1125267_1127547_+\|arginine/lysine/ornithine-decarboxylase	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	0
NC_017574.1\|WP_003273050.1\|1122945_1123482_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	5.56442e-52
NC_017574.1\|WP_014616409.1\|1134718_1135492_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.03368e-40
NC_017574.1\|WP_014616402.1\|1123576_1124452_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|376873	pfam02634, FdhD-NarQ, FdhD/NarQ family. A pan-bacterial lineage of proteins. Nitrate assimilation protein, NarQ, and FdhD are required for formate dehydrogenase activity. Structurally, they possess a deaminase fold with a characteristic binding pocket, suggesting that they might bind a nucleotide or related molecule allosterically to regulate the formate dehydrogenase catalytic subunit.	1.16012e-101
NC_017574.1\|WP_014616413.1\|1138573_1139989_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NC_017574.1\|WP_014616397.1\|1117383_1120380_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_017574.1\|WP_039547674.1\|1117098_1117329_+\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|274310	TIGR02811, formate_dehydrogenase_accessory_protein_FdhX, formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein. [Unknown function, General].	6.59427e-10
NC_017574.1\|WP_014616408.1\|1133679_1134714_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.3418e-107

>NC_017574.1|WP_014616404.1|1125267_1127547_+|arginine/lysine/ornithine-decarboxylase
MKFRFPVIIIDEDFRSENISGSGIRALAQAIEEEGMEVTGLTSYGDLTSFAQQSSRASTFIVSIDDDEFINPDNDKPEPEAVENLRAFVAEVRRRNADIPIFLYGETRTSRHLPNDVLRELHGFIHMFEDTPEFVARHIIREARNYLDSLPPPFFKALIDYAQDSSYSWHCPGHSGGVAFLKSPVGQVFHQFFGENMLRADVCNAVDELGQLLDHTGPVAASERNAARIFGSDHMFFVTNGTSTSNKMVWHANVAPGDIVVVDRNCHKSILHAIMMTGAIPVFLMPTRNHYGIIGPIPQSEFEPETIARKIAEHPFASQAKNKKPRILTITQGTYDGVLYNAERIKHMLSTEIDTLHFDEAWLPHAAFHPFYRDMHAIGQGRSRSKDALVFATQSTHKLLAGLSQASQILVQDSETRKLDTYRFNEAYLMHTSTSPQYSIIASCDVAAAMMEAPGGTALVEESIAEALDFRRAMRKVEQEYVGTNGGNGRGDDWWFKVWGPNDLSDEGIEEREAWMLKANERWHGFGDLAEDFNLLDPIKATIITPGLDVDGKFSESGIPAAIVTKYLAEHGIIVEKTGLYSFFIMFTIGITKGRWNSLVTELQQFKDDYDNNQPLWRVLPEFVRQYPQYERIGLRELCDGIHSVYKANDVARVTTEMYLSNMEPAMKPSDAWAKMAHRETERVAIDDLEGRITAILLTPYPPGIPLLIPGERFNRTIVQYLQFARDFNKLFPGFETDIHGLVEEEIDDKVGYFVDCVR
>NC_017574.1|WP_014616403.1|1124619_1125186_+|dCTP-deaminase
MSIKSDKWIRRMAEQHGMIEPFEPGQVRESEGRRIVSYGTSSYGYDIRCANEFKIFTNINSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTMEYFRIPRTVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEPCETSYKDRGGKYQGQQGVTLPKT
>NC_017574.1|WP_014616402.1|1123576_1124452_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MPLRPELTNASVPLLDEVDVVDELGHVRAVHIPGERPLTVYLDKRELVTLMTLGGAPEALVLGYLRNQRLVDSIEDIAAVQVDWETESAAVTTRAGIADLDEKTAHRTVTTGCGQGTVFGSLMDEIDAVHLPPEARITQTTLYRVVDTIRLQQSIYKQAGSVHGCALFDAQGTLLMFIEDVGRHNAVDAIAGRMWLEDMGGGDKIFYTTGRLTSEMVIKGAQMGIPFLLSRSGVTQMGYQMAQRVNLTLFARCTGRHFLLYTGRERFIAEPEMAGVVGPRGELPQPAESGR
>NC_017574.1|WP_003273050.1|1122945_1123482_+|superoxide-dismutase-family-protein
MKQLVIGLAAIGLMAGCASNAGTGAPAASASASATLAPKSGSNVQGTIKLLQQGDNRVAMAVDIAGLPPNGMFGFHVHEKGDCSAPDGMSAGGHFNPTGQPHGDPRSGPHHAGDIPMLQSDANGKAAGSIVLNGVTLAPGPTSLVGHAVIVHSGMDDYKTQPTGNSGGRIACGVIVAN
>NC_017574.1|WP_014616401.1|1122543_1122867_+|hypothetical-protein
MTGSVKKMHPLGTWLAAAVLGLASAAAGARLPAPTEAQKAKAEVDKAKAAWSDKVAAFQLCQAQDRAVAQYQASGKGTRGQAGAPCADPGPFMPPAPAAVATPAPKG
>NC_017574.1|WP_014616400.1|1121354_1122518_+|formate-dehydrogenase-subunit-gamma
MIACWKPLATALLLGGAVTLASAQQPASTPAAAPVNPAVQPAQPFSNVVSENVFNLPRRDLAKEAQDQTARRVTQPGNSAPFWREVNSDQANYASLPGLETSVLIQRTGQKWRLFRNGVITVWGGWLVVLVPLAILGVFLLKGQIRLKEAPTGRKIERFTPTERYVHWTMAISFVTLGVSGIAMLWGKHFLLPLMGHQLFGWLTYVLKNLHNLVGPLFTVSIVVAFAMWARDNLPRRGDLQWLLRLGGMFGGHGAEVPSHRFNAGEKLWFWGGLVVLGLILSASGWVLDRIVPGVDYYRSTMQLAEIIHAIAAVGMICMSLGHIYIGTIGMEGAYRAMRDGYVDEAWAREHHVLWYDDIQAGKIPAQRSRPPDPPELPEPREQPAKG
>NC_017574.1|WP_042549223.1|1121084_1121333_+|hypothetical-protein
MHTIRMAMVMAMAAVGLAAALAGCGERPQTAVASHRKDDTPAYKGAEGDPFMAKNWTPGDRTSWESQIRARGQYQNEYNKTP
>NC_017574.1|WP_014616398.1|1120395_1121082_+|4Fe-4S-dicluster-domain-containing-protein
MARMKFICDSERCIECNACATACKNEHEVPWGVNRRRVVTINDGMVGAEKSISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSQGTFGVRGKMDKCTFCAGGPEPNGSEAEFEKYGRNRLAEGKLPLCAEMCSTKALLGGDGDVIADILRNRVMKRGKGAELFGWGTAYGGAGKSAQAAPAAPVAPAAPATPAVKPDAPASGAY
>NC_017574.1|WP_014616397.1|1117383_1120380_+|molybdopterin-dependent-oxidoreductase
MLLTRKPAAQDANTGQARRTGAATLSGSLARGLAGALPTMDRRTFLKRSGIGVGAGLAASQLSLVQKAAVGEARAAEGKDDIVVRRTVCSHCSVGCAVDAVVQNGVWVRQEPVFDSPINLGAHCAKGAALREHGHGEYRLKTPMKLVDGRYQRIGWEQALGEIVEKMKAIRQQTGPDSFFFVGSSKHSNEQAYLLRKWVSFFGTNNCDHQARICHSTTVAGVANTWGYGAMTNSYNDMQNARCALYIGSNAAEAHPVSMLHLLHAKETGCKVIVVDPRYTRTAAKSDEYVRIRSGTDIAFLFGVLYHVFQNGWEDKPFIHDRVYGMDKVRDEVLAKWTPDKVEEVCGVPEAQVRKVAEMMAMNRPSTLVWCMGQTQHTIGNAIVRASCIVQLALGNIGKSGGGANIFRGHDNVQGATDVGPNPDSLPGYYGLAAGAWKHYAAVWGVDYDWIKGRFASQAMMEKSGTTVSRWIDAVLEKNELIDQDNNVRAMFYWGHAPNSQTRGLEMKHALDKLDLLVVIDPYPSATAAMANMPAADGTPPNPNRAVYLLPAATQFETSGSCTASNRSLQWREKVIEPLFESQPDHVIMQALADRLGFGNELSKHLKITEYKRAGMTWREPGTESILREINRSNWTIGYTGQSPERLQAHMRNMHLFDVRTLRCKGGKDPVTGYDLTGDYFGLPWPCYGTPELKHPGSPNLYDTGKHVMDGGGNFRANFGVERDGINLLAEDGSYSLGAELTTGYPEFDHVFLKKLGWWDDLTEAEKKAAEGKNWKTDLSGGIQRVAMKHGCHPFGNAKARAVVWNFPDPIPQHREPLYSTRPDMVAKYPTHDDKKAFWRLPTLYKTVQQRNIENKVYEQFPIILTSGRLVEYEGGGEETRSNPWLAELQQENFVEINPKAAADRGIRNNDYVWVKTPTGARIKVRALVTERVGVDHAFIPFHFSGWWQGKDLLDYYPEGAHPIVRGEAVNTATTYGYDAVTMMQETKTTVCQIERFA
>NC_017574.1|WP_039547674.1|1117098_1117329_+|twin-arginine-translocation-signal-domain-containing-protein
MPDPKPPHAPVQADASEAAPTRRRFLMGAAVAVAAATAGRLVPPPAPDVTTEPADDKASGYRLTEHIRKYYKTTWI
>NC_017574.1|WP_014616405.1|1128725_1131458_+|CRISPR-associated-helicase/endonuclease-Cas3
MEKGAARYFAYWGKARMQEGASQLYHLLVFHALDVAACGAELLRLPRFSLAPLAAELGWPLRIVEKIFIWFLALHDLGKFARAFQNLAPGLSTDLVSPDQTKRYLRRHDTLGWLLWQERAACLGASLPDPVHGFWAAWVQTAVGHHGMPPQETAGGGLLPLQLHTFYLPEDMDAAVAFANAVAPFLLPSDIPVPGRAQRQTLLRHAWRLAGLAVLADWLGSNQEHFRYCVHPQDLSAYWCEVAQPAAARAVRLAGLSDQAVSPWQGSQALFPYLVSSTPLQRYAEIVPLAQGPQLFLLEDVTGAGKTEAAMMLAHRLMAAGHAHGIYFALPSMATANQIYRRTAAMYRRLYQAGTVPSLVLSHGARQLVDDFWRSVLEPQAHDDDFGYGREESSASAQCSAWLADNRKKALLADMGVGTVDQALLAVLPARHQALRLLGLSGKVLLVDEVHAYDPYMHTLLCRLLTAHARQGGSVLLLSATLPTGMRAELIAAFQVGCGREGAEPAADTRYPLATHVHAEVSTHACATRPQLVRKVAVAPFHAEQAAVERVIAEARAGRCICWIRNTVDDARHAFIALQAHLPEPSLALFHSRFAMGDRLAIEAAALDRFGKASTAAQRRGRVLIATQVVEQSLDLDFDIMISDLAPIDLLIQRAGRLQRHARHGDGEPATDGCERRPAPPLYLLCPENTDTPASDWYAALFPKARHVYPDVGKLWLTQRALLAAGHIVSPGGPGEDGAVRSLVEAVYGAEADSIPDALQPATQEREGKDMAAVSQAHFNALNLERGYCTDSSRHWYEDTQTPTRLGDETCEIYLAREEGGGLVPFVAASDFPWEHAAVRVRAGTVGTLSDCWQAKFGPAIDALRKRHRLLADPALVLPLAWEDGRWVGYCERNGKAQRIEYDDVLGLQV
>NC_017574.1|WP_042548987.1|1131495_1133064_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLTTPWLTVLRQDGSEDVIAANAMTSGSPPVDLLAVRPDFRGALYQFLIGLLQTAYAPVDQDEWRERWHQPPDLAALKAAFAPYLDAFELVGKGSAFMQDFDLPGAEQTEVAALLIDAPGGKTVRDNLDHFVHRGEVEALCPACAATALFTLQINAPAGGVGHRVSVRGGGPLTTLLLPADPAATLWQKLWLNVMPADALAYPPVKQRGGVLPWTVPTRTSDARGVGDTTPESVHAMQAYWSMPRRIRLDWSEADGACCDLCGAASDTLVRHYRTRNYGTNYTGAWLHPLTPYSLDPKGANPPLSIKGQRGGVGYRHWLGLVLGNDDHQPDAAQVVRHFQARVRVPGVRLWCFGYDMDNMKARCWYDATLPVHAVAPKQQLELAVAVKAWLDVAKEAADLLHKWVRAAWFERPGDAGPAPSVPQSFWQQSEPAFYTLLDQVATVDLSDEVALAPLHRDWLRVSHGLALRLFDDWVLAAPIEGMNVERVVTARSGLSKGLNTAKPMKQLWQIVKTYEKEAA
>NC_017574.1|WP_014616407.1|1133060_1133660_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSLHKHYLDDAQRKWVRSWWQALQPREGTSTVPGALALLGRGDRAGLKRCGGMAELLTEGATFQLAERLLSLESAKERARFADDYDAVVLVAGVLSHVSQDRANGKSVIAGLGRSGRDATPKLSEIRFRRLLQGRDLDDFYRQLVRVVQLAERTADVAQLADDALAWCRERSHATVTPSHGVRFRWARDYYLASAESAE
>NC_017574.1|WP_014616408.1|1133679_1134714_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTRFVQLHALVSYPPANLNRDDLGQPKTARMGGVQRLRVSSQSLKRAWRTSDLFQQQLAGSIGTRTKRLGHDVFDALKAAGVADKQATEWASQVAQVYGKVKKESPIEIEQLVHVAPEERRTLEALAAKLAADKRAPTEEELNALLHDHTAVDIAMFGRMLAAKTEHNEEAAVQVAHAIGVHASAIEDDYFTAVDDLNNDDSGAGHVGEAGFAAAVFYLYVCIDRDRLKQNLGGDDVLTQKALRALAQAVLTVGPNGKQNSFASRTYAHFAVAEKGSQQPRSLSLAFVKPVDGNDYAADAVTAFKRVQDNMDKVYGPCADTRCNLDVLAGEGSLPALLDFVAAE
>NC_017574.1|WP_014616409.1|1134718_1135492_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTEYLLFRLYGPLASWGEIAVGESRHSAMYPSKSALLGLLGAALGVRRDDDAGQQALARGYRFGVKLLTAGTPLRDYHTVQAPPQRRKTVYRTRRQELADTQALGTLLSAREYRCDSLALVAAEALPDAPHALDAVVEALRRPHFPLYLGRKSCPLALPLQPQLARAETLRAALDDARFPSPTALLSNHPERPWPTERDRHVFAFQPAAQRYYWEDGMHAGMEPALQLVRNDQPLSRRRWQFAPRREHAVLGTEAEA
>NC_017574.1|WP_014616410.1|1135488_1136157_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSHYFSRVRLQTRPRDMALLASLSRHGQAYRDHALIWRLFPGDGAERDFVFRRMQDDRGQTGYFVVSQRAPCAEPGLLDVQTKPYAPQLREGERIRFELRANPTVSRGTVGQRSRRHDVLMDARQHITDPHARQAAMDAAAIDWLIRRASDWGLTIAAECVLTSGYAQHRLRRKGQPIAFSSLDYQGVAQVADTGRLTQALLHGVGHARGFGCGLLLAARLP
>NC_017574.1|WP_014616411.1|1136161_1137079_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLPALKPLPMKDRVSMLFIQYGQIDVQDGAFVVIDQSGVRTHIPVGSVACIMLEPGTRVSHAAIRLAALVGTLLVWVGEAGVRLYASGQPGGARADRLLYQAKLALDDDLRLAVVRKMYEMRFNEPAPARRSVEQLRGIEGARVRETYKLLAHQYGVEWHARNYDRQEWDAADVPNRCLSAATSCLYGITEAAVLAAGYAPAVGFIHTGKPLSFVYDIADLFKFETVVPVAFKVAAKAPPQPEREVRLACRDIFRSTKLLGRIIPAIEEALSAGGISPPDAPPESVPPAIPNAESLGDAGHRVQG
>NC_017574.1|WP_014616412.1|1137075_1137375_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSFIVVVTEDVPPRLRGRLAIWLLEVRAGVYIGDVSRRTREMLWEQLVEGREDGNVVMAWASPHESGYEFQTLGANRRFPVEFDGLQLVAFQPADKPAL
>NC_017574.1|WP_014616413.1|1138573_1139989_-|argininosuccinate-lyase
MTSQLAKKAEAWSARFNEPVSDLVKRYTASVFFDKRLALFDIQGSLAHAAMLAKQGIIAEADRAAIERGMAQIRQEIESGVFEWKLDLEDVHLNIEARLTALTGDAGKRLHTGRSRNDQVATDIRLWLRSEIDSIVGLLKALRGALLDLAEQHAGTIVPGFTHLQVAQPVTFGHHLLAYVEMFTRDTERMLDARRRVNRLPLGAAALAGTSYPIDRDFVAQQLGFDGVCRNSLDAVSDRDFAIEFCAAAALVMTHISRFSEELVLWMSPRVGFIDIADRFCTGSSIMPQKKNPDVPELARGKTGRVNGHLIGLLTLMKGQPLAYNKDNQEDKEPLFDTVDTVADTLRIFADMVPGITVKADAMRAAALQGYATATDLADYLVKRGLPFRDAHEAVAHAVRACDDLRCDLADLSVAQLREISGLGDKADLISDDVHAVLTLEGSVASRNHIGGTAPEQVKLAIAAARAALAD
>NC_017574.1|WP_014616414.1|1140098_1140818_-|anti-sigma-factor
MDPRRHPDLIDRLAAEYAVGTLRAGARRRFEQLIRHDADVRATVERWQHYLADLPALQPASAPLPEILCRVEVQLGWRRPEPRRRPLRQRLWQGTGFWRVATAAAAIVATVAIGLNLRLARQLREAPVASAVAVLQDAQAQAAVLVTWDARTGALSLKRLDATPLTSQQALQLWALPPDGHPRSLGLIGHQRAMRLTLAQPLARVPALAVSVEPRGGSPDPNGPTGPVIFKGVLIDSAL

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Crispr_ID: NC_017574_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017574_2

1137444-1138449

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCTGCGGGGATGAACCG	PILER-CR
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CRT

16 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_017574_2

>merge|NC_017574|2|1137444-1138449|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCTGCGGGGATGAACCGCCGGCTCCCTTGCCGTAGGCGCCCCAGTTGGCGTGTTCCCCGCGCCTGCGGGGATGAACCGGCTTCCGTGTGCAGCACACTGATCAGGCCAGCGTGTTCCCCGCGCCTGCGGGGATGAACCGCATCGGTGAAAGAGCATTCTTGACGGGCTGAGGTGTTCCCCGCGCCTGCGGGGATGAACCGACTCATCGCCTCCCCAGGCTTCGCGTTGTGCAGTGTTCCCCGCGCCTGCGGGGATGAACCGTACGGCGTGGGCGTCTGGCAGCAGCAGAACGCGTGTTCCCCGCGCCTGCGGGGATGAACCGTTCTACCTACTGTTCGTCTTGCCGGTTGTCGTCGTGTTCCCCGCGCCTGCGGGGATGAACCGCTGGACGGGTTCATCCAATTTTTCCGGCAGCAGTGTTCCCCGCGCCTGCGGGGATGAACCGGTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGTGTGTTCCCCGCGCCTGCGGGGATGAACCGACACTGCGCCAGCACCGCCCCCCGATTCCACCGTGTTCCCCGCGCCTGCGGGGATGAACCGGACTTGAACACCGAGGCCTGGGCCCAGGTCAAGTGTTCCCCGCGCCTGCGGGGATGAACCGCCCTGCCTCAACATCTTCAGCGCTGTAGTACTGTGTTCCCCGCGCCTGCGGGGATGAACCGGCTGTGCTGCTCGCGGCCTAGCAACTCCGGTCGTGTTCCCCGCGCCTGCAGGGATGAACCGCGAGCGAGGTGGGCCTTGTTGACCTGGCCGAGGTGTTCCCCGCGTTTGCGAGGATGAATCGGTTCAGGAGTCGAGCGACTTCCTGTCCCGCATGTGTTCCCCGCGTCTGCGGGGATGAACCGATGAGCGGGTTACCCGTCGCGGCGGCTTTTATGTGTTCCCTGCGTACGCGGGGATGCACTGCCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCTGTGTTCCCCGCGCCTGCGGGGATGCTCCG

>NC_017574|2|2|1137444-1138144|PILER-CR
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CCGGCTCCCTTGCCGTAGGCGCCCCAGTTGGC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GCTTCCGTGTGCAGCACACTGATCAGGCCAGC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CATCGGTGAAAGAGCATTCTTGACGGGCTGAG
GTGTTCCCCGCGCCTGCGGGGATGAACCG	ACTCATCGCCTCCCCAGGCTTCGCGTTGTGCA
GTGTTCCCCGCGCCTGCGGGGATGAACCG	TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CTGGACGGGTTCATCCAATTTTTCCGGCAGCA
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT
GTGTTCCCCGCGCCTGCGGGGATGAACCG	ACACTGCGCCAGCACCGCCCCCCGATTCCACC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GACTTGAACACCGAGGCCTGGGCCCAGGTCAA
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CCCTGCCTCAACATCTTCAGCGCTGTAGTACT
GTGTTCCCCGCGCCTGCGGGGATGAACCG

>NC_017574|2|2|1137444-1138449|CRISPRCasFinder
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CCGGCTCCCTTGCCGTAGGCGCCCCAGTTGGC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GCTTCCGTGTGCAGCACACTGATCAGGCCAGC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CATCGGTGAAAGAGCATTCTTGACGGGCTGAG
GTGTTCCCCGCGCCTGCGGGGATGAACCG	ACTCATCGCCTCCCCAGGCTTCGCGTTGTGCA
GTGTTCCCCGCGCCTGCGGGGATGAACCG	TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CTGGACGGGTTCATCCAATTTTTCCGGCAGCA
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT
GTGTTCCCCGCGCCTGCGGGGATGAACCG	ACACTGCGCCAGCACCGCCCCCCGATTCCACC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GACTTGAACACCGAGGCCTGGGCCCAGGTCAA
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CCCTGCCTCAACATCTTCAGCGCTGTAGTACT
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC
GTGTTCCCCGCGCCTGCAGGGATGAACCG	CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG
GTGTTCCCCGCGTTTGCGAGGATGAATCG	GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT
GTGTTCCCCGCGTCTGCGGGGATGAACCG	ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT
GTGTTCCCTGCGTACGCGGGGATGCACTG	CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT
GTGTTCCCCGCGCCTGCGGGGATGCTCCG

>NC_017574|2|2|1137444-1138449|CRT
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CCGGCTCCCTTGCCGTAGGCGCCCCAGTTGGC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GCTTCCGTGTGCAGCACACTGATCAGGCCAGC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CATCGGTGAAAGAGCATTCTTGACGGGCTGAG
GTGTTCCCCGCGCCTGCGGGGATGAACCG	ACTCATCGCCTCCCCAGGCTTCGCGTTGTGCA
GTGTTCCCCGCGCCTGCGGGGATGAACCG	TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CTGGACGGGTTCATCCAATTTTTCCGGCAGCA
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT
GTGTTCCCCGCGCCTGCGGGGATGAACCG	ACACTGCGCCAGCACCGCCCCCCGATTCCACC
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GACTTGAACACCGAGGCCTGGGCCCAGGTCAA
GTGTTCCCCGCGCCTGCGGGGATGAACCG	CCCTGCCTCAACATCTTCAGCGCTGTAGTACT
GTGTTCCCCGCGCCTGCGGGGATGAACCG	GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC
GTGTTCCCCGCGCCTGCAGGGATGAACCG	CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG
GTGTTCCCCGCGTTTGCGAGGATGAATCG	GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT
GTGTTCCCCGCGTCTGCGGGGATGAACCG	ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT
GTGTTCCCTGCGTACGCGGGGATGCACTG	CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT
GTGTTCCCCGCGCCTGCGGGGATGCTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017574.1\|WP_042549174.1\|1144834_1147771_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NC_017574.1\|WP_014616410.1\|1135488_1136157_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|215025
NC_017574.1\|WP_014616409.1\|1134718_1135492_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_017574.1\|WP_014616405.1\|1128725_1131458_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_017574.1\|WP_039547691.1\|1142347_1143232_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_017574.1\|WP_014616411.1\|1136161_1137079_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_017574.1\|WP_014616415.1\|1140817_1141465_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|105710
NC_017574.1\|WP_042548987.1\|1131495_1133064_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_017574.1\|WP_014616414.1\|1140098_1140818_-\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|227648
NC_017574.1\|WP_014616419.1\|1147879_1148884_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_017574.1\|WP_014616412.1\|1137075_1137375_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_017574.1\|WP_014616404.1\|1125267_1127547_+\|arginine/lysine/ornithine-decarboxylase	unknown	unknown	gnl\|CDD\|224893
NC_017574.1\|WP_014616407.1\|1133060_1133660_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_017574.1\|WP_014616403.1\|1124619_1125186_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|234753
NC_017574.1\|WP_014616421.1\|1150988_1152182_+\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|225613
NC_017574.1\|WP_014616413.1\|1138573_1139989_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NC_017574.1\|WP_003272392.1\|1141659_1142277_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372666
NC_017574.1\|WP_042549175.1\|1143357_1144776_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_017574.1\|WP_014616408.1\|1133679_1134714_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_017574.1\|WP_014616420.1\|1148898_1150986_+\|fused-uroporphyrinogen-III-synthase-HemD/membrane-protein-HemX	unknown	unknown	gnl\|CDD\|235899

Protein	Function_ID	Function_description	E-value
NC_017574.1\|WP_042549174.1\|1144834_1147771_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NC_017574.1\|WP_014616410.1\|1135488_1136157_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.76887e-45
NC_017574.1\|WP_014616409.1\|1134718_1135492_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.03368e-40
NC_017574.1\|WP_014616405.1\|1128725_1131458_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.59792e-124
NC_017574.1\|WP_039547691.1\|1142347_1143232_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.52316e-39
NC_017574.1\|WP_014616411.1\|1136161_1137079_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	5.15782e-152
NC_017574.1\|WP_014616415.1\|1140817_1141465_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|105710	PRK12514, PRK12514, RNA polymerase sigma factor; Provisional.	2.52113e-42
NC_017574.1\|WP_042548987.1\|1131495_1133064_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	5.00759e-136
NC_017574.1\|WP_014616414.1\|1140098_1140818_-\|anti-sigma-factor	gnl\|CDD\|227648	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown].	9.28921e-85
NC_017574.1\|WP_014616419.1\|1147879_1148884_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	1.21199e-166
NC_017574.1\|WP_014616412.1\|1137075_1137375_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.19797e-60
NC_017574.1\|WP_014616404.1\|1125267_1127547_+\|arginine/lysine/ornithine-decarboxylase	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	0
NC_017574.1\|WP_014616407.1\|1133060_1133660_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.3476e-23
NC_017574.1\|WP_014616403.1\|1124619_1125186_+\|dCTP-deaminase	gnl\|CDD\|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	7.2762e-115
NC_017574.1\|WP_014616421.1\|1150988_1152182_+\|heme-biosynthesis-protein-HemY	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	2.16793e-132
NC_017574.1\|WP_014616413.1\|1138573_1139989_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NC_017574.1\|WP_003272392.1\|1141659_1142277_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|372666	pfam13668, Ferritin_2, Ferritin-like domain. This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	4.04113e-35
NC_017574.1\|WP_042549175.1\|1143357_1144776_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.19777e-63
NC_017574.1\|WP_014616408.1\|1133679_1134714_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.3418e-107
NC_017574.1\|WP_014616420.1\|1148898_1150986_+\|fused-uroporphyrinogen-III-synthase-HemD/membrane-protein-HemX	gnl\|CDD\|235899	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed.	0

>NC_017574.1|WP_014616412.1|1137075_1137375_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSFIVVVTEDVPPRLRGRLAIWLLEVRAGVYIGDVSRRTREMLWEQLVEGREDGNVVMAWASPHESGYEFQTLGANRRFPVEFDGLQLVAFQPADKPAL
>NC_017574.1|WP_014616411.1|1136161_1137079_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLPALKPLPMKDRVSMLFIQYGQIDVQDGAFVVIDQSGVRTHIPVGSVACIMLEPGTRVSHAAIRLAALVGTLLVWVGEAGVRLYASGQPGGARADRLLYQAKLALDDDLRLAVVRKMYEMRFNEPAPARRSVEQLRGIEGARVRETYKLLAHQYGVEWHARNYDRQEWDAADVPNRCLSAATSCLYGITEAAVLAAGYAPAVGFIHTGKPLSFVYDIADLFKFETVVPVAFKVAAKAPPQPEREVRLACRDIFRSTKLLGRIIPAIEEALSAGGISPPDAPPESVPPAIPNAESLGDAGHRVQG
>NC_017574.1|WP_014616410.1|1135488_1136157_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSHYFSRVRLQTRPRDMALLASLSRHGQAYRDHALIWRLFPGDGAERDFVFRRMQDDRGQTGYFVVSQRAPCAEPGLLDVQTKPYAPQLREGERIRFELRANPTVSRGTVGQRSRRHDVLMDARQHITDPHARQAAMDAAAIDWLIRRASDWGLTIAAECVLTSGYAQHRLRRKGQPIAFSSLDYQGVAQVADTGRLTQALLHGVGHARGFGCGLLLAARLP
>NC_017574.1|WP_014616409.1|1134718_1135492_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTEYLLFRLYGPLASWGEIAVGESRHSAMYPSKSALLGLLGAALGVRRDDDAGQQALARGYRFGVKLLTAGTPLRDYHTVQAPPQRRKTVYRTRRQELADTQALGTLLSAREYRCDSLALVAAEALPDAPHALDAVVEALRRPHFPLYLGRKSCPLALPLQPQLARAETLRAALDDARFPSPTALLSNHPERPWPTERDRHVFAFQPAAQRYYWEDGMHAGMEPALQLVRNDQPLSRRRWQFAPRREHAVLGTEAEA
>NC_017574.1|WP_014616408.1|1133679_1134714_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTRFVQLHALVSYPPANLNRDDLGQPKTARMGGVQRLRVSSQSLKRAWRTSDLFQQQLAGSIGTRTKRLGHDVFDALKAAGVADKQATEWASQVAQVYGKVKKESPIEIEQLVHVAPEERRTLEALAAKLAADKRAPTEEELNALLHDHTAVDIAMFGRMLAAKTEHNEEAAVQVAHAIGVHASAIEDDYFTAVDDLNNDDSGAGHVGEAGFAAAVFYLYVCIDRDRLKQNLGGDDVLTQKALRALAQAVLTVGPNGKQNSFASRTYAHFAVAEKGSQQPRSLSLAFVKPVDGNDYAADAVTAFKRVQDNMDKVYGPCADTRCNLDVLAGEGSLPALLDFVAAE
>NC_017574.1|WP_014616407.1|1133060_1133660_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSLHKHYLDDAQRKWVRSWWQALQPREGTSTVPGALALLGRGDRAGLKRCGGMAELLTEGATFQLAERLLSLESAKERARFADDYDAVVLVAGVLSHVSQDRANGKSVIAGLGRSGRDATPKLSEIRFRRLLQGRDLDDFYRQLVRVVQLAERTADVAQLADDALAWCRERSHATVTPSHGVRFRWARDYYLASAESAE
>NC_017574.1|WP_042548987.1|1131495_1133064_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLTTPWLTVLRQDGSEDVIAANAMTSGSPPVDLLAVRPDFRGALYQFLIGLLQTAYAPVDQDEWRERWHQPPDLAALKAAFAPYLDAFELVGKGSAFMQDFDLPGAEQTEVAALLIDAPGGKTVRDNLDHFVHRGEVEALCPACAATALFTLQINAPAGGVGHRVSVRGGGPLTTLLLPADPAATLWQKLWLNVMPADALAYPPVKQRGGVLPWTVPTRTSDARGVGDTTPESVHAMQAYWSMPRRIRLDWSEADGACCDLCGAASDTLVRHYRTRNYGTNYTGAWLHPLTPYSLDPKGANPPLSIKGQRGGVGYRHWLGLVLGNDDHQPDAAQVVRHFQARVRVPGVRLWCFGYDMDNMKARCWYDATLPVHAVAPKQQLELAVAVKAWLDVAKEAADLLHKWVRAAWFERPGDAGPAPSVPQSFWQQSEPAFYTLLDQVATVDLSDEVALAPLHRDWLRVSHGLALRLFDDWVLAAPIEGMNVERVVTARSGLSKGLNTAKPMKQLWQIVKTYEKEAA
>NC_017574.1|WP_014616405.1|1128725_1131458_+|CRISPR-associated-helicase/endonuclease-Cas3
MEKGAARYFAYWGKARMQEGASQLYHLLVFHALDVAACGAELLRLPRFSLAPLAAELGWPLRIVEKIFIWFLALHDLGKFARAFQNLAPGLSTDLVSPDQTKRYLRRHDTLGWLLWQERAACLGASLPDPVHGFWAAWVQTAVGHHGMPPQETAGGGLLPLQLHTFYLPEDMDAAVAFANAVAPFLLPSDIPVPGRAQRQTLLRHAWRLAGLAVLADWLGSNQEHFRYCVHPQDLSAYWCEVAQPAAARAVRLAGLSDQAVSPWQGSQALFPYLVSSTPLQRYAEIVPLAQGPQLFLLEDVTGAGKTEAAMMLAHRLMAAGHAHGIYFALPSMATANQIYRRTAAMYRRLYQAGTVPSLVLSHGARQLVDDFWRSVLEPQAHDDDFGYGREESSASAQCSAWLADNRKKALLADMGVGTVDQALLAVLPARHQALRLLGLSGKVLLVDEVHAYDPYMHTLLCRLLTAHARQGGSVLLLSATLPTGMRAELIAAFQVGCGREGAEPAADTRYPLATHVHAEVSTHACATRPQLVRKVAVAPFHAEQAAVERVIAEARAGRCICWIRNTVDDARHAFIALQAHLPEPSLALFHSRFAMGDRLAIEAAALDRFGKASTAAQRRGRVLIATQVVEQSLDLDFDIMISDLAPIDLLIQRAGRLQRHARHGDGEPATDGCERRPAPPLYLLCPENTDTPASDWYAALFPKARHVYPDVGKLWLTQRALLAAGHIVSPGGPGEDGAVRSLVEAVYGAEADSIPDALQPATQEREGKDMAAVSQAHFNALNLERGYCTDSSRHWYEDTQTPTRLGDETCEIYLAREEGGGLVPFVAASDFPWEHAAVRVRAGTVGTLSDCWQAKFGPAIDALRKRHRLLADPALVLPLAWEDGRWVGYCERNGKAQRIEYDDVLGLQV
>NC_017574.1|WP_014616404.1|1125267_1127547_+|arginine/lysine/ornithine-decarboxylase
MKFRFPVIIIDEDFRSENISGSGIRALAQAIEEEGMEVTGLTSYGDLTSFAQQSSRASTFIVSIDDDEFINPDNDKPEPEAVENLRAFVAEVRRRNADIPIFLYGETRTSRHLPNDVLRELHGFIHMFEDTPEFVARHIIREARNYLDSLPPPFFKALIDYAQDSSYSWHCPGHSGGVAFLKSPVGQVFHQFFGENMLRADVCNAVDELGQLLDHTGPVAASERNAARIFGSDHMFFVTNGTSTSNKMVWHANVAPGDIVVVDRNCHKSILHAIMMTGAIPVFLMPTRNHYGIIGPIPQSEFEPETIARKIAEHPFASQAKNKKPRILTITQGTYDGVLYNAERIKHMLSTEIDTLHFDEAWLPHAAFHPFYRDMHAIGQGRSRSKDALVFATQSTHKLLAGLSQASQILVQDSETRKLDTYRFNEAYLMHTSTSPQYSIIASCDVAAAMMEAPGGTALVEESIAEALDFRRAMRKVEQEYVGTNGGNGRGDDWWFKVWGPNDLSDEGIEEREAWMLKANERWHGFGDLAEDFNLLDPIKATIITPGLDVDGKFSESGIPAAIVTKYLAEHGIIVEKTGLYSFFIMFTIGITKGRWNSLVTELQQFKDDYDNNQPLWRVLPEFVRQYPQYERIGLRELCDGIHSVYKANDVARVTTEMYLSNMEPAMKPSDAWAKMAHRETERVAIDDLEGRITAILLTPYPPGIPLLIPGERFNRTIVQYLQFARDFNKLFPGFETDIHGLVEEEIDDKVGYFVDCVR
>NC_017574.1|WP_014616403.1|1124619_1125186_+|dCTP-deaminase
MSIKSDKWIRRMAEQHGMIEPFEPGQVRESEGRRIVSYGTSSYGYDIRCANEFKIFTNINSTIVDPKNFDEKSFVDFKGDVCIIPPNSFALARTMEYFRIPRTVLTVCLGKSTYARCGIIVNVTPFEPEWEGYVTLEFSNTTPLPAKIYAGEGCAQVLFFESDEPCETSYKDRGGKYQGQQGVTLPKT
>NC_017574.1|WP_014616413.1|1138573_1139989_-|argininosuccinate-lyase
MTSQLAKKAEAWSARFNEPVSDLVKRYTASVFFDKRLALFDIQGSLAHAAMLAKQGIIAEADRAAIERGMAQIRQEIESGVFEWKLDLEDVHLNIEARLTALTGDAGKRLHTGRSRNDQVATDIRLWLRSEIDSIVGLLKALRGALLDLAEQHAGTIVPGFTHLQVAQPVTFGHHLLAYVEMFTRDTERMLDARRRVNRLPLGAAALAGTSYPIDRDFVAQQLGFDGVCRNSLDAVSDRDFAIEFCAAAALVMTHISRFSEELVLWMSPRVGFIDIADRFCTGSSIMPQKKNPDVPELARGKTGRVNGHLIGLLTLMKGQPLAYNKDNQEDKEPLFDTVDTVADTLRIFADMVPGITVKADAMRAAALQGYATATDLADYLVKRGLPFRDAHEAVAHAVRACDDLRCDLADLSVAQLREISGLGDKADLISDDVHAVLTLEGSVASRNHIGGTAPEQVKLAIAAARAALAD
>NC_017574.1|WP_014616414.1|1140098_1140818_-|anti-sigma-factor
MDPRRHPDLIDRLAAEYAVGTLRAGARRRFEQLIRHDADVRATVERWQHYLADLPALQPASAPLPEILCRVEVQLGWRRPEPRRRPLRQRLWQGTGFWRVATAAAAIVATVAIGLNLRLARQLREAPVASAVAVLQDAQAQAAVLVTWDARTGALSLKRLDATPLTSQQALQLWALPPDGHPRSLGLIGHQRAMRLTLAQPLARVPALAVSVEPRGGSPDPNGPTGPVIFKGVLIDSAL
>NC_017574.1|WP_014616415.1|1140817_1141465_-|sigma-70-family-RNA-polymerase-sigma-factor
MLTFERAAANHTAGQDAGQSPAAAGHARGADAEALAALLQRIGLGDRDALRTLYACCAPKLFGLALRILARKDWAEDVLQESFVNIWRHAGDYRPHLAAPMTWMTTIVRNRALDCLRRQRAERVQASVPLDETDAAALVDHAPGPADLALAGQQARALAECLKRLDPKQREVVSLAYLRDLSHSELAQTLSVPLGTVKSWMRRGLDRLRECLGAP
>NC_017574.1|WP_003272392.1|1141659_1142277_+|ferritin-like-domain-containing-protein
MDTTKDVERFDARFDADTPRIDVRRRVLLRAPGLMALGSLAAVSLGQSMPAWAQAQSGSVKDDINILNVALGLEYQAIAAYQVGAESGLLQKPVLDTAVKFQGHHKAHAQVLAGTVSKMGGTPVMAKKTAEYNFPVSQLKTQADVLRFAAGLEKGATSAYLGVMPNFYTRDLTKAAASILGDEAMHWAILLSVLGEDPVPVAFVG
>NC_017574.1|WP_039547691.1|1142347_1143232_-|LysR-family-transcriptional-regulator
MNWDNARIFLAVARTCTLRGAAQRLGVDQATVGRRIAALEAELSAKLFLRTSTTLALTPAGEALIGPAEAMEHAAHTIERRVAGTDEQLAGTIRVATTDTLAAAFVLPAIAQLRLRHPGIDIVCLASKSIANLTKREADVAVRTLRPTAPDLIARRVATIETGLYASRGYLRTRGEPVEGSAFAGHDLVLYPRNEVPWMWEALCGEPVAPSRVVLQSSSVMTIFEAVIAGIGISELVCCRADPHPELVRVLPHRRRMQDVWLVTHADLHKTARVRALMDCIVDAFDPHRKAATP
>NC_017574.1|WP_042549175.1|1143357_1144776_+|MFS-transporter
MPSCEAPAVNAAAIVPGLDPSRWRRNATLGILTSGVFMAVLDTTVVNVALNAMRASLHSSVAELAWIVDAYSLAFAAFILTGGLLTDRIGARTVFLAGMAVFIAASAACGLAPSVVALIAARIVQGVGAAMFLPSSLSLVRATFEDPRERAWAIGLWGGIVACAAAVGPALGGWLVDAYGWRSAFLINVPLGIAGMVGTWVIVRHTQPARARPFDWAGQATSVVMLAALCFAAIEWPVRGAQSPWVWGAALLTAVAVALFVIAERRARAPLVPLAWFAHRTLGAVNGVGFLLNFGYFGALFVLSLHLQNVEHFSARQTGLVLLPLAVSLSAGNLFAGKLMARFPMPDMMVGGLLTGGAGLLATSMALGAHVPIWLACAATVAFGGGTALAIAPMTSSILAAVPGELAGTASGLLNAARQTGSLLGVAVAGAIITVVPDVARALPAAFAVMAVSYAGAVAMAWLSRRPATAPA
>NC_017574.1|WP_042549174.1|1144834_1147771_-|phosphoenolpyruvate-carboxylase
MTQPAARRASARATPASQAAEALAAHGAAGTTLGPTSRRSSGSAAAKDQPLKEDIRFLGRLLGDVLREQEGAAAFETVETIRQTAVRFRRDGDRQAEQELDRLLKTLSRDQTTSVVRAFSYFSHLANIAEDQHHNRRRRVHALAGSPPQPGSLLRALLSAADEGLSGEALRRFFDAALIVPVLTAHPTEVQRKSILDAQREIARLLAERDAPLTARERERNTALLRAHVTKLWQTRMLRTTRLMVADEIENALSYYQTTFLREIPALYRELEEDVATVFPRRGARGEPATLPAFFQMGSWIGGDRDGNPFVTAQTLRHAARRQASVILTWYLDEIHALGAELSMSTSLVDVSAELLALAERSPDHSEHRADEPYRRALIGVYARLAATCRELTGEDAGRHAVGPAPAYASPEDLRADIRIVIDSLAAHHGEALADARLTSLARAIDVFGFHLASIDLRQVSDVHEATVAELLKVAGVEGAYAALSETDKRTLLLRELQQPRLLTLPFHTYGETTASELEIFRAAREVRARYGSRIVRNYIISHTETLSDLLEVMLLQKESGMFRHGTNGSGGAGLDVMVIPLFETIEDLRNAPQIMGDLLALPGFDAVLAAQGNEQEVMLGYSDSNKDGGFLTSNWELYKAELALVDLFERHGVRLRLFHGRGGTVGRGGGPTYQAILSQPPGTVNGQIRLTEQGEIISSKFANPEIGRRNLETIVAATLEATLLPTRNRPKGLEEFEAAMQALSDHAFSAYRNLVYETPGFKDYFFATTPITEIADLNLGSRPASRKLMDKKQRRIEDLRAIPWGFSWGQCRLLLPGWFGFGSAVQRWLDEAGSAKAKAARLATLKRMHKQWPFFANLLSNMDMVLSKADLNVASRYAQLCDDRKLRNAVFSRISAEFTLTGQMLAAITGQSERLADNPLLARSIKNRFPYLDPLNHLQVELLKRFRSGKAGSDDARVRRGIHLSINGIAAGLRNSG
>NC_017574.1|WP_014616419.1|1147879_1148884_+|hydroxymethylbilane-synthase
MSSNARPTSVESPLAAQAPTRLVIASRESRLAMWQAEYVRAALQKYYPACDVSILGMTTRGDQILDRSLAKVGGKGLFVKELEVALAEGRADLAVHSLKDVPMELPPGFALPAILEREDPRDAFVSNQYADLAALPAGAVVGTSSLRREASLRARFPHLVIQPLRGNLDTRLAKLDRGDYAAIILAAAGLKRLGLSERIRAVIASDVSLPAAGQGALGIETRADRTDVQAWLAPLHHLPTALAVTAERAVSRRLGGSCQVPLAAFAHWTDAGALRLRAFVASQDGRRKLAAEGEATPTTLAEADALGARVAQQMLDGGARDILATLGADAPPAT
>NC_017574.1|WP_014616420.1|1148898_1150986_+|fused-uroporphyrinogen-III-synthase-HemD/membrane-protein-HemX
MDDRSPSPSSVPPDALPHPSAPVVVVTRPRAQAPMLVAALERHGLRTFQFPLLDIAPTPNLDDLRAALADPSRYALVVFVSPNAVQQAFSAMPEGFRWPQDVPVAVVGPASAQALAAHGVEPPTHSVIRPDTHADDARQDSEALYARLDPAQLSGREVLLVRGNGGREWLADRLREAGVAVRAVEAYRRSVPVPDAAAWAALREVLAGRHAWTLTSSEAVRNLDSLAHASLTAAEVDTLHAAPCFAPHARIVEQAQSLGFRDVTLTDAGDDRLLAGLLAWAGPVAPVAEAVPSPAPAAAPAEPKPSSPAPIVSQTSAPSSVPAPGPAAASPGPAAAPAAPTTTVSARPGRGNWLLWAALIVVLVVVAGLQVRNERLAREVRQRAQQNETLAQEMRVLSRNDQDAFAQLQQKFGALDARTAETRDRQGALEQASQDLLRNRDDWQRAEIERSLEVASEQLQLTGNVSSALVALQTIDARLASLDKPQFRAMRRAVARDIAKLKALPAIDLSGAAIRLDDAINGIDALPLVSSALPLESQQAAQAPHGRSAKPAKAVAPASAPAAPVAAQTGWSAGVRAWWGRLWHDVRHELGQIVQVRRVDQAEALLLSSDQAWFLRENLKLWLMNARLALLSRNEAVFRADLGRADALLARYFDPQSPRVVAEQTLLQQARASVGTLEVPTLADSLAAARGQGKE
>NC_017574.1|WP_014616421.1|1150988_1152182_+|heme-biosynthesis-protein-HemY
MRWVFWVALLFAAAVGLALFTELNLSNVVLLYPPYRVDVSLNFVLAALVLVFVAMHLLLRLFHHVTGMPARAAAYRERTRILRASAALRDAMESLFAGRFGRAERLAREAQAWGVQRETAALIGARAAHRMQETDRRDAWMAEVTSPDREQAKLVSMAELLVDARDADGALEKIAQLQSQGARQIQAQRIALRAHQHLKNWNEVLRLTRALEKRNAIHAVLAARLKQMACETLLQERRHDTDALNDFWRELTAEERRSPRIASLAALYFAQLGRTDEAKRIVEDALRAHWDGRLIRRYADCAVPGKALPLIQQAEKWLGQHPVDADLFYTLGMLCFKEQLWGKAQSSLESALKYADADHHGNLRAHAHLALAQLYEQTDRPEESQRHFRQSALLAVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017574_2	2.13\|1138206\|32\|NC_017574\|CRISPRCasFinder,CRT	1138206-1138237	32	NZ_CP012941	Ralstonia solanacearum strain UW163 plasmid pUW163a, complete sequence	51375-51406	0	1.0
NC_017574_1	1.9\|1128154\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128154-1128185	32	NC_012851	Ralstonia pickettii 12D plasmid pRp12D03, complete sequence	12975-13006	1	0.969
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	AB981169	Ralstonia phage RSY1 DNA, complete genome	11675-11706	2	0.938
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	NC_049432	Ralstonia phage RsoM1USA, complete genome	6952-6983	2	0.938
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	AB276040	Ralstonia phage RSA1 DNA, complete genome	6947-6978	4	0.875
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	NC_009382	Ralstonia phage phiRSA1, complete genome	6947-6978	4	0.875
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_LR134455	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence	17504-17535	5	0.844
NC_017574_1	1.3\|1127787\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127787-1127818	32	NZ_CP021029	Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence	5845-5876	6	0.812
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP038638	Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence	17432-17463	6	0.812
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	415186-415217	6	0.812
NC_017574_1	1.3\|1127787\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127787-1127818	32	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	1443778-1443809	7	0.781
NC_017574_1	1.3\|1127787\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127787-1127818	32	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	1443756-1443787	7	0.781
NC_017574_1	1.3\|1127787\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127787-1127818	32	CP000621	Burkholderia vietnamiensis G4 plasmid pBVIE05, complete sequence	366-397	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	421912-421943	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	334593-334624	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1782046-1782077	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	290167-290198	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	310579-310610	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	341069-341100	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	1647349-1647380	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	293309-293340	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	627944-627975	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	354653-354684	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	446733-446764	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	2021148-2021179	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1682704-1682735	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1699408-1699439	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	122545-122576	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	295435-295466	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	905392-905423	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	1284511-1284542	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	19003-19034	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	294568-294599	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	97157-97188	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	303682-303713	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	291341-291372	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	184263-184294	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	290424-290455	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	307380-307411	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	319626-319657	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	788370-788401	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	287623-287654	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	291583-291614	7	0.781
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	294585-294616	7	0.781
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2402243-2402274	7	0.781
NC_017574_1	1.14\|1128459\|30\|NC_017574\|CRISPRCasFinder	1128459-1128488	30	KT367887	Klebsiella phage vB_Kp3, complete genome	39066-39095	7	0.767
NC_017574_1	1.14\|1128459\|30\|NC_017574\|CRISPRCasFinder	1128459-1128488	30	NC_048807	Erwinia phage pEp_SNUABM_01, complete genome	55584-55613	7	0.767
NC_017574_2	2.5\|1137717\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137717-1137748	32	NZ_CP027299	Streptomyces sp. SGAir0924 plasmid unnamed_5	170401-170432	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	MT723937	Gordonia phage JKSyngboy, complete genome	51853-51884	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	461040-461071	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	616283-616314	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	473763-473794	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	249208-249239	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	616292-616323	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	586686-586717	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	586670-586701	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	638479-638510	7	0.781
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	469554-469585	7	0.781
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MK864266	Gordonia phage Arri, complete genome	38580-38611	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MH479910	Gordonia phage Danyall, complete genome	38400-38431	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MT639651	Gordonia phage Portcullis, complete genome	38211-38242	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MH479917	Gordonia phage KimmyK, complete genome	39133-39164	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MK814761	Gordonia phage SmokingBunny, complete genome	38510-38541	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	KX557286	Gordonia phage Twister6, complete genome	38311-38342	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MK967381	Gordonia phage RogerDodger, complete genome	38748-38779	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MT310872	Gordonia phage Evamon, complete genome	38419-38450	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MK864265	Gordonia phage Barb, complete genome	38699-38730	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MN010760	Gordonia phage Nubi, complete genome	38524-38555	8	0.75
NC_017574_1	1.3\|1127787\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127787-1127818	32	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	129007-129038	8	0.75
NC_017574_1	1.3\|1127787\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127787-1127818	32	NZ_CP028969	Aminobacter sp. MSH1 plasmid pUSP1, complete sequence	136797-136828	8	0.75
NC_017574_1	1.3\|1127787\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127787-1127818	32	NZ_CP026266	Aminobacter sp. MSH1 plasmid pAM01, complete sequence	134091-134122	8	0.75
NC_017574_1	1.3\|1127787\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127787-1127818	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1260508-1260539	8	0.75
NC_017574_1	1.11\|1128276\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128276-1128307	32	NZ_CP022991	Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence	312447-312478	8	0.75
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP015097	Pelagibaca abyssi strain JLT2014 plasmid pPABY7, complete sequence	18334-18365	8	0.75
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	517870-517901	8	0.75
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1551693-1551724	8	0.75
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP045481	Amycolatopsis sp. YIM 10 plasmid pAmyYIM10, complete sequence	28401-28432	8	0.75
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1462161-1462192	8	0.75
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1462152-1462183	8	0.75
NC_017574_1	1.14\|1128459\|30\|NC_017574\|CRISPRCasFinder	1128459-1128488	30	NC_011885	Cyanothece sp. PCC 7425 plasmid pP742502, complete sequence	8276-8305	8	0.733
NC_017574_2	2.1\|1137473\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137473-1137504	32	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	243260-243291	8	0.75
NC_017574_2	2.1\|1137473\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137473-1137504	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	189915-189946	8	0.75
NC_017574_2	2.2\|1137534\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137534-1137565	32	MN586049	Gordonia phage Yarn, complete genome	37589-37620	8	0.75
NC_017574_2	2.2\|1137534\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137534-1137565	32	MN586036	Gordonia phage AndPeggy, complete genome	37584-37615	8	0.75
NC_017574_2	2.2\|1137534\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137534-1137565	32	MN234215	Gordonia phage SteamedHams, complete genome	37561-37592	8	0.75
NC_017574_2	2.5\|1137717\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137717-1137748	32	NC_014120	Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence	143591-143622	8	0.75
NC_017574_2	2.5\|1137717\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137717-1137748	32	NZ_AP017899	Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence	23684-23715	8	0.75
NC_017574_2	2.5\|1137717\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137717-1137748	32	NC_015169	Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence	112950-112981	8	0.75
NC_017574_2	2.7\|1137840\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137840-1137871	32	AP014107	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S24-C120, * SEQUENCING IN PROGRESS *	2758-2789	8	0.75
NC_017574_2	2.9\|1137962\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137962-1137993	32	NZ_CP014598	Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence	51311-51342	8	0.75
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	NC_003278	Pseudomonas phage phiCTX, complete genome	5368-5399	8	0.75
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	KM389403	UNVERIFIED: Pseudomonas phage F_HA1961sp/Pa1641 clone contig00003 genomic sequence	2145-2176	8	0.75
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	Y13918	Pseudomonas aeruginosa phage phi CTX DNA, complete genome	5368-5399	8	0.75
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	AB008550	Pseudomonas phage phiCTX DNA, complete genome	5368-5399	8	0.75
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	MK034952	Pseudomonas phage Dobby, complete genome	6725-6756	8	0.75
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	CP054917	Streptomyces sp. NA02950 plasmid unnamed, complete sequence	10907-10938	8	0.75
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	NZ_CP022191	Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence	390312-390343	8	0.75
NC_017574_2	2.16\|1138389\|32\|NC_017574\|CRISPRCasFinder,CRT	1138389-1138420	32	MN369758	Gordonia phage NHagos, complete genome	42051-42082	8	0.75
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MK864264	Gordonia phage VanDeWege, complete genome	38645-38676	9	0.719
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MK864267	Gordonia phage Valary, complete genome	39353-39384	9	0.719
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MT521998	Gordonia phage Jambalaya, complete genome	38198-38229	9	0.719
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	NC_030913	Gordonia phage Wizard, complete genome	38551-38582	9	0.719
NC_017574_1	1.2\|1127726\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127726-1127757	32	MK305889	Gordonia phage Mutzi, complete genome	39527-39558	9	0.719
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	242187-242218	9	0.719
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1220681-1220712	9	0.719
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_LR134447	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence	65371-65402	9	0.719
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	119746-119777	9	0.719
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	29800-29831	9	0.719
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	228883-228914	9	0.719
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	822450-822481	9	0.719
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	479667-479698	9	0.719
NC_017574_2	2.2\|1137534\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137534-1137565	32	NC_015720	Gordonia phage GTE2, complete genome	37699-37730	9	0.719
NC_017574_2	2.2\|1137534\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137534-1137565	32	KU963260	Gordonia phage Emalyn, complete genome	37096-37127	9	0.719
NC_017574_2	2.2\|1137534\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137534-1137565	32	HQ403646	Gordonia phage GTE2, complete sequence	37699-37730	9	0.719
NC_017574_2	2.4\|1137656\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137656-1137687	32	MF768471	Pseudomonas sp. Lz4W plasmid pLz4W, complete sequence	2065-2096	9	0.719
NC_017574_2	2.4\|1137656\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137656-1137687	32	NZ_CP021135	Pseudomonas fragi strain NMC25 plasmid unnamed3, complete sequence	2391-2422	9	0.719
NC_017574_2	2.4\|1137656\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137656-1137687	32	NZ_CP021135	Pseudomonas fragi strain NMC25 plasmid unnamed3, complete sequence	13565-13596	9	0.719
NC_017574_2	2.5\|1137717\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137717-1137748	32	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	329009-329040	9	0.719
NC_017574_2	2.5\|1137717\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137717-1137748	32	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	424067-424098	9	0.719
NC_017574_2	2.9\|1137962\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137962-1137993	32	MN543579	Klebsiella pneumoniae strain PM48 plasmid pPM48_140, complete sequence	45129-45160	9	0.719
NC_017574_2	2.9\|1137962\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137962-1137993	32	MN543581	Klebsiella pneumoniae strain PM48TC plasmid pPM48TC_fusion, complete sequence	45129-45160	9	0.719
NC_017574_2	2.9\|1137962\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137962-1137993	32	LR134207	Klebsiella aerogenes strain NCTC9667 genome assembly, plasmid: 2	155273-155304	9	0.719
NC_017574_2	2.9\|1137962\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137962-1137993	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	63276-63307	9	0.719
NC_017574_2	2.9\|1137962\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137962-1137993	32	NZ_CP030128	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence	291911-291942	9	0.719
NC_017574_2	2.11\|1138084\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1138084-1138115	32	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	297526-297557	9	0.719
NC_017574_2	2.14\|1138267\|32\|NC_017574\|CRISPRCasFinder,CRT	1138267-1138298	32	NZ_CP023740	Methylosinus trichosporium OB3b plasmid pOB3b3, complete sequence	42845-42876	9	0.719
NC_017574_1	1.9\|1128154\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1128154-1128185	32	MH590592	Mycobacterium phage Ryadel, complete genome	23669-23700	10	0.688
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP030220	Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence	139805-139836	10	0.688
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP033743	Citrobacter freundii strain FDAARGOS_549 plasmid unnamed, complete sequence	40308-40339	10	0.688
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP016453	Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence	202487-202518	10	0.688
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP022492	Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence	14489-14520	10	0.688
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP022492	Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence	128648-128679	10	0.688
NC_017574_2	2.2\|1137534\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137534-1137565	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	341180-341211	10	0.688
NC_017574_2	2.2\|1137534\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137534-1137565	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	720704-720735	10	0.688
NC_017574_2	2.3\|1137595\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137595-1137626	32	MN582107	Podoviridae sp. ctDWo9, complete genome	11326-11357	10	0.688
NC_017574_2	2.5\|1137717\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1137717-1137748	32	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	43392-43423	10	0.688
NC_017574_2	2.10\|1138023\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1138023-1138054	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1020866-1020897	10	0.688
NC_017574_2	2.10\|1138023\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1138023-1138054	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	792260-792291	10	0.688
NC_017574_2	2.13\|1138206\|32\|NC_017574\|CRISPRCasFinder,CRT	1138206-1138237	32	NZ_CP029209	Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence	658300-658331	10	0.688
NC_017574_2	2.15\|1138328\|32\|NC_017574\|CRISPRCasFinder,CRT	1138328-1138359	32	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	2002978-2003009	10	0.688
NC_017574_1	1.1\|1127665\|32\|NC_017574\|PILER-CR,CRISPRCasFinder,CRT	1127665-1127696	32	MT889373	Arthrobacter phage Brynnie, complete genome	34587-34618	11	0.656
NC_017574_1	1.13\|1128398\|32\|NC_017574\|CRISPRCasFinder,CRT	1128398-1128429	32	NZ_CP050138	Sphingomonas sp. CL5.1 plasmid pTSSC1, complete sequence	43555-43586	11	0.656

1. spacer 2.13|1138206|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP012941 (Ralstonia solanacearum strain UW163 plasmid pUW163a, complete sequence) position: , mismatch: 0, identity: 1.0

cgagcgaggtgggccttgttgacctggccgag	CRISPR spacer
cgagcgaggtgggccttgttgacctggccgag	Protospacer
********************************

2. spacer 1.9|1128154|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_012851 (Ralstonia pickettii 12D plasmid pRp12D03, complete sequence) position: , mismatch: 1, identity: 0.969

gcttcatattcatcggcggggtgcatgtcttc	CRISPR spacer
gcttcatattcgtcggcggggtgcatgtcttc	Protospacer
***********.********************

3. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to AB981169 (Ralstonia phage RSY1 DNA, complete genome) position: , mismatch: 2, identity: 0.938

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
gttcaggagtcgagcgatttcctgacccgcat	Protospacer
*****************.****** *******

4. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to NC_049432 (Ralstonia phage RsoM1USA, complete genome) position: , mismatch: 2, identity: 0.938

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
gtccaggagtcgagcgacttcctgtcccgtat	Protospacer
**.**************************.**

5. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to AB276040 (Ralstonia phage RSA1 DNA, complete genome) position: , mismatch: 4, identity: 0.875

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
gttcaggagtcgagcgacttcctgaaaagcat	Protospacer
************************    ****

6. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to NC_009382 (Ralstonia phage phiRSA1, complete genome) position: , mismatch: 4, identity: 0.875

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
gttcaggagtcgagcgacttcctgaaaagcat	Protospacer
************************    ****

7. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_LR134455 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 13, complete sequence) position: , mismatch: 5, identity: 0.844

ggtgcg-ggcgagttcgcgctgccgggcctgtc	CRISPR spacer
-gcgcgcggcgagatcgcgctgccgggcgtgtg	Protospacer
 *.*** ****** ************** ***

8. spacer 1.3|1127787|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021029 (Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence) position: , mismatch: 6, identity: 0.812

ctcggcgcgcttgatggtgcggcgtcgcggga---	CRISPR spacer
ctcgccgcacttgatggtgcgg---cgcgggcacc	Protospacer
**** ***.*************   ******

9. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038638 (Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.812

cgcctgaagcacggcggcaatgcggtgctgcg	CRISPR spacer
ctgatgcggcacggcggcaacgcggtgctgcg	Protospacer
*   ** .************.***********

10. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 6, identity: 0.812

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
atcctcaagcgcggcggcaatgcggtcgatgc-	Protospacer
  *** ****.*************** * ***

11. spacer 1.3|1127787|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 7, identity: 0.781

ctcggcgcgcttgatggtgcggcgtcgcggga-	CRISPR spacer
atcggcgcgcgtgatggcgcggcgat-cggcat	Protospacer
 ********* ******.****** . *** *

12. spacer 1.3|1127787|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 7, identity: 0.781

ctcggcgcgcttgatggtgcggcgtcgcggga-	CRISPR spacer
atcggcgcgcgtgatggcgcggcgat-cggcat	Protospacer
 ********* ******.****** . *** *

13. spacer 1.3|1127787|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to CP000621 (Burkholderia vietnamiensis G4 plasmid pBVIE05, complete sequence) position: , mismatch: 7, identity: 0.781

ctcggcgcgcttgatggtgcggcg----tcgcggga	CRISPR spacer
atcggcgagcttgatgatgcggcggatttcgc----	Protospacer
 ****** ********.*******    ****

14. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggtgctgcg	CRISPR spacer
gccctgaagcacggcgtcaacgcggtgaaacg	Protospacer
  ************** ***.******  .**

15. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

16. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

17. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

18. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

19. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

20. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

21. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

22. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

23. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

24. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

25. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

26. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcacggcggcaatgccgtggatgc-	Protospacer
   ** ***************** ** * ***

27. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcacggcggcaatgccgtggatgc-	Protospacer
   ** ***************** ** * ***

28. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

29. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

30. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

31. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

32. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

33. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

34. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

35. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

36. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

37. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

38. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

39. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

40. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcacggcggcaatgccgtggatgc-	Protospacer
   ** ***************** ** * ***

41. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

42. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

43. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

44. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgcctgaagcacggcggcaatgcggt-gctgcg	CRISPR spacer
gtgctcaagcgcggcggcaatgcggtggatgc-	Protospacer
   ** ****.*************** * ***

45. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
tacaccggcgtgttcgcgctgccgagcctgtc	Protospacer
 ...* **** *************.*******

46. spacer 1.14|1128459|30|NC_017574|CRISPRCasFinder matches to KT367887 (Klebsiella phage vB_Kp3, complete genome) position: , mismatch: 7, identity: 0.767

ctgcgccaacagcttaccgttgatcgtgcc	CRISPR spacer
ctgcgccgacagcttgccgttgatatccgc	Protospacer
*******.*******.********  .  *

47. spacer 1.14|1128459|30|NC_017574|CRISPRCasFinder matches to NC_048807 (Erwinia phage pEp_SNUABM_01, complete genome) position: , mismatch: 7, identity: 0.767

ctgcgccaacagcttaccgttgatcgtgcc	CRISPR spacer
cttcgccaacagcttaccgttcttcatcaa	Protospacer
** ******************  **.*

48. spacer 2.5|1137717|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 7, identity: 0.781

tacggcgtgggcgtctggcagcagcagaacgc--	CRISPR spacer
gacggcgccggcgtctggcagcag--gtccgccg	Protospacer
 ******. ***************  *  ***

49. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to MT723937 (Gordonia phage JKSyngboy, complete genome) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggtgtgagcct	CRISPR spacer
ggcggcgtcggcgggctgaacggtgtgcgtcc	Protospacer
  *****.***********.******* *.*.

50. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggt----gtgagcct	CRISPR spacer
cccggcgccggccggctgagccgtcaccgtgg----	Protospacer
************ ******** **    ***.

51. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggt-gtgagcct	CRISPR spacer
accggcgccggccgactgagcggtcgttggcg-	Protospacer
 *********** *.********* ** .**

52. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggt-gtgagcct	CRISPR spacer
accggcgccggccgactgagcggtcgttggcg-	Protospacer
 *********** *.********* ** .**

53. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggt-gtgagcct	CRISPR spacer
accggcgccggccgactgagcggtcgttggcg-	Protospacer
 *********** *.********* ** .**

54. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggt-gtgagcct	CRISPR spacer
accggcgccggccgactgagcggtcgttggcg-	Protospacer
 *********** *.********* ** .**

55. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggt-gtgagcct	CRISPR spacer
accggcgccggccgactgagcggtcgttggcg-	Protospacer
 *********** *.********* ** .**

56. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggt-gtgagcct	CRISPR spacer
accggcgccggccgactgagcggtcgttggcg-	Protospacer
 *********** *.********* ** .**

57. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggt-gtgagcct	CRISPR spacer
accggcgccggccgactgagcggtcgttggcg-	Protospacer
 *********** *.********* ** .**

58. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

cccggcgccggcgggctgagcggt-gtgagcct	CRISPR spacer
accggcgccggccgactgagcggtcgttggcg-	Protospacer
 *********** *.********* ** .**

59. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MK864266 (Gordonia phage Arri, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgct	Protospacer
  **** ******** ***********. .*

60. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MH479910 (Gordonia phage Danyall, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgct	Protospacer
  **** ******** ***********. .*

61. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgct	Protospacer
  **** ******** ***********. .*

62. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MH479917 (Gordonia phage KimmyK, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgct	Protospacer
  **** ******** ***********. .*

63. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MK814761 (Gordonia phage SmokingBunny, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttccc	Protospacer
  **** ******** ***********.  *

64. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to KX557286 (Gordonia phage Twister6, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgct	Protospacer
  **** ******** ***********. .*

65. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MK967381 (Gordonia phage RogerDodger, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgct	Protospacer
  **** ******** ***********. .*

66. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MT310872 (Gordonia phage Evamon, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgct	Protospacer
  **** ******** ***********. .*

67. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MK864265 (Gordonia phage Barb, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgct	Protospacer
  **** ******** ***********. .*

68. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MN010760 (Gordonia phage Nubi, complete genome) position: , mismatch: 8, identity: 0.75

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttccc	Protospacer
  **** ******** ***********.  *

69. spacer 1.3|1127787|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 8, identity: 0.75

ctcggcgcgcttgatggtgcggcgtcgcggga	CRISPR spacer
gaaggcgcgctcgatggtgcggcgacgagcgg	Protospacer
   ********.************ ** * *.

70. spacer 1.3|1127787|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 8, identity: 0.75

ctcggcgcgcttgatggtgcggcgtcgcggga	CRISPR spacer
ctcggcgcgcttgacggtgccgcctggggttg	Protospacer
**************.***** ** * * *  .

71. spacer 1.3|1127787|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 8, identity: 0.75

ctcggcgcgcttgatggtgcggcgtcgcggga	CRISPR spacer
ctcggcgcgcttgacggtgccgcctggggttg	Protospacer
**************.***** ** * * *  .

72. spacer 1.3|1127787|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ctcggcgcgcttgatggtgcggcgtcgcggga	CRISPR spacer
atctggtcgcttgatggcgcggcgccgcggct	Protospacer
 ** *  **********.******.*****

73. spacer 1.11|1128276|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 8, identity: 0.75

cgcctgaagcacggcggcaatgcggtgctgcg	CRISPR spacer
gtctttccgcaaggcggcattgcggtgctgcg	Protospacer
  *.*   *** ******* ************

74. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP015097 (Pelagibaca abyssi strain JLT2014 plasmid pPABY7, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
gcggcgggcgaggtggcgctgccgggctttct	Protospacer
*  ********* * ************.* ..

75. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
gtcgcgggcgagttcgtgctgtcgggctcggg	Protospacer
* .*************.****.*****..*

76. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgcg-ggcgagttcgcgctgccgggcctgtc	CRISPR spacer
-atgcactgcgagttcgcgcagccgggcgtgca	Protospacer
 .***.  ************ ******* **.

77. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP045481 (Amycolatopsis sp. YIM 10 plasmid pAmyYIM10, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgcgggcgagttcgcgctgccgggcctgtc---	CRISPR spacer
ggtgcgggcgtggtcgcgctgcca---ctgctcgg	Protospacer
********** * **********.   ***..

78. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgcg-ggcgagttcgcgctgccgggcctgtc	CRISPR spacer
-atgcactgcgagttcgcgcagccgggcgtgca	Protospacer
 .***.  ************ ******* **.

79. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgcg-ggcgagttcgcgctgccgggcctgtc	CRISPR spacer
-atgcactgcgagttcgcgcagccgggcgtgca	Protospacer
 .***.  ************ ******* **.

80. spacer 1.14|1128459|30|NC_017574|CRISPRCasFinder matches to NC_011885 (Cyanothece sp. PCC 7425 plasmid pP742502, complete sequence) position: , mismatch: 8, identity: 0.733

ctgcgccaacagcttaccgttgatcgtgcc	CRISPR spacer
ccccgcaaacagcttaccgttgaacggttg	Protospacer
*. *** **************** **  .

81. spacer 2.1|1137473|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccggctcccttgccgtaggcgccccagttggc	CRISPR spacer
ccggctcccttgccggcggcgcccgtcctgcg	Protospacer
***************  *******   .**

82. spacer 2.1|1137473|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

ccggctcccttgccgtaggcgccccagttggc	CRISPR spacer
gcgccgcccttgccgtaggcgccctggtggcg	Protospacer
 ** * ******************..** *

83. spacer 2.2|1137534|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MN586049 (Gordonia phage Yarn, complete genome) position: , mismatch: 8, identity: 0.75

gcttccgtgtgcagcacactgatcaggccagc	CRISPR spacer
tcatccgtgtgcagcacactgagcagctgaat	Protospacer
 * ******************* *** . *..

84. spacer 2.2|1137534|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MN586036 (Gordonia phage AndPeggy, complete genome) position: , mismatch: 8, identity: 0.75

gcttccgtgtgcagcacactgatcaggccagc	CRISPR spacer
tcatccgtgtgcagcacactgagcagctgaat	Protospacer
 * ******************* *** . *..

85. spacer 2.2|1137534|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MN234215 (Gordonia phage SteamedHams, complete genome) position: , mismatch: 8, identity: 0.75

gcttccgtgtgcagcacactgatcaggccagc	CRISPR spacer
tcatccgtgtgcagcacactgagcagctgaat	Protospacer
 * ******************* *** . *..

86. spacer 2.5|1137717|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_014120 (Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence) position: , mismatch: 8, identity: 0.75

tacggcgtgggcgtctggcagcagcagaacgc	CRISPR spacer
ggaggcgtgagcgactggcagcagcagcttgc	Protospacer
 . ******.*** *************  .**

87. spacer 2.5|1137717|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017899 (Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence) position: , mismatch: 8, identity: 0.75

tacggcgtgggcgtctggcagcagcagaacgc	CRISPR spacer
gatggcgttggcgtcaggcagcagcacggcgt	Protospacer
 *.***** ****** ********** ..**.

88. spacer 2.5|1137717|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_015169 (Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence) position: , mismatch: 8, identity: 0.75

tacggcgtgggcgtctggcagcagcagaacgc	CRISPR spacer
cacggcgtgggcgtggggcagcaggccctcgc	Protospacer
.*************  ********     ***

89. spacer 2.7|1137840|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to AP014107 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C35-MedDCM-OCT-S24-C120, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

ctggacg---ggttcatccaatttttccggcagca	CRISPR spacer
---aacatttggttcatcaaatttttcaggcagta	Protospacer
   .**.   ******** ******** *****.*

90. spacer 2.9|1137962|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014598 (Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

acactgcgccagcaccgccccccgattccacc	CRISPR spacer
gccctgcgccagctccgccccctgatcaaacg	Protospacer
.* ********** ********.***.  **

91. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to NC_003278 (Pseudomonas phage phiCTX, complete genome) position: , mismatch: 8, identity: 0.75

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
attcaggagtccagcgagttcctgaagcagat	Protospacer
.********** ***** ******   *. **

92. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to KM389403 (UNVERIFIED: Pseudomonas phage F_HA1961sp/Pa1641 clone contig00003 genomic sequence) position: , mismatch: 8, identity: 0.75

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
attcaggagtccagcgagttcctgaagcagat	Protospacer
.********** ***** ******   *. **

93. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to Y13918 (Pseudomonas aeruginosa phage phi CTX DNA, complete genome) position: , mismatch: 8, identity: 0.75

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
attcaggagtccagcgagttcctgaagcagat	Protospacer
.********** ***** ******   *. **

94. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to AB008550 (Pseudomonas phage phiCTX DNA, complete genome) position: , mismatch: 8, identity: 0.75

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
attcaggagtccagcgagttcctgaagcagat	Protospacer
.********** ***** ******   *. **

95. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to MK034952 (Pseudomonas phage Dobby, complete genome) position: , mismatch: 8, identity: 0.75

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
attcaggagtccagcgagttcctgaagcagat	Protospacer
.********** ***** ******   *. **

96. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to CP054917 (Streptomyces sp. NA02950 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccggcgccggcgggctgagcggtgtgagcct	CRISPR spacer
gtcggcgccggcgggctgggcgatgttccgct	Protospacer
 .****************.***.***    **

97. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP022191 (Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccggcgccggcgggctgagcggtgtgagcct	CRISPR spacer
cccggcgccggcgagctgcgcggcctcgtcca	Protospacer
*************.**** ****. * . **

98. spacer 2.16|1138389|32|NC_017574|CRISPRCasFinder,CRT matches to MN369758 (Gordonia phage NHagos, complete genome) position: , mismatch: 8, identity: 0.75

cccggcgccggcgggctgagcggtgtgagcct	CRISPR spacer
cgcggcgtcggcgcgctgagcggtgaaggggt	Protospacer
* *****.***** *********** ..*  *

99. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MK864264 (Gordonia phage VanDeWege, complete genome) position: , mismatch: 9, identity: 0.719

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgtt	Protospacer
  **** ******** ***********. ..

100. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MK864267 (Gordonia phage Valary, complete genome) position: , mismatch: 9, identity: 0.719

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgtt	Protospacer
  **** ******** ***********. ..

101. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MT521998 (Gordonia phage Jambalaya, complete genome) position: , mismatch: 9, identity: 0.719

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgtt	Protospacer
  **** ******** ***********. ..

102. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_030913 (Gordonia phage Wizard, complete genome) position: , mismatch: 9, identity: 0.719

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgtt	Protospacer
  **** ******** ***********. ..

103. spacer 1.2|1127726|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MK305889 (Gordonia phage Mutzi, complete genome) position: , mismatch: 9, identity: 0.719

cgcgccgagcgtccgttccgcccgtggcaaca	CRISPR spacer
gccgcctagcgtccgatccgcccgtggttgtt	Protospacer
  **** ******** ***********. ..

104. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
aacaagggcgcgttcgcgctgtcgggcctggt	Protospacer
.... ***** **********.******** .

105. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcg-ggcgagttcgcgctgccgggcctgtc	CRISPR spacer
-ccgcacaccgagttcgcgcagccgggcccgta	Protospacer
  .**. . *********** ********.**

106. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_LR134447 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
cttcgcggcgagctcgcgctgacgggcctgca	Protospacer
  *   ******.******** ********.

107. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
ttcctgagcgagttcgcgctgccccgcctggc	Protospacer
  . .*.****************  ***** *

108. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
tcttcggccgagatcgcgctgccgggctcgcg	Protospacer
  * *** **** **************..*.

109. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcg-ggcgagttcgcgctgccgggcctgtc	CRISPR spacer
-ccgcacaccgagttcgcgcagccgggcccgta	Protospacer
  .**. . *********** ********.**

110. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcg-ggcgagttcgcgctgccgggcctgtc	CRISPR spacer
-ccgcacaccgagttcgcgcagccgggcccgta	Protospacer
  .**. . *********** ********.**

111. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgcg-ggcgagttcgcgctgccgggcctgtc	CRISPR spacer
-ccgcacaccgagttcgcgcagccgggcccgta	Protospacer
  .**. . *********** ********.**

112. spacer 2.2|1137534|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_015720 (Gordonia phage GTE2, complete genome) position: , mismatch: 9, identity: 0.719

gcttccgtgtgcagcacactgatcaggccagc	CRISPR spacer
tcatccgcgtgcagcacactgagcagctgaat	Protospacer
 * ****.************** *** . *..

113. spacer 2.2|1137534|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to KU963260 (Gordonia phage Emalyn, complete genome) position: , mismatch: 9, identity: 0.719

gcttccgtgtgcagcacactgatcaggccagc	CRISPR spacer
tcatccgcgtgcagcacactgagcagctgaat	Protospacer
 * ****.************** *** . *..

114. spacer 2.2|1137534|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to HQ403646 (Gordonia phage GTE2, complete sequence) position: , mismatch: 9, identity: 0.719

gcttccgtgtgcagcacactgatcaggccagc	CRISPR spacer
tcatccgcgtgcagcacactgagcagctgaat	Protospacer
 * ****.************** *** . *..

115. spacer 2.4|1137656|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MF768471 (Pseudomonas sp. Lz4W plasmid pLz4W, complete sequence) position: , mismatch: 9, identity: 0.719

actcatcgcctccccaggcttcgcgttgtgca	CRISPR spacer
agtaggggcttcccctggcttcgcgttgtgag	Protospacer
* * .  **.***** ************** .

116. spacer 2.4|1137656|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021135 (Pseudomonas fragi strain NMC25 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

actcatcgcctccccaggcttcgcgttgtgca	CRISPR spacer
agtaggggcttcccctggcttcgcgttgtgag	Protospacer
* * .  **.***** ************** .

117. spacer 2.4|1137656|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021135 (Pseudomonas fragi strain NMC25 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

actcatcgcctccccaggcttcgcgttgtgca	CRISPR spacer
agtaggggcttcccctggcttcgcgttgtgag	Protospacer
* * .  **.***** ************** .

118. spacer 2.5|1137717|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgtgggcgtctggcagcagcagaacgc	CRISPR spacer
gtgggcgtgggcggctggcggcagcacatagg	Protospacer
   ********** *****.****** *  *

119. spacer 2.5|1137717|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049142 (Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence) position: , mismatch: 9, identity: 0.719

tacggcgtgggcgtctggcagcagcagaacgc	CRISPR spacer
cgccacatgggcgtctgccagcagccgaaccg	Protospacer
..* .*.********** ******* ****

120. spacer 2.9|1137962|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MN543579 (Klebsiella pneumoniae strain PM48 plasmid pPM48_140, complete sequence) position: , mismatch: 9, identity: 0.719

acactgcgccagcaccgccccccgattccacc	CRISPR spacer
tccctccgccagcaccgccacccgatcagcgc	Protospacer
 * ** ************* ******.    *

121. spacer 2.9|1137962|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MN543581 (Klebsiella pneumoniae strain PM48TC plasmid pPM48TC_fusion, complete sequence) position: , mismatch: 9, identity: 0.719

acactgcgccagcaccgccccccgattccacc	CRISPR spacer
tccctccgccagcaccgccacccgatcagcgc	Protospacer
 * ** ************* ******.    *

122. spacer 2.9|1137962|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to LR134207 (Klebsiella aerogenes strain NCTC9667 genome assembly, plasmid: 2) position: , mismatch: 9, identity: 0.719

acactgcgccagcaccgccccccgattccacc	CRISPR spacer
tccctccgccagcaccgccacccgatcagcgc	Protospacer
 * ** ************* ******.    *

123. spacer 2.9|1137962|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

acactgcgccagcaccgccccccgattccacc	CRISPR spacer
tccctccgccagcaccgccacccgatcagcgc	Protospacer
 * ** ************* ******.    *

124. spacer 2.9|1137962|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acactgcgccagcaccgccccccgattccacc	CRISPR spacer
gcgatgcgccagcaccgcccgcagattgtcca	Protospacer
.*. **************** * **** . *

125. spacer 2.11|1138084|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 9, identity: 0.719

ccctgcctcaacatcttcagcgctgtagtact	CRISPR spacer
cagagcctccacatcttccgcgctgtagaggc	Protospacer
*   ***** ******** ********* . .

126. spacer 2.14|1138267|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP023740 (Methylosinus trichosporium OB3b plasmid pOB3b3, complete sequence) position: , mismatch: 9, identity: 0.719

gttcaggagtcgagcgacttcctgtcccgcat	CRISPR spacer
aagacgaagtcgagcgacttcccgtccagcgt	Protospacer
.    *.***************.**** **.*

127. spacer 1.9|1128154|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MH590592 (Mycobacterium phage Ryadel, complete genome) position: , mismatch: 10, identity: 0.688

gcttcatattcatcggcggggtgcatgtcttc	CRISPR spacer
agtattcgatcatcggcggtgtgcaagtcttc	Protospacer
. * . .. ********** ***** ******

128. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP030220 (Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence) position: , mismatch: 10, identity: 0.688

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
ctcccgggcctgttcgcgctgccgggcgcgga	Protospacer
  . *****  **************** .*

129. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP033743 (Citrobacter freundii strain FDAARGOS_549 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
ttcccgggcctgttcgcgctgccgggctcgga	Protospacer
  . *****  ****************..*

130. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP016453 (Sphingobium sp. RAC03 plasmid pBSY17_1, complete sequence) position: , mismatch: 10, identity: 0.688

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
gtcgcgggcgagttggcgctcccgggttatat	Protospacer
* .*********** ***** *****..   .

131. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP022492 (Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
ttcccgggcctgttcgcgctgccgggcgcgga	Protospacer
  . *****  **************** .*

132. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP022492 (Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
ttcccgggcctgttcgcgctgccgggcgcgga	Protospacer
  . *****  **************** .*

133. spacer 2.2|1137534|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.688

gcttccgtgtgcagcacactgatcaggccagc	CRISPR spacer
ccccaagtgtgcagcacgctggtcaggccgat	Protospacer
 *..  ***********.***.*******...

134. spacer 2.2|1137534|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.688

gcttccgtgtgcagcacactgatcaggccagc	CRISPR spacer
ccccaagtgtgcagcacgctggtcaggccgat	Protospacer
 *..  ***********.***.*******...

135. spacer 2.3|1137595|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MN582107 (Podoviridae sp. ctDWo9, complete genome) position: , mismatch: 10, identity: 0.688

catcggtgaaagagcattcttgacgggctgag	CRISPR spacer
aactacgcaaaaagcattcttgacggtctgaa	Protospacer
 *...   ***.************** ****.

136. spacer 2.5|1137717|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 10, identity: 0.688

tacggcgtgggcgtctggcagcagcagaacgc	CRISPR spacer
ctcggcgtgggcgtcccgcagcagctccgccg	Protospacer
. *************. ********   .*

137. spacer 2.10|1138023|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

gacttgaacaccgaggcctgggcccaggtcaa	CRISPR spacer
ctggcgaacaccgcggcatgggcccaggactg	Protospacer
    .******** *** ********** * .

138. spacer 2.10|1138023|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

gacttgaacaccgaggcctgggcccaggtcaa	CRISPR spacer
ctggcgaacaccgcggcatgggcccaggactg	Protospacer
    .******** *** ********** * .

139. spacer 2.13|1138206|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 10, identity: 0.688

cgagcgaggtgggccttgttgacctggccgag	CRISPR spacer
gcagcgcggtcggccttgttgaccttcatgcc	Protospacer
  **** *** **************   .*

140. spacer 2.15|1138328|32|NC_017574|CRISPRCasFinder,CRT matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 10, identity: 0.688

atgagcgggttacccgtcgcggcggcttttat	CRISPR spacer
ccgagcgagatacccgtcgcggcggcaagatc	Protospacer
 .*****.* ****************     .

141. spacer 1.1|1127665|32|NC_017574|PILER-CR,CRISPRCasFinder,CRT matches to MT889373 (Arthrobacter phage Brynnie, complete genome) position: , mismatch: 11, identity: 0.656

catatctacctgaacgaaactaagcggctcat	CRISPR spacer
acggcgaacctgaacgaaaacaagcggctcga	Protospacer
   ..  ************ .*********.

142. spacer 1.13|1128398|32|NC_017574|CRISPRCasFinder,CRT matches to NZ_CP050138 (Sphingomonas sp. CL5.1 plasmid pTSSC1, complete sequence) position: , mismatch: 11, identity: 0.656

ggtgcgggcgagttcgcgctgccgggcctgtc	CRISPR spacer
accttcttcgagttcgagctgccgggccggtt	Protospacer
. . .   ******** *********** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

229312 : 304645

Acidithiobacillus_phage(51.28%)

transposase,tail,capsid,terminase,portal,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014615684.1\|229312_229687_-	hypothetical protein	K4HZX2	Acidithiobacillus_phage	1.3e-40	65.4
WP_014615685.1\|229683_231063_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	1.2e-222	83.7
WP_014615686.1\|231059_231509_-	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	1.5e-54	70.9
WP_043911987.1\|231872_232547_+	hypothetical protein	NA	NA	NA	NA
WP_014615688.1\|232658_234896_-	hypothetical protein	K4I1D0	Acidithiobacillus_phage	1.2e-288	66.5
WP_042567662.1\|234943_235405_-	helix-turn-helix domain-containing protein	K4ICM4	Acidithiobacillus_phage	1.4e-44	60.1
WP_014615690.1\|235633_235897_+	helix-turn-helix domain-containing protein	K4I3X3	Acidithiobacillus_phage	3.5e-19	74.2
WP_014615691.1\|235907_236390_+	hypothetical protein	K4HZ96	Acidithiobacillus_phage	4.5e-41	56.1
WP_014615692.1\|236386_237259_+	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	5.4e-109	71.4
WP_014615693.1\|237255_237903_+	hypothetical protein	K4ICM8	Acidithiobacillus_phage	7.4e-79	69.9
WP_014615694.1\|237910_238387_+	hypothetical protein	K4I3X7	Acidithiobacillus_phage	5.3e-50	64.4
WP_014615695.1\|238386_239124_+	hypothetical protein	K4HZA0	Acidithiobacillus_phage	8.3e-111	77.8
WP_043912411.1\|239120_239381_+	hypothetical protein	K4I1D6	Acidithiobacillus_phage	2.3e-15	67.7
WP_014615697.1\|239377_241666_+	hypothetical protein	K4HZY1	Acidithiobacillus_phage	2.8e-290	63.6
WP_014615698.1\|241786_242251_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	6.5e-53	67.6
WP_014615699.1\|242252_242462_+	hypothetical protein	NA	NA	NA	NA
WP_174264960.1\|242454_242838_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014615701.1\|242892_243159_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_014615702.1\|243158_243458_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_014615704.1\|244022_245426_+	site-specific DNA-methyltransferase	K4I3Y2	Acidithiobacillus_phage	5.9e-166	62.3
WP_014615705.1\|245422_246658_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	4.4e-189	79.4
WP_043947550.1\|246617_246863_-	hypothetical protein	NA	NA	NA	NA
WP_014615706.1\|247016_247205_-	hypothetical protein	K4HZY7	Acidithiobacillus_phage	1.2e-13	63.2
WP_014615707.1\|247368_247737_+	hypothetical protein	NA	NA	NA	NA
WP_042550039.1\|247920_248271_-	hypothetical protein	NA	NA	NA	NA
WP_014615710.1\|248397_248871_-	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	2.1e-22	70.1
WP_124994662.1\|248986_249259_-	hypothetical protein	NA	NA	NA	NA
WP_014615712.1\|249350_249887_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	1.1e-72	80.9
WP_014615713.1\|249886_251866_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	86.0
WP_014615714.1\|251908_252418_+	hypothetical protein	A0A0F6WCR7	Sinorhizobium_phage	3.9e-27	47.4
WP_014615715.1\|252428_252821_+	hypothetical protein	NA	NA	NA	NA
WP_014615716.1\|252820_253042_+	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	5.9e-12	61.6
WP_014615717.1\|253041_254580_+\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	3.8e-150	57.0
WP_014615718.1\|254589_255849_+	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	9.3e-62	41.9
WP_014615719.1\|255858_256236_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	7.9e-25	50.4
WP_014615720.1\|256242_257247_+\|capsid	major capsid protein	A0A1B2LRS0	Wolbachia_phage	4.3e-110	66.0
WP_014615721.1\|257249_257552_+	hypothetical protein	NA	NA	NA	NA
WP_014615722.1\|257558_258005_+	hypothetical protein	F4YCS3	Synechococcus_phage	3.4e-06	31.7
WP_014615723.1\|258121_258895_+	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	1.1e-49	45.6
WP_014615724.1\|258903_259296_+	hypothetical protein	NA	NA	NA	NA
WP_014615725.1\|259292_259514_+	hypothetical protein	NA	NA	NA	NA
WP_014615726.1\|259488_260133_+	hypothetical protein	NA	NA	NA	NA
WP_014615727.1\|260175_260466_-	H-NS histone family protein	NA	NA	NA	NA
WP_080773970.1\|260933_262097_+	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	1.8e-96	55.3
WP_080773971.1\|262603_263104_+	hypothetical protein	NA	NA	NA	NA
WP_042549534.1\|263165_263396_+	hypothetical protein	NA	NA	NA	NA
WP_014615731.1\|263518_264394_-	hypothetical protein	NA	NA	NA	NA
WP_014615732.1\|264692_268793_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	2.2e-27	28.5
WP_014615733.1\|268802_269198_+	hypothetical protein	A0A0M4UTA7	Ralstonia_phage	1.0e-30	50.8
WP_014615734.1\|269184_269757_-	hypothetical protein	NA	NA	NA	NA
WP_014615735.1\|269786_273374_+	hypothetical protein	A0A0M4U447	Ralstonia_phage	0.0e+00	53.2
WP_014615736.1\|273388_274555_+	hypothetical protein	NA	NA	NA	NA
WP_014615737.1\|274558_275041_+	hypothetical protein	A0A0M4TU90	Ralstonia_phage	8.6e-16	52.0
WP_014615738.1\|275037_275436_+	hypothetical protein	A0A1E1GE27	Vibrio_phage	5.8e-10	33.3
WP_043911995.1\|275440_277285_+	hypothetical protein	A0A0M4UKC5	Ralstonia_phage	4.3e-108	45.0
WP_014615740.1\|277294_277519_+	hypothetical protein	NA	NA	NA	NA
WP_014615741.1\|277585_277876_+	membrane protein	K4I011	Acidithiobacillus_phage	5.3e-13	47.6
WP_014615742.1\|277872_278355_+	hypothetical protein	K4ICR8	Acidithiobacillus_phage	4.4e-60	73.5
WP_014615743.1\|278478_278940_+	lysozyme	K4I410	Acidithiobacillus_phage	1.5e-65	80.3
WP_014615744.1\|279007_279304_+	hypothetical protein	NA	NA	NA	NA
WP_014615745.1\|279355_279694_-	DUF1484 family protein	NA	NA	NA	NA
WP_043911996.1\|280111_280441_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_052307009.1\|280855_281134_+	hypothetical protein	NA	NA	NA	NA
WP_014615747.1\|281268_282411_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_043911998.1\|282671_282929_-	hypothetical protein	NA	NA	NA	NA
WP_014615748.1\|284109_284769_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_124994746.1\|284846_285566_+	queuosine precursor transporter	NA	NA	NA	NA
WP_014615750.1\|285492_286263_+	metallophosphoesterase	NA	NA	NA	NA
WP_042567836.1\|286377_286923_-	hypothetical protein	NA	NA	NA	NA
WP_052484309.1\|297368_297839_+	hypothetical protein	NA	NA	NA	NA
WP_086002900.1\|298009_298549_+	hypothetical protein	NA	NA	NA	NA
WP_043912003.1\|298664_300428_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_043912423.1\|300451_301885_+	DUF746 domain-containing protein	NA	NA	NA	NA
WP_014615757.1\|302503_303193_+	hypothetical protein	NA	NA	NA	NA
WP_086002887.1\|303434_304645_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	6.1e-103	65.1

DBSCAN-SWA_2

909940 : 920078

Hokovirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014616227.1\|909940_911899_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.4e-144	51.3
WP_003273455.1\|912032_913178_+	molecular chaperone DnaJ	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	1.9e-21	32.0
WP_014616228.1\|913213_915100_+	bifunctional anthranilate synthase component I family protein/class IV aminotransferase	A0A0B5J984	Pandoravirus	5.2e-56	37.1
WP_014616229.1\|915055_915742_-	energy-coupling factor ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	7.7e-10	23.2
WP_014616230.1\|915749_916457_-	ABC transporter permease	NA	NA	NA	NA
WP_014616231.1\|916463_917285_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	6.3e-35	31.3
WP_014616232.1\|917341_917986_-	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	2.8e-06	30.1
WP_014616233.1\|918018_918528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_014616234.1\|918527_920078_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	5.6e-24	34.5

DBSCAN-SWA_3

1565706 : 1612646

Pseudomonas_phage(20.0%)

transposase,integrase

attL 1577148:1577165|attR 1619437:1619454

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086002885.1\|1565706_1566511_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.0e-24	32.8
WP_042548748.1\|1567402_1567726_-	hypothetical protein	NA	NA	NA	NA
WP_014616758.1\|1568169_1568637_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_014616759.1\|1568633_1570931_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_014616760.1\|1570977_1571571_-	peroxidase-related enzyme	NA	NA	NA	NA
WP_014616761.1\|1571567_1573478_-	acyl-CoA thioesterase/BAAT N-terminal domain-containing protein	NA	NA	NA	NA
WP_014616762.1\|1573485_1575054_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014616763.1\|1575091_1576093_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_014616764.1\|1576089_1577088_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-15	28.3
WP_043912166.1\|1577084_1578029_-	ABC transporter permease	NA	NA	NA	NA
1577148:1577165	attL	NA	NA	NA	NA
WP_014616766.1\|1578025_1579012_-	ABC transporter permease	NA	NA	NA	NA
WP_014616767.1\|1579008_1580529_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014616768.1\|1580525_1581500_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014616769.1\|1581652_1582804_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_042549457.1\|1583035_1583638_-	lipoprotein	NA	NA	NA	NA
WP_003265554.1\|1583946_1584849_-	lipid A hydroxylase LpxO	S4VR59	Pandoravirus	9.4e-40	39.7
WP_003265553.1\|1585131_1585677_+	hypothetical protein	NA	NA	NA	NA
WP_014616771.1\|1585685_1586078_-	hypothetical protein	NA	NA	NA	NA
WP_039548533.1\|1586213_1587017_+	DUF4743 domain-containing protein	NA	NA	NA	NA
WP_014616773.1\|1587024_1587891_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_014616774.1\|1587913_1588642_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	8.1e-34	36.8
WP_014616775.1\|1588943_1589990_+\|integrase	site-specific integrase	A0A0A1I5U0	Burkholderia_phage	5.2e-66	42.0
WP_042567710.1\|1590076_1590298_+	hypothetical protein	NA	NA	NA	NA
WP_042567711.1\|1590294_1590600_+	hypothetical protein	NA	NA	NA	NA
WP_014616777.1\|1590606_1590909_+	hypothetical protein	NA	NA	NA	NA
WP_014616778.1\|1590908_1591445_+	hypothetical protein	NA	NA	NA	NA
WP_086002891.1\|1591632_1592756_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.4e-56	43.9
WP_080894512.1\|1592857_1594861_+	DotA/TraY family protein	NA	NA	NA	NA
WP_014616782.1\|1594915_1595173_-	hypothetical protein	NA	NA	NA	NA
WP_014616783.1\|1595169_1595349_-	hypothetical protein	NA	NA	NA	NA
WP_014616785.1\|1595858_1596389_-	hypothetical protein	NA	NA	NA	NA
WP_014616786.1\|1596449_1596653_-	hypothetical protein	NA	NA	NA	NA
WP_014616787.1\|1596781_1597357_-	exonuclease domain-containing protein	NA	NA	NA	NA
WP_124994721.1\|1597532_1598069_-	hypothetical protein	NA	NA	NA	NA
WP_014616790.1\|1599926_1600442_+	hypothetical protein	NA	NA	NA	NA
WP_124994758.1\|1600503_1603617_+	N-6 DNA methylase	NA	NA	NA	NA
WP_014616792.1\|1603613_1604378_+	Fis family transcriptional regulator	NA	NA	NA	NA
WP_086002887.1\|1605124_1606335_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	6.1e-103	65.1
WP_086002887.1\|1606696_1607906_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	6.1e-103	65.1
WP_014616797.1\|1608811_1609510_-	hypothetical protein	NA	NA	NA	NA
WP_014615828.1\|1610844_1611633_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.2e-78	59.2
WP_039548595.1\|1611629_1612646_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.9e-71	43.0
1619437:1619454	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2256810 : 2264475

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003274989.1\|2256810_2257236_-	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	1.3e-20	42.9
WP_014617323.1\|2257606_2258308_+	Bax inhibitor-1/YccA family protein	A0A0K1L791	Scale_drop_disease_virus	1.1e-06	27.2
WP_080773954.1\|2258404_2259787_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	3.4e-25	25.4
WP_014617325.1\|2259911_2260781_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_014617326.1\|2260809_2261940_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	4.5e-31	33.1
WP_003263848.1\|2261948_2262776_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	1.4e-05	32.4
WP_003263847.1\|2262777_2263704_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-33	46.1
WP_003268516.1\|2263719_2264475_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	52.4

DBSCAN-SWA_5

2546084 : 2554315

Planktothrix_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003278001.1\|2546084_2547134_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-33	39.9
WP_014617549.1\|2547292_2548216_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	8.4e-44	35.8
WP_042548876.1\|2548333_2549446_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_039550140.1\|2549524_2550427_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	3.7e-52	40.8
WP_014617552.1\|2550530_2550848_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_014617553.1\|2550976_2551972_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	1.1e-28	32.7
WP_014617554.1\|2551968_2552916_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	A0A2H4N7X4	Lake_Baikal_phage	3.1e-17	27.3
WP_014617555.1\|2552941_2554315_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	8.0e-75	38.4

DBSCAN-SWA_6

2598440 : 2648457

Acidithiobacillus_phage(31.25%)

transposase,tail,capsid,terminase,portal,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014617584.1\|2598440_2598917_-	lysozyme	K4I410	Acidithiobacillus_phage	2.4e-66	78.8
WP_014617585.1\|2598913_2599396_-	hypothetical protein	K4ICR8	Acidithiobacillus_phage	3.1e-66	80.1
WP_014617586.1\|2599392_2599683_-	hypothetical protein	K4I011	Acidithiobacillus_phage	7.0e-13	46.4
WP_042549626.1\|2599749_2599974_-	hypothetical protein	NA	NA	NA	NA
WP_043912317.1\|2601177_2603022_-	hypothetical protein	A0A0M4UKC5	Ralstonia_phage	1.2e-105	44.5
WP_014615738.1\|2603026_2603425_-	hypothetical protein	A0A1E1GE27	Vibrio_phage	5.8e-10	33.3
WP_014615737.1\|2603421_2603904_-	hypothetical protein	A0A0M4TU90	Ralstonia_phage	8.6e-16	52.0
WP_014615736.1\|2603907_2605074_-	hypothetical protein	NA	NA	NA	NA
WP_014617589.1\|2605088_2608676_-	hypothetical protein	A0A0M4U447	Ralstonia_phage	0.0e+00	53.2
WP_014617590.1\|2608676_2609072_-	hypothetical protein	A0A0M4UTA7	Ralstonia_phage	1.6e-31	50.8
WP_014617591.1\|2609077_2613178_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	2.9e-27	28.8
WP_014617592.1\|2613252_2613504_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_014617593.1\|2613500_2613914_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_124994719.1\|2613918_2614152_-	hypothetical protein	NA	NA	NA	NA
WP_014617595.1\|2614351_2615818_+	YOPP/AvrRxv family protein	NA	NA	NA	NA
WP_014617596.1\|2616012_2616303_+	H-NS histone family protein	NA	NA	NA	NA
WP_014617597.1\|2616345_2616990_-	hypothetical protein	NA	NA	NA	NA
WP_014617598.1\|2616964_2617186_-	hypothetical protein	NA	NA	NA	NA
WP_014617599.1\|2617182_2617575_-	hypothetical protein	NA	NA	NA	NA
WP_014617600.1\|2617583_2618357_-	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	3.6e-48	44.4
WP_014617601.1\|2618464_2618911_-	hypothetical protein	F4YCS3	Synechococcus_phage	2.0e-06	30.0
WP_014617602.1\|2618917_2619220_-	hypothetical protein	NA	NA	NA	NA
WP_014617603.1\|2619222_2620227_-\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	1.0e-111	59.2
WP_014615719.1\|2620233_2620611_-\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	7.9e-25	50.4
WP_014615718.1\|2620620_2621880_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	9.3e-62	41.9
WP_014617604.1\|2621889_2623428_-\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	3.5e-151	55.8
WP_014617605.1\|2623427_2623649_-	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	2.6e-12	58.9
WP_014617606.1\|2623648_2624041_-	hypothetical protein	NA	NA	NA	NA
WP_014617607.1\|2624051_2624561_-	hypothetical protein	A0A0F6WCR7	Sinorhizobium_phage	1.8e-27	47.4
WP_014617608.1\|2624604_2626584_-\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	85.7
WP_014617609.1\|2626583_2627120_-	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	1.0e-70	79.2
WP_124994712.1\|2627211_2627478_+	hypothetical protein	NA	NA	NA	NA
WP_014617611.1\|2627593_2628088_+	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	2.0e-20	64.3
WP_042549516.1\|2628211_2628403_+	hypothetical protein	NA	NA	NA	NA
WP_014617613.1\|2628705_2629617_+	hypothetical protein	NA	NA	NA	NA
WP_014617614.1\|2629852_2630221_-	hypothetical protein	NA	NA	NA	NA
WP_014617615.1\|2630384_2630573_+	hypothetical protein	K4HZY7	Acidithiobacillus_phage	1.2e-13	63.2
WP_014617616.1\|2630725_2631106_+	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	5.0e-35	63.8
WP_014617617.1\|2631743_2632991_+	hypothetical protein	NA	NA	NA	NA
WP_014617618.1\|2633109_2634381_-	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	1.3e-196	80.5
WP_014617619.1\|2634377_2635781_-	site-specific DNA-methyltransferase	K4I3Y2	Acidithiobacillus_phage	2.0e-161	61.1
WP_014617620.1\|2636193_2636601_-	hypothetical protein	NA	NA	NA	NA
WP_014617621.1\|2636590_2636803_-	hypothetical protein	NA	NA	NA	NA
WP_014617622.1\|2637033_2639343_-	hypothetical protein	K4HZY1	Acidithiobacillus_phage	4.8e-298	65.0
WP_014617623.1\|2639326_2639716_-	hypothetical protein	NA	NA	NA	NA
WP_014617624.1\|2639721_2640189_-	hypothetical protein	K4I3X7	Acidithiobacillus_phage	4.1e-39	53.9
WP_014617625.1\|2640198_2640831_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	3.5e-65	60.1
WP_042548984.1\|2640849_2641722_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	4.1e-101	66.1
WP_014617627.1\|2641718_2642216_-	hypothetical protein	NA	NA	NA	NA
WP_014617628.1\|2642212_2642497_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_124994713.1\|2642700_2643081_+	hypothetical protein	NA	NA	NA	NA
WP_086002887.1\|2643630_2644840_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	6.1e-103	65.1
WP_148264711.1\|2644845_2646717_+	ParB N-terminal domain-containing protein	Q7Y4B3	Escherichia_virus	7.2e-10	22.6
WP_014617629.1\|2646655_2647444_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-79	59.6
WP_039548595.1\|2647440_2648457_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.9e-71	43.0

DBSCAN-SWA_7

2848727 : 2856284

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014617798.1\|2848727_2849981_+	Hsp70 family protein	M4R062	Micromonas_pusilla_virus	4.7e-13	23.9
WP_086002893.1\|2850321_2851444_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.4e-56	43.9
WP_014617801.1\|2851480_2852404_-	recombination-associated protein RdgC	A0A218M310	Acidovorax_phage	3.2e-59	41.3
WP_014617803.1\|2852820_2853021_-	hypothetical protein	NA	NA	NA	NA
WP_039550581.1\|2853017_2853452_-	HD domain-containing protein	A0A2D1A475	Rhodococcus_phage	1.4e-20	40.6
WP_014617804.1\|2853468_2853708_-	hypothetical protein	NA	NA	NA	NA
WP_039550586.1\|2853952_2854372_+	DUF4288 domain-containing protein	NA	NA	NA	NA
WP_014615828.1\|2854482_2855271_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.2e-78	59.2
WP_039548595.1\|2855267_2856284_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.9e-71	43.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017575

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

69853 : 78876

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014618388.1\|69853_70642_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	6.9e-79	59.2
WP_039548595.1\|70638_71655_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.9e-71	43.0
WP_014618389.1\|71850_73164_-	MFS transporter	Q6JIH2	Burkholderia_virus	5.6e-41	28.1
WP_014618390.1\|73376_73682_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.3e-14	48.4
WP_014618391.1\|73678_73987_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.4e-18	44.8
WP_003262834.1\|74062_75262_-	MFS transporter	NA	NA	NA	NA
WP_014618393.1\|76158_78876_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.9e-88	33.1

DBSCAN-SWA_2

463524 : 525595

Bacillus_phage(37.5%)

transposase,coat,integrase

attL 464004:464019|attR 472726:472741

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039548595.1\|463524_464541_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.9e-71	43.0
464004:464019	attL	NA	NA	NA	NA
WP_014615828.1\|464537_465326_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.2e-78	59.2
WP_039551881.1\|465472_465772_+	hypothetical protein	NA	NA	NA	NA
WP_014618699.1\|465793_466021_+	hypothetical protein	NA	NA	NA	NA
WP_080773948.1\|466417_468094_-	glycoside hydrolase family 6 protein	NA	NA	NA	NA
WP_014618704.1\|470055_471480_-	amino acid permease	NA	NA	NA	NA
WP_014618705.1\|471581_471959_-	endoribonuclease L-PSP	NA	NA	NA	NA
WP_124994708.1\|472291_472633_-\|integrase	integrase	NA	NA	NA	NA
WP_080687884.1\|473313_473658_-	hypothetical protein	NA	NA	NA	NA
472726:472741	attR	NA	NA	NA	NA
WP_014618708.1\|473893_477016_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_014618709.1\|477012_478125_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_042549724.1\|478212_478827_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014618711.1\|478914_480375_+	TolC family protein	NA	NA	NA	NA
WP_014618712.1\|480434_481241_+	oxidoreductase	W8CYX9	Bacillus_phage	1.5e-09	46.8
WP_014618713.1\|481290_482751_+	MFS transporter	NA	NA	NA	NA
WP_014618715.1\|483027_483957_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_014618716.1\|483961_484348_-	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA
WP_014618717.1\|484381_485356_-	copper resistance protein B	NA	NA	NA	NA
WP_014618718.1\|485355_487227_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_014618719.1\|487401_488088_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	5.5e-32	36.2
WP_014618720.1\|488087_489485_+	heavy metal sensor histidine kinase	W8CYF6	Bacillus_phage	9.8e-20	26.7
WP_042549726.1\|489626_489869_+	hypothetical protein	NA	NA	NA	NA
WP_039551918.1\|489977_490187_+	hypothetical protein	NA	NA	NA	NA
WP_086002906.1\|490356_492621_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.3e-87	35.2
WP_014618724.1\|492670_492916_-	hypothetical protein	NA	NA	NA	NA
WP_080687885.1\|493612_493885_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_081110019.1\|494528_494768_+	hypothetical protein	NA	NA	NA	NA
WP_158307903.1\|494976_495324_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_042549507.1\|503829_504285_+	hypothetical protein	NA	NA	NA	NA
WP_148264714.1\|504490_504766_+	hypothetical protein	NA	NA	NA	NA
WP_086002885.1\|504714_505519_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.0e-24	32.8
WP_081110017.1\|505513_505843_+	DUF4265 domain-containing protein	NA	NA	NA	NA
WP_014618728.1\|505998_508539_+	filamentous hemagglutinin N-terminal domain-containing protein	A0A0R6PJK4	Moraxella_phage	3.7e-17	30.5
WP_014618729.1\|508553_510311_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_014618730.1\|510323_511169_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_042549234.1\|511514_512633_+	Fic family protein	NA	NA	NA	NA
WP_080773878.1\|512946_515607_-	DNA helicase	NA	NA	NA	NA
WP_124994738.1\|516358_519316_+	LodA/GoxA family CTQ-dependent oxidase	NA	NA	NA	NA
WP_124994739.1\|519336_520398_+	tryptophan 7-halogenase	NA	NA	NA	NA
WP_174265895.1\|520999_521458_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_039551974.1\|521508_522234_+	molecular chaperone	NA	NA	NA	NA
WP_042549231.1\|522233_524621_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_086002912.1\|524677_525595_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017574

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017575

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection