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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017317 Corynebacterium ulcerans 809, complete sequence 3 crisprs cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,cas2,csb3,csb2gr5,csb1gr7,DEDDh,csa3,WYL,DinG 1 48 4 0

Results visualization

1. NC_017317
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017317_1 27292-29029 TypeI-E I-C,I-E,II-B
28 spacers
cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017317_2 111684-112598 Unclear NA
12 spacers
cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017317_3 1954889-1959007 Orphan I-C,I-E,II-B
67 spacers
DinG

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017317_3 3.6|1955223|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955223-1955254 32 NC_017317.1 176437-176468 0 1.0

1. spacer 3.6|1955223|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to position: 176437-176468, mismatch: 0, identity: 1.0 

ggagttattgaggtgcatcatgaatggaactc	CRISPR spacer
ggagttattgaggtgcatcatgaatggaactc	Protospacer
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017317_3 3.23|1956261|31|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956261-1956291 31 NC_006945 Bacillus phage GIL16c, complete genome 7803-7833 5 0.839
NC_017317_3 3.23|1956261|31|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956261-1956291 31 AY701338 Bacillus thuringiensis phage GIL16c, complete genome 7803-7833 5 0.839
NC_017317_3 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT 1957848-1957879 32 LN681539 Clostridium phage phiCD505, complete genome 34058-34089 6 0.812
NC_017317_3 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT 1957848-1957879 32 JX145341 Clostridium phage phiMMP02, complete genome 33287-33318 6 0.812
NC_017317_3 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT 1958764-1958795 32 JQ809663 Stenotrophomonas phage Smp131, complete genome 17694-17725 6 0.812
NC_017317_1 1.12|27992|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 27992-28023 32 NC_015166 Bacteroides salanitronis DSM 18170 plasmid pBACSA03, complete sequence 217-248 7 0.781
NC_017317_1 1.28|28969|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28969-29000 32 NZ_CP017963 Virgibacillus halodenitrificans strain PDB-F2 plasmid unnamed1, complete sequence 6131-6162 7 0.781
NC_017317_1 1.28|28969|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28969-29000 32 NZ_KU306397 Corynebacterium glutamicum strain DSM 1412 plasmid pBL90, complete sequence 37793-37824 7 0.781
NC_017317_3 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955467-1955498 32 NC_004953 Corynebacterium jeikeium plasmid pCJ84, complete sequence 1802-1833 7 0.781
NC_017317_3 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955467-1955498 32 KX620751 Propionibacterium phage Doucette, complete genome 8574-8605 7 0.781
NC_017317_3 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955467-1955498 32 KX620754 Propionibacterium phage G4, complete genome 8563-8594 7 0.781
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 NZ_CP017105 Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence 459156-459187 7 0.781
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 627532-627563 7 0.781
NC_017317_3 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956200-1956231 32 KC292029 Halovirus HCTV-1, complete genome 63492-63523 7 0.781
NC_017317_3 3.30|1956690|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956690-1956721 32 MN693483 Marine virus AFVG_25M516, complete genome 22309-22340 7 0.781
NC_017317_3 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT 1957422-1957453 32 NC_034248 Rhizobium phage RHEph10, complete genome 27152-27183 7 0.781
NC_017317_3 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT 1957422-1957453 32 MN585963 Gordonia phage Wocket, complete genome 14592-14623 7 0.781
NC_017317_3 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT 1958764-1958795 32 NZ_CP012183 Pseudonocardia sp. EC080610-09 plasmid pBCI2-2, complete sequence 43969-44000 7 0.781
NC_017317_3 3.66|1958886|32|NC_017317|CRISPRCasFinder,CRT 1958886-1958917 32 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 292345-292376 7 0.781
NC_017317_1 1.12|27992|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 27992-28023 32 NZ_AP017309 Leptolyngbya sp. NIES-3755 plasmid plasmid1 DNA, complete genome 57734-57765 8 0.75
NC_017317_1 1.15|28175|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28175-28206 32 NZ_CP025432 Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence 208253-208284 8 0.75
NC_017317_1 1.22|28602|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28602-28633 32 NZ_AP018205 Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome 550043-550074 8 0.75
NC_017317_1 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28908-28939 32 MT670422 Pseudomonas phage phiPsa397, complete genome 45090-45121 8 0.75
NC_017317_1 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28908-28939 32 NC_023601 Pseudomonas phage phiPsa374, complete genome 44244-44275 8 0.75
NC_017317_1 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28908-28939 32 MT670418 Pseudomonas phage phiPsa300, complete genome 45235-45266 8 0.75
NC_017317_1 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28908-28939 32 MT670420 Pseudomonas phage phiPsa347, complete genome 45160-45191 8 0.75
NC_017317_1 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28908-28939 32 MT670421 Pseudomonas phage phiPsa381, complete genome 44038-44069 8 0.75
NC_017317_1 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28908-28939 32 MT670417 Pseudomonas phage phiPsa267, complete genome 45265-45296 8 0.75
NC_017317_3 3.1|1954918|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1954918-1954949 32 MT773556 Myoviridae sp. isolate BML_4 genomic sequence 138798-138829 8 0.75
NC_017317_3 3.4|1955101|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955101-1955132 32 NC_009779 Cronobacter sakazakii ATCC BAA-894 plasmid pESA2, complete sequence 5480-5511 8 0.75
NC_017317_3 3.8|1955345|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955345-1955376 32 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 353276-353307 8 0.75
NC_017317_3 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955467-1955498 32 NC_049431 Vibrio phage 1.097.O._10N.286.49.B3, partial genome 14017-14048 8 0.75
NC_017317_3 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955467-1955498 32 NC_041894 Propionibacterium phage E6, complete genome 8625-8656 8 0.75
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 NZ_CP019603 Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence 287876-287907 8 0.75
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 NC_014309 Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome 1130740-1130771 8 0.75
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 NZ_CP013381 Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence 35026-35057 8 0.75
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 NZ_CP009547 Burkholderia sp. 2002721687 plasmid pBTU, complete sequence 82833-82864 8 0.75
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 MN393079 Salmonella virus VSiA, complete genome 21630-21661 8 0.75
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 KC139518 Salmonella phage FSL SP-031, complete genome 40161-40192 8 0.75
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 KC139558 Salmonella phage FSL SP-049 tailspike protein, hypothetical proteins, tail length tape measure-related protein, and hypothetical proteins genes, complete cds 2024-2055 8 0.75
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 MH424444 Salmonella virus VSiP, complete genome 21750-21781 8 0.75
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 KC139652 Salmonella phage FSL SP-038 hypothetical proteins, tail length tape measure-related protein, hypothetical proteins, tail fiber protein, hypothetical protein, helicase, hypothetical proteins, DNA polymerase I, Mom, hypothetical protein, endonuclease, and hypothetical proteins genes, complete cds; and hypothetical protein gene, partial cds 6740-6771 8 0.75
NC_017317_3 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956200-1956231 32 NZ_CP044976 Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence 61794-61825 8 0.75
NC_017317_3 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956567-1956598 32 NZ_CP030832 Neorhizobium sp. NCHU2750 plasmid pNCHU2750d, complete sequence 62745-62776 8 0.75
NC_017317_3 3.30|1956690|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956690-1956721 32 NC_007603 Enterobacteria phage RTP, complete genome 24614-24645 8 0.75
NC_017317_3 3.30|1956690|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956690-1956721 32 NC_047810 Escherichia phage vB_EcoS-IME253, complete genome 31966-31997 8 0.75
NC_017317_3 3.30|1956690|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956690-1956721 32 AM156909 Bacteriophage RTP, complete genome 24614-24645 8 0.75
NC_017317_3 3.32|1956812|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956812-1956843 32 CP022016 Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence 356348-356379 8 0.75
NC_017317_3 3.33|1956873|32|NC_017317|CRISPRCasFinder,CRT 1956873-1956904 32 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 792629-792660 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 LT960552 Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite 58548-58579 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 LR596615 Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I 57267-57298 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 NC_042116 Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite 57267-57298 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 KJ081346 Bacillus phage BCP8-2, complete genome 90810-90841 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 MH638312 Bacillus phage Kioshi, complete genome 133476-133507 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 NC_042140 Bacillus virus BM15, complete genome 133808-133839 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 MG602477 Bacillus phage BCP01, complete genome 126508-126539 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 KX495186 Bacillus phage PK16, complete genome 51810-51841 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 MH638309 Bacillus phage Hobo, complete genome 133808-133839 8 0.75
NC_017317_3 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT 1957300-1957331 32 KJ451625 Bacillus phage Bcp1, complete genome 137446-137477 8 0.75
NC_017317_3 3.43|1957483|32|NC_017317|CRISPRCasFinder,CRT 1957483-1957514 32 NZ_CP018310 Vibrio mediterranei strain QT6D1 plasmid unnamed, complete sequence 53241-53272 8 0.75
NC_017317_3 3.43|1957483|32|NC_017317|CRISPRCasFinder,CRT 1957483-1957514 32 NZ_AP017656 Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence 350166-350197 8 0.75
NC_017317_3 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT 1957848-1957879 32 NC_007105 Bacillus cereus E33L plasmid pE33L54, complete sequence 2092-2123 8 0.75
NC_017317_3 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT 1957848-1957879 32 NZ_CP009966 Bacillus cereus E33L plasmid pBCO_2, complete sequence 2661-2692 8 0.75
NC_017317_3 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT 1957848-1957879 32 KY653121 Staphylococcus phage IME1367_02, complete genome 5268-5299 8 0.75
NC_017317_3 3.59|1958459|32|NC_017317|CRISPRCasFinder,CRT 1958459-1958490 32 NC_006945 Bacillus phage GIL16c, complete genome 7802-7833 8 0.75
NC_017317_3 3.59|1958459|32|NC_017317|CRISPRCasFinder,CRT 1958459-1958490 32 AY701338 Bacillus thuringiensis phage GIL16c, complete genome 7802-7833 8 0.75
NC_017317_3 3.65|1958825|32|NC_017317|CRISPRCasFinder,CRT 1958825-1958856 32 MF140401 Arthrobacter phage Caterpillar, complete genome 39515-39546 8 0.75
NC_017317_3 3.65|1958825|32|NC_017317|CRISPRCasFinder,CRT 1958825-1958856 32 MN284902 Arthrobacter phage Makai, complete genome 40495-40526 8 0.75
NC_017317_3 3.80|1958763|33|NC_017317|PILER-CR 1958763-1958795 33 NZ_CP012183 Pseudonocardia sp. EC080610-09 plasmid pBCI2-2, complete sequence 43968-44000 8 0.758
NC_017317_1 1.15|28175|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28175-28206 32 NZ_CP020372 Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence 125462-125493 9 0.719
NC_017317_1 1.23|28663|33|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28663-28695 33 NC_016983 Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence 22694-22726 9 0.727
NC_017317_1 1.23|28663|33|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28663-28695 33 NZ_CP014052 Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence 137185-137217 9 0.727
NC_017317_3 3.4|1955101|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955101-1955132 32 NZ_CP045219 Pantoea dispersa strain BJQ0007 plasmid unnamed3, complete sequence 10318-10349 9 0.719
NC_017317_3 3.6|1955223|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955223-1955254 32 NZ_CP013071 Sphingobium indicum B90A plasmid pSRL1, complete sequence 32351-32382 9 0.719
NC_017317_3 3.7|1955284|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955284-1955315 32 NZ_CP022993 Paraburkholderia aromaticivorans strain BN5 plasmid pBN3, complete sequence 141025-141056 9 0.719
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 NZ_CP012886 Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence 245485-245516 9 0.719
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 NZ_CP050081 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence 258592-258623 9 0.719
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 NZ_CP049731 Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence 255265-255296 9 0.719
NC_017317_3 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955834-1955865 32 NZ_CP053206 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence 255234-255265 9 0.719
NC_017317_3 3.18|1955956|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955956-1955987 32 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 84353-84384 9 0.719
NC_017317_3 3.20|1956078|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956078-1956109 32 NZ_CP029357 Azospirillum sp. CFH 70021 plasmid unnamed2 520315-520346 9 0.719
NC_017317_3 3.21|1956139|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956139-1956170 32 NZ_CP047317 Burkholderia glumae AU6208 plasmid pwszb, complete sequence 23903-23934 9 0.719
NC_017317_3 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956200-1956231 32 NZ_CP033725 Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM1-UF1, complete sequence 17965-17996 9 0.719
NC_017317_3 3.26|1956444|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956444-1956475 32 NZ_CP049157 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence 786259-786290 9 0.719
NC_017317_3 3.26|1956444|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956444-1956475 32 NZ_CP049317 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence 858152-858183 9 0.719
NC_017317_3 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956567-1956598 32 AP020333 Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome 156928-156959 9 0.719
NC_017317_3 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956567-1956598 32 NZ_CP046163 Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence 347667-347698 9 0.719
NC_017317_3 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956567-1956598 32 NZ_CP046066 Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence 531957-531988 9 0.719
NC_017317_3 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956567-1956598 32 NZ_CP045356 Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence 1228851-1228882 9 0.719
NC_017317_3 3.31|1956751|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956751-1956782 32 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 329055-329086 9 0.719
NC_017317_3 3.31|1956751|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956751-1956782 32 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 718165-718196 9 0.719
NC_017317_3 3.37|1957117|32|NC_017317|CRISPRCasFinder,CRT 1957117-1957148 32 KY593455 Yersinia phage fHe-Yen9-01, complete genome 36464-36495 9 0.719
NC_017317_3 3.37|1957117|32|NC_017317|CRISPRCasFinder,CRT 1957117-1957148 32 NC_019909 Yersinia phage phiR1-RT complete genome 36831-36862 9 0.719
NC_017317_3 3.37|1957117|32|NC_017317|CRISPRCasFinder,CRT 1957117-1957148 32 NC_028820 Yersinia phage vB_YenM_TG1, complete genome 33477-33508 9 0.719
NC_017317_3 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT 1957422-1957453 32 NZ_CP024631 Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence 30526-30557 9 0.719
NC_017317_3 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT 1957422-1957453 32 NZ_CP022999 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence 1149524-1149555 9 0.719
NC_017317_3 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT 1957422-1957453 32 NZ_CP020561 Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence 5123-5154 9 0.719
NC_017317_3 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT 1957422-1957453 32 NZ_MN433456 Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence 626-657 9 0.719
NC_017317_3 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT 1957422-1957453 32 NZ_MH734334 Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence 7278-7309 9 0.719
NC_017317_3 3.48|1957787|32|NC_017317|CRISPRCasFinder,CRT 1957787-1957818 32 NZ_CP038019 Eikenella exigua strain PXX plasmid unnamed1, complete sequence 20511-20542 9 0.719
NC_017317_3 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT 1957848-1957879 32 NC_028905 Clostridium phage phiCD111, complete genome 29448-29479 9 0.719
NC_017317_3 3.50|1957909|32|NC_017317|CRISPRCasFinder,CRT 1957909-1957940 32 NZ_CP021285 Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence 21756-21787 9 0.719
NC_017317_3 3.50|1957909|32|NC_017317|CRISPRCasFinder,CRT 1957909-1957940 32 NZ_CP015940 Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence 22607-22638 9 0.719
NC_017317_3 3.50|1957909|32|NC_017317|CRISPRCasFinder,CRT 1957909-1957940 32 NZ_CP021271 Legionella pneumophila strain D-7787 plasmid unnamed, complete sequence 20485-20516 9 0.719
NC_017317_3 3.50|1957909|32|NC_017317|CRISPRCasFinder,CRT 1957909-1957940 32 NC_006366 Legionella pneumophila str. Lens plasmid pLPL, complete sequence 39258-39289 9 0.719
NC_017317_3 3.51|1957970|32|NC_017317|CRISPRCasFinder,CRT 1957970-1958001 32 NZ_CP049911 Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence 43753-43784 9 0.719
NC_017317_3 3.51|1957970|32|NC_017317|CRISPRCasFinder,CRT 1957970-1958001 32 MT661596 Proteus phage 10, complete genome 128123-128154 9 0.719
NC_017317_3 3.52|1958031|32|NC_017317|CRISPRCasFinder,CRT 1958031-1958062 32 KF623293 Vibrio phage SHOU24, complete genome 18955-18986 9 0.719
NC_017317_3 3.55|1958215|32|NC_017317|CRISPRCasFinder,CRT 1958215-1958246 32 NZ_CP054618 Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence 233109-233140 9 0.719
NC_017317_3 3.58|1958398|32|NC_017317|CRISPRCasFinder,CRT 1958398-1958429 32 NZ_CP020429 Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence 148952-148983 9 0.719
NC_017317_3 3.67|1958947|32|NC_017317|CRISPRCasFinder,CRT 1958947-1958978 32 NC_019849 Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence 1120120-1120151 9 0.719
NC_017317_3 3.68|1958030|33|NC_017317|PILER-CR 1958030-1958062 33 KF623293 Vibrio phage SHOU24, complete genome 18955-18987 9 0.727
NC_017317_1 1.6|27626|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 27626-27657 32 NZ_CP015597 Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence 163110-163141 10 0.688
NC_017317_1 1.25|28786|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 28786-28817 32 NZ_CP044976 Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence 308098-308129 10 0.688
NC_017317_3 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955467-1955498 32 MN693954 Marine virus AFVG_250M569, complete genome 27161-27192 10 0.688
NC_017317_3 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955651-1955682 32 KY290956 Aeromonas phage L9-6, complete genome 133817-133848 10 0.688
NC_017317_3 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955651-1955682 32 KY290951 Aeromonas phage 31.2, complete genome 133217-133248 10 0.688
NC_017317_3 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955651-1955682 32 NC_005135 Aeromonas phage 44RR2.8t, complete genome 133458-133489 10 0.688
NC_017317_3 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955651-1955682 32 AY962392 Aeromonas phage 31, complete genome 133222-133253 10 0.688
NC_017317_3 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955651-1955682 32 KY290958 Aeromonas phage SW69-9, complete genome 133353-133384 10 0.688
NC_017317_3 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955651-1955682 32 AY375531 Bacteriophage 44RR2.8t, complete genome 133458-133489 10 0.688
NC_017317_3 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955651-1955682 32 KY290948 Aeromonas phage 44RR2.8t.2, complete genome 133458-133489 10 0.688
NC_017317_3 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955651-1955682 32 KY290957 Aeromonas phage Riv-10, complete genome 134553-134584 10 0.688
NC_017317_3 3.18|1955956|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1955956-1955987 32 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 1089422-1089453 10 0.688
NC_017317_3 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956200-1956231 32 NZ_CP011044 Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid pCI1, complete sequence 30168-30199 10 0.688
NC_017317_3 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956200-1956231 32 NZ_CP021035 Clavibacter michiganensis subsp. insidiosus strain R1-3 plasmid pCI1, complete sequence 30168-30199 10 0.688
NC_017317_3 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956200-1956231 32 NZ_CP021039 Clavibacter michiganensis subsp. insidiosus strain ATCC 10253 plasmid pCI1, complete sequence 30171-30202 10 0.688
NC_017317_3 3.26|1956444|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 1956444-1956475 32 NZ_CP026221 Aeromonas sp. ASNIH4 plasmid pAER-f909, complete sequence 88087-88118 10 0.688
NC_017317_3 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT 1957422-1957453 32 NZ_AP022334 Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence 66908-66939 10 0.688
NC_017317_3 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT 1957422-1957453 32 NZ_CP023739 Methylosinus trichosporium OB3b plasmid pOB3b2, complete sequence 8753-8784 10 0.688
NC_017317_3 3.48|1957787|32|NC_017317|CRISPRCasFinder,CRT 1957787-1957818 32 NC_013518 Sebaldella termitidis ATCC 33386 plasmid pSTERM01, complete sequence 9339-9370 10 0.688
NC_017317_3 3.61|1958581|32|NC_017317|CRISPRCasFinder,CRT 1958581-1958612 32 NZ_CP015203 Rhodococcus sp. 008 plasmid pR8L1, complete sequence 449254-449285 10 0.688
NC_017317_3 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT 1958764-1958795 32 NZ_CP032678 Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence 56390-56421 10 0.688
NC_017317_3 3.71|1958214|33|NC_017317|PILER-CR 1958214-1958246 33 NZ_CP054618 Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence 233108-233140 10 0.697
NC_017317_1 1.7|27687|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT 27687-27718 32 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 490639-490670 11 0.656
NC_017317_3 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT 1958764-1958795 32 MK937603 Gordonia phage Bakery, complete genome 43989-44020 11 0.656
NC_017317_3 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT 1958764-1958795 32 MT639651 Gordonia phage Portcullis, complete genome 42461-42492 11 0.656

1. spacer 3.23|1956261|31|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_006945 (Bacillus phage GIL16c, complete genome) position: , mismatch: 5, identity: 0.839 

gattttcgttaatagcggcgctc-agctaatg	CRISPR spacer
gattttcgttaatagacgcgctctcggtaat-	Protospacer
***************  ******  * ****

2. spacer 3.23|1956261|31|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to AY701338 (Bacillus thuringiensis phage GIL16c, complete genome) position: , mismatch: 5, identity: 0.839 

gattttcgttaatagcggcgctc-agctaatg	CRISPR spacer
gattttcgttaatagacgcgctctcggtaat-	Protospacer
***************  ******  * ****

3. spacer 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 6, identity: 0.812 

gagttgatctattacagcactatttttaaatt	CRISPR spacer
ttgtttatctatttcagcactatttttatagt	Protospacer
  *** ******* ************** * *

4. spacer 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 6, identity: 0.812 

gagttgatctattacagcactatttttaaatt	CRISPR spacer
ttgtttatctatttcagcactatttttatagt	Protospacer
  *** ******* ************** * *

5. spacer 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT matches to JQ809663 (Stenotrophomonas phage Smp131, complete genome) position: , mismatch: 6, identity: 0.812 

--aatcttgagcgcgctgagcaggtcatcgcctc	CRISPR spacer
ccaatcc--agcgcggcgagcaggtcatcgccac	Protospacer
  ****.  ****** .*************** *

6. spacer 1.12|27992|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_015166 (Bacteroides salanitronis DSM 18170 plasmid pBACSA03, complete sequence) position: , mismatch: 7, identity: 0.781 

ggcttttcctgttgtgggatttcttccacgag-	CRISPR spacer
ttgtttccctgttgttggatttcttcc-cgacc	Protospacer
   ***.******** *********** ***

7. spacer 1.28|28969|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017963 (Virgibacillus halodenitrificans strain PDB-F2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781 

actagcaatctagggtataccctttttagaca	CRISPR spacer
attagcaatatagggtatagccttttctgaag	Protospacer
*.******* ********* ******. ** .

8. spacer 1.28|28969|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU306397 (Corynebacterium glutamicum strain DSM 1412 plasmid pBL90, complete sequence) position: , mismatch: 7, identity: 0.781 

actagcaatctagggtataccctttttagaca	CRISPR spacer
actgtcttactagggtataccctattgagaca	Protospacer
***. *   ************** ** *****

9. spacer 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_004953 (Corynebacterium jeikeium plasmid pCJ84, complete sequence) position: , mismatch: 7, identity: 0.781 

atgcttatcaccttcaaggtctgtgaggcgat	CRISPR spacer
acagtcgtcaccttcaaggtgtgtgaggggat	Protospacer
*.. *..************* ******* ***

10. spacer 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 7, identity: 0.781 

-atgcttatcaccttcaaggtctgtgaggcgat	CRISPR spacer
gatg-acatccccttcaaggtcggtgaggctag	Protospacer
 ***  .*** *********** ******* *

11. spacer 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 7, identity: 0.781 

-atgcttatcaccttcaaggtctgtgaggcgat	CRISPR spacer
gatg-acatccccttcaaggtcggtgaggctag	Protospacer
 ***  .*** *********** ******* *

12. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 7, identity: 0.781 

tcggcccgcacggcggctatcgcagccgcatt---	CRISPR spacer
ctggcgcgcacggcggcgatcgca---gcattcag	Protospacer
..*** *********** ******   *****

13. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 7, identity: 0.781 

tcggcccgcacggcggctatcgcagccgcatt---	CRISPR spacer
ctggcgcgcacggcggcgatcgca---gcattcag	Protospacer
..*** *********** ******   *****

14. spacer 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KC292029 (Halovirus HCTV-1, complete genome) position: , mismatch: 7, identity: 0.781 

aggtgcttgtcgatgtgtccaaggaggtcggc	CRISPR spacer
agacgatggtcgaagtgttcaaggaggtcggt	Protospacer
**..* * ***** ****.************.

15. spacer 3.30|1956690|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MN693483 (Marine virus AFVG_25M516, complete genome) position: , mismatch: 7, identity: 0.781 

gattac-gcatagcatcaagatcaaatactggc	CRISPR spacer
-ctcacggaatagcagcaacatcaaatactggt	Protospacer
  *.** * ****** *** ************.

16. spacer 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT matches to NC_034248 (Rhizobium phage RHEph10, complete genome) position: , mismatch: 7, identity: 0.781 

gcctttttcgccgcgtcatcggcgagatagag	CRISPR spacer
atcatgtaggccgcgtcatcggagagatagag	Protospacer
..* * *  ************* *********

17. spacer 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT matches to MN585963 (Gordonia phage Wocket, complete genome) position: , mismatch: 7, identity: 0.781 

gcctttttcgccgcgtcatcggcgagatagag	CRISPR spacer
acctttttcgccgcgtcgtaggcgcccttgag	Protospacer
.****************.* ****   * ***

18. spacer 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP012183 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-2, complete sequence) position: , mismatch: 7, identity: 0.781 

----aatcttgagcgcgctgagcaggtcatcgcctc	CRISPR spacer
tgcgaat----agcgcgctgggcaggtcatcgactt	Protospacer
    ***    *********.*********** **.

19. spacer 3.66|1958886|32|NC_017317|CRISPRCasFinder,CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 7, identity: 0.781 

cccctgggagggcgctaatccatgtgggtggg---	CRISPR spacer
gccatcggagggcgctaatccat---ggtcggcat	Protospacer
 ** * *****************   *** **

20. spacer 1.12|27992|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017309 (Leptolyngbya sp. NIES-3755 plasmid plasmid1 DNA, complete genome) position: , mismatch: 8, identity: 0.75 

ggcttttcctgttgtgggatttcttccacgag	CRISPR spacer
cgcttctcctgttgtgggattgcttaccagca	Protospacer
 ****.*************** *** *  * .

21. spacer 1.15|28175|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 8, identity: 0.75 

agagtgcgaaatgatccaggagcctgcgataa	CRISPR spacer
gcggcgtgaaatgatccagaagcccgcgatag	Protospacer
. .*.*.************.****.******.

22. spacer 1.22|28602|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 8, identity: 0.75 

tcgcaagattcaacgcttgtgtcggcaacctc	CRISPR spacer
gcacctgattcaatgcttgtgtctgcaacttt	Protospacer
 *.*  *******.********* *****.*.

23. spacer 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MT670422 (Pseudomonas phage phiPsa397, complete genome) position: , mismatch: 8, identity: 0.75 

cctgcgtttaccttgagtgtgtagaactttcc	CRISPR spacer
aattcgtttaccttgagtgtgaagagcttcgt	Protospacer
  * ***************** ***.***. .

24. spacer 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_023601 (Pseudomonas phage phiPsa374, complete genome) position: , mismatch: 8, identity: 0.75 

cctgcgtttaccttgagtgtgtagaactttcc	CRISPR spacer
aattcgtttaccttgagtgtgaagagcttcgt	Protospacer
  * ***************** ***.***. .

25. spacer 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MT670418 (Pseudomonas phage phiPsa300, complete genome) position: , mismatch: 8, identity: 0.75 

cctgcgtttaccttgagtgtgtagaactttcc	CRISPR spacer
aattcgtttaccttgagtgtgaagagcttcgt	Protospacer
  * ***************** ***.***. .

26. spacer 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MT670420 (Pseudomonas phage phiPsa347, complete genome) position: , mismatch: 8, identity: 0.75 

cctgcgtttaccttgagtgtgtagaactttcc	CRISPR spacer
aattcgtttaccttgagtgtgaagagcttcgt	Protospacer
  * ***************** ***.***. .

27. spacer 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MT670421 (Pseudomonas phage phiPsa381, complete genome) position: , mismatch: 8, identity: 0.75 

cctgcgtttaccttgagtgtgtagaactttcc	CRISPR spacer
aattcgtttaccttgagtgtgaagagcttcgt	Protospacer
  * ***************** ***.***. .

28. spacer 1.27|28908|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MT670417 (Pseudomonas phage phiPsa267, complete genome) position: , mismatch: 8, identity: 0.75 

cctgcgtttaccttgagtgtgtagaactttcc	CRISPR spacer
aattcgtttaccttgagtgtgaagagcttcgt	Protospacer
  * ***************** ***.***. .

29. spacer 3.1|1954918|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MT773556 (Myoviridae sp. isolate BML_4 genomic sequence) position: , mismatch: 8, identity: 0.75 

gaaaggcgaaaccgccttctccaagggtgaga	CRISPR spacer
aaaaggcgaaaaccccttctccaaggaaataa	Protospacer
.********** * ************. . .*

30. spacer 3.4|1955101|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_009779 (Cronobacter sakazakii ATCC BAA-894 plasmid pESA2, complete sequence) position: , mismatch: 8, identity: 0.75 

-aatggcttaaagaatgtgaacggggtattacg	CRISPR spacer
ctacagc-taaagattgtgaacggtgtattatt	Protospacer
  *..** ****** ********* ******.

31. spacer 3.8|1955345|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.75 

cccacactcgctaaggacccctgtgaccgcat	CRISPR spacer
tctagcctcgctaaggacccatgtcaccgctg	Protospacer
.*.*  ************** *** *****

32. spacer 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_049431 (Vibrio phage 1.097.O._10N.286.49.B3, partial genome) position: , mismatch: 8, identity: 0.75 

atgcttatcaccttcaaggtctgtgaggcgat	CRISPR spacer
acccttatcacctttaaggtctgtgagtacgc	Protospacer
*. ***********.************   ..

33. spacer 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 8, identity: 0.75 

-atgcttatcaccttcaaggtctgtgaggcgat	CRISPR spacer
gatg-acatccccttcaaggtcggtgaggcatc	Protospacer
 ***  .*** *********** *******. .

34. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 8, identity: 0.75 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
tcgtcccgcccggcggctatcgcatgatcgtc	Protospacer
*** ***** **************    *.*.

35. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 8, identity: 0.75 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
tcggccagcacggcggccatcgccgggcgatc	Protospacer
****** **********.***** *    **.

36. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 8, identity: 0.75 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
gcgcgtcgcacggcggctgtcgccgccgcgct	Protospacer
 **  .************.**** *****..*

37. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 8, identity: 0.75 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
gcgcgtcgcacggcggctgtcgccgccgcgct	Protospacer
 **  .************.**** *****..*

38. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MN393079 (Salmonella virus VSiA, complete genome) position: , mismatch: 8, identity: 0.75 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
ttgcgccgcatggcggctatcgctgccgaagg	Protospacer
*.*  *****.************ **** *

39. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KC139518 (Salmonella phage FSL SP-031, complete genome) position: , mismatch: 8, identity: 0.75 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
ttgcgccgcatggcggctatcgctgccgaagg	Protospacer
*.*  *****.************ **** *

40. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KC139558 (Salmonella phage FSL SP-049 tailspike protein, hypothetical proteins, tail length tape measure-related protein, and hypothetical proteins genes, complete cds) position: , mismatch: 8, identity: 0.75 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
ttgcgccgcatggcggctatcgctgccgaagg	Protospacer
*.*  *****.************ **** *

41. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MH424444 (Salmonella virus VSiP, complete genome) position: , mismatch: 8, identity: 0.75 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
ttgcgccgcatggcggctatcgctgccgaagg	Protospacer
*.*  *****.************ **** *

42. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KC139652 (Salmonella phage FSL SP-038 hypothetical proteins, tail length tape measure-related protein, hypothetical proteins, tail fiber protein, hypothetical protein, helicase, hypothetical proteins, DNA polymerase I, Mom, hypothetical protein, endonuclease, and hypothetical proteins genes, complete cds; and hypothetical protein gene, partial cds) position: , mismatch: 8, identity: 0.75 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
ttgcgccgcatggcggctatcgctgccgaagg	Protospacer
*.*  *****.************ **** *

43. spacer 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044976 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence) position: , mismatch: 8, identity: 0.75 

aggtgcttgtcgatgtgtccaaggaggtcggc	CRISPR spacer
aggtgcttgtcgatgtgagcaagtcgattctc	Protospacer
*****************  ****  *.*.  *

44. spacer 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030832 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750d, complete sequence) position: , mismatch: 8, identity: 0.75 

cgatcttccagggctgaatgacatcatttcca	CRISPR spacer
tgagcagtgagggctgaaagccatcatttcca	Protospacer
.** *  . ********* * ***********

45. spacer 3.30|1956690|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_007603 (Enterobacteria phage RTP, complete genome) position: , mismatch: 8, identity: 0.75 

gattacgcatagcatcaagatcaaatactggc	CRISPR spacer
acctgcgagtagcctcaagctcaaatactggc	Protospacer
. .*.** .**** ***** ************

46. spacer 3.30|1956690|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_047810 (Escherichia phage vB_EcoS-IME253, complete genome) position: , mismatch: 8, identity: 0.75 

gattacgcatagcatcaagatcaaatactggc	CRISPR spacer
acctgcgagtagcctcaagctcaaatactggc	Protospacer
. .*.** .**** ***** ************

47. spacer 3.30|1956690|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to AM156909 (Bacteriophage RTP, complete genome) position: , mismatch: 8, identity: 0.75 

gattacgcatagcatcaagatcaaatactggc	CRISPR spacer
acctgcgagtagcctcaagctcaaatactggc	Protospacer
. .*.** .**** ***** ************

48. spacer 3.32|1956812|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75 

cgcttcacctggctggccggaatgaccccatc	CRISPR spacer
cgcttcacctcgcttgccggaatggatgcaaa	Protospacer
********** *** *********. . **

49. spacer 3.33|1956873|32|NC_017317|CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 8, identity: 0.75 

ggcttgagcaatttcgcgtcggtggccatgcc	CRISPR spacer
cggatcgtcaatttcgcgacggtggccacgcc	Protospacer
 *  * . ********** *********.***

50. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
atcctgtttcttcattttcactttcagtatcg	Protospacer
***** ****** *************  ...

51. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
atcctgtttcttcattttcactttcagtatcg	Protospacer
***** ****** *************  ...

52. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
atcctgtttcttcattttcactttcagtatcg	Protospacer
***** ****** *************  ...

53. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to KJ081346 (Bacillus phage BCP8-2, complete genome) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
ctcctttttcttaatttgcacattcattaatg	Protospacer
 **************** *** ****. . *

54. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to MH638312 (Bacillus phage Kioshi, complete genome) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
ttcctttttcttaatttgcacattcattaatg	Protospacer
 **************** *** ****. . *

55. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to NC_042140 (Bacillus virus BM15, complete genome) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
ttcctttttcttaatttgcacattcattaatg	Protospacer
 **************** *** ****. . *

56. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
ctcctttttcttaatttgcacattcattaatg	Protospacer
 **************** *** ****. . *

57. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
ctcctttttcttaatttgcacattcattaatg	Protospacer
 **************** *** ****. . *

58. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to MH638309 (Bacillus phage Hobo, complete genome) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
ttcctttttcttaatttgcacattcattaatg	Protospacer
 **************** *** ****. . *

59. spacer 3.40|1957300|32|NC_017317|CRISPRCasFinder,CRT matches to KJ451625 (Bacillus phage Bcp1, complete genome) position: , mismatch: 8, identity: 0.75 

atcctttttcttaattttcactttcacggctt	CRISPR spacer
ttcctttttcttaatttgcacattcattaatg	Protospacer
 **************** *** ****. . *

60. spacer 3.43|1957483|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP018310 (Vibrio mediterranei strain QT6D1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75 

aaatcaccatcagcgcaaaaaccacccgctat	CRISPR spacer
tgttcaccatcagcgcaaacaccaccggtctt	Protospacer
 . **************** ****** *.. *

61. spacer 3.43|1957483|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 8, identity: 0.75 

aaatcaccatcagcgcaaaaaccacccgctat	CRISPR spacer
acttcacgatcagcgccaaaaccaccgacggt	Protospacer
*  **** ******** ********* .* .*

62. spacer 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT matches to NC_007105 (Bacillus cereus E33L plasmid pE33L54, complete sequence) position: , mismatch: 8, identity: 0.75 

gagttgatctattacagcactatttttaaatt	CRISPR spacer
tttttcttgtattacagcattatttttgaatt	Protospacer
   **  * **********.*******.****

63. spacer 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP009966 (Bacillus cereus E33L plasmid pBCO_2, complete sequence) position: , mismatch: 8, identity: 0.75 

gagttgatctattacagcactatttttaaatt	CRISPR spacer
tttttcttgtattacagcattatttttgaatt	Protospacer
   **  * **********.*******.****

64. spacer 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT matches to KY653121 (Staphylococcus phage IME1367_02, complete genome) position: , mismatch: 8, identity: 0.75 

gagttgatctattacagcactatttttaaatt	CRISPR spacer
gtctaggattaatacagcattatttttaaatt	Protospacer
*  * *. .** *******.************

65. spacer 3.59|1958459|32|NC_017317|CRISPRCasFinder,CRT matches to NC_006945 (Bacillus phage GIL16c, complete genome) position: , mismatch: 8, identity: 0.75 

gattttcgttaatagcggcgctcaattgatgg--	CRISPR spacer
gattttcgttaatagacgcgctc--tcggtaatg	Protospacer
***************  ******  *.*.*..

66. spacer 3.59|1958459|32|NC_017317|CRISPRCasFinder,CRT matches to AY701338 (Bacillus thuringiensis phage GIL16c, complete genome) position: , mismatch: 8, identity: 0.75 

gattttcgttaatagcggcgctcaattgatgg--	CRISPR spacer
gattttcgttaatagacgcgctc--tcggtaatg	Protospacer
***************  ******  *.*.*..

67. spacer 3.65|1958825|32|NC_017317|CRISPRCasFinder,CRT matches to MF140401 (Arthrobacter phage Caterpillar, complete genome) position: , mismatch: 8, identity: 0.75 

aactgggacgttattccacttgga-gcacgccg	CRISPR spacer
cactgggacgttgttgcacttggacagtcgtc-	Protospacer
 ***********.** ******** .  **.*

68. spacer 3.65|1958825|32|NC_017317|CRISPRCasFinder,CRT matches to MN284902 (Arthrobacter phage Makai, complete genome) position: , mismatch: 8, identity: 0.75 

aactgggacgttattccacttggagcacgccg--	CRISPR spacer
cactgggacgttgttgcacttgga--tagtcgac	Protospacer
 ***********.** ********    *.**

69. spacer 3.80|1958763|33|NC_017317|PILER-CR matches to NZ_CP012183 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-2, complete sequence) position: , mismatch: 8, identity: 0.758 

caatcttg-----agcgcgctgagcaggtcatcgcctc	CRISPR spacer
-----ttgcgaatagcgcgctgggcaggtcatcgactt	Protospacer
     ***     *********.*********** **.

70. spacer 1.15|28175|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 9, identity: 0.719 

agagtgcgaaatgatccaggagcctgcgataa	CRISPR spacer
cccggcccaactgatccaggagcttgcgatac	Protospacer
   *  * ** ************.*******

71. spacer 1.23|28663|33|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_016983 (Photobacterium damselae subsp. damselae plasmid pAQU1, complete sequence) position: , mismatch: 9, identity: 0.727 

gaacttttcgctttcatctcgcacatgatccgg	CRISPR spacer
ggtgattacgctttcatctcgcacatgattgaa	Protospacer
*.   ** *********************. ..

72. spacer 1.23|28663|33|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014052 (Vibrio alginolyticus strain FDAARGOS_108 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727 

gaacttttcgctttcatctcgcacatgatccgg	CRISPR spacer
ggtgattacgcgttcatctcgcacatgattgag	Protospacer
*.   ** *** *****************. .*

73. spacer 3.4|1955101|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045219 (Pantoea dispersa strain BJQ0007 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719 

----aatggcttaaagaatgtgaacggggtattacg	CRISPR spacer
ctacaa----ctaaagattgtgaacggtgtattatt	Protospacer
    **    .****** ********* ******.

74. spacer 3.6|1955223|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013071 (Sphingobium indicum B90A plasmid pSRL1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggagttattgaggtgcatcatgaatggaactc	CRISPR spacer
ccatttattgaggttcctcatgaatggcgccg	Protospacer
  * ********** * ********** .*.

75. spacer 3.7|1955284|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022993 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN3, complete sequence) position: , mismatch: 9, identity: 0.719 

accctcgccgaccgaaaaggattcgaccgctg	CRISPR spacer
tgatccgccgaccgaaaagaatccgaccgtgg	Protospacer
   ..**************.**.******. *

76. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012886 (Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
agcacccgcacggcggcgatcgcagcggccac	Protospacer
   .************* ******** **  .

77. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 9, identity: 0.719 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
tcggcccgctcggcggcgatcgccaggtcgtg	Protospacer
********* ******* ***** .   *.*

78. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 9, identity: 0.719 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
tcggcccgctcggcggcgatcgccagatcgtg	Protospacer
********* ******* ***** .   *.*

79. spacer 3.16|1955834|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 9, identity: 0.719 

tcggcccgcacggcggctatcgcagccgcatt	CRISPR spacer
tcggcccgctcggcggcgatcgccaggtcgtg	Protospacer
********* ******* ***** .   *.*

80. spacer 3.18|1955956|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719 

atccacggccttgatcgaaacatccgcacgaa	CRISPR spacer
gtgttcggccttgatcgaaccgtccgcagcca	Protospacer
.* . ************** *.******   *

81. spacer 3.20|1956078|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 9, identity: 0.719 

cgcattcgtcacagcgtcgatgccacggaagt	CRISPR spacer
cgcatgcgtcaccgcgtcgatgccgcccgccg	Protospacer
***** ****** ***********.*  .

82. spacer 3.21|1956139|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047317 (Burkholderia glumae AU6208 plasmid pwszb, complete sequence) position: , mismatch: 9, identity: 0.719 

gtgaggcaaatcacatatttttagattgtgaa	CRISPR spacer
gactgatccatcccatatttttagaatgtgaa	Protospacer
*   *..  *** ************ ******

83. spacer 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033725 (Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM1-UF1, complete sequence) position: , mismatch: 9, identity: 0.719 

aggtgcttgtcgatgtgtccaaggaggtcggc	CRISPR spacer
gtgaacgtgtcgatgtggccgaggaggtcgcg	Protospacer
. * .* ********** **.*********

84. spacer 3.26|1956444|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.719 

gatgtaaagccgcagataagccagcggaaaag	CRISPR spacer
ccggtaaagccgcagattatccagcgtgataa	Protospacer
   ************** * ****** .* *.

85. spacer 3.26|1956444|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.719 

gatgtaaagccgcagataagccagcggaaaag	CRISPR spacer
ccggtaaagccgcagattatccagcgtgataa	Protospacer
   ************** * ****** .* *.

86. spacer 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to AP020333 (Salmonella enterica SESen3709 plasmid pSESen3709_1 DNA, complete genome) position: , mismatch: 9, identity: 0.719 

cgatcttccagggctgaatgacatcatttcca	CRISPR spacer
tgcacttccagggctgaatgccaacattatgt	Protospacer
.*  **************** ** **** .

87. spacer 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 9, identity: 0.719 

cgatcttccagggctgaatgacatcatttcca	CRISPR spacer
ttttcttccagggctggatgacagcaggtaaa	Protospacer
.  *************.****** **  *  *

88. spacer 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 9, identity: 0.719 

cgatcttccagggctgaatgacatcatttcca	CRISPR spacer
ttttcttccagggctggatgacagcaggtaaa	Protospacer
.  *************.****** **  *  *

89. spacer 3.28|1956567|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 9, identity: 0.719 

cgatcttccagggctgaatgacatcatttcca	CRISPR spacer
ttttcttccagggctggatgacagcaggtaaa	Protospacer
.  *************.****** **  *  *

90. spacer 3.31|1956751|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719 

cgaaacatccgatgcgctggccttctcaaaaa	CRISPR spacer
gccaacatccgatccgccggccttctcggtca	Protospacer
   ********** ***.*********..  *

91. spacer 3.31|1956751|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 9, identity: 0.719 

cgaaacatccgatgcgctggccttctcaaaaa	CRISPR spacer
gccaacatccgatccgccggccttctcggtca	Protospacer
   ********** ***.*********..  *

92. spacer 3.37|1957117|32|NC_017317|CRISPRCasFinder,CRT matches to KY593455 (Yersinia phage fHe-Yen9-01, complete genome) position: , mismatch: 9, identity: 0.719 

ctaaagattcatatctttcaaagcttcccacg	CRISPR spacer
tttaatattcttatctttcaaagcttcgatta	Protospacer
.* ** **** ****************   ..

93. spacer 3.37|1957117|32|NC_017317|CRISPRCasFinder,CRT matches to NC_019909 (Yersinia phage phiR1-RT complete genome) position: , mismatch: 9, identity: 0.719 

ctaaagattcatatctttcaaagcttcccacg	CRISPR spacer
tttaatattcttatctttcaaagcttcgatta	Protospacer
.* ** **** ****************   ..

94. spacer 3.37|1957117|32|NC_017317|CRISPRCasFinder,CRT matches to NC_028820 (Yersinia phage vB_YenM_TG1, complete genome) position: , mismatch: 9, identity: 0.719 

ctaaagattcatatctttcaaagcttcccacg	CRISPR spacer
tttaatattcttatctttcaaagcttcgatta	Protospacer
.* ** **** ****************   ..

95. spacer 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP024631 (Pseudomonas aeruginosa strain PA59 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

gcctttttcgccgcgtcatcggcgagatagag	CRISPR spacer
ccagataccgccgcgtcatcgcagagatagat	Protospacer
 *   * .*************  ********

96. spacer 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 9, identity: 0.719 

gcctttttcgccgcgtcatcggcgagatagag	CRISPR spacer
agacctttcgccgcgacaccggcgagatggtg	Protospacer
.  ..********** **.*********.* *

97. spacer 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP020561 (Pseudomonas aeruginosa strain CR1 plasmid pCR1, complete sequence) position: , mismatch: 9, identity: 0.719 

gcctttttcgccgcgtcatcggcgagatagag	CRISPR spacer
ccagataccgccgcgtcatcgcagagatagat	Protospacer
 *   * .*************  ********

98. spacer 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_MN433456 (Pseudomonas aeruginosa strain PAB546 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719 

gcctttttcgccgcgtcatcggcgagatagag	CRISPR spacer
ccagataccgccgcgtcatcgcagagatagat	Protospacer
 *   * .*************  ********

99. spacer 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_MH734334 (Pseudomonas aeruginosa strain 1011 plasmid p1011-KPC2, complete sequence) position: , mismatch: 9, identity: 0.719 

gcctttttcgccgcgtcatcggcgagatagag	CRISPR spacer
ccagataccgccgcgtcatcgcagagatagat	Protospacer
 *   * .*************  ********

100. spacer 3.48|1957787|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP038019 (Eikenella exigua strain PXX plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

tttaaccacgctttttgccaaaaaccctgcct	CRISPR spacer
gccaaccacgctttttgccgaaaacccgatgc	Protospacer
 ..****************.******* .. .

101. spacer 3.49|1957848|32|NC_017317|CRISPRCasFinder,CRT matches to NC_028905 (Clostridium phage phiCD111, complete genome) position: , mismatch: 9, identity: 0.719 

gagttgatctattacagcactatttttaaatt	CRISPR spacer
tttttataatattacagcaatatttttatatt	Protospacer
   **.   ********** ******** ***

102. spacer 3.50|1957909|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719 

ggattgccattgcctacattgtggaatatact	CRISPR spacer
ctgttgccaatgcctacattttggaagctaac	Protospacer
  .****** ********** *****  ** .

103. spacer 3.50|1957909|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP015940 (Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggattgccattgcctacattgtggaatatact	CRISPR spacer
ctgttgccaatgcctacattttggaagctaac	Protospacer
  .****** ********** *****  ** .

104. spacer 3.50|1957909|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP021271 (Legionella pneumophila strain D-7787 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719 

ggattgccattgcctacattgtggaatatact	CRISPR spacer
ctgttgccaatgcctacattttggaagctaac	Protospacer
  .****** ********** *****  ** .

105. spacer 3.50|1957909|32|NC_017317|CRISPRCasFinder,CRT matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 9, identity: 0.719 

ggattgccattgcctacattgtggaatatact	CRISPR spacer
ctgttgccaatgcctacattttggaagctaac	Protospacer
  .****** ********** *****  ** .

106. spacer 3.51|1957970|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP049911 (Diaphorobacter sp. HDW4A plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

ggttttcatcgtctttaccttccccctgcggt	CRISPR spacer
cgctttcatcgtctttactttcgcccgcatga	Protospacer
 *.***************.*** ***    *

107. spacer 3.51|1957970|32|NC_017317|CRISPRCasFinder,CRT matches to MT661596 (Proteus phage 10, complete genome) position: , mismatch: 9, identity: 0.719 

ggttttcatcgtctttaccttccccctgcggt	CRISPR spacer
tgttttcatcgtctttgtcttcccacaagcga	Protospacer
 ***************..****** * .  *

108. spacer 3.52|1958031|32|NC_017317|CRISPRCasFinder,CRT matches to KF623293 (Vibrio phage SHOU24, complete genome) position: , mismatch: 9, identity: 0.719 

caaactcatgcccgtgatcgtgccccgtaaga	CRISPR spacer
caaactcatagccgtgatcgtgcaggtcagta	Protospacer
*********. ************    .*. *

109. spacer 3.55|1958215|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719 

atggaaaccagcaccgtggacgcgtctgatat	CRISPR spacer
ccggaaaccatcaccgtggacgtgtccgccga	Protospacer
 .******** ***********.***.* ..

110. spacer 3.58|1958398|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

gcgccaacaaaaatcggggcaagtctcgcaac	CRISPR spacer
gagacaacaaaaaacgaggcaagtctcaatgg	Protospacer
* * ********* **.**********.  .

111. spacer 3.67|1958947|32|NC_017317|CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 9, identity: 0.719 

cgggggttcatctatcgagtcccagagggcct	CRISPR spacer
ttgtcgatcatctatcgaatcccagacggcta	Protospacer
. *  * ***********.******* ***.

112. spacer 3.68|1958030|33|NC_017317|PILER-CR matches to KF623293 (Vibrio phage SHOU24, complete genome) position: , mismatch: 9, identity: 0.727 

ccaaactcatgcccgtgatcgtgccccgtaaga	CRISPR spacer
ccaaactcatagccgtgatcgtgcaggtcagta	Protospacer
**********. ************    .*. *

113. spacer 1.6|27626|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015597 (Mycobacterium sp. YC-RL4 plasmid pMYC1, complete sequence) position: , mismatch: 10, identity: 0.688 

caatgcagcgagcggagtccaccgataacgat	CRISPR spacer
tgatgcagcgcgcgcagtccaccgaaagttcc	Protospacer
..******** *** ********** *..  .

114. spacer 1.25|28786|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044976 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence) position: , mismatch: 10, identity: 0.688 

tcgcttgaccaccgcgtgggtgtgaccagctg	CRISPR spacer
gatggtgactaccgcgtgggtgtggccatcgt	Protospacer
     ****.**************.*** *

115. spacer 3.10|1955467|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to MN693954 (Marine virus AFVG_250M569, complete genome) position: , mismatch: 10, identity: 0.688 

atgcttatcaccttcaaggtctgtgaggcgat	CRISPR spacer
ttgcttatgactttcaaggtctgtagacttaa	Protospacer
 ******* **.************... . *

116. spacer 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KY290956 (Aeromonas phage L9-6, complete genome) position: , mismatch: 10, identity: 0.688 

taagagatttggttgcttactgtgaatcaaaa	CRISPR spacer
aactagttttggttgcttactgtaaattcttt	Protospacer
 *  ** ****************.***.

117. spacer 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KY290951 (Aeromonas phage 31.2, complete genome) position: , mismatch: 10, identity: 0.688 

taagagatttggttgcttactgtgaatcaaaa	CRISPR spacer
aactagttttggttgcttactgtaaattcttt	Protospacer
 *  ** ****************.***.

118. spacer 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NC_005135 (Aeromonas phage 44RR2.8t, complete genome) position: , mismatch: 10, identity: 0.688 

taagagatttggttgcttactgtgaatcaaaa	CRISPR spacer
aactagttttggttgcttactgtaaattcttt	Protospacer
 *  ** ****************.***.

119. spacer 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to AY962392 (Aeromonas phage 31, complete genome) position: , mismatch: 10, identity: 0.688 

taagagatttggttgcttactgtgaatcaaaa	CRISPR spacer
aactagttttggttgcttactgtaaattcttt	Protospacer
 *  ** ****************.***.

120. spacer 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KY290958 (Aeromonas phage SW69-9, complete genome) position: , mismatch: 10, identity: 0.688 

taagagatttggttgcttactgtgaatcaaaa	CRISPR spacer
aactagttttggttgcttactgtaaattcttt	Protospacer
 *  ** ****************.***.

121. spacer 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to AY375531 (Bacteriophage 44RR2.8t, complete genome) position: , mismatch: 10, identity: 0.688 

taagagatttggttgcttactgtgaatcaaaa	CRISPR spacer
aactagttttggttgcttactgtaaattcttt	Protospacer
 *  ** ****************.***.

122. spacer 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KY290948 (Aeromonas phage 44RR2.8t.2, complete genome) position: , mismatch: 10, identity: 0.688 

taagagatttggttgcttactgtgaatcaaaa	CRISPR spacer
aactagttttggttgcttactgtaaattcttt	Protospacer
 *  ** ****************.***.

123. spacer 3.13|1955651|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to KY290957 (Aeromonas phage Riv-10, complete genome) position: , mismatch: 10, identity: 0.688 

taagagatttggttgcttactgtgaatcaaaa	CRISPR spacer
aactagttttggttgcttactgtaaattcttt	Protospacer
 *  ** ****************.***.

124. spacer 3.18|1955956|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688 

atccacggccttgatcgaaacatccgcacgaa	CRISPR spacer
gatcaaggcgttgatcgaaacatccgctgccc	Protospacer
. .** *** *****************

125. spacer 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011044 (Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid pCI1, complete sequence) position: , mismatch: 10, identity: 0.688 

aggtgcttgtcgatgtgtccaaggaggtcggc	CRISPR spacer
gtgaaggtgtcgatgtggccgaggaggtcgcg	Protospacer
. * .  ********** **.*********

126. spacer 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021035 (Clavibacter michiganensis subsp. insidiosus strain R1-3 plasmid pCI1, complete sequence) position: , mismatch: 10, identity: 0.688 

aggtgcttgtcgatgtgtccaaggaggtcggc	CRISPR spacer
gtgaaggtgtcgatgtggccgaggaggtcgcg	Protospacer
. * .  ********** **.*********

127. spacer 3.22|1956200|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021039 (Clavibacter michiganensis subsp. insidiosus strain ATCC 10253 plasmid pCI1, complete sequence) position: , mismatch: 10, identity: 0.688 

aggtgcttgtcgatgtgtccaaggaggtcggc	CRISPR spacer
gtgaaggtgtcgatgtggccgaggaggtcgcg	Protospacer
. * .  ********** **.*********

128. spacer 3.26|1956444|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026221 (Aeromonas sp. ASNIH4 plasmid pAER-f909, complete sequence) position: , mismatch: 10, identity: 0.688 

gatgtaaagccgcagataagccagcggaaaag	CRISPR spacer
aaaaagtagcagcagagaagccagcggaaagc	Protospacer
.* . . *** ***** *************.

129. spacer 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_AP022334 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence) position: , mismatch: 10, identity: 0.688 

gcctttttcgccgcgtcatcggcgagatagag	CRISPR spacer
tagcgcatcgccgcgtcattggcgcgatagat	Protospacer
   . . ************.**** ******

130. spacer 3.42|1957422|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP023739 (Methylosinus trichosporium OB3b plasmid pOB3b2, complete sequence) position: , mismatch: 10, identity: 0.688 

gcctttttcgccgcgtcatcggcgagatagag	CRISPR spacer
tagcgcatcgccgcgtcattggcgcgatagat	Protospacer
   . . ************.**** ******

131. spacer 3.48|1957787|32|NC_017317|CRISPRCasFinder,CRT matches to NC_013518 (Sebaldella termitidis ATCC 33386 plasmid pSTERM01, complete sequence) position: , mismatch: 10, identity: 0.688 

tttaaccacgctttttgccaaaaaccctgcct	CRISPR spacer
gttaaccaccctttctgccaaaaagttttttc	Protospacer
 ******** ****.********* ..* ...

132. spacer 3.61|1958581|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP015203 (Rhodococcus sp. 008 plasmid pR8L1, complete sequence) position: , mismatch: 10, identity: 0.688 

gtggagatcgatgcaagggctgaagcgatggg	CRISPR spacer
cctcctatcaatgcaagggctgcagcgatcgc	Protospacer
 .    ***.************ ****** *

133. spacer 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 10, identity: 0.688 

aatcttgagcgcgctgagcaggtcatcgcctc	CRISPR spacer
cagcttgatcgcgctgagcagctcattcttca	Protospacer
 * ***** ************ ****. ...

134. spacer 3.71|1958214|33|NC_017317|PILER-CR matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697 

catggaaaccagcaccgtggacgcgtctgatat	CRISPR spacer
tccggaaaccatcaccgtggacgtgtccgccga	Protospacer
. .******** ***********.***.* ..

135. spacer 1.7|27687|32|NC_017317|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 11, identity: 0.656 

gtgaagtgctcgatggatctggacatggcgta	CRISPR spacer
tccgtcgcctcgatgggtcgggacatggcgtt	Protospacer
 . .    ********.** ***********

136. spacer 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT matches to MK937603 (Gordonia phage Bakery, complete genome) position: , mismatch: 11, identity: 0.656 

aatcttgagcgcgctgagcaggtcatcgcctc	CRISPR spacer
gtcggcgagcgcgctgagcaggttgtcgcggt	Protospacer
. .  .*****************..****  .

137. spacer 3.64|1958764|32|NC_017317|CRISPRCasFinder,CRT matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 11, identity: 0.656 

aatcttgagcgcgctgagcaggtcatcgcctc	CRISPR spacer
gtcggcgagcgcgctgagcaggttgtcgcggt	Protospacer
. .  .*****************..****  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1278958 : 1312591 36 Corynebacterium_phage(68.0%) holin,protease,tail NA
DBSCAN-SWA_2 1315772 : 1324053 10 Corynebacterium_phage(25.0%) integrase attL 1313446:1313460|attR 1326612:1326626
DBSCAN-SWA_3 1877240 : 1949193 58 Tupanvirus(27.27%) bacteriocin,protease NA
DBSCAN-SWA_4 2095455 : 2103919 11 Pandoravirus(33.33%) holin NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage