CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015683	Corynebacterium ulcerans BR-AD22, complete sequence	4 crisprs	cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,cas2,csb3,csb2gr5,csb1gr7,DEDDh,csa3,WYL,DinG	10	31	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015683_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015683_1

26730-29078

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GGAACTACCTCCGCATACGCGGAGAAAAG	CRISPRCasFinder
GGAACTACCTCCGCGTACGCGGAGAAAAG	CRT
GGAACTACCTCCGCGTACGCGGAGAAAAG	PILER-CR
GGAACTACCTCCGCGTACGCGGAGAAAAG	PILER-CR

38 spacers

cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NC_015683_1

>merge|NC_015683|1|26730-29078|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GGAACTACCTCCGCATACGCGGAGAAAAGTTATCGCGCAGATTGTGGAAGAAGCCGAGAAGGGAACTACCTCCGCATACGCGGAGAAAAGGGATGCACCTTTGGTTCATTTTCATGCTTTGCGGAACTACCTCCGCATACGCGGAGAAAAGTCATTTTTGGCTTTGATGAAGCTGGCGCGCTCGGAACTACCTCCGCGTACGCGGAGAAAAGCCACGTCCCGCCTCAACCTCAGCGACAACATTGGAACTACCTCCGCGTACGCGGAGAAAAGGCACACCATTCTCAGCGATCATATCAACCGCAGGAACTACCTCCGCGTACGCGGAGAAAAGCACCCGGCCATCTGAGCCGGGGCGCTAATCTCGGAACTACCTCCGCGTACGCGGAGAAAAGTTCGTTTGTCACGACGTTGCGGACAATGATTGGGAACTACCTCCGCGTACGCGGAGAAAAGGCTTTGTCGTAGGGGGCGCTGATTGCAAGGAGGGAACTACCTCCGCGTACGCGGAGAAAAGAATGACCTACCATAAAACCATACAAAAACCTAGGAACTACCTCCGCGTACGCGGAGAAAAGAACGCCGTGCCCTTTTCAATCTGATCACGCAGGGAACTACCTCCGCGTACGCGGAGAAAAGTGCCAGACGGAACGTATCTTATGAGCACCTTTGGAACTACCTCCGCGTACGCGGAGAAAAGAACGCGCCATCATGGGCGGCACCCCAAAGGGCGGAACTACCTCCGCGTACGCGGAGAAAAGGCTAGGGTCTAAACGTTACTACTTTTAAGGGTGGAACTACCTCCGCGTACGCGGAGAAAAGCGGCTGGTGATGAGGACGAAGACGCTGAGGAAGGAACTACCTCCGCGTACGCGGAGAAAAGGCAAGTAACTGCACCTGGCGTGTGTTTCCCCCGGAACTACCTCCGCGTACGCGGAGAAAAGGACTTCCACCCCTCAAAAACCAAACGCTCATGGGAACTACCTCCGCGTACGCGGAGAAAAGAGCCCGCCACCGAGAAGAAAATTCAGCAGCGGGGAACTACCTCCGCGTACGCGGAGAAAAGCCCGCGAAGCTTCTGCCACAAAGCCTCGTCGTGGAACTACCTCCGCGTACGCGGAGAAAAGATTACATGAATTGGGTTCAAGATATGGAGCGCGGAACTACCTCCGCGTACGCGGAGAAAAGGTAAGTGAATACCCTGAGCTATTAAGAGCAGTGGGAACTACCTCCGCGTACGCGGAGAAAAGTCGGTGCGGTTTTGCGCAGCGCCGCGGAGTTGGGAACTACCTCCGCGTACGCGGAGAAAAGCAAAGCTGCTGATCTCCGAGGAACTAATGGATGGAACTACCTCCGCGTACGCGGAGAAAAGACGGACCTTGTTTTATCTGACGGCTGGCACTGGGAACTACCTCCGCGTACGCGGAGAAAAGCTGCCGCGCATCCCTCACCGGATCGGGGGGTGGGAACTACCTCCGCGTACGCGGAGAAAAGTTTGGGTGGAATTGTCAGAGCACGCGGCGAGCGGAACTACCTCCGCGTACGCGGAGAAAAGTAAAGATTCCAATTTATTCTTTGCGAAATCCTGGAACTACCTCCGCGTACGCGGAGAAAAGCTGCGAGTCGGTGTAGGTCAGGGTTCAAAATCGGAACTACCTCCGCGTACGCGGAGAAAAGCCGTGGCATTAGCGTTATGCTGAATTGCTTCAGGAACTACCTCCGCGTACGCGGAGAAAAGGAGGACTGGTGTGCGGGGAAAATCCCTCTGCTGGAACTACCTCCGCGTACGCGGAGAAAAGTCGGTGGGATGAGGGACGCCATTTGCTCAAAAGGAACTACCTCCGCGTACGCGGAGAAAAGTTGAGGCTAAAGCCCTCTGCGAAAGCGCCTAGGGAACTACCTCCGCGTACGCGGAGAAAAGCACTGACTGGCCCAGCAGGGCCACGGATGATCGGAACTACCTCCGCGTACGCGGAGAAAAGCTAAGGATGGGTCACAGTCGTGGTGGTCGCAGGGAACTACCTCCGCGTACGCGGAGAAAAGCGACCCCGTACTAGCAGAACTACTCCTAGCATGGGAACTACCTCCGCGTACGCGGAGAAAAGTTCACGCGCACGGATGAGGCGAAAAAGCCCTAGGAACTACCTCCGCGTACGCGGAGAAAAGAAGCAACGATTTCAAGATCACCCTTTTGATTGGGAACTACCTCCGCGTACGCGGAGAAAAGGCGGATTGCCCTTCGCGCTTTCCCACTTATCGGGAACTACCTCCGCGTACGCGGAGAAAAGGAAGGAAAATCGCCCCTCGCCCTTTACACCTCGGAACTACCTCCGCGTACGCGGAGAAAAG

>NC_015683|1|1|26730-29078|CRISPRCasFinder
GGAACTACCTCCGCATACGCGGAGAAAAG	TTATCGCGCAGATTGTGGAAGAAGCCGAGAAG
GGAACTACCTCCGCATACGCGGAGAAAAG	GGATGCACCTTTGGTTCATTTTCATGCTTTGC
GGAACTACCTCCGCATACGCGGAGAAAAG	TCATTTTTGGCTTTGATGAAGCTGGCGCGCTC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CCACGTCCCGCCTCAACCTCAGCGACAACATT
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCACACCATTCTCAGCGATCATATCAACCGCA
GGAACTACCTCCGCGTACGCGGAGAAAAG	CACCCGGCCATCTGAGCCGGGGCGCTAATCTC
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTCGTTTGTCACGACGTTGCGGACAATGATTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCTTTGTCGTAGGGGGCGCTGATTGCAAGGAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	AATGACCTACCATAAAACCATACAAAAACCTA
GGAACTACCTCCGCGTACGCGGAGAAAAG	AACGCCGTGCCCTTTTCAATCTGATCACGCAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TGCCAGACGGAACGTATCTTATGAGCACCTTT
GGAACTACCTCCGCGTACGCGGAGAAAAG	AACGCGCCATCATGGGCGGCACCCCAAAGGGC
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCTAGGGTCTAAACGTTACTACTTTTAAGGGT
GGAACTACCTCCGCGTACGCGGAGAAAAG	CGGCTGGTGATGAGGACGAAGACGCTGAGGAA
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCAAGTAACTGCACCTGGCGTGTGTTTCCCCC
GGAACTACCTCCGCGTACGCGGAGAAAAG	GACTTCCACCCCTCAAAAACCAAACGCTCATG
GGAACTACCTCCGCGTACGCGGAGAAAAG	AGCCCGCCACCGAGAAGAAAATTCAGCAGCGG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CCCGCGAAGCTTCTGCCACAAAGCCTCGTCGT
GGAACTACCTCCGCGTACGCGGAGAAAAG	ATTACATGAATTGGGTTCAAGATATGGAGCGC
GGAACTACCTCCGCGTACGCGGAGAAAAG	GTAAGTGAATACCCTGAGCTATTAAGAGCAGTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TCGGTGCGGTTTTGCGCAGCGCCGCGGAGTTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CAAAGCTGCTGATCTCCGAGGAACTAATGGAT
GGAACTACCTCCGCGTACGCGGAGAAAAG	ACGGACCTTGTTTTATCTGACGGCTGGCACTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTGCCGCGCATCCCTCACCGGATCGGGGGGTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTTGGGTGGAATTGTCAGAGCACGCGGCGAGC
GGAACTACCTCCGCGTACGCGGAGAAAAG	TAAAGATTCCAATTTATTCTTTGCGAAATCCT
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTGCGAGTCGGTGTAGGTCAGGGTTCAAAATC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CCGTGGCATTAGCGTTATGCTGAATTGCTTCA
GGAACTACCTCCGCGTACGCGGAGAAAAG	GAGGACTGGTGTGCGGGGAAAATCCCTCTGCT
GGAACTACCTCCGCGTACGCGGAGAAAAG	TCGGTGGGATGAGGGACGCCATTTGCTCAAAA
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTGAGGCTAAAGCCCTCTGCGAAAGCGCCTAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CACTGACTGGCCCAGCAGGGCCACGGATGATC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTAAGGATGGGTCACAGTCGTGGTGGTCGCAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CGACCCCGTACTAGCAGAACTACTCCTAGCATG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTCACGCGCACGGATGAGGCGAAAAAGCCCTA
GGAACTACCTCCGCGTACGCGGAGAAAAG	AAGCAACGATTTCAAGATCACCCTTTTGATTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCGGATTGCCCTTCGCGCTTTCCCACTTATCG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GAAGGAAAATCGCCCCTCGCCCTTTACACCTC
GGAACTACCTCCGCGTACGCGGAGAAAAG

>NC_015683|1|1|26730-29078|CRT
GGAACTACCTCCGCATACGCGGAGAAAAG	TTATCGCGCAGATTGTGGAAGAAGCCGAGAAG
GGAACTACCTCCGCATACGCGGAGAAAAG	GGATGCACCTTTGGTTCATTTTCATGCTTTGC
GGAACTACCTCCGCATACGCGGAGAAAAG	TCATTTTTGGCTTTGATGAAGCTGGCGCGCTC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CCACGTCCCGCCTCAACCTCAGCGACAACATT
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCACACCATTCTCAGCGATCATATCAACCGCA
GGAACTACCTCCGCGTACGCGGAGAAAAG	CACCCGGCCATCTGAGCCGGGGCGCTAATCTC
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTCGTTTGTCACGACGTTGCGGACAATGATTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCTTTGTCGTAGGGGGCGCTGATTGCAAGGAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	AATGACCTACCATAAAACCATACAAAAACCTA
GGAACTACCTCCGCGTACGCGGAGAAAAG	AACGCCGTGCCCTTTTCAATCTGATCACGCAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TGCCAGACGGAACGTATCTTATGAGCACCTTT
GGAACTACCTCCGCGTACGCGGAGAAAAG	AACGCGCCATCATGGGCGGCACCCCAAAGGGC
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCTAGGGTCTAAACGTTACTACTTTTAAGGGT
GGAACTACCTCCGCGTACGCGGAGAAAAG	CGGCTGGTGATGAGGACGAAGACGCTGAGGAA
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCAAGTAACTGCACCTGGCGTGTGTTTCCCCC
GGAACTACCTCCGCGTACGCGGAGAAAAG	GACTTCCACCCCTCAAAAACCAAACGCTCATG
GGAACTACCTCCGCGTACGCGGAGAAAAG	AGCCCGCCACCGAGAAGAAAATTCAGCAGCGG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CCCGCGAAGCTTCTGCCACAAAGCCTCGTCGT
GGAACTACCTCCGCGTACGCGGAGAAAAG	ATTACATGAATTGGGTTCAAGATATGGAGCGC
GGAACTACCTCCGCGTACGCGGAGAAAAG	GTAAGTGAATACCCTGAGCTATTAAGAGCAGTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TCGGTGCGGTTTTGCGCAGCGCCGCGGAGTTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CAAAGCTGCTGATCTCCGAGGAACTAATGGAT
GGAACTACCTCCGCGTACGCGGAGAAAAG	ACGGACCTTGTTTTATCTGACGGCTGGCACTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTGCCGCGCATCCCTCACCGGATCGGGGGGTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTTGGGTGGAATTGTCAGAGCACGCGGCGAGC
GGAACTACCTCCGCGTACGCGGAGAAAAG	TAAAGATTCCAATTTATTCTTTGCGAAATCCT
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTGCGAGTCGGTGTAGGTCAGGGTTCAAAATC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CCGTGGCATTAGCGTTATGCTGAATTGCTTCA
GGAACTACCTCCGCGTACGCGGAGAAAAG	GAGGACTGGTGTGCGGGGAAAATCCCTCTGCT
GGAACTACCTCCGCGTACGCGGAGAAAAG	TCGGTGGGATGAGGGACGCCATTTGCTCAAAA
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTGAGGCTAAAGCCCTCTGCGAAAGCGCCTAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CACTGACTGGCCCAGCAGGGCCACGGATGATC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTAAGGATGGGTCACAGTCGTGGTGGTCGCAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CGACCCCGTACTAGCAGAACTACTCCTAGCATG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTCACGCGCACGGATGAGGCGAAAAAGCCCTA
GGAACTACCTCCGCGTACGCGGAGAAAAG	AAGCAACGATTTCAAGATCACCCTTTTGATTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCGGATTGCCCTTCGCGCTTTCCCACTTATCG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GAAGGAAAATCGCCCCTCGCCCTTTACACCTC
GGAACTACCTCCGCGTACGCGGAGAAAAG

>NC_015683|1|1|28134-29078|PILER-CR
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTGCCGCGCATCCCTCACCGGATCGGGGGGTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTTGGGTGGAATTGTCAGAGCACGCGGCGAGC
GGAACTACCTCCGCGTACGCGGAGAAAAG	TAAAGATTCCAATTTATTCTTTGCGAAATCCT
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTGCGAGTCGGTGTAGGTCAGGGTTCAAAATC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CCGTGGCATTAGCGTTATGCTGAATTGCTTCA
GGAACTACCTCCGCGTACGCGGAGAAAAG	GAGGACTGGTGTGCGGGGAAAATCCCTCTGCT
GGAACTACCTCCGCGTACGCGGAGAAAAG	TCGGTGGGATGAGGGACGCCATTTGCTCAAAA
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTGAGGCTAAAGCCCTCTGCGAAAGCGCCTAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CACTGACTGGCCCAGCAGGGCCACGGATGATC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTAAGGATGGGTCACAGTCGTGGTGGTCGCAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CGACCCCGTACTAGCAGAACTACTCCTAGCATG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTCACGCGCACGGATGAGGCGAAAAAGCCCTAGGAACTACCTCCGCGTACGCGGAGAAAAGAAGCAACGATTTCAAGATCACCCTTTTGATTGGGAACTACCTCCGCGTACGCGGAGAAAAGGCGGATTGCCCTTCGCGCTTTCCCACTTATCGGGAACTACCTCCGCGTACGCGGAGAAAAGGAAGGAAAATCGCCCCTCGCCCTTTACACCTC
	AAGCAACGATTTCAAGATCACCCTTTTGATTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCGGATTGCCCTTCGCGCTTTCCCACTTATCG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GAAGGAAAATCGCCCCTCGCCCTTTACACCTC
GGAACTACCTCCGCGTACGCGGAGAAAAG

>NC_015683|1|2|28867-29078|PILER-CR
	CTGCCGCGCATCCCTCACCGGATCGGGGGGTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTTGGGTGGAATTGTCAGAGCACGCGGCGAGC
GGAACTACCTCCGCGTACGCGGAGAAAAG	TAAAGATTCCAATTTATTCTTTGCGAAATCCT
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTGCGAGTCGGTGTAGGTCAGGGTTCAAAATC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CCGTGGCATTAGCGTTATGCTGAATTGCTTCA
GGAACTACCTCCGCGTACGCGGAGAAAAG	GAGGACTGGTGTGCGGGGAAAATCCCTCTGCT
GGAACTACCTCCGCGTACGCGGAGAAAAG	TCGGTGGGATGAGGGACGCCATTTGCTCAAAA
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTGAGGCTAAAGCCCTCTGCGAAAGCGCCTAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CACTGACTGGCCCAGCAGGGCCACGGATGATC
GGAACTACCTCCGCGTACGCGGAGAAAAG	CTAAGGATGGGTCACAGTCGTGGTGGTCGCAG
GGAACTACCTCCGCGTACGCGGAGAAAAG	CGACCCCGTACTAGCAGAACTACTCCTAGCATG
GGAACTACCTCCGCGTACGCGGAGAAAAG	TTCACGCGCACGGATGAGGCGAAAAAGCCCTAGGAACTACCTCCGCGTACGCGGAGAAAAGAAGCAACGATTTCAAGATCACCCTTTTGATTGGGAACTACCTCCGCGTACGCGGAGAAAAGGCGGATTGCCCTTCGCGCTTTCCCACTTATCGGGAACTACCTCCGCGTACGCGGAGAAAAGGAAGGAAAATCGCCCCTCGCCCTTTACACCTC
	AAGCAACGATTTCAAGATCACCCTTTTGATTG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GCGGATTGCCCTTCGCGCTTTCCCACTTATCG
GGAACTACCTCCGCGTACGCGGAGAAAAG	GAAGGAAAATCGCCCCTCGCCCTTTACACCTC
GGAACTACCTCCGCGTACGCGGAGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015683.1\|WP_013910429.1\|19092_19833_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_015683.1\|WP_013910430.1\|20893_22822_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380076
NC_015683.1\|WP_013910439.1\|29096_29468_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NC_015683.1\|WP_013910431.1\|22896_23283_-\|hypothetical-protein	unknown	unknown	unknown
NC_015683.1\|WP_013910427.1\|17691_18396_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|172341
NC_015683.1\|WP_013910443.1\|34056_35670_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000721_cas8e_CAS-I-E	unknown
NC_015683.1\|WP_013910433.1\|23830_24403_-\|hypothetical-protein	unknown	unknown	unknown
NC_015683.1\|WP_013910428.1\|18472_19009_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NC_015683.1\|WP_013910446.1\|37338_38031_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_015683.1\|WP_013910448.1\|39556_40480_+\|phospholipase-D	unknown	unknown	gnl\|CDD\|176518
NC_015683.1\|WP_013910442.1\|33132_33843_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_015683.1\|WP_013910440.1\|29468_30422_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_015683.1\|WP_080561875.1\|15799_16834_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NC_015683.1\|WP_013910447.1\|38107_39142_-\|transposase	unknown	unknown	gnl\|CDD\|226202
NC_015683.1\|WP_013910441.1\|30418_33112_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_015683.1\|WP_013910437.1\|25693_25921_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375921
NC_015683.1\|WP_013910426.1\|16834_17608_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_015683.1\|WP_013910444.1\|35666_36260_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_015683.1\|WP_013910445.1\|36259_37327_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_015683.1\|WP_013910424.1\|14753_15755_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380535

Protein	Function_ID	Function_description	E-value
NC_015683.1\|WP_013910429.1\|19092_19833_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	9.82829e-21
NC_015683.1\|WP_013910430.1\|20893_22822_+\|hypothetical-protein	gnl\|CDD\|380076	pfam17961, Big_8, Bacterial Ig domain. This entry represents a bacterial Ig-fold domain that is found in a wide range of bacterial cell surface adherence proteins.	1.68756e-10
NC_015683.1\|WP_013910439.1\|29096_29468_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	9.67195e-22
NC_015683.1\|WP_013910424.1\|14753_15755_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380535	cd06312, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	1.47126e-84
NC_015683.1\|WP_013910427.1\|17691_18396_-\|hypothetical-protein	gnl\|CDD\|172341	PRK13808, PRK13808, adenylate kinase; Provisional.	0.00743503
NC_015683.1\|WP_013910447.1\|38107_39142_-\|transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.0019652
NC_015683.1\|WP_013910428.1\|18472_19009_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	6.99746e-66
NC_015683.1\|WP_013910446.1\|37338_38031_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.82761e-27
NC_015683.1\|WP_013910448.1\|39556_40480_+\|phospholipase-D	gnl\|CDD\|176518	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline and lysophosphatidic acid (LPA), which is a multifunctional phospholipid involved in platelet aggregation, endothelial hyperpermeability, and pro-inflammatory responses. Loxosceles spider venoms' SMases D are the principal toxins responsible for dermonecrosis and complement dependent haemolysis induced by spider venom. Due to amino acid substitutions at the entrance to the active-site pocket, some members lack activity. The typical GDPD domain consists of a TIM barrel and a small insertion domain named as the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. Although proteins in this family contain a non-typical GDPD domain which lacks the GDPD-I, their catalytic mechanisms are based on Mg2+-dependent acid-base reactions similar to GDPD proteins. They might be divergent members of the GDPD family. Moreover, this family does not belong to phospholipase D (PLD) superfamily, since it lacks the conserved HKD sequence motif that characterizes the catalytic center of the PLD superfamily. It belongs to the superfamily of PLC-like phosphodiesterases.	1.48243e-87
NC_015683.1\|WP_013910442.1\|33132_33843_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.09803e-35
NC_015683.1\|WP_013910440.1\|29468_30422_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.55153e-71
NC_015683.1\|WP_080561875.1\|15799_16834_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.08327e-60
NC_015683.1\|WP_013910441.1\|30418_33112_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.08032e-54
NC_015683.1\|WP_013910437.1\|25693_25921_-\|hypothetical-protein	gnl\|CDD\|375921	pfam18495, VbhA, Antitoxin VbhA. VbhT is a bacterial Fic protein of the mammalian pathogen B. schoenbuchensis7,8. It is composed of an N-terminal FIC domain and a C-terminal BID domain. FIC domains are known to catalyse adenylylation (also called AMPylation). This entry represents VbhA, an antitoxin that binds FIC domain (filamentation induced by cyclic AMP) of VbhT and inhibits its activity. It inhibits the adenylylation activity of VbhT by positioning close to the putative ATP-binding site, hence competing with ATP binding.	0.000240551
NC_015683.1\|WP_013910426.1\|16834_17608_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	2.72142e-102
NC_015683.1\|WP_013910444.1\|35666_36260_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.11783e-07
NC_015683.1\|WP_013910445.1\|36259_37327_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.8369e-81

>NC_015683.1|WP_013910437.1|25693_25921_-|hypothetical-protein
MDMMNPTERISEDQLRQIRNDLASAEIEGQPRTPEDEKILAAYYLGEISEQESFESLLKAAGVHPPYPSINHDLD
>NC_015683.1|WP_013910433.1|23830_24403_-|hypothetical-protein
MDGCKDFTCLIPMRTVWGVAEFFRLIFSFLTAENVIFSFLSKENVVFSSSYRQRKRLEHLKFLDEALEREWEKDDEESIKKQIKEIEGKFSGKHWVRQPSWMEVAIAGAMITSLTLIVSGAIFFVSHILSEYILRENGWEQGGVLALELRILIIGILLFLIIVLSAPILLDWPGSKAPDTRKKKKKWGKR
>NC_015683.1|WP_013910431.1|22896_23283_-|hypothetical-protein
MTNTFTALTERSEGWWSVQLKEDPGLLTQTRRLDQIADMVRDALELFPELTDDPENAIVNIEFREGESIADIANQAVQANQKAKQAQEEASQLMRQAAAELSKKGLSYRDIGTLLGVSFQRAQKLATT
>NC_015683.1|WP_013910430.1|20893_22822_+|hypothetical-protein
MENMSFPARSQRAGKLLCVVACAIALVSSLMIFATGQPLARAESVCSGGEWSELAWKDELSNPSLRDNTYHGPVSHAEVQFKWKAKADAKQGDKITFTLPPQLQGVDTGSILLQDSKNELVARGSWDSGRKSFVITLEQFANTHFNVQGTAFVSVKWNRDGIDGDPKKFDGSLSFNGCGHGSLDGKYEEGSEGDSHETAKIGEYRGYDSENKVHKVQWTVGLSGKTGNGQRVLVTDNAPAGWNFACDGKYNDGYAPVYVSSFTKGDPSGERRHQIFNAQNSDTGGMRYGFGDSIKNDDGFLAGYSYKLNCTPQQVSVELPYGISPESSPLISLLTISTEKPVLGSTIYNTAEVNGKNISGSVTFPSTGGQGRGSKGGFTIEKIVSGEHTSKQFSFEWSCTSQSKETKSGTIKLANGDVHHEKQLNKGASCVIKEEDADLGSEKKHSLKWSVDGEDKEGESVAISIRQPEEQAVQVVATNIYYQEEPEIPPVPPTTTSSSSPSTTTSTETTTKTTTTTTTATKTTEPSATTTTSAPPSAPRTTEPTRTPRNPLLPIPIPIPIPLPPAPPVTTTVTPHAPAPVPPPATPSIASSKPVDAAPQPPAKRLLARTGASVAGLVIPALFLIIGGVGLLMIIRRKRNSE
>NC_015683.1|WP_013910429.1|19092_19833_+|rhomboid-family-intramembrane-serine-protease
MSAQRTFRAAYNQAPATVILSVSTLIIFLITAVQSRSITDNLYDSWLGDHWILYTPQMHDPLGMLRAIGSMFLHNGPAHLAINLFLLFFLGREVEQFTGSAFFSAAYFISGLGASLTIMIMDPLSPTAGASGAIYGLMAIMVAIAITRKTDIRAPLILVAVNVGYSLITDNVSLWGHIGGLIAGAIVALPLMAAHRRHSAAGGFLAYAAPRNHRNSPRGHLITWLLVAAIAACEVIGIWVVGTRLL
>NC_015683.1|WP_013910428.1|18472_19009_+|peptidylprolyl-isomerase
MMVRMTLKTATAILHTNRGDVAIELFGNHAPKTVENFVTLADGSADYKTENASGNAEGPFYDGAVFHRVIDGFMIQGGDPTGTGRGGPGYMFADEFHPELQFDRPFLLAMANAGPGTNGSQFFITVVPTPHLNNHHTIFGEVTDPASQKVVMDIAQTATDRMDRPVEPVVIESVEITE
>NC_015683.1|WP_013910427.1|17691_18396_-|hypothetical-protein
MNSSTIRGAVLVTKAAYDKYANYRDRKTREAYDALLNAADSYDDVRKEVKSNVTDLYDQSQERVSSLTAQARKRLDSAIADAAAAKDDTVKTVNKKASKASKSLSKQSKKAQKAARKAAQSAKKSATPKKQPSFGKRLFNFSLFTTLLAAVGAVVYYFLSKRDVVSTEPPRVEDFGADSVNTQESRLVYSTQTPVDGEEEHVASPEEGATERDEDLLGSLEDQLKQHTDSQEDK
>NC_015683.1|WP_013910426.1|16834_17608_+|sugar-ABC-transporter-ATP-binding-protein
MDTSTTPIIELRDITKSYGAFDALRGVNLSVAPGEVTCVLGDNGAGKSTLIKILSGLHKQTSGELLIDDQPVTFNSPREALDHGIATVHQNLAVVGQMSVWRNFFLGQELTGFLGRLCEEEMRSIAQEQLKAMGIDLPDIDVDVESLSGGQRQVVAIARAVYFGARVIILDEPTAALGVKQSGMVLRFVAAARDKGIGVVLITHNPHHAYLVGDRFTILNLGNQILNASRDQVTLEQLTQQMAGGGELEALSHELSR
>NC_015683.1|WP_080561875.1|15799_16834_+|ABC-transporter-permease
MGTATQGDDRLRRRTGLSALIRRPEFASLLGAVAIFVLFLSVAPSFRSIDALTTVLYASSTLGIVAVAVGLLMIGNEFDLSSGVAVTTAALAATMLNYNLHLNSWVGACMSLFIALAIGALNGYLVTKTGIDSFLITLAAFLMLQGLNLAITKLVTSQVATPSIADMEGFPSAQKVFAGTVHIGSVSVRATVFWWIFFVAAGSWLLFKTRFGNWIFAVGGDADAARASGVPVARVKIILFMFVGFAAWFVGMHNLFTFDSIQAGQGVGNEFLYIIAAVIGGCAMTGGRGTIIGTAIGALIFGMTNQGIVYAGWNPDWFKFFLGAMLLFAVLTNTSFATLTKGRK
>NC_015683.1|WP_013910424.1|14753_15755_+|sugar-ABC-transporter-substrate-binding-protein
MKNLRFPLRAAVVTLAASVVLSACSATGGAPRSSNTSGGQAGGVDTPRYVVAMVTHGAPGDTFWDLVRKGAEDAAKKNNMELRYSSDPEAPNQSNLIQNAIDSKVDGIAVTMPNAEAIGPAAKKAVTAKIPTVALNAGMDAYQKYGISAFFGQEEKVAGTLAGKRLSHDGAQHALCVIHEQGNSSQEARCAGLKEGLAGADMEVLYVNGKDMTSVQSTVQAKLAQDKSIDWVMGLVAPVALTSVDAVKNSGSSAKISTFDTNAQLVTAIKEGTVQWAVDQQPYLQGYMAIDALWLAQRNGSTVGGNRPVYTGPSFVDATNVDKIADSAKAGLR
>NC_015683.1|WP_013910439.1|29096_29468_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MFAVIQGHNLPNHLNGYLSRFLSEVDAGLYVGVLSRAVMENLWEKCQSVDLAGSLTLIHPQYDAEQGFRIRTTGKQRRPVVDLDGLFLSARGLIEDVRFADPLDEADAIIPDEVLEDFCPESE
>NC_015683.1|WP_013910440.1|29468_30422_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSYSNEALAFSTIPASEQIRLEDRVSFLYLEYCLIRQDRTGVIAVSRGDEKAPAELKDLPIKARIQLPVGGLAVLMLGPGTSISQPAATSCARAGVSVLFTGGGGVQAYSLSTPLTSSARWAIAQARLASNEAKQRTAARILYKRQLGIEEIEADSIAVMRGIEGRTIRNLYKRLSAQHKIKNFKRDTNATDPVNTNLNLGNSILYGCAASACAALGINPALGIIHRGDIRSLLFDLADLYKPTLTIPAAFKCADNDDDGSEFRRLVRSEIVNQDLLKNMIHIMMEILTPHLPERTDDRLIGGRNHEVPGHTQYGGK
>NC_015683.1|WP_013910441.1|30418_33112_-|CRISPR-associated-helicase/endonuclease-Cas3
MTNAVANHHVLWAKFDNVSEPYPLLAHLLDTATAATCLFNHWLRKGLRDRLSTELGPDAEKILGFVAGIHDLGKANPYFQAQRRNKKEEWITLRDAIQKAGFPLSNGTSALFEETKEKRRHENITLSILGWEITKFLQVKDVWPQLAIIGHHGNFSAPGFLSDEDDLEDIEDIFDDNGWSPTHELLVSSLLQAVGLEKQPEIKHISPASAILISGLVVLADRIASQSEMASDGLQALQKEELFFHQPEKWIANRKAFCREIIENTVGTYHPWESEAAGIRAVLGDYEPRFTQKAALNAGDGLFNVMETTGAGKTEAALLRHVKRKERLLFFLPTQATTNAIMDRIGKIFDGTPNVASLAHGLAVTEDFYAHPILPVQGSSDDANYKDNGGLYPTEFVRSAGTPRLLAPVCVGTIDQALMGALPSKFNHLRLLALANAHVVVDEVHTMDQYQSELMSGLLEWWSATDTPVTLLTATMPAWQREKFHLSYTGKDPHFKGVFPSLEDWSTPSKNTETSQENIPTEAFTIPINIDKIAHNEIVDSHVQWVIEQRKLFPQARIGIICNTVGRAQSIAEALAHESPIVLHSRMTAGHRKEAATKLEQAIGKKGTANATLVIGTQAIEASLDIDLDLLRTELCPAPSLIQRAGRLWRRLDPQREVRVPGMVGKKLTIAVVDSPSTGQTLPYLRSQLYRVESWLKQRDRIEFPADIQDFIDATTPGLQELFQKVSLPEDCGSAEEREALADDYLNEVASWVTKQRQAGTSRIDFAKHGKPRQVLASDCVVEDFLQITSANNLEESATRLIDYPSISAILCDPTGTIPGAWTDSVEKLIAISAKDSESLRRALRASISIPHSKKFLPITSREIPLSEAKTLLSGYSAVHIQPDEYDLQSGLKGPQK
>NC_015683.1|WP_013910442.1|33132_33843_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTNAIYWTHFPAHIALNKSLVLGDSATKDSKNKPRWDVDDPIFRHRAVMALFPEHQSDNARADSNILFRLEALPGQPPYFFVQSSIEPSNRNLDNHIKTRQVDLVSPEAGTPIEFRLSINAVRRKTIDATENTKRKIKTTCLSLKALDSDPTETAAGQWVKEKLSPALENIDIVRHGRQVLGANRNGEKTSNRTVQVDTIDGFAHVKDPAKLQKILIHGIGRAKSYGCGMLTFRPI
>NC_015683.1|WP_013910443.1|34056_35670_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSNVFKDFPFVKTNKGPMTVEEFFHSSHEESLHLDLSIPGYEYGAIWRLLASLTAVIVQRDPSLLERGESGSELRFDPEFISQILDDLGSKISLTEGKNLFFQRPLLEGENPKDTARYVGPGKDPAWKLSPTAPSEKSQIYWNLEKLKPESLEAVDAIVALMVFSMYSFTGNSKYDGAKCLNGSPGIRFLGGGNTATEFIIESKTPLLSLLKSIPLEWCEPGGLPAWLDRTGAESRKPNGEMHPLWRATWSSNTAACCWDGETLIGVGIGGIPPEWYALEMGSKPEARKEWWDQRNTEDPFYFYQPDKGGALKAKRLDLSRDLTELAVEWVAEDLSTALDERVRGRALRVDFKKEDSLLFIRHQIGGNASSAMIRESVVSQARKQQWVFDPTGALQKQVRGKADFILSLRNIVLSPFRRENKSDRDRGRRVLDNLASERPKMNETFWREIAPIYEEFILYFTEQVSGDETRKEVRAQAKKTLKELEKDAVRTAQKAFDMVLEPYLLQNPSQAYEVRRRIHSYLASKIAEANEGDQK
>NC_015683.1|WP_013910444.1|35666_36260_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTTNRPKQPWTPLVAEFAQRKKDKEFRAKRSALRAGSGIYTEFRAYSYVLPFLGEKASEAQRTALLRCMAALAEYPDIVSSGEKATASSVGQWVNRVAFDGKQGQSEPDSMVASRIKYLHTQDLEEAISSLRRIMAFADRKNMAIKLNPYQFVELFWYWGNGFTDASTKHRLSVLRDFYSTKQKENTDPQSSSEGEK
>NC_015683.1|WP_013910445.1|36259_37327_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRHLTIHVVASVPYSNLNRDDSGTPKNVRRGGVTCALLSSQSIKKGIRTKYEDASLDTSVRSGRIADDVLERAKVLAPEADTKALEKAVKKIIGTLTKVAEANESEGESDRSIWLSAEELEAAAVSVVEQAEKKDFIEDGRTGSLAIAAFGRMFAAAPQKGTEAALSVSPAVTTHGVTIATDYFSTVDDIRERNRDTGATYLGVSQYTTGVFYRTVTIDKEQLRESWTGLDREDAKENLAALVNAIIYGLPRGKQHSTAPFVQPALILAEEQSYRCAYDFESPVQADTREGGYLKPTLEELKRQYDSARAFDADNFGETQVVSGTYPEVSEFFAGAKYADKNGFIDEVVAWIQR
>NC_015683.1|WP_013910446.1|37338_38031_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTTTSVYLRLAGPLQSWAGPAVTGNFVRTEPIPTHSALVGLIAGACGYRRDEWPDWLNPLNFRVRVDHPGKFVDDFQTVSAHEEEMLFRERLIYATGKRPSAKTTRLTPDGRGMTSIIQRTYLAEAEFIVEVASDTHGELLRDALRAPKFSTYLGRKAFAPAFPFYLGATTDVDVLHRIPACDLSGAKRDTARVQIHHCSAELHTSAEHINVPAVQERSDWLEKTKVLFA
>NC_015683.1|WP_013910447.1|38107_39142_-|transposase
MASHPYGHHCDICGSVVKKNGKTSAGKTRYRCTGCGASSTATRSGTLHQRQMKAFISWILGGKPRDKSDVSRTQRRLMSWCWQVPVPQPYMEDKACILVMNEGTFFQSWCLVVAYNSTHVLGWQWVRKDDKTTCAQVYTYFPRPSAAVISGDESTAQAIQSLWPGIPMRRCLSSIKESVDQKISHTPHTQPAIEIKNLTDSLSYVYTSEQAQLWLDRYNTWETTWKELLKHRTDSPNTNHNENSCGWQWTYKELRSIRLMYRTLIKKEELFFQFTAPAIPLSDAALPCQTSLLGDDLSADIKKLFHTHRGINHEHARRMVEWYLNSKTESPFIPERIIKHDHWE
>NC_015683.1|WP_013910448.1|39556_40480_+|phospholipase-D
MKKKVVLFLSIIMGILLPVGNAVATPVSHDAASTGNRPVYAIAHRVLTTQGVDDAVAIGANALEIDFTAWRGGWWADHDGIPTSAGATAEAIFKHIAEKRKQGANITFTWLDIKNPDYCTDPDSVCSINALRDLARKYLEPAGVRVLYGFYKTVGGPGWKTITSDLRDNEAIALSGPTHDVLNDFAKAGDKILTKQKIADYGYYDINQGFGNCYGDGNKTCDQLRKSSEARDQGKLGKTFGWTITTGQDERVNDLLGKAHVDGMIFGFKVTHFYRHADTENSFKAIKTWVDEHSDTHHLATAADNPW

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Crispr_ID: NC_015683_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015683_2

108234-109011

Unclear

Consensus_repeat	Method
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	CRISPRCasFinder
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	CRT
GAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	PILER-CR
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	PILER-CR

10 spacers

cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

The CRISPR arrays of NC_015683_2

>merge|NC_015683|2|108234-109011|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACCCACGCGCATTAAAAAGCGCACATCTTCACGAATGAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACGGTGTCACCGGAAAAGCTTGCTCATCCCCACCGAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACGGTGTCACCGGAAAAGCTTGCTCATCCCCACCGAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACGGTGTCACCGGAAAAGCTTGCTCATCCCCACCGAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACCAGCTGCTCAGTCGTCCACGTTTTCATCTCCTGAACACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACTACCGCGATGTAGACCTCCACCAGCGCGAAGTCCGCCTACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACCTGCGATGAGGGTGTTTTTCGGGTTACTGCTCTGACGTAGTCGGTGTCTTCTGCTCCTAGACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACGAAAAGGAGAAAAAGTGAGTGTCACAGGTGAAATAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACTACAAGCAAATTCTCGAGTGGTTCCCCCTAGCAGATACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACTTCTGGTCAGCCCAGCAAGCCCGCGTGCTTATACCACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC

>NC_015683|2|2|108234-109011|CRISPRCasFinder
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	CCACGCGCATTAAAAAGCGCACATCTTCACGAATGAA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACCGAA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACCGAA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACCGAA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	CAGCTGCTCAGTCGTCCACGTTTTCATCTCCTGAAC
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TACCGCGATGTAGACCTCCACCAGCGCGAAGTCCGCCT
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	CTGCGATGAGGGTGTTTTTCGGGTTACTGCTCTGACGTAGTCGGTGTCTTCTGCTCCTAG
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GAAAAGGAGAAAAAGTGAGTGTCACAGGTGAAATA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TACAAGCAAATTCTCGAGTGGTTCCCCCTAGCAGAT
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TTCTGGTCAGCCCAGCAAGCCCGCGTGCTTATACC
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC

>NC_015683|2|2|108234-109011|CRT
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	CCACGCGCATTAAAAAGCGCACATCTTCACGAATGAA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACCGAA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACCGAA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACCGAA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	CAGCTGCTCAGTCGTCCACGTTTTCATCTCCTGAAC
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TACCGCGATGTAGACCTCCACCAGCGCGAAGTCCGCCT
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	CTGCGATGAGGGTGTTTTTCGGGTTACTGCTCTGACGTAGTCGGTGTCTTCTGCTCCTAG
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GAAAAGGAGAAAAAGTGAGTGTCACAGGTGAAATA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TACAAGCAAATTCTCGAGTGGTTCCCCCTAGCAGAT
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TTCTGGTCAGCCCAGCAAGCCCGCGTGCTTATACC
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC

>NC_015683|2|3|108304-108555|PILER-CR
GAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACC
GAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACC
GAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACC
GAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACCAGCTGCTCAGTCGTCCACGTTTTCATCTCCTGAACACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACTACCGCGATGTAGACCTCCACCAGCGCGAAGTCCGCCTACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACCTGCGATGAGGGTGTTTTTCGGGTTACTGCTCTGACGTAGTCGGTGTCTTCTGCTCCTAGACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GAAAAGGAGAAAAAGTGAGTGTCACAGGTGAAATA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TACAAGCAAATTCTCGAGTGGTTCCCCCTAGCAGAT
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TTCTGGTCAGCCCAGCAAGCCCGCGTGCTTATACC


>NC_015683|2|4|108762-109011|PILER-CR
	GGTGTCACCGGAAAAGCTTGCTCATCCCCACC
GAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACC
GAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GGTGTCACCGGAAAAGCTTGCTCATCCCCACC
GAAACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACCAGCTGCTCAGTCGTCCACGTTTTCATCTCCTGAACACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACTACCGCGATGTAGACCTCCACCAGCGCGAAGTCCGCCTACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGACCTGCGATGAGGGTGTTTTTCGGGTTACTGCTCTGACGTAGTCGGTGTCTTCTGCTCCTAGACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	GAAAAGGAGAAAAAGTGAGTGTCACAGGTGAAATA
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TACAAGCAAATTCTCGAGTGGTTCCCCCTAGCAGAT
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC	TTCTGGTCAGCCCAGCAAGCCCGCGTGCTTATACC
ACCTCAATGAAAGGCTGCGACCGAAGCCGCAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015683.1\|WP_013910511.1\|107625_107925_-\|hypothetical-protein	unknown	unknown	unknown
NC_015683.1\|WP_013910514.1\|111106_112138_-\|CRISPR-associated-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
NC_015683.1\|WP_013910509.1\|106576_106984_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|200128
NC_015683.1\|WP_013910502.1\|96748_100042_+\|1,4-alpha-glucan-branching-protein	unknown	unknown	gnl\|CDD\|200478
NC_015683.1\|WP_013910520.1\|119200_119788_+\|dehydrogenase	unknown	unknown	gnl\|CDD\|380327
NC_015683.1\|WP_013910521.1\|119869_120427_+\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NC_015683.1\|WP_013910506.1\|103744_104317_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_015683.1\|WP_013910517.1\|116397_117603_-\|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
NC_015683.1\|WP_013910519.1\|118300_119107_-\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001
NC_015683.1\|WP_013910510.1\|107371_107629_+\|hypothetical-protein	unknown	unknown	unknown
NC_015683.1\|WP_013910503.1\|100319_101456_+\|glycoside-hydrolase-family-25-protein	unknown	unknown	gnl\|CDD\|119373
NC_015683.1\|WP_013910505.1\|102828_103584_-\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NC_015683.1\|WP_013910512.1\|109204_109504_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015683.1\|WP_013910513.1\|109500_111102_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_015683.1\|WP_013910518.1\|117881_118019_+\|hypothetical-protein	unknown	unknown	unknown
NC_015683.1\|WP_013910515.1\|112142_114824_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NC_015683.1\|WP_013910516.1\|114816_116394_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NC_015683.1\|WP_013910508.1\|105937_106549_-\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|379205
NC_015683.1\|WP_013910507.1\|104414_105923_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NC_015683.1\|WP_013910504.1\|101510_102596_-\|inositol-3-phosphate-synthase	unknown	unknown	gnl\|CDD\|132491

Protein	Function_ID	Function_description	E-value
NC_015683.1\|WP_013910514.1\|111106_112138_-\|CRISPR-associated-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	5.60944e-87
NC_015683.1\|WP_013910509.1\|106576_106984_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	1.86899e-07
NC_015683.1\|WP_013910502.1\|96748_100042_+\|1,4-alpha-glucan-branching-protein	gnl\|CDD\|200478	cd11339, AmyAc_bac_CMD_like_2, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	2.07324e-83
NC_015683.1\|WP_013910520.1\|119200_119788_+\|dehydrogenase	gnl\|CDD\|380327	cd03370, nitroreductase, uncharacterized nitroreductase family proteins. Nitroreductase family containing Thermus thermophilus NADH oxidase and other, uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	7.49891e-28
NC_015683.1\|WP_013910521.1\|119869_120427_+\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	5.51228e-73
NC_015683.1\|WP_013910506.1\|103744_104317_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.89211e-09
NC_015683.1\|WP_013910517.1\|116397_117603_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	9.92541e-35
NC_015683.1\|WP_013910519.1\|118300_119107_-\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.26106e-39
NC_015683.1\|WP_013910503.1\|100319_101456_+\|glycoside-hydrolase-family-25-protein	gnl\|CDD\|119373	cd00599, GH25_muramidase, Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.	2.9712e-65
NC_015683.1\|WP_013910505.1\|102828_103584_-\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	4.18517e-88
NC_015683.1\|WP_013910512.1\|109204_109504_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.3999e-21
NC_015683.1\|WP_013910513.1\|109500_111102_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	2.06556e-98
NC_015683.1\|WP_013910515.1\|112142_114824_-\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	1.15679e-83
NC_015683.1\|WP_013910516.1\|114816_116394_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	8.16311e-63
NC_015683.1\|WP_013910508.1\|105937_106549_-\|PIN-domain-containing-protein	gnl\|CDD\|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	4.72345e-05
NC_015683.1\|WP_013910507.1\|104414_105923_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.6382e-60
NC_015683.1\|WP_013910504.1\|101510_102596_-\|inositol-3-phosphate-synthase	gnl\|CDD\|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0

>NC_015683.1|WP_013910511.1|107625_107925_-|hypothetical-protein
MKEKKLSSLVFGNVILESQILGTTIRIYADDMRSYSFRPSPYASLSVPLNELKGQLQPDHAEALAKKVFDSVAEELNKNYPGGCERAEKELKAWLMRTN
>NC_015683.1|WP_013910510.1|107371_107629_+|hypothetical-protein
MCAGTRFLPLSAKIRLQEEHFGFFYETVDETFKSLTEGGYGFVRGEAICGPTTSGHDYRISGEIFAGSHHGFGISREVHLPCNVN
>NC_015683.1|WP_013910509.1|106576_106984_-|helix-turn-helix-domain-containing-protein
MTIQTEASLNLTTEDAKILTAFRHQLAGEDPKITSKAGQEAPDQLIDIIRKVLDAVAYGRAISISQLPARITTTTAASMLGVSRPTVMKYIRQGKLSNTMVGSHHRLDTQEVLKLLNDRKEEMRRSVFEVLDLET
>NC_015683.1|WP_013910508.1|105937_106549_-|PIN-domain-containing-protein
MTTAAPNEYTPIPNSVLPDANIWFSTTLHAWIGLLAAETLGSWSFYWTEDILAEAIYHKRREYPKTSSHQIEAIRDRLMTVMAENRITGFAIDESVSYSDTFDAHVHSAAIHGRIQIIVTQDYKDFADLYSNSDDCPYEVFTPDEFLLLVAESAPEAIDAVIEQQFSYYMQKSHSFNLAQKLISAGCPHFAEYVRTRLQALSP
>NC_015683.1|WP_013910507.1|104414_105923_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MTKTSNRWAVLTILMIGVSLIVLDSTIVSVSLPTIITSLNLSLTDAQWVSSLYSVVFAALLLFTGTLGDKFGRVLIFRIGLIVFALASLLAAVSGSAALLILARGLQGVGGAMILPSTLATINTVFRDQERAQAFGIWGATMASMAAIGPLLGGWLTQSLSWHWIFLINIPIVIALLIAGHFVFGPDHKGDIVGFDVPGTLLSALALGLTVFGLIEGTSLGWWNSPVPFAIAFGLIATVLFIVLERARQRAGKPVLLDVHLFRIGSFSNGNITALTVALGEFSALFVLPLYLISVLRLGTIHAGWVLATLALGSILSGAAARHLAATFGPAVTVIIGLVLEVAGIAGAGLLIGSATSAPLIALVLAIYGAGVGLASAQLASVVLADVPVESSGMGSATQSTSRQLGSALGVAIAGTVLAVDVMRRVTEGLTNLGMTGPQAEQLAHATADSAGAAIPALAEKMGPDVGSVLSTAFADATSSVLYVSAGVLLLGLISAVRLAKR
>NC_015683.1|WP_013910506.1|103744_104317_-|TetR/AcrR-family-transcriptional-regulator
MENMGSREENREKTQAAILDAAEALLREGGVEALTAGAVAQQVGLARNSLYRYVGSMDELRGRVILRHFPNYVEAINQAIHEATTPTEALCAYIEANLQIVAVENHGWLMELAQGVGGEAEANIAHSHRKLIESLGNLLAPFNLDNPTLAAALIQGVLSTGFSALERGHDVQEVTALCVQGALGIVGKPQ
>NC_015683.1|WP_013910505.1|102828_103584_-|VIT-family-protein
MTFPDYTAAQPETHAQPETHKEPSNRLNSRLNWLRAGVLGANDGIVSVSALILGVIATGVGHGAILAAGIAATVAGAISMALGEFVSVSAQRDSERMVMERERLELLHTPEEERHEIAKILSDYGMSEETALRAATEIGHNDPFPAHLRIEYGIDAQDLTSPWHAAFSSAAAFTLGAILPLLMVVIAPQGNSTVGVIAVSSITIIALAVTGYLSAAIAGTSRMRSVLRLVLGGTIGLALTYVAGALFGGVV
>NC_015683.1|WP_013910504.1|101510_102596_-|inositol-3-phosphate-synthase
MSNNRTIRVAIAGVGNCASSLIQGVEYYKDADPATNVPGLMHVQFGDYHVGDIEFVAAFDVDKEKVGLDLSQAINASENCTIKICDVPEQGVTIQRGPTLDGLGKYYRQTITESDAEPVDVVGTLKDVRVDVLVSYLPVGSEEADKFYAQCAIDANVAFVNALPVFIASDPEWAEKFEKAGVPIVGDDIKSQVGATITHRVLAKLFEDRGVHLDRTMQLNVGGNMDFKNMLERERLESKKISKTQAVTSNLDQHIEAHDVHIGPSDYVGWLDDRKWAYVRLEGTAFGDVPLNLEYKLEVWDSPNSAGIIIDAIRAAKIAKDRRLGGPVFAASSYLMKSPPQQLRDEHARAELESFIAGDPS
>NC_015683.1|WP_013910503.1|100319_101456_+|glycoside-hydrolase-family-25-protein
MMKTRRLKTALCTVLASSTFAVASVQAIPLPFPIGASSGIDVSGHQHPNGSSINWQDVKSHGQSFAFVKATEGLGWTNDFYASDITQAAAQGLKVGSYHYARPGADARQQARHYAKVISHTPNHSLPPVLDLEVAEGKTPQELVNWTRDFVQELEKQTGRVPMIYTYRYFWIEQMANTTEFSQYPLWLAAYQAQVPGTVGGWDQIDFWQRSSSGRINGIVGDVDMNLFNGDDGELAAFAAGNLHAAGNKFASINLPELADLGKSAGGVVAVILALSAGAAAAPQLIQAAEAAGLSSEGAQDLTAVVQALAKAGKLPVDQLNKMASGNYTVGDLVILLDNAAHLAGIDAGQSSQAVMRADGLNIDANQVARVIRGLAAR
>NC_015683.1|WP_013910502.1|96748_100042_+|1,4-alpha-glucan-branching-protein
MKTYRCHARRILTALTTLTLITAGGALSRPPAQAADPSSVVIAADFQTKAGCTKDWDPACSQTQMEKQGKFYSKKIKVPKGDWNFKVVLDKNWDTSYGAPGKGYTDDNVPLKLAADAELEFIFDPESHHIGLRPTQITTGDHEVKPEDRELIKAPYRQNAAQNNFYFVLTDRFNNGDPKNDRGDASAEQGDRAQHGFDPTSKAFYHGGDIKDIIQKLDYIQGLGTTAIWLTPSFKNKAVQGTGNDASAGYHGYWITDFTQIDPHLGTNQDMKDLIKAAHEKGMKVYFDIVTNHTADLIQLAGGNGSNGSKYVSQREQPYKDVNGKVFRLEDYAGKDAREFPKLNKESFPYTPQRTNPAEKMTPDWLNDVTLYHNRGNSMFDDGGESVIMGDFFGLDDLMTEHPTVVDGMTKIYNEWVDYGLDGFRIDTVKHVDLAFWKQWTERVHQHAVEKGMGDFFMFGEAYNFSPEALSPFVRETHMDAVLDFAFQNNAVDFAKGGDTNKLKSLFYGDDWYTTTRSDAAVLPTFLGNHDMGRIGSLLQNSGDGAERLRRDQLAHALLYLTRGQPVVYYGDEQGFAGKGADKDARQDMFATKVTDVHNEQLVNGDQFGTGDHFKPDAPVAKTITELAKLRKENKALVEGAQIERYATSGAGIYAFSRVNREEKQEYLVALNNATTTREVDLNALTPNAEFERVYISSIYGNEAPTSLTTDNEAKTHVTVPGLTAVVYKVKNGKQVTGSVSGGLNIVGQELKGDAPIMTTVGGNAWSETNFGWRKLGEKEWNYLGTDTGQDARIFHNVRDLEPGTVVEYRTVTVDGDNKETASHGWGVVGVDLAVDSRALSVSATTASATVPAAVVAGNFTKDLGCTGGQEGNWDPACAAAELRDDSSGWKTAELTLKPGEYEYKIATGGSWAQNYGALSEGTRESDEGILDGKNVKFRVTQDKQKVTFFYHPETHEFFNTAEHRVITLPGTMGGALECPANVEKSDEHGNWGPACLATMLTRTGAHTYGTRLPKVPTPGDYQVKVAYDRDWQESYGPDGRGDSNYLVTVAESGKVLSYKWDEQTKKLTWTTSDQGASLVEDAAMPTELEESVALEN
>NC_015683.1|WP_013910512.1|109204_109504_-|CRISPR-associated-endonuclease-Cas2
MRRDDVRRTIIAYDIAHDRRRNKLAKILQKYGDRIQYSVFVVDCSPAKLLRLKDEIKLSINAEEDSVLYCDLGLLSKVDTTFTYEGRKQEITDNKFLII
>NC_015683.1|WP_013910513.1|109500_111102_-|CRISPR-associated-endonuclease-Cas1
MQALIDPVPISLVVHTEYCERRTWLELNGEQTDTYQMQAGKSSHVHVDNLKTSTPHRQVSVKVWSDELGILGICDSLETLPDGTIRVVEFKATPVRKAPIVTDANRLQLALQGICLREMGYKKLEYAVYFTDHRKTIEVELNSADFEHAKNQALRTHEIAQASTSPIPLDEDPQCTWCSHLSVCLPDELFQRQPQRRVLAQNPDSQVLHLTEQGSRASKKNGRIEVHRKSELLGSVPIERVQAVVLHGNIDLSSALIRELAWQHRPVVWCSSTGRLYGWMLPGDGPNGLARVRQHVLAETGFIPIASEIISSKIYNQATMLRRHGSAKEAVASLRRLQETARTVNDIPSLFGVEGEAASKYFESFGSMLNDAALHSLGAQWLGRKGRGAQDHINVLLNYAYGMLTAECVRALIACGLDPHAGFLHSSNRNKPAAALDLMEEFRPVVADSVVLTLINRREIASRDFFIRDKGQALTTDGRKKIVKAFERRIQTQFKHPTFGYSVSWRRAIEVQARMMLGVLDGTQLRYKGVKIR
>NC_015683.1|WP_013910514.1|111106_112138_-|CRISPR-associated-protein
MFTIDIAGDASSALSHFALLGLAAVAEEMGDNSVRLLWSLDSEPKAQLRSIYDPLLIAQRIRELATRWSEDSSWVKARKNYAGKQFAPFSPRIKAIDAEKSPHDWEEHHHIRTSHVDQLLADKRWLDLSFISALGEPSYWHNEKKAPRPDHGASRWEMKTRNRGEEFVQHRLSLMVDELSSWTNEDILAGIQGKQVHDPLGKNSPDSRTSTGLTPPGPTDVALAFVGLLGIASFQLAPQVKEKSVTPGAFPPQALHPVLMVLPMSSTPISLGRARSVLRSEAIACIGGELVRTGDIGTTAVVSASKWLLEHGINAVALFDIKKAGSSSAPERQVQPGSVLPLG
>NC_015683.1|WP_013910515.1|112142_114824_-|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MPSITFDAFFAELNDGHRPFAWQQRLVDAVIKTGTWPAQIVAPTGTGKSSVVDIHVYLNALYALGECPRVPRRLSVVVNRRALVDSHIDRAETILRTMQEAKAGSVLATLSQALTSLRSDAHQDPFIVSRLRGALTNKTLPVNSLEACAIIAATPDMWGSRALFRGYGSGRLARPRETALFTMDAVVLLDESHLNRQLLTTARRIAALQELEVDLHVPRLQVVAATATSTETLGLAQSIGVFEEDCERDPVIAQRIDSSKHLSLLKLKKWNGRPKNSEIIATAVEEVLRLCADADSTVGCIVNHVETATKIHRILKKKGLRSEILVGRMRPHDVAQMKARRPGLFTIQGSQEVDVLVATQTMEVGVDVDFAHLVTELAPGSSLTQRFGRVNRLGHRVRSEVSVLIPSTADAIKTDVPPYTRKDLLNSLAWLEQLAEAGTVNPRRLLELPAPEESPGRVLLQRLEWADLHNLCRTTDPLFAEPDLDLWLRDSLEKDPALGGVVVRSPLPEDFNAAVELLNATKPQDFETFPANIAVLNRLKDVLAPTDESFKQKASAVRHRAFLYRDSEVVLLDHDKPLRPTDILIIEPGTPFTTEGVASATPEDSELISPAPLPGIDVHVFDSAMDKAEAESFKQIAAELSEDSEETTTEIQRPKGFQCSTMVLETNHRHGFDAVVPWYITETDDAIRTEEEALQEWSPTSKTVTLQQHQADVAEQADNLCTSVGLRHDFHQIVVQAAAHHDDGKIEPRFQTWLRGGKTSDDQEPWAKSAQRNRQDIRRAKNISGVPPKWRHEQLSALKVAVQLGYDTPETELILRIVGCSHGHGRSTFPYSSWEMISPLATDQEQAVARHLFSEGEWDSIIERTNRTIGPYAMAYLEALQRAADAHVSSEGR
>NC_015683.1|WP_013910516.1|114816_116394_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MPKYCLTARFPLGVYLGHTGDANRDAYPDPARLHAALMNAAAQGVHAEEDPNEHQLRPSQQSLQALQWLEAHPPTGLAMPEQQWLSPDTSRMMYRNVGSVKIDKTGVTRATENRAVSDGVSVNGAYGYIWDEMPVDIAEAITALLPDVACLGEASSLVVLEQQEIEATLTLDPQATAFSTERVQVRIALPGRTQHLREVFHARYGKKPPSKKADKFLKDDPIHDLPIPKDHLGTARYLRVNAADKECVTPWTKVILLEVHGKQLGAKEQVRAAVALHRALIARIRTDVSPVITGRYAAGAQRPANNLAIQYIPHRHLEALGLKTSAFALLVPQDADSTVYEQLNQALTGPFPLRSGGKLLCQLKYNGHVFRGDAFWPAPQPGTIRMWEPLNVFIPESRPHNKQQGVLWRLADAGLLSVAFVWRDNFPTKETGPARYVELRDAAYNADVRIFHDHPVSRNTRRFVHRTNRSLTIQPWRGLVHLGSLQQDRAIIALGQSRHLGGGLLIPVDIPRSEFETMTSEMTHA
>NC_015683.1|WP_013910517.1|116397_117603_-|type-I-U-CRISPR-associated-protein-Cas7
MGTLSYTDLVKACSAGGSSVLTSITELEAAVGQHGSVAPAKFVNRSEPVFAFEDRFIDGESKRTVLIDSKQSQLNRAEAALMQAINEGNETLNRIPRIEVSYNDSKVFSDLELPHRFTDGHIRAGSIDGKPTTENDLYISARNSTPRNMKPLLNLAPSALIFGGWDASRKSDQVKLRSALVGEIIGVLANQNRAESYSRRGGARVDPVAASVKMTGTDLKETALVQSHELSQKTRSKLDNQVKKAKKGETVSASPLGLGALPPSLESLGGVACQRIIRSWALSFAALRQLRFGGTAEQDIAARALLAALGLAAMARAESELNIRANCDLVEQGKPVVTLDLRYGEKRELEPISVEAADELLKEAIAKASACGVADWEGQILHVTGNPVVLRGATEDDAEAE
>NC_015683.1|WP_013910518.1|117881_118019_+|hypothetical-protein
MAKPLMIGSDVFDGRFVIVAGISSLAVRFAVWEVMAYGNKQYWRF
>NC_015683.1|WP_013910519.1|118300_119107_-|triacylglycerol-lipase
MAIIDAPLPLSARLPARGLFEDDWRARPTSRHPYPVILIHGTGVTKGDWMELGTDLRKKGYAVFAPDFGMRSTAAVAESADQVGAYIHAVLKVTGAERVILVGHSQGGILARYWMHHLDGARYVTHLICLAVPNHGTSHGGVISPLTRTARGTVVVDSIITNFFGASGFEMLAESDLIQELNANGDTLPGIYYSCITTKSDTIIQPVESCFLTGPLVRNIYVQAVSKRAIVLHEDVPHDRRVRRIVLSELERVERLTAKKHVRTEHNT
>NC_015683.1|WP_013910520.1|119200_119788_+|dehydrogenase
MSLTVAEAIANRRATRQYTEQEVSDAVLDVVVSQALQAPSAFNAQRADLVVIRDQAIKDKIFAASGQKQLRDAPVVLVTVARADVPEDLDEVLGVERATFVRNVLAKADAARLRETALKDAMLVAGFALIAAQGEGLATSPTTGWDEAKVLEAIGLADRSDRAVGLVIGMGYPAEFPAHPGRAESRRVNDGYARD
>NC_015683.1|WP_013910521.1|119869_120427_+|gamma-carbonic-anhydrase-family-protein
MNSGPIILPFNGKTPRVHETAFIAPNATLIGDVEIAAHASVFYGCVLRADINMIRVGARTNVQDNSVLHVDGDAPCILGEDVTVGHMALVHGSTVGNGTLVGMHSALLSRSVIGAGSLIAAGAVVLEGQEIPAGSLAAGVPAQVRRVLSSEQSAGFIPHAGKYVNVASMHRELGMSLSLDQVRFS

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Crispr_ID: NC_015683_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015683_3

1537109-1537269

Orphan

Consensus_repeat	Method
GCAGCAGGTTTTGGAGCGGCTGGCTT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_015683_3

>merge|NC_015683|3|1537109-1537269|CRISPRCasFinder
ACAGCAGGTTTTGGAGCGGCTGGCTTCGCGGAAGCCGGCTTGGGTGCTGCAGGCTTTGCGGCAGCAGGTTTTGGAGCGGCTGGCTTCGCGGAAGCCGGCTTGGGTGCTGCAGGCTTTGCAGCAGCAGGTTTTGGAGCGGCTGGCTTAGCAGAGGCCGGCTT

>NC_015683|3|3|1537109-1537269|CRISPRCasFinder
ACAGCAGGTTTTGGAGCGGCTGGCTT	CGCGGAAGCCGGCTTGGGT
GCTGCAGGCTTTGCGGCAGCAGGTTT	TGGAGCGGCTGGCTTCGCG
GAAGCCGGCTTGGGTGCTGCAGGCTT	TGCAGCAGCAGGTTTTGGA
GCGGCTGGCTTAGCAGAGGCCGGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015683.1\|WP_013911755.1\|1545762_1546878_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
NC_015683.1\|WP_013911737.1\|1524033_1526337_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NC_015683.1\|WP_013911743.1\|1531491_1532844_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NC_015683.1\|WP_013911745.1\|1533923_1534361_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_015683.1\|WP_013911741.1\|1529877_1530549_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NC_015683.1\|WP_013911756.1\|1546918_1547482_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NC_015683.1\|WP_013911742.1\|1530545_1531421_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NC_015683.1\|WP_013911748.1\|1538285_1539284_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NC_015683.1\|WP_013242127.1\|1526476_1526746_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_015683.1\|WP_013911747.1\|1537635_1538010_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NC_015683.1\|WP_014836516.1\|1527927_1528926_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_015683.1\|WP_013911749.1\|1539280_1539835_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NC_015683.1\|WP_042891761.1\|1539893_1540808_+\|DUF4439-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NC_015683.1\|WP_013911751.1\|1540902_1542660_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NC_015683.1\|WP_013911740.1\|1528938_1529853_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NC_015683.1\|WP_013911744.1\|1532938_1533931_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NC_015683.1\|WP_014836523.1\|1543496_1544264_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NC_015683.1\|WP_013911738.1\|1526944_1527910_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239116
NC_015683.1\|WP_013911752.1\|1542692_1543430_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NC_015683.1\|WP_042891763.1\|1544358_1545735_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234583

Protein	Function_ID	Function_description	E-value
NC_015683.1\|WP_013911755.1\|1545762_1546878_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	2.86557e-100
NC_015683.1\|WP_013911737.1\|1524033_1526337_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NC_015683.1\|WP_013911743.1\|1531491_1532844_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.54522e-102
NC_015683.1\|WP_013911745.1\|1533923_1534361_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	5.22238e-42
NC_015683.1\|WP_013911741.1\|1529877_1530549_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	4.94093e-64
NC_015683.1\|WP_013911756.1\|1546918_1547482_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.58373e-35
NC_015683.1\|WP_013911742.1\|1530545_1531421_-\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	4.71511e-25
NC_015683.1\|WP_013911748.1\|1538285_1539284_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	3.39156e-171
NC_015683.1\|WP_013242127.1\|1526476_1526746_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.46618e-51
NC_015683.1\|WP_013911747.1\|1537635_1538010_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	1.15508e-20
NC_015683.1\|WP_014836516.1\|1527927_1528926_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.14741e-142
NC_015683.1\|WP_013911749.1\|1539280_1539835_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	1.10898e-39
NC_015683.1\|WP_042891761.1\|1539893_1540808_+\|DUF4439-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	0.00326923
NC_015683.1\|WP_013911751.1\|1540902_1542660_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NC_015683.1\|WP_013911740.1\|1528938_1529853_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	3.44303e-178
NC_015683.1\|WP_013911744.1\|1532938_1533931_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.71952e-46
NC_015683.1\|WP_014836523.1\|1543496_1544264_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	6.25921e-101
NC_015683.1\|WP_013911738.1\|1526944_1527910_-\|nucleoside-hydrolase	gnl\|CDD\|239116	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	2.2294e-129
NC_015683.1\|WP_013911752.1\|1542692_1543430_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	2.54012e-79
NC_015683.1\|WP_042891763.1\|1544358_1545735_+\|hypothetical-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	2.15046e-152

>NC_015683.1|WP_013911745.1|1533923_1534361_-|30S-ribosome-binding-factor-RbfA
MVDHARAARMAKRIQTIVATAIEREIKDYRLEYVTVTDTRVTGDLHDATVYYTVRGRSLEDTPDVEGAAEALHRARGQLRKIVGDQLSVRFTPTLSFELDTVPESSAHMEDLLARAKARDAELAELKKNAKPAGEENPYKMDVDE
>NC_015683.1|WP_013911744.1|1532938_1533931_-|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MNKTRVQTSSDKSLDWSAAERIISKAKRVCVVGHINPDPDAIGSVCATMLALEQLSKEVIGVIGQCTPLERSLLDIPRATDILTVDRLPECDAIIAVDCGAVGRLGALQPQVMRDISRVILIDHHSTNRGFAGVNLIDHQAESTTSILRDWFHHLKITLTKDIAYGLYAGLVSDTGGFRWGRPEMHALAQELVDTGLEIRTIGQQLFSSDSVADLAMIGTILSRLQVVYVNNISVVVAIARYDDVQGHSAQSVEKIADLIRGSDGTDIAVVFKEYKRGEWAVSLRSEDLDISVVARTLGGGGHIRSSGYVTFGTVDHVVAELKAAVQRTC
>NC_015683.1|WP_013911743.1|1531491_1532844_-|MATE-family-efflux-transporter
MSVGRSQEETAEISPATILRLALPALGVLIATPLYLLFDTAIVGRLGAASLAALGAGTTIYAQVTTQLTFLSYGTTARSARLFGAGKKKEAVAEGVQATWLALFVGFILALVVFMGAPTFTFWLSGSYDVSNAATSWLRITAVGIPLVLVVMAGNGWLRGVQNTRLPLLFTLSGVVPGMMLVPILVNQYGLVGSAWANIVGITITSSLFILCLFRAHEGTIRPNWTIMRSQLSLGRDLILRSLSFQISFVSAAAVAGRFGAESLAAHQVLLQLWSFLTLILDSLAIAGQTLTGAALGAHNVARARRVGHISVLYSTMFSVVLAVIFAGGFHVIPGIFTSDAGVLQEISGPWWQLVFMIVIGGVVFGFDGVFLGAADAAYLRTVSLLSVLVGFLPGVWLALLFDVGLVGVWWGLVSFISIRMVVGIWRFYSMKWAYSKDSEDGNIPTPESR
>NC_015683.1|WP_013911742.1|1530545_1531421_-|metallophosphoesterase
MAQTLWAVADLHAAVRANGEHIDSLKPKDPSDWLIVAGDVAERTSVVVEVLHKLRKQFACVIWVPGNHELFCRKTDTHQGRAKYDELVRACRKIDVLTPEDPFPVFGGVTIVPLFTLYDYSFRPSGMSIEQAVEAAHEKQIVLTDQFAIAPFVDIRAWCWDRLAYSVNRLSRVNGPTILINHWPLSQEPVDRMQIPEIGLWCGTRHTMSWGSRYSAQAVIYGHLHLPGIMRIDGVPHVEVSLGYPRQWQQNIESRPWPFPIMHIDDAGKATMGPGLEPDAPISQRVNKGES
>NC_015683.1|WP_013911741.1|1529877_1530549_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MNNEIQLDQSLFPEAARYVSLTTDPGIIDLGKFNELHPLERALVAHAVPLRKAEFGDARWCAHQALAKLQRDTGEPILRGERGMPLWPASVSGSLTHTDGFRAAVVAPRLLIRSMGIDAEVAEPLPEGVIGSIAREGELEQLERLRSNGISCADRVLFCAKEATYKVWFPLTHRWLGFEQAEIDIRDDGSFVSYLLVRPTPVPFIEGRWMVKNGYVIAVTSVV
>NC_015683.1|WP_013911740.1|1528938_1529853_+|tRNA-pseudouridine(55)-synthase-TruB
MIDPLSTSGLVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVASTKSYRATIRLGMSTTTDDKEGEAVFAADTSTVSAMITDDEIAAEIAKLTGNIMQRPASVSAIKINGKRAHQMVREGQEVEIPARPVTIYRFDVLDISRALSPEFIDIDVEVTCSSGTYIRSLARDLGEALHVGGHLTALRRLSVGPFTLSDAITLDDLATAPKLSLSLDESLTRCYPTLEITESEATDLSMGKWLQPRGLTEVHAAVAPNGHAIALIKEKGKRLSSVFVARPNTLS
>NC_015683.1|WP_014836516.1|1527927_1528926_-|bifunctional-riboflavin-kinase/FAD-synthetase
MAKLSRVDIWHHIEDIPADLDASVITIGVFDGVHRGHRTLISAATQRARALGVPSILVTFNPHPLAVLRPEKMPPLLGTVTQRANLVENLGVDHMFAMNFTANLSHLSPEDFFVSIIKDKLKAKVVVVGENFTFGYKASGTTETLKALGEKYGIDIRVLELLAEDQTVVSSSVIRKALAEGDVRRANWGLGREFSVSGDVVRGAGRGGKELGYPTANLYFPDSIALPEDGVYAGWLQITSAAPIDGDMVAGVRYPAAISVGHNPTFGDQRRSVESFVLNRRADLYGHSVTVEFVDRIRGMVKFNGMEELLEAIAQDVETTREILRVDEPRKP
>NC_015683.1|WP_013911738.1|1526944_1527910_-|nucleoside-hydrolase
MAKKVILDLDTGIDDALALAYALGSPELDLIGVTATYGNVLVDDGARNDLALLELFGRPDIPVFVGEPHARAKDKFSVLEISEFIHGKNGIGEAKIQQPQSCVSDKTAVDFLIESVATYGDDLVIIPTGAMTNIAAAMDKDPDFAANAHIVFMGGALTVPGNVSTWAEANINQDPEAADMMVRECADVTMIGLDVTLQTLLTYEETAMWRALNTEAATVLADATDYYIRAYDAIAPHLGGCGLHDPLAVAVAVDPSLVTALPLNLKVDTEGPTRGRTIGNEVKLGDPHKNARVAVAVDVERFLKEFMERITRVLVGNAIGR
>NC_015683.1|WP_013242127.1|1526476_1526746_-|30S-ribosomal-protein-S15
MALSNEQKKSILAEYGLHETDTGSPEAQVALLSARINQLTEHLKFHKHDHHSRRGLLLLVGRRKGLLKYLADNNVDRYRDLIARLGLRR
>NC_015683.1|WP_013911737.1|1524033_1526337_-|polyribonucleotide-nucleotidyltransferase
MTVVRRNIHEETCTLSKAKNIEFNVDEEFGITEAIATIDNGDFGTRTIRFETGQLAKQADGSVTTYLDDETMLLATTTASNQPREGFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSMNPEDYYDVVAINGASAATQLSGLPVSGAVGGVRMALIADEAHPKGQWIAFPTHEQHEKALFELVVAGRLVAKKQGRKTVEDVAIMMVEAGATENVVEKIKDGAPAPTEEIVAQGLEAAKPFIEVLCRAQAGLAERAAKETQEFPLFPPYSDVIYDAVEKKVSKKLRQLLTIKSKQERDDATNDYMESIEGELLAKFGSEDEAAASKAIRAAYNAVMKKLVRHMILTEHFRIDGRGVTDIRDLGVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQQIDSLSPTSSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALMPVIPSREEFPYTIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTRDFVTALQLDTKLDGIPSKVLASALAQAYEAREAILDTMAEVIESPDAMSDYAPRITTVTVPVSKIGEVIGPKGKTINSITEETGANISIEEDGTVYVSATSGAAAEAAIEKINAIANPQLPKVGERFLGTIVKTTAFGAFVSLVPGRDGLIHISKLGNGKRIEKVEDVVNVGDKVEVEILDIDNRGKISLAPVKED
>NC_015683.1|WP_013911747.1|1537635_1538010_-|YlxR-family-protein
MPAALYGDSPRGDLSKPTRTRIRTCIATKKSQPADQLLRVVLRKKDDVAGESHHSVYSVIADPRRRLQGRGAWITPTIDALELAEKRRAFARALRVSAEVDTGHVREYLAALGAGPDITRKTEH
>NC_015683.1|WP_013911748.1|1538285_1539284_-|transcription-termination/antitermination-protein-NusA
MNIDIHALKLIESERKVPVEELIETIARALLFSYREFKDTNVEENTRARVDISATTGLVSVIVSELDEEGNVVSEYDDTPANFGRVGAQAVRDAIKKRLREAETWKAYDAYSEYEGRVVSGIVQADAYANERGIIVVHLGTEAEGQDGILIPAEQIPGEKLVHGNRVKCYVVGVNRTPRNLQINLSRTHPELVRRLFELEIPEVADGSVEIISIAREAGHRSKVAVRANIKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDEDPAKYVGNALAPSKVVHVEITDLEAQAAKVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDAS
>NC_015683.1|WP_013911749.1|1539280_1539835_-|ribosome-maturation-factor-RimP
MAFPSTEVLTELITPIAAAHNMDLEHVRVNRAGKKTLVAVSLDSDNRPDLDQLEVVSTAISELFDAQEASGALSFGPGYTLEVGTPGVDAPLTKPRQWRRNRHRLVALDVEGKKSIERIGAVNDDETRVIVVKRQGKKISIRSIELGENTQAVVEIEFAKPAEAELEFTQLDFDAALALEEENK
>NC_015683.1|WP_042891761.1|1539893_1540808_+|DUF4439-domain-containing-protein
MTRSAASRFLLAVVVFGGMLSACSLTPHPTPDTTLTRLAARASAEAKTFDSSDSPYAALRRADLAELRTEIQRVCGHKNDGTLPSSCDDSALDSAIEKAHLDVDNNSNPADAATIAAQEIVSSAGELPEGSMLLAANQLVDLVSAGAAAPTTGGALFDPSVNKKLKSSDLKVDADAARDALAWEYSIVYGLGVATASASGLLKQAVNDSIDAHQNRISILQSSLAPTGNFPKPESAYELKKYQQPFDAQSTADYIEALRKDTTDYWIATAATAKTTSWKELALAFAAQTAVGAPTAPANVLPAR
>NC_015683.1|WP_013911751.1|1540902_1542660_-|proline--tRNA-ligase
MITRLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRAAPGVYTWLPLGLRTLKKIENIVREEMDGIGAQELLFPALLPREPYQTTNRWTEYGDSLFRLKDRKGADYLLGPTHEEMFAGAVKDMYSSYKDFPVILYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMTDEGLESSYQRHRGAYQRILDRLGVEYAICSATSGAMGGSASEEFLAISENGEDTFVRATQGDYAANVEAVITQPGVERSLEGLPEAMEYDTPAAETIESLVAWAQAAGVTVEGREVVASDTLKCIVVKITEPGAEDHELAGILLPGDREVDMKRLEASLEPAAVELATEADFKANPFLVKGYVGPRALIAHDVKLFADPRVVTGTSWITGADADQRHVVNLTVGRDFEVENYIEAAEVREGDPAPEGQGTLTLARGIEVGHIFQLGRKYTEAFDVQILDENGKRAIPTMGSYGIGVSRLMAVLAEQRHDEKGLNWPIEVAPFAVHVVVANKDAAAIEAGDALVSELDAAGIEVLFDDRPKVSPGVKFKDAELLGMPYVVVLGRSFKEGKVELRVRGTEAVEIPATEATARIIEMVGA
>NC_015683.1|WP_013911752.1|1542692_1543430_+|peroxide-stress-protein-YaaA
MLIVLPPSETKAIGGDDAPLNMDALSFPSLNPIRKSISKDLSSLSPDQALTMLKLSEKLREEVAANTQLLHAPTMPAILRYTGVLYDALDAPTLPRSAWSRLAIGSALFGVVGASDPIPRYRLSGSSKVPNADGTIPTMKKRWGSAITTALSNADDFIVDLRSGTYQQLGKVPGATTVRVESVQPNGVRKVISHFNKHYKGELARVLALSDASPSSIEEVQKVAQKAGLAIEQTGTTELTFEVRN
>NC_015683.1|WP_014836523.1|1543496_1544264_-|uroporphyrinogen-III-C-methyltransferase
MTSQQNQWQAPVALIGGGPGAWDLITVRGMRRLQTADVILADHLGPASELDKLCDVTTKEIIDVSKLPYGRQVAQSKINELLIHHAQLGKRVARLKGGDPYIFGRGFEELQACAEQGISCEVIPGVTSAVSVPALAGIPITQRGLVHSFTVVSGHVPPQHPESLNNWSALAQTQGTLSVIMGVKNAPAIADALIEGGRPASTPVVIIQEGATEQQRSYKCTLGTLANTMRTQEIKPPAVYVIGEVAGLDAQPAHT
>NC_015683.1|WP_042891763.1|1544358_1545735_+|hypothetical-protein
MSHPTFLHTFAEQLPGLAVAHHPSTCLDPQLVVFNDEVGAALGITRENIYDLLHAKGHAQAYSGHQFGNFVPLLGDGRALLVGELRADRALCRETSGAPLLYDVHLKGSGPTDFSRGGDGRAVLGPMLREYLISESLHALGVPSSRSLAVITTGETVMRGRPQPGAILVRVAPNHMRVGTLQYATLNGPEILRDTVRYASHRILTQPSDNELENARELLHQAVLSQAHLVAQWMRFGFVHGVMNTDNTTLSGYSIDFGPCAFMDTFNPQTVFSSIDQGGRYAYGQQPAIAGWNLARMAETLLPFIGMDAAREEIDSFASYYRTAWLEEMAQAVGVDPHSSGAEDLLDTLPELLTRHTADLTTFLRSLSDGTTQQKFPWANDWCTARDLCGAVPPHNPVYIPRNHLVEEALLHAERGDLSRFQRLFAATTAPFDRIDDSEDLEQPAPQDAAPYITYCGT
>NC_015683.1|WP_013911755.1|1545762_1546878_-|GTP-binding-protein
MSFSSTPVTVLSGFLGSGKTTLLNDLLGNREGRKIAVIVNDFSEINIDAALIAGEGHLERGEDRFIELTNGCICCTLRDDLVESVGSLARSGDYDHIVIESTGISEPMPVAATFEWEWEDGTRLADVAPIDTMATLVDATQFLDYMSKKTYLVDRDLGATPEDDRTIADLLVDQVEFADRVYVTKADLVPAERYEATAALVHRMNPRASVEKLIDGRVIPEKGEPRSAISDLLGAMAYDEATARTYQGYMDELTNPHTPETEEYGISSVVFRGDRPFDRERLIQALHSISGLVRSKGHCWVSDRIDMVQVWHQAGPDLRIVPAGYWQQAGMEPSNEIVLIGVHFDREDAVRKLSQAMLNDTETMLLLAQRT
>NC_015683.1|WP_013911756.1|1546918_1547482_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MHASEKPQALTLTTPDGPLSIIGHDGFVLASGWTEDSAALASLVHKEFALGTGGQGIDHVGLDDAHPVLRDASAAVSAYYAGDLDAIKQIPVKQRSGPFRMRAWDVLREVQPGETLTYTEYAIRCGNEKAARAAASACAMNAAALFVPCHRIVRSDGTLGGFRYGITIKESLLKRESRIISNEDPAQ

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Crispr_ID: NC_015683_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015683_4

2018736-2020718

Orphan

I-C,I-E,II-B

Consensus_repeat	Method
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CRISPRCasFinder
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CRT
GGAACTACCTCCGCATACGCGGAGAAAAG	PILER-CR

32 spacers

DinG

The CRISPR arrays of NC_015683_4

>merge|NC_015683|4|2018736-2020718|CRISPRCasFinder,CRT,PILER-CR
CTTTTCTCCGCGTATGCGGAGGTAGTTCGAGTTTGTGGGGGCTGCGTTTCGTGAGGCCCCTCTTTTCTCCGCGTATGCGGAGGTAGTTCCTTCATCCGAGGGGGCTCACCATCGCGCATGAACTTTTCTCCGCGTATGCGGAGGTAGTTCCGGGCCTACGGCTTTGCGTCTGGCCCAGATGATCTTTTCTCCGCGTATGCGGAGGTAGTTCCCTCCCTGCTCTACGACATCGGGCATATCCCCGGCTTTTCTCCGCGTATGCGGAGGTAGTTCCTGCTCGCTCGTGGCCACCCTTACCGCGCACTCCTTTTCTCCGCGTATGCGGAGGTAGTTCCGAGCAGCCACGGTTTATATCTCGCTCCGATGGCTTTTCTCCGCGTATGCGGAGGTAGTTCCAAGGTTTTTCACGGTTTCGGAATCCGCCATTTCTTTTCTCCGCGTATGCGGAGGTAGTTCCGACTCCGCATCCTCCGGAGCAGGCAATGCAGCCTTTTCTCCGCGTATGCGGAGGTAGTTCCTTCACCATTCTGATGCCGGTTTTCGCGGTTTGCTTTTCTCCGCGTATGCGGAGGTAGTTCCAGTGTTTTCTAGGATGAAAATGACCTACCATACTTTTCTCCGCGTATGCGGAGGTAGTTCCCGCTGCGCTCGGCTACAATGCTGGCGCTAGCGCTTTTCTCCGCGTATGCGGAGGTAGTTCCGCCCCTGACTATCTCAGGGCATGGAAGGCATGCTTTTCTCCGCGTATGCGGAGGTAGTTCCAAAGCTCCAGCCAAGAAAGGTATGCCAGTAGACTTTTCTCCGCGTATGCGGAGGTAGTTCCAGGTTCCCAAATCTTTTATTGTTCCTGATTTACTTTTCTCCGCGTATGCGGAGGTAGTTCCCCCATGCACAGTGACGGGGTGGATAAAAAAAGACTTTTCTCCGCGTATGCGGAGGTAGTTCCTCGTGTGTTTCTTTGCGGTTGTCCAAGAAAATCTTTTCTCCGCGTATGCGGAGGTAGTTCCAGAATCTATTCCCCTTCTTGGGCGAAGTTTGTCTTTTCTCCGCGTATGCGGAGGTAGTTCCATCTGGGGCAACTGCTTTGATGTGGAAATCAGCTTTTCTCCGCGTATGCGGAGGTAGTTCCTCCCCGTGAGATCGAGCGAGCTTGTTTAAAAACTTTTCTCCGCGTATGCGGAGGTAGTTCCCGCCCAACCCCACTCCTCACGGACCGTGGGGCCTTTTCTCCGCGTATGCGGAGGTAGTTCCACAAAACATAACCCGCATCACACAGGCGGGAACTTTTCTCCGCGTATGCGGAGGTAGTTCCTCGCTGAGCGGGTGAAATCCGGTGGCACGCTGCTTTTCTCCGCGTATGCGGAGGTAGTTCCCATCACCCCCGAACTCGCACAATACGCATTCGCTTTTCTCCGCGTATGCGGAGGTAGTTCCCTGCAAAACCCAACCAGCAACCGCCGCCAGTGCTTTTCTCCGCGTATGCGGAGGTAGTTCCCCTGCTCGGGCACAAAGAATATTCCGGCGCTGCTTTTCTCCGCGTATGCGGAGGTAGTTCCAGCAAATTAGGGGCAATCCGGGACCTCTACCCCTTTTCTCCGCGTATGCGGAGGTAGTTCCGATTTATTTGGTGAGGGAGTGATGCGCAGTGACTTTTCTCCGCGTATGCGGAGGTAGTTCCATTGAGGCTTATGGTAGGCATCTGACTGCGGGCTTTTCTCCGCGTATGCGGAGGTAGTTCCTCTCTACACATGGTGTAACGGGCCAATGCACACTTTTCTCCGCGTATGCGGAGGTAGTTCCACCCGGTGCGTGGGCAAAACCCCGCCCCGTCGCTTTTCTCCGCGTATGCGGAGGTAGTTCCCTACAAACTTTTCTGCAAACGCCACCTCCTCACTTTTCTCCGCGTATGCGGAGGTAGTTCCATCATTGCCCAGCTCACGAGCACGCTCGGCGGCTTTTCTCCGCGTATGCGGAAAGTAAGCC

>NC_015683|4|4|2018736-2020718|CRISPRCasFinder
CTTTTCTCCGCGTATGCGGAGGTAGTTCG	AGTTTGTGGGGGCTGCGTTTCGTGAGGCCCCT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TTCATCCGAGGGGGCTCACCATCGCGCATGAA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GGGCCTACGGCTTTGCGTCTGGCCCAGATGAT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTCCCTGCTCTACGACATCGGGCATATCCCCGG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TGCTCGCTCGTGGCCACCCTTACCGCGCACTC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GAGCAGCCACGGTTTATATCTCGCTCCGATGG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AAGGTTTTTCACGGTTTCGGAATCCGCCATTT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GACTCCGCATCCTCCGGAGCAGGCAATGCAGC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TTCACCATTCTGATGCCGGTTTTCGCGGTTTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGTGTTTTCTAGGATGAAAATGACCTACCATA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CGCTGCGCTCGGCTACAATGCTGGCGCTAGCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GCCCCTGACTATCTCAGGGCATGGAAGGCATG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AAAGCTCCAGCCAAGAAAGGTATGCCAGTAGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGGTTCCCAAATCTTTTATTGTTCCTGATTTA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CCCATGCACAGTGACGGGGTGGATAAAAAAAGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCGTGTGTTTCTTTGCGGTTGTCCAAGAAAAT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGAATCTATTCCCCTTCTTGGGCGAAGTTTGT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATCTGGGGCAACTGCTTTGATGTGGAAATCAG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCCCCGTGAGATCGAGCGAGCTTGTTTAAAAA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CGCCCAACCCCACTCCTCACGGACCGTGGGGC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ACAAAACATAACCCGCATCACACAGGCGGGAA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCGCTGAGCGGGTGAAATCCGGTGGCACGCTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CATCACCCCCGAACTCGCACAATACGCATTCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTGCAAAACCCAACCAGCAACCGCCGCCAGTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CCTGCTCGGGCACAAAGAATATTCCGGCGCTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGCAAATTAGGGGCAATCCGGGACCTCTACCC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GATTTATTTGGTGAGGGAGTGATGCGCAGTGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATTGAGGCTTATGGTAGGCATCTGACTGCGGG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCTCTACACATGGTGTAACGGGCCAATGCACA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTACAAACTTTTCTGCAAACGCCACCTCCTCA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATCATTGCCCAGCTCACGAGCACGCTCGGCGG
CTTTTCTCCGCGTATGCGGAAAGTAAGCC

>NC_015683|4|3|2018736-2020718|CRT
CTTTTCTCCGCGTATGCGGAGGTAGTTCG	AGTTTGTGGGGGCTGCGTTTCGTGAGGCCCCT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TTCATCCGAGGGGGCTCACCATCGCGCATGAA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GGGCCTACGGCTTTGCGTCTGGCCCAGATGAT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTCCCTGCTCTACGACATCGGGCATATCCCCGG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TGCTCGCTCGTGGCCACCCTTACCGCGCACTC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GAGCAGCCACGGTTTATATCTCGCTCCGATGG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AAGGTTTTTCACGGTTTCGGAATCCGCCATTT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GACTCCGCATCCTCCGGAGCAGGCAATGCAGC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TTCACCATTCTGATGCCGGTTTTCGCGGTTTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGTGTTTTCTAGGATGAAAATGACCTACCATA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CGCTGCGCTCGGCTACAATGCTGGCGCTAGCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GCCCCTGACTATCTCAGGGCATGGAAGGCATG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AAAGCTCCAGCCAAGAAAGGTATGCCAGTAGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGGTTCCCAAATCTTTTATTGTTCCTGATTTA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CCCATGCACAGTGACGGGGTGGATAAAAAAAGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCGTGTGTTTCTTTGCGGTTGTCCAAGAAAAT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGAATCTATTCCCCTTCTTGGGCGAAGTTTGT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATCTGGGGCAACTGCTTTGATGTGGAAATCAG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCCCCGTGAGATCGAGCGAGCTTGTTTAAAAA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CGCCCAACCCCACTCCTCACGGACCGTGGGGC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ACAAAACATAACCCGCATCACACAGGCGGGAA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCGCTGAGCGGGTGAAATCCGGTGGCACGCTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CATCACCCCCGAACTCGCACAATACGCATTCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTGCAAAACCCAACCAGCAACCGCCGCCAGTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CCTGCTCGGGCACAAAGAATATTCCGGCGCTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGCAAATTAGGGGCAATCCGGGACCTCTACCC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GATTTATTTGGTGAGGGAGTGATGCGCAGTGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATTGAGGCTTATGGTAGGCATCTGACTGCGGG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCTCTACACATGGTGTAACGGGCCAATGCACA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTACAAACTTTTCTGCAAACGCCACCTCCTCA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATCATTGCCCAGCTCACGAGCACGCTCGGCGG
CTTTTCTCCGCGTATGCGGAAAGTAAGCC

>NC_015683|4|5|2018858-2020657|PILER-CR
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GGGCCTACGGCTTTGCGTCTGGCCCAGATGAT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTCCCTGCTCTACGACATCGGGCATATCCCCGG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TGCTCGCTCGTGGCCACCCTTACCGCGCACTC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GAGCAGCCACGGTTTATATCTCGCTCCGATGG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AAGGTTTTTCACGGTTTCGGAATCCGCCATTT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GACTCCGCATCCTCCGGAGCAGGCAATGCAGC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TTCACCATTCTGATGCCGGTTTTCGCGGTTTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGTGTTTTCTAGGATGAAAATGACCTACCATA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CGCTGCGCTCGGCTACAATGCTGGCGCTAGCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GCCCCTGACTATCTCAGGGCATGGAAGGCATG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AAAGCTCCAGCCAAGAAAGGTATGCCAGTAGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGGTTCCCAAATCTTTTATTGTTCCTGATTTA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CCCATGCACAGTGACGGGGTGGATAAAAAAAGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCGTGTGTTTCTTTGCGGTTGTCCAAGAAAAT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGAATCTATTCCCCTTCTTGGGCGAAGTTTGT
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATCTGGGGCAACTGCTTTGATGTGGAAATCAG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCCCCGTGAGATCGAGCGAGCTTGTTTAAAAA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CGCCCAACCCCACTCCTCACGGACCGTGGGGC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ACAAAACATAACCCGCATCACACAGGCGGGAA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCGCTGAGCGGGTGAAATCCGGTGGCACGCTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CATCACCCCCGAACTCGCACAATACGCATTCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTGCAAAACCCAACCAGCAACCGCCGCCAGTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CCTGCTCGGGCACAAAGAATATTCCGGCGCTG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	AGCAAATTAGGGGCAATCCGGGACCTCTACCC
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	GATTTATTTGGTGAGGGAGTGATGCGCAGTGA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ATTGAGGCTTATGGTAGGCATCTGACTGCGGG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	TCTCTACACATGGTGTAACGGGCCAATGCACA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG
CTTTTCTCCGCGTATGCGGAGGTAGTTCC	CTACAAACTTTTCTGCAAACGCCACCTCCTCA
CTTTTCTCCGCGTATGCGGAGGTAGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015683.1\|WP_013912187.1\|2014667_2016632_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_015683.1\|WP_013912186.1\|2013245_2014601_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NC_015683.1\|WP_013912198.1\|2030334_2031165_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NC_015683.1\|WP_013912191.1\|2021742_2022087_+\|hypothetical-protein	unknown	unknown	unknown
NC_015683.1\|WP_041477187.1\|2011200_2012019_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_015683.1\|WP_013912192.1\|2022229_2023951_-\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238832
NC_015683.1\|WP_003852698.1\|2029977_2030100_-\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179138
NC_015683.1\|WP_013912196.1\|2026396_2028556_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236179
NC_015683.1\|WP_013912184.1\|2012104_2012641_-\|DUF2017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378185
NC_015683.1\|WP_032802901.1\|2012740_2013040_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_015683.1\|WP_013912188.1\|2016653_2017118_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_015683.1\|WP_041477185.1\|2010240_2011134_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NC_015683.1\|WP_013912181.1\|2009400_2010168_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NC_015683.1\|WP_013912190.1\|2020873_2021176_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377122
NC_015683.1\|WP_013912189.1\|2017150_2018428_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_015683.1\|WP_013912197.1\|2028705_2029143_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179603
NC_015683.1\|WP_013912180.1\|2008627_2009362_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NC_015683.1\|WP_042891633.1\|2025844_2026330_+\|ferritin	unknown	unknown	gnl\|CDD\|153113
NC_015683.1\|WP_013242528.1\|2029269_2029503_-\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|131249
NC_015683.1\|WP_013912194.1\|2024418_2025405_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027

Protein	Function_ID	Function_description	E-value
NC_015683.1\|WP_013912187.1\|2014667_2016632_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	5.89064e-153
NC_015683.1\|WP_013912186.1\|2013245_2014601_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NC_015683.1\|WP_013912198.1\|2030334_2031165_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	5.0172e-169
NC_015683.1\|WP_003852698.1\|2029977_2030100_-\|50S-ribosomal-protein-L36	gnl\|CDD\|179138	PRK00831, rpmJ, 50S ribosomal protein L36; Validated.	1.69298e-09
NC_015683.1\|WP_041477187.1\|2011200_2012019_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	3.30729e-23
NC_015683.1\|WP_013912192.1\|2022229_2023951_-\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238832	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.	0
NC_015683.1\|WP_013912196.1\|2026396_2028556_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236179	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NC_015683.1\|WP_013912184.1\|2012104_2012641_-\|DUF2017-domain-containing-protein	gnl\|CDD\|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	4.83857e-73
NC_015683.1\|WP_032802901.1\|2012740_2013040_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	7.46567e-37
NC_015683.1\|WP_013912188.1\|2016653_2017118_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.40613e-28
NC_015683.1\|WP_041477185.1\|2010240_2011134_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	6.48439e-133
NC_015683.1\|WP_013912181.1\|2009400_2010168_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	8.33346e-76
NC_015683.1\|WP_013912190.1\|2020873_2021176_+\|hypothetical-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	0.00172344
NC_015683.1\|WP_013912189.1\|2017150_2018428_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.19553e-94
NC_015683.1\|WP_013912197.1\|2028705_2029143_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	1.61162e-75
NC_015683.1\|WP_013912180.1\|2008627_2009362_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	5.44395e-164
NC_015683.1\|WP_042891633.1\|2025844_2026330_+\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	4.06333e-58
NC_015683.1\|WP_013242528.1\|2029269_2029503_-\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	1.51252e-32
NC_015683.1\|WP_013912194.1\|2024418_2025405_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0

>NC_015683.1|WP_013912189.1|2017150_2018428_-|phosphoserine-phosphatase-SerB
MIELDQPQVTVSLRPELTPAVITISGQDRQGVSAAAFRVLAANGVQILDVEQSQFRGFLGLAVFAGVEAAGVETLEIGLKETLKTYGQSVKIELQEVAQSSRPRSTHEVVILGDPVEAHDLSRIAQTLANFDANIDTIRGISDYPVTGLELKITVANRELGAAMPLRKALAELTTELGVDIAIERAGLLRRSKRLICFDCDSTLITGEVIEMLAAHAGREKEVAEVTERAMRGELDFEESLRERVKALAGLDASVIGEVADSIELTPGARTTIRTLKRLGYKTAVVSGGFIQVLEGLAEDLGLDYVRANTLEIVDGKLTGRVIGKVVDRAAKAEFLEEFARESGIEMHQTVAVGDGANDIDMISAAGLGIAFNAKPALREIADTSVNSPFLDEVVHMLGITRADIDAADDSDGKIRRVPLPQQKN
>NC_015683.1|WP_013912188.1|2016653_2017118_+|GNAT-family-N-acetyltransferase
MAHIPTLRNESIRLRPLVLSDAHDLTATCVDPLTQKYTTIPAGYTLANAEEFITTEHDNLRWVITTRTSDRFCGQIELRPLVGEHNAMDVGYMTAPWARGQGLMTSALLLAVDYALSLGVHRIELRTDPQNKASQRVAEKAGFLYQGLHNDFTV
>NC_015683.1|WP_013912187.1|2014667_2016632_+|ATP-dependent-DNA-helicase
MSDSPLALSTDELLDAAVAALGGSRRNGQVSMANAVTKALESERHLAVQAGTGTGKSLAYLVPALRHAQATDSTIIVSTATIALQRQLVERDLPRLADALEPHMSRRPTFAIMKGRANYVCMNKIAAAEEPEDALIDEEDLSWLGKHVARIYEWANETEVGDRDSLDPGVPDLAWRQVSVSAQECIGASRCPHGEDCFAEIARKKAHDVDVIVTNHALLAIDALSDVNVLPEHEVVIVDEAHELDGRITAVATNEIGVTALTMSSRRAGKLGAGDKDQKLIDISKEWEDAMLAVEPGRLTSLPESLKQQTIALRDAIWSLREHVSRVPEGEVANDPERHAERMSLSNHLGDQHDSVVRILSVFEEEDAASQEDVVWVLHDDRRGVMIKVAPLSIAGLLHARLFSENTVVLASATLNIGGNFNAMAASWGLPKGSWDSLDAGTPFDPAKSGILYTPNSLPDPGRDGLSPEVIDEIYDLIMAAGGRTLGLFSSRRAAQQATEAMRTRLPFDVLCQGDDTTGALVEKFSKQENTCLFGTLSLWQGVDVPGKACSLVIIDRIPFPRPDDPLLQARKDAADAEGRNGFMEVAATHAALLIAQGAGRLLRSVTDRGVVAILDRRIVTKRYGAFFIKSLPAFWRTNDPQVVRGALARLVAK
>NC_015683.1|WP_013912186.1|2013245_2014601_+|nicotinate-phosphoribosyltransferase
MTCASALIVFKAKLVCVTEFESTALLTDMYELTMLQSALADGTAYRNCTFEVFSRRLPNERRYGVVAGTARVLEAIKRYRFTEKQLASLTFLDATTIDFLRSYEFKGQIDGYREGELYFPSSPILTIRGTFAECVILETLILSIMNADSAVASAAARMVTAADGRPIFEMGSRRTHEYAAVTAARAAYLAGFVGTSNLEAVYRYGIPGSGTAAHAWTLLHVNDDGTPNEPAAFQSQINVLGVGTTLLVDTYDIAKGVKTAIEIAGPQLGAVRIDSGDLGVMTRKVRQELDSLGAHNTGIVVSSDLDEYAIAGLRGNPVDAFGVGTSVVTGSGAPTAGMVYKLVEVDGHPVAKRSRGKAMVGGTKRAVRTHRATGTAVEEIVFPYDHETPQIGQLNSYELTIPLMRNGIVVDNLPTLEESRVYLAEQLITLPWEGLALSKDEPVLSTRFIGF
>NC_015683.1|WP_032802901.1|2012740_2013040_-|ATP-dependent-Clp-protease-adapter-ClpS
MSSPMATPELDEDLSVDVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKRRAIELMMQVHTEGKAVVSSGERDKVEGDVKKLHTAGLWATMQQGG
>NC_015683.1|WP_013912184.1|2012104_2012641_-|DUF2017-domain-containing-protein
MQPWKKKKGLMRGAHFVCVFEPMEREVLGNLASTVSEALIHRAQTAPKDELAELTGMPSGHKEAPTDPALARLLPDFEKEGDEEFEGDNSLLRCLHETDITRAKVEHLQVLGQALGPDGGVHVDITEPEAHAWVAALNDIRLYVASGEVFGEEAEQDRDNLVEWLAYNQESLLNAMMG
>NC_015683.1|WP_041477187.1|2011200_2012019_-|rhomboid-family-intramembrane-serine-protease
MELRDFFTRLCFIMTNRFNPYAQSDRNTYGGVSTSGGYLPHEYGAQYLPTPGYSADRVTQRGVNTSSWRSMGRKRLVDATVLTLGYVVIIWAVHIVNTVFFGGTLAQGLGVHPLDGASIWHIFTSPLVHGNYMHLSANTLPGLIFVFLIGLSGRRAFWEVTMIAAVVGGMGTWIFGGIGTTHIGASGLIYGWLAYLVVRGIFNRSFSQVLLGMVLAFIYGGLIWGVLPGDVGVSWQAHLFGAIGGLIAGATITSDDPPALKARREQRALERS
>NC_015683.1|WP_041477185.1|2010240_2011134_-|glutamate-racemase
MDYVIQDHKSDSLKTEVPGVEPSIVYEGTIDASSPIGIFDSGVGGLTVARAIMEQLPQESVIYIGDTAHSPYGPKPIAQVRELSMRIGDELVARGCKMIVIACNTATSAALRDLRERYSIPVVGVILPAVRRAVATTRNGKIGVLGTQGTIASGAYQELFAASPGVDVYAQACPSFVSFVERGITSGRQILGVAQGYTEGLQAAGVDTLVLGCTHYPLLTGVIQLAVGDNVTLISSSEECVKDVLKTLSRNDMLADAATDKQPIRSFESTGDPALFEQLAMRFLGPHVTHVEKLREV
>NC_015683.1|WP_013912181.1|2009400_2010168_-|MBL-fold-metallo-hydrolase
MKLTILGSSGSLGAPDNAASGYLIQMDNAPSILMDMGPGVLAQLERVQNPSDAHVVFSHLHADHCVDFPSLLVWRRYHPTAAAKGRNLCFGPTDTPIRMGRLSADSVDNIDDMSDTFAFTPWENAQEELVGAVSITPYSVIHPIETFALRVEHKRSGKIIAYSGDSSYTENLIECARNADVFLCEATWGETSEGKAPNMHMSGAEAGRIARLAGVKRLVLVHIPPWGNAEAALEKARSEYDGPIDISYQGMEINI
>NC_015683.1|WP_013912180.1|2008627_2009362_-|ribonuclease-PH
MTTSNFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQADGGTRTASITGAYVALADAIAHLQEQGVVPGNPLKDPVAAVSVGVIDGTVCLDLPYEEDSRADVDMNVIMQSGRFVEIQGTGEHNTFDRDELARILDFAEKGCAELVEVQKAVLGIA
>NC_015683.1|WP_013912190.1|2020873_2021176_+|hypothetical-protein
MNTYQKIKEKTGGKIYLGVGLQPGNQDEIAIEACYIEALIDYGYLDVELKKEFLKLWLTDDMYDDLSDLDSIELKTYRNLLKYAGMQPRVDTSVFRPEPA
>NC_015683.1|WP_013912191.1|2021742_2022087_+|hypothetical-protein
MHLQTTVTRVLITTTIALSFALASTSTLAHAETKSVPIACQELQADVEAWTKQLKEAESSHDQLSKNGHSKDAIKRYLERSQQYFQECVSSPPKHLHFELSSALPMFMSNLSSS
>NC_015683.1|WP_013912192.1|2022229_2023951_-|cytochrome-c-oxidase-subunit-I
MTAVAPRLENYSEPTRPAPTGGARKGTLAWKMLTTTDHKQLGIMYIIMSFVFFFLGGLMALLIRAELFSPGLQYLSNEQFNQLFTMHGTVMLLLFGTPIVWGFANYILPLQIGAPDVAFPRLNAFGFWVTMIGAAAMLSGFLTPGGAADFGWTMYLPLADSIHSPGIGSDMWIVGVGATGVGTISSAINMITTILCMRAPGMTMFRMPIFCWNIFVASVLVLMIFPLLTAAALGVLYDRKLGGHLFDPGNGGAIMWQHLFWFFGHPEVYVLALPFFGIVSEIIPVFARKPMFGYIGLVFATLSIGSLSMAVWAHHMFVTGAILLPFFSFMTFLISVPTGVKFFNWLGTMWKGHVSWETPMTWTMGFLVTFLFGGLTGIMLASPPLDFHISDTYFVVAHFHYTLFGTVVFASFAGVYFWFPKMTGRMLDERLGKIHFWITFVGFHGTFLVQHWLGNEGMPRRYADYLDSDGFTTLNQISTIFSFLLGMSVLPFIWNVIKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTSLPRIRSERPAFELHYPHMVERMRREAHVGHHAEPVTKKTS
>NC_015683.1|WP_013912194.1|2024418_2025405_-|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MESYDSYLESHKKPVSAINWNSIPDEKDLEVWDRLTGNFWLPEKVPVSNDLKSWGTLNDLEKTTTMRVFTGLTMLDTIQGTVGAVSMIPDAITPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIVLSYYEGADPLKRKVASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQQAVRQQTPERQAELKEYTFDLLYDLYDNEIQYTEDLYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPADECKVSPAILSALSPNADENHDFFSGSGSSYVIGKAENTTDDDWDF
>NC_015683.1|WP_042891633.1|2025844_2026330_+|ferritin
MSINEKLAAALNNQITAELEASMVYLQLSYILDDLSLTGMHNWMQAQHKEELDHAAQFSKHLLDRDYRPQIGDIAPPKLDANSAIEAFEASLAHEQKVTAMIRELAEIADSVKDYDSRPLIDRFLEEQIEEEATVKEILDRLRIADTGSGILRIDAELAAR
>NC_015683.1|WP_013912196.1|2026396_2028556_-|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MSQSLGKHVAEPVSRTEQLDYHALNALLNLYNADGKIQFDKDREAANQFFLQHVNQNTVFFHDLEEKIEYLVENNYYEPEIIQQYEFAFIKDLFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGDQDLARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERVYGKAFADISVSEHYAEMVEDPRIRKSKINAREFFQTIAEIQFESGYPYIMFEDTVNKANPIEGRVNMSNLCSEILQVNTPSLFNDDLTYEEVGEDISCNLGSLNIAMTMDSPDFAKTIETAIRGLTAVSEQTAINSVPSIRKGNDAAHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYQCLVASNKLARERGRTFAGFETSKYATGEYFDDFDPADFAPKTEKVAKIFADSSIYTPTVADWADLKDAVAAHGLYNRYLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDNENLDYFADAYEIGFEKVIDTYAVATKYVDQGLSLTLFFKDSATTRDINRAQIYAWRKGIKTLYYIRLRQVALMGTEVEGCVSCML
>NC_015683.1|WP_013912197.1|2028705_2029143_-|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MLVVYFSSATENTKRFVHKLGFPAKRIPLHKSSPELVVDEPYVLVCPTYGGGASISGGNTRPVPAQVIRFLNNEHNRGLLRAVIAGGNSNFGLDFGKAGDMIAAKCQVPYVYRFELLGTDEDVRLVRDGLLSNAAALGLLPEPVA
>NC_015683.1|WP_013242528.1|2029269_2029503_-|glutaredoxin-like-protein-NrdH
MSITVYTKPACVQCNATKKALDRAGLDYTLVDISIDDEARDYVMALGYLQAPVVEVNGEHWSGFRPERISSLVAQVA
>NC_015683.1|WP_003852698.1|2029977_2030100_-|50S-ribosomal-protein-L36
MKVRKSLRSLKNKPGAQVVRRRGKVYVINKKDPRFKARQG
>NC_015683.1|WP_013912198.1|2030334_2031165_+|ammonia-dependent-NAD(+)-synthetase
MDTLRSTIKHRLRTQSIINPSEEIAKRVDFLACYLAASGAKGFALGISGGQDSTLAGRLAQLAVEKLRKEGHPADFWAIRLPYGVQADEADAQTALAFIQPDHSVTINIKPATDACAADVAQALGLKELGDFNKGNVKARQRMIAQYALAGEKGLLVIGTDHAAENVTGFFTKFGDGAADILPLAGLSKRQGAQLLQALNAPDSTWLKVPTADLEEDRPALPDEAALGVTYSEIDTYIEGTEAVSKEATARIEHLWKVSEHKRHLPVEPGDTWWRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015683_1	1.13\|27491\|32\|NC_015683\|CRISPRCasFinder,CRT	27491-27522	32	NC_015683.1	1880862-1880893	0	1.0
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_015683.1	1863853-1863884	0	1.0
NC_015683_1	1.32\|28651\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28651-28682	32	NC_015683.1	1868123-1868154	0	1.0
NC_015683_4	4.2\|2018826\|32\|NC_015683\|CRISPRCasFinder,CRT	2018826-2018857	32	NC_015683.1	1885184-1885215	0	1.0
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NC_015683.1	574270-574302	0	1.0
NC_015683_4	4.11\|2019376\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019376-2019407	32	NC_015683.1	1863735-1863766	0	1.0
NC_015683_4	4.20\|2019926\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019926-2019957	32	NC_015683.1	2144582-2144613	1	0.969
NC_015683_4	4.23\|2020109\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2020109-2020140	32	NC_015683.1	1850036-1850067	1	0.969
NC_015683_1	1.22\|28041\|32\|NC_015683\|CRISPRCasFinder,CRT	28041-28072	32	NC_015683.1	1869460-1869491	2	0.938
NC_015683_4	4.24\|2020170\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2020170-2020201	32	NC_015683.1	2119384-2119415	2	0.938

1. spacer 1.13|27491|32|NC_015683|CRISPRCasFinder,CRT matches to position: 1880862-1880893, mismatch: 0, identity: 1.0

gctagggtctaaacgttactacttttaagggt	CRISPR spacer
gctagggtctaaacgttactacttttaagggt	Protospacer
********************************

2. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to position: 1863853-1863884, mismatch: 0, identity: 1.0

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
cggctggtgatgaggacgaagacgctgaggaa	Protospacer
********************************

3. spacer 1.32|28651|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to position: 1868123-1868154, mismatch: 0, identity: 1.0

cactgactggcccagcagggccacggatgatc	CRISPR spacer
cactgactggcccagcagggccacggatgatc	Protospacer
********************************

4. spacer 4.2|2018826|32|NC_015683|CRISPRCasFinder,CRT matches to position: 1885184-1885215, mismatch: 0, identity: 1.0

ttcatccgagggggctcaccatcgcgcatgaa	CRISPR spacer
ttcatccgagggggctcaccatcgcgcatgaa	Protospacer
********************************

5. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to position: 574270-574302, mismatch: 0, identity: 1.0

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
ctccctgctctacgacatcgggcatatccccgg	Protospacer
*********************************

6. spacer 4.11|2019376|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to position: 1863735-1863766, mismatch: 0, identity: 1.0

cgctgcgctcggctacaatgctggcgctagcg	CRISPR spacer
cgctgcgctcggctacaatgctggcgctagcg	Protospacer
********************************

7. spacer 4.20|2019926|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to position: 2144582-2144613, mismatch: 1, identity: 0.969

cgcccaaccccactcctcacggaccgtggggc	CRISPR spacer
cgcccaaccccactcctcacggcccgtggggc	Protospacer
********************** *********

8. spacer 4.23|2020109|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to position: 1850036-1850067, mismatch: 1, identity: 0.969

catcacccccgaactcgcacaatacgcattcg	CRISPR spacer
catcacccccgaactcgcacaatgcgcattcg	Protospacer
***********************.********

9. spacer 1.22|28041|32|NC_015683|CRISPRCasFinder,CRT matches to position: 1869460-1869491, mismatch: 2, identity: 0.938

caaagctgctgatctccgaggaactaatggat	CRISPR spacer
caaagctgctgatctccgaagaactgatggat	Protospacer
*******************.*****.******

10. spacer 4.24|2020170|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to position: 2119384-2119415, mismatch: 2, identity: 0.938

ctgcaaaacccaaccagcaaccgccgccagtg	CRISPR spacer
ctgtaaaacccagccagcaaccgccgccagtg	Protospacer
***.********.*******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	78672-78704	4	0.879
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NZ_CP020899	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence	80346-80378	5	0.848
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	73856-73888	5	0.848
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	73856-73888	5	0.848
NC_015683_1	1.31\|28590\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28590-28621	32	NZ_CP049038	Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_1, complete sequence	161837-161868	6	0.812
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	68461-68493	6	0.818
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	82828-82860	6	0.818
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	68297-68329	6	0.818
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NC_021908	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence	68287-68319	6	0.818
NC_015683_1	1.1\|26759\|32\|NC_015683\|CRISPRCasFinder,CRT	26759-26790	32	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	111678-111709	7	0.781
NC_015683_1	1.2\|26820\|32\|NC_015683\|CRISPRCasFinder,CRT	26820-26851	32	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	457121-457152	7	0.781
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	922324-922355	7	0.781
NC_015683_1	1.10\|27308\|32\|NC_015683\|CRISPRCasFinder,CRT	27308-27339	32	NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	407636-407667	7	0.781
NC_015683_1	1.10\|27308\|32\|NC_015683\|CRISPRCasFinder,CRT	27308-27339	32	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	371751-371782	7	0.781
NC_015683_1	1.10\|27308\|32\|NC_015683\|CRISPRCasFinder,CRT	27308-27339	32	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	200183-200214	7	0.781
NC_015683_1	1.10\|27308\|32\|NC_015683\|CRISPRCasFinder,CRT	27308-27339	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	338785-338816	7	0.781
NC_015683_1	1.12\|27430\|32\|NC_015683\|CRISPRCasFinder,CRT	27430-27461	32	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	593750-593781	7	0.781
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	MT952852	Streptomyces phage Beuffert, complete genome	89934-89965	7	0.781
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_048720	Streptomyces phage Blueeyedbeauty, complete genome	89602-89633	7	0.781
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1442605-1442636	7	0.781
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	659045-659076	7	0.781
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	968348-968379	7	0.781
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	479481-479512	7	0.781
NC_015683_1	1.17\|27735\|32\|NC_015683\|CRISPRCasFinder,CRT	27735-27766	32	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	229762-229793	7	0.781
NC_015683_1	1.17\|27735\|32\|NC_015683\|CRISPRCasFinder,CRT	27735-27766	32	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	235355-235386	7	0.781
NC_015683_1	1.21\|27980\|32\|NC_015683\|CRISPRCasFinder,CRT	27980-28011	32	NC_022049	Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence	117189-117220	7	0.781
NC_015683_1	1.31\|28590\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28590-28621	32	NC_008042	Ruegeria sp. TM1040 plasmid unnamed, complete sequence	61770-61801	7	0.781
NC_015683_4	4.7\|2019132\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019132-2019163	32	NC_019919	Yersinia phage phiR201 complete genome	108997-109028	7	0.781
NC_015683_4	4.32\|2020658\|32\|NC_015683\|CRISPRCasFinder,CRT	2020658-2020689	32	NC_006826	Sphingobium xenophagum QYY plasmid pSx-Qyy, complete sequence	4654-4685	7	0.781
NC_015683_1	1.1\|26759\|32\|NC_015683\|CRISPRCasFinder,CRT	26759-26790	32	NZ_KR071788	Xanthomonas oryzae pv. oryzicola strain GX01 plasmid pXOCgx01, complete sequence	37559-37590	8	0.75
NC_015683_1	1.2\|26820\|32\|NC_015683\|CRISPRCasFinder,CRT	26820-26851	32	NZ_CP012899	Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence	318785-318816	8	0.75
NC_015683_1	1.2\|26820\|32\|NC_015683\|CRISPRCasFinder,CRT	26820-26851	32	NC_010627	Paraburkholderia phymatum STM815 plasmid pBPHY02, complete sequence	592644-592675	8	0.75
NC_015683_1	1.2\|26820\|32\|NC_015683\|CRISPRCasFinder,CRT	26820-26851	32	NC_018696	Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence	782955-782986	8	0.75
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	MN692951	Marine virus AFVG_117M12, complete genome	12111-12142	8	0.75
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	176296-176327	8	0.75
NC_015683_1	1.12\|27430\|32\|NC_015683\|CRISPRCasFinder,CRT	27430-27461	32	NC_049470	Arthrobacter phage TripleJ, complete genome	3970-4001	8	0.75
NC_015683_1	1.13\|27491\|32\|NC_015683\|CRISPRCasFinder,CRT	27491-27522	32	MK972709	Salmonella phage SE20, complete genome	56239-56270	8	0.75
NC_015683_1	1.13\|27491\|32\|NC_015683\|CRISPRCasFinder,CRT	27491-27522	32	MK972704	Salmonella phage SE19, complete genome	90262-90293	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP025809	Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence	11834-11865	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	112335-112366	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1628785-1628816	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1593945-1593976	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	112140-112171	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	12990-13021	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1347419-1347450	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	112424-112455	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	112319-112350	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1199455-1199486	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	378410-378441	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	450635-450666	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	357293-357324	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1313092-1313123	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	1678459-1678490	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	857652-857683	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	901113-901144	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	909638-909669	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	265632-265663	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	115043-115074	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	156148-156179	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	1519881-1519912	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1628801-1628832	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1950999-1951030	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	MN369754	Streptomyces phage Limpid, complete genome	91158-91189	8	0.75
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_048719	Streptomyces phage Annadreamy, complete genome	85845-85876	8	0.75
NC_015683_1	1.28\|28407\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28407-28438	32	LC425515	Uncultured phage DNA, contig: NODE375	9494-9525	8	0.75
NC_015683_1	1.32\|28651\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28651-28682	32	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	963213-963244	8	0.75
NC_015683_1	1.32\|28651\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28651-28682	32	KY555145	Caulobacter phage Ccr29, complete genome	194115-194146	8	0.75
NC_015683_1	1.32\|28651\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28651-28682	32	KY555143	Caulobacter phage Ccr2, complete genome	187262-187293	8	0.75
NC_015683_1	1.32\|28651\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28651-28682	32	KY555142	Caulobacter phage Ccr10, complete genome	186787-186818	8	0.75
NC_015683_1	1.35\|28835\|32\|NC_015683\|CRISPRCasFinder,CRT	28835-28866	32	NZ_CP032095	Vibrio alfacsensis strain CAIM 1831 plasmid pVa1, complete sequence	80576-80607	8	0.75
NC_015683_4	4.4\|2018948\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2018948-2018980	33	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	52019-52051	8	0.758
NC_015683_4	4.5\|2019010\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019010-2019041	32	NZ_CP041514	Klebsiella michiganensis strain KNU07 plasmid unnamed, complete sequence	93430-93461	8	0.75
NC_015683_4	4.5\|2019010\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019010-2019041	32	NZ_CP019987	Citrobacter werkmanii strain BF-6 plasmid unnamed, complete sequence	47563-47594	8	0.75
NC_015683_4	4.5\|2019010\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019010-2019041	32	NZ_CP029436	Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence	349978-350009	8	0.75
NC_015683_4	4.5\|2019010\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019010-2019041	32	NZ_CP029431	Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence	35508-35539	8	0.75
NC_015683_4	4.5\|2019010\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019010-2019041	32	NZ_CP017451	Klebsiella sp. LTGPAF-6F plasmid unnamed1, complete sequence	303576-303607	8	0.75
NC_015683_4	4.5\|2019010\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019010-2019041	32	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	222372-222403	8	0.75
NC_015683_4	4.5\|2019010\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019010-2019041	32	NZ_CP029442	Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence	29450-29481	8	0.75
NC_015683_4	4.5\|2019010\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019010-2019041	32	NZ_CP048383	Citrobacter freundii strain 62 plasmid p6_A, complete sequence	86270-86301	8	0.75
NC_015683_4	4.13\|2019498\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019498-2019529	32	MN693745	Marine virus AFVG_250M903, complete genome	23591-23622	8	0.75
NC_015683_4	4.13\|2019498\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019498-2019529	32	MN694743	Marine virus AFVG_250M902, complete genome	23600-23631	8	0.75
NC_015683_4	4.14\|2019559\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019559-2019590	32	MT774388	CrAssphage cr112_1, complete genome	60307-60338	8	0.75
NC_015683_4	4.19\|2019865\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019865-2019896	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	468201-468232	8	0.75
NC_015683_4	4.32\|2020658\|32\|NC_015683\|CRISPRCasFinder,CRT	2020658-2020689	32	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	568297-568328	8	0.75
NC_015683_1	1.1\|26759\|32\|NC_015683\|CRISPRCasFinder,CRT	26759-26790	32	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	558631-558662	9	0.719
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	MK448933	Streptococcus phage Javan420, complete genome	39345-39376	9	0.719
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	MN693197	Marine virus AFVG_25M502, complete genome	30376-30407	9	0.719
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP024586	Roseomonas sp. FDAARGOS_362 plasmid unnamed4, complete sequence	25433-25464	9	0.719
NC_015683_1	1.9\|27247\|32\|NC_015683\|CRISPRCasFinder,CRT	27247-27278	32	MN693197	Marine virus AFVG_25M502, complete genome	34158-34189	9	0.719
NC_015683_1	1.9\|27247\|32\|NC_015683\|CRISPRCasFinder,CRT	27247-27278	32	MN694001	Marine virus AFVG_250M499, complete genome	22999-23030	9	0.719
NC_015683_1	1.12\|27430\|32\|NC_015683\|CRISPRCasFinder,CRT	27430-27461	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	803819-803850	9	0.719
NC_015683_1	1.12\|27430\|32\|NC_015683\|CRISPRCasFinder,CRT	27430-27461	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1328564-1328595	9	0.719
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	242604-242635	9	0.719
NC_015683_1	1.14\|27552\|32\|NC_015683\|CRISPRCasFinder,CRT	27552-27583	32	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	654365-654396	9	0.719
NC_015683_1	1.16\|27674\|32\|NC_015683\|CRISPRCasFinder,CRT	27674-27705	32	NZ_CP050094	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence	52754-52785	9	0.719
NC_015683_1	1.22\|28041\|32\|NC_015683\|CRISPRCasFinder,CRT	28041-28072	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	648030-648061	9	0.719
NC_015683_1	1.28\|28407\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28407-28438	32	NZ_CP018211	Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_2, complete sequence	546-577	9	0.719
NC_015683_1	1.28\|28407\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28407-28438	32	NZ_CP025416	Lactobacillus plantarum strain X7021 plasmid unnamed4, complete sequence	56423-56454	9	0.719
NC_015683_1	1.28\|28407\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28407-28438	32	NZ_CP046661	Lactobacillus plantarum strain 83-18 plasmid p83-18.1, complete sequence	50269-50300	9	0.719
NC_015683_1	1.28\|28407\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28407-28438	32	NZ_CP028335	Lactobacillus plantarum strain SRCM101167 plasmid unnamed1, complete sequence	28237-28268	9	0.719
NC_015683_4	4.2\|2018826\|32\|NC_015683\|CRISPRCasFinder,CRT	2018826-2018857	32	NC_008270	Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence	358536-358567	9	0.719
NC_015683_4	4.2\|2018826\|32\|NC_015683\|CRISPRCasFinder,CRT	2018826-2018857	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	236137-236168	9	0.719
NC_015683_4	4.7\|2019132\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019132-2019163	32	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	734906-734937	9	0.719
NC_015683_4	4.15\|2019620\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019620-2019652	33	NZ_CP009356	Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence	200063-200095	9	0.727
NC_015683_4	4.31\|2020597\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2020597-2020628	32	NZ_CP032703	Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence	356170-356201	9	0.719
NC_015683_4	4.32\|2020658\|32\|NC_015683\|CRISPRCasFinder,CRT	2020658-2020689	32	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	1117986-1118017	9	0.719
NC_015683_1	1.1\|26759\|32\|NC_015683\|CRISPRCasFinder,CRT	26759-26790	32	NZ_CP016457	Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence	97259-97290	10	0.688
NC_015683_1	1.1\|26759\|32\|NC_015683\|CRISPRCasFinder,CRT	26759-26790	32	MK765643	Tortoise microvirus 90 isolate 90_SP_126, complete genome	3017-3048	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP013502	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S23-C10	34660-34691	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	GU943080	Uncultured phage MedDCM-OCT-S11-C178 genomic sequence	8220-8251	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP013505	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S38-C26	34814-34845	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP013504	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S34-C29	33619-33650	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP014448	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S35-C81, * SEQUENCING IN PROGRESS *, 2 ordered pieces	5083-5114	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP013506	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S42-C35	21032-21063	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP013782	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S24-C149, * SEQUENCING IN PROGRESS *	1003-1034	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP013503	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S29-C22	23952-23983	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	GU943055	Uncultured phage MedDCM-OCT-S04-C26 genomic sequence	33074-33105	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP013791	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S36-C101, * SEQUENCING IN PROGRESS *	20134-20165	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	GU943083	Uncultured phage MedDCM-OCT-S12-C97 genomic sequence	4328-4359	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP013784	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S27-C105, * SEQUENCING IN PROGRESS *	2090-2121	10	0.688
NC_015683_1	1.3\|26881\|32\|NC_015683\|CRISPRCasFinder,CRT	26881-26912	32	AP013787	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S32-C104, * SEQUENCING IN PROGRESS *	20134-20165	10	0.688
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP018472	Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence	7816-7847	10	0.688
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP023286	Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pCuR, complete sequence	68209-68240	10	0.688
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP018859	Xanthomonas citri pv. citri strain LH201 plasmid pLH201.1, complete sequence	61378-61409	10	0.688
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP018851	Xanthomonas citri pv. citri strain LJ207-7 plasmid pLJ207-7.1, complete sequence	75703-75734	10	0.688
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP018848	Xanthomonas citri pv. citri strain LL074-4 plasmid pLL074-4.1, complete sequence	103533-103564	10	0.688
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP018855	Xanthomonas citri pv. citri strain LH276 plasmid pLH276.1, complete sequence	89311-89342	10	0.688
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP018729	Xanthomonas gardneri strain JS749-3 plasmid pJS749-3.1, complete sequence	89477-89508	10	0.688
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP018726	Xanthomonas vesicatoria ATCC 35937 strain LMG911 plasmid pLMG911.1, complete sequence	81265-81296	10	0.688
NC_015683_1	1.6\|27064\|32\|NC_015683\|CRISPRCasFinder,CRT	27064-27095	32	NZ_CP018732	Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.1, complete sequence	188398-188429	10	0.688
NC_015683_1	1.8\|27186\|32\|NC_015683\|CRISPRCasFinder,CRT	27186-27217	32	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	686429-686460	10	0.688
NC_015683_1	1.24\|28163\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28163-28194	32	NZ_CP034813	Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence	132933-132964	10	0.688
NC_015683_1	1.32\|28651\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28651-28682	32	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	48211-48242	10	0.688
NC_015683_1	1.36\|28896\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	28896-28927	32	NC_049844	Klebsiella phage 13, complete genome	28522-28553	10	0.688
NC_015683_4	4.5\|2019010\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019010-2019041	32	NZ_CP045400	Halomonas sp. THAF12 plasmid pTHAF12_a, complete sequence	53785-53816	10	0.688
NC_015683_4	4.15\|2019620\|33\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019620-2019652	33	MH319764	Marine virus AG-345-P14 Ga0172274_11 genomic sequence	24282-24314	10	0.697
NC_015683_4	4.31\|2020597\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2020597-2020628	32	NZ_CP020848	Klebsiella variicola strain KPN1481 plasmid pKPN1481-1, complete sequence	134018-134049	10	0.688
NC_015683_4	4.31\|2020597\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2020597-2020628	32	NZ_CP009856	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-784, complete sequence	60965-60996	10	0.688
NC_015683_4	4.31\|2020597\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2020597-2020628	32	NZ_CP008898	Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-576, complete sequence	15674-15705	10	0.688
NC_015683_1	1.12\|27430\|32\|NC_015683\|CRISPRCasFinder,CRT	27430-27461	32	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	986719-986750	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	MT080592	UNVERIFIED: Staphylococcus phage vB_SauM_EW3, complete genome	50239-50270	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	KX011028	Staphylococcus phage pSco-10, complete genome	47705-47736	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	MN935200	UNVERIFIED: Staphylococcus phage VTCCBPA116 genomic sequence	73288-73319	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	MT080603	UNVERIFIED: Staphylococcus phage vB_SauM_EW9, complete genome	48604-48635	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	MT787017	UNVERIFIED: Staphylococcus phage WV, complete genome	52598-52629	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	MT080596	UNVERIFIED: Staphylococcus phage vB_SauM_EW42, complete genome	112480-112511	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	MT080593	UNVERIFIED: Staphylococcus phage vB_SauM_EW36, complete genome	72948-72979	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	MT080597	UNVERIFIED: Staphylococcus phage vB_SauM_EW5, complete genome	89740-89771	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	KY794643	Staphylococcus phage vB_Sau_S24, complete genome	49776-49807	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	MT080598	UNVERIFIED: Staphylococcus phage vB_SauM_EW6, complete genome	52264-52295	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	LR215720	Staphylococcus phage Stab23 genome assembly, chromosome: I	90140-90171	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	MT080599	UNVERIFIED: Staphylococcus phage vB_SauM_EW7, complete genome	48633-48664	11	0.656
NC_015683_1	1.15\|27613\|32\|NC_015683\|CRISPRCasFinder,CRT	27613-27644	32	KY794642	Staphylococcus phage vB_Sau_Clo6, complete genome	49723-49754	11	0.656

1. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 4, identity: 0.879

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
cgcgctgatctacgacatcgagcatatccccgg	Protospacer
* * *** ************.************

2. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020899 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence) position: , mismatch: 5, identity: 0.848

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
cgcgttgatctacgacatcgagcatatccccgg	Protospacer
* * .** ************.************

3. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 5, identity: 0.848

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
cgcgttgatctacgacatcgagcatatccccgg	Protospacer
* * .** ************.************

4. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 5, identity: 0.848

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
cgcgttgatctacgacatcgagcatatccccgg	Protospacer
* * .** ************.************

5. spacer 1.31|28590|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049038 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_1, complete sequence) position: , mismatch: 6, identity: 0.812

ttgaggctaaagccctctgcgaaagcgcctag	CRISPR spacer
ttgaggctaaagccatctgcgaaaccgcaggc	Protospacer
************** ********* ***  .

6. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 6, identity: 0.818

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
cgctctcatctacgatatcgagcatatccccgg	Protospacer
* *.**  *******.****.************

7. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 6, identity: 0.818

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
cgctctcatctacgatatcgagcatatccccgg	Protospacer
* *.**  *******.****.************

8. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 6, identity: 0.818

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
cgctctcatctacgatatcgagcatatccccgg	Protospacer
* *.**  *******.****.************

9. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 6, identity: 0.818

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
cgctctcatctacgatatcgagcatatccccgg	Protospacer
* *.**  *******.****.************

10. spacer 1.1|26759|32|NC_015683|CRISPRCasFinder,CRT matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 7, identity: 0.781

ttatcgcgcagattgtggaagaagccgagaag	CRISPR spacer
ggatcgcccagattgtggaagcagccgagcgc	Protospacer
  ***** ************* ******* .

11. spacer 1.2|26820|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ggatgcacc----tttggttcattttcatgctttgc	CRISPR spacer
----tcaccatcatttggttcattttcatccattgc	Protospacer
     ****    **************** * ****

12. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 7, identity: 0.781

tcatttttg-gctttgatgaagctggcgcgctc	CRISPR spacer
-cgttagcgcgctttgatcaagctcgcgcgctc	Protospacer
 *.**  .* ******** ***** ********

13. spacer 1.10|27308|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP014127 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

--aacgccgtgcccttttcaatctgatcacgcag	CRISPR spacer
tcaaag--atgccgttttcaatctgattacgcat	Protospacer
  ** *  .**** *************.*****

14. spacer 1.10|27308|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 7, identity: 0.781

--aacgccgtgcccttttcaatctgatcacgcag	CRISPR spacer
tcaaag--atgccgttttcaatctgattacgcat	Protospacer
  ** *  .**** *************.*****

15. spacer 1.10|27308|32|NC_015683|CRISPRCasFinder,CRT matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 7, identity: 0.781

--aacgccgtgcccttttcaatctgatcacgcag	CRISPR spacer
tcaaag--atgccgttttcaatctgattacgcat	Protospacer
  ** *  .**** *************.*****

16. spacer 1.10|27308|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

--aacgccgtgcccttttcaatctgatcacgcag	CRISPR spacer
tcaaag--atgccgttttcaatctgattacgcat	Protospacer
  ** *  .**** *************.*****

17. spacer 1.12|27430|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

aacgcgc---catcatgggcggcaccccaaagggc	CRISPR spacer
---gtgcgaacatcatgggcggcgacccaaaggcc	Protospacer
   *.**   *************. ******** *

18. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to MT952852 (Streptomyces phage Beuffert, complete genome) position: , mismatch: 7, identity: 0.781

-cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
acgagt-atgatgaggacgaagaagttgaggat	Protospacer
 **. * .*************** *.******

19. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_048720 (Streptomyces phage Blueeyedbeauty, complete genome) position: , mismatch: 7, identity: 0.781

-cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
acgagt-atgatgaggacgaagaggttgaggac	Protospacer
 **. * .*************** *.******

20. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.781

-cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
acggc-ggtgatggcgacgaagacgctgaactc	Protospacer
 **** *******. **************.

21. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 7, identity: 0.781

-cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
acggc-ggtgatggcgacgaagacgctgaactc	Protospacer
 **** *******. **************.

22. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 7, identity: 0.781

-cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
acggc-ggtgatggcgacgaagacgctgaactc	Protospacer
 **** *******. **************.

23. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 7, identity: 0.781

-cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
acggc-ggtgatggcgacgaagacgctgaactc	Protospacer
 **** *******. **************.

24. spacer 1.17|27735|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 7, identity: 0.781

agcccgccaccgagaagaaaattcagcagcgg	CRISPR spacer
cggtcaccaccgagaaggaaattgagcagcgt	Protospacer
 * .*.***********.***** *******

25. spacer 1.17|27735|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 7, identity: 0.781

agcccgccaccgagaagaaaattcagcagcgg	CRISPR spacer
cggtcaccaccgagaaggaaattgagcagcgt	Protospacer
 * .*.***********.***** *******

26. spacer 1.21|27980|32|NC_015683|CRISPRCasFinder,CRT matches to NC_022049 (Paracoccus aminophilus JCM 7686 plasmid pAMI4, complete sequence) position: , mismatch: 7, identity: 0.781

tcggtgcggttttgcgcagcgccgcggagttg	CRISPR spacer
ccgacgcggctttgcgcagcgccgcgcagcag	Protospacer
.**..****.**************** **. *

27. spacer 1.31|28590|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NC_008042 (Ruegeria sp. TM1040 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ttgaggctaaagccctctgcgaaagcgcctag	CRISPR spacer
tcgaggctaaagccatctgcgaaaccgcgggc	Protospacer
*.************ ********* ***  .

28. spacer 4.7|2019132|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NC_019919 (Yersinia phage phiR201 complete genome) position: , mismatch: 7, identity: 0.781

aaggtttttcacggtttcggaatccgccattt	CRISPR spacer
acagtttatcacggtttcggaatccaccttcc	Protospacer
* .**** *****************.** *..

29. spacer 4.32|2020658|32|NC_015683|CRISPRCasFinder,CRT matches to NC_006826 (Sphingobium xenophagum QYY plasmid pSx-Qyy, complete sequence) position: , mismatch: 7, identity: 0.781

atcattgcccagctcacgagcacgctcggcgg	CRISPR spacer
ctcctgtgcctgctcacgggcacgctcggcgg	Protospacer
 ** *   ** *******.*************

30. spacer 1.1|26759|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_KR071788 (Xanthomonas oryzae pv. oryzicola strain GX01 plasmid pXOCgx01, complete sequence) position: , mismatch: 8, identity: 0.75

ttatcgcgcagattgtggaagaagccgagaag	CRISPR spacer
tcctggcgcagattgtggatgaagctgatcat	Protospacer
*. * ************** *****.**  *

31. spacer 1.2|26820|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP012899 (Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence) position: , mismatch: 8, identity: 0.75

ggatgcacctttggttcattttcatgctttgc	CRISPR spacer
ctttatccctttggttcagttccatgctttgc	Protospacer
   *.. *********** **.**********

32. spacer 1.2|26820|32|NC_015683|CRISPRCasFinder,CRT matches to NC_010627 (Paraburkholderia phymatum STM815 plasmid pBPHY02, complete sequence) position: , mismatch: 8, identity: 0.75

ggatgcacctttggttcattttcatgctttgc	CRISPR spacer
ctttatccctttggttcagttccatgctttgc	Protospacer
   *.. *********** **.**********

33. spacer 1.2|26820|32|NC_015683|CRISPRCasFinder,CRT matches to NC_018696 (Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence) position: , mismatch: 8, identity: 0.75

ggatgcacctttggttcattttcatgctttgc	CRISPR spacer
ctttatccctttggttcagttccatgctttgc	Protospacer
   *.. *********** **.**********

34. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to MN692951 (Marine virus AFVG_117M12, complete genome) position: , mismatch: 8, identity: 0.75

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
cccattttgtctttgatgaatctggcgcgact	Protospacer
.*  ***** ********** ******** ..

35. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
ctcccggccacctgagccgaggcgctgacgct	Protospacer
* ********.********.******.*. ..

36. spacer 1.12|27430|32|NC_015683|CRISPRCasFinder,CRT matches to NC_049470 (Arthrobacter phage TripleJ, complete genome) position: , mismatch: 8, identity: 0.75

aacgcgccatcatgggcggcaccccaaagggc	CRISPR spacer
aacgggcgatcatgggcggcacccggttggag	Protospacer
**** ** **************** .  **.

37. spacer 1.13|27491|32|NC_015683|CRISPRCasFinder,CRT matches to MK972709 (Salmonella phage SE20, complete genome) position: , mismatch: 8, identity: 0.75

gctagg---gtctaaacgttactacttttaagggt	CRISPR spacer
---agacttgtttaaccgttactacttttaagcct	Protospacer
   **.   **.*** ****************  *

38. spacer 1.13|27491|32|NC_015683|CRISPRCasFinder,CRT matches to MK972704 (Salmonella phage SE19, complete genome) position: , mismatch: 8, identity: 0.75

gctagg---gtctaaacgttactacttttaagggt	CRISPR spacer
---agacttgtttaaccgttactacttttaagcct	Protospacer
   **.   **.*** ****************  *

39. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP025809 (Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
cacatggtgatgatgccgaagacgctgagcgg	Protospacer
*.  ********* * ************* ..

40. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

41. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

42. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

43. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

44. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

45. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

46. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

47. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

48. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

49. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

50. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

51. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

52. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

53. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

54. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

55. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

56. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

57. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

58. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

59. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

60. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

61. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aggctggtgatgaggacgatgccgcgccggtc	Protospacer
 ****************** * ***   **

62. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 8, identity: 0.75

-cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
actgc-ggtgatggcgacgaagacgctgaactc	Protospacer
 * ** *******. **************.

63. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to MN369754 (Streptomyces phage Limpid, complete genome) position: , mismatch: 8, identity: 0.75

-cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
acgagt-atgatgaggacgaagaggttgagggt	Protospacer
 **. * .*************** *.*****.

64. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_048719 (Streptomyces phage Annadreamy, complete genome) position: , mismatch: 8, identity: 0.75

-cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
acgagt-atgatgaggacgaagaggttgagggt	Protospacer
 **. * .*************** *.*****.

65. spacer 1.28|28407|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to LC425515 (Uncultured phage DNA, contig: NODE375) position: , mismatch: 8, identity: 0.75

ccgtggcattagcgttatgctgaattgcttca	CRISPR spacer
caataactatagctttttgctgaattgcttca	Protospacer
* .*..*  **** ** ***************

66. spacer 1.32|28651|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cactgactggcccagcagggccacggatgatc--	CRISPR spacer
gatcgaccggcccagcagggccatgga--gtcga	Protospacer
 *..***.***************.***  .**

67. spacer 1.32|28651|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to KY555145 (Caulobacter phage Ccr29, complete genome) position: , mismatch: 8, identity: 0.75

cactgactggcccagcagggccacggatgatc	CRISPR spacer
gactggctggcccagcagggcaactggcgcac	Protospacer
 ****.*************** ** *..*  *

68. spacer 1.32|28651|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to KY555143 (Caulobacter phage Ccr2, complete genome) position: , mismatch: 8, identity: 0.75

cactgactggcccagcagggccacggatgatc	CRISPR spacer
gactggctggcccagcagggcaactggcgcac	Protospacer
 ****.*************** ** *..*  *

69. spacer 1.32|28651|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to KY555142 (Caulobacter phage Ccr10, complete genome) position: , mismatch: 8, identity: 0.75

cactgactggcccagcagggccacggatgatc	CRISPR spacer
gactggctggcccagcagggcaactggcgcac	Protospacer
 ****.*************** ** *..*  *

70. spacer 1.35|28835|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP032095 (Vibrio alfacsensis strain CAIM 1831 plasmid pVa1, complete sequence) position: , mismatch: 8, identity: 0.75

ttcacgcgcacggatgaggcgaaaaagcccta	CRISPR spacer
atcacgcgcacggaagtggcgaaaacgttaca	Protospacer
 ************* * ******** *.. .*

71. spacer 4.4|2018948|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 8, identity: 0.758

ctccctgctctacgacatcgggcatatccccgg	CRISPR spacer
cgtgctcctctacgacatcgggcacatcccgac	Protospacer
* . ** *****************.***** .

72. spacer 4.5|2019010|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041514 (Klebsiella michiganensis strain KNU07 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

-tgctcgctcgtggccacccttaccgcgcactc	CRISPR spacer
gtgacta-ttgtggccaccattaccgcgcattc	Protospacer
 ** ... *.********* **********.**

73. spacer 4.5|2019010|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019987 (Citrobacter werkmanii strain BF-6 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

-tgctcgctcgtggccacccttaccgcgcactc	CRISPR spacer
gtgacta-ttgtggccaccattaccgcgcattc	Protospacer
 ** ... *.********* **********.**

74. spacer 4.5|2019010|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029436 (Klebsiella quasipneumoniae strain CAV2013 plasmid pKPC_CAV2013, complete sequence) position: , mismatch: 8, identity: 0.75

-tgctcgctcgtggccacccttaccgcgcactc	CRISPR spacer
gtgacta-ttgtggccaccattaccgcgcattc	Protospacer
 ** ... *.********* **********.**

75. spacer 4.5|2019010|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029431 (Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-435, complete sequence) position: , mismatch: 8, identity: 0.75

-tgctcgctcgtggccacccttaccgcgcactc	CRISPR spacer
gtgacta-ttgtggccaccattaccgcgcattc	Protospacer
 ** ... *.********* **********.**

76. spacer 4.5|2019010|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017451 (Klebsiella sp. LTGPAF-6F plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

-tgctcgctcgtggccacccttaccgcgcactc	CRISPR spacer
gtgacta-ttgtggccaccattaccgcgcattc	Protospacer
 ** ... *.********* **********.**

77. spacer 4.5|2019010|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 8, identity: 0.75

-tgctcgctcgtggccacccttaccgcgcactc	CRISPR spacer
gtgacta-ttgtggccaccattaccgcgcattc	Protospacer
 ** ... *.********* **********.**

78. spacer 4.5|2019010|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029442 (Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-412, complete sequence) position: , mismatch: 8, identity: 0.75

-tgctcgctcgtggccacccttaccgcgcactc	CRISPR spacer
gtgacta-ttgtggccaccattaccgcgcattc	Protospacer
 ** ... *.********* **********.**

79. spacer 4.5|2019010|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048383 (Citrobacter freundii strain 62 plasmid p6_A, complete sequence) position: , mismatch: 8, identity: 0.75

-tgctcgctcgtggccacccttaccgcgcactc	CRISPR spacer
gtgacta-ttgtggccaccattaccgcgcattc	Protospacer
 ** ... *.********* **********.**

80. spacer 4.13|2019498|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to MN693745 (Marine virus AFVG_250M903, complete genome) position: , mismatch: 8, identity: 0.75

aaagctcc----agccaagaaaggtatgccagtaga	CRISPR spacer
----ctacacaaagccaagaaaactatgccagtagt	Protospacer
    ** *    **********. ***********

81. spacer 4.13|2019498|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to MN694743 (Marine virus AFVG_250M902, complete genome) position: , mismatch: 8, identity: 0.75

aaagctcc----agccaagaaaggtatgccagtaga	CRISPR spacer
----ctacacaaagccaagaaaactatgccagtagt	Protospacer
    ** *    **********. ***********

82. spacer 4.14|2019559|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to MT774388 (CrAssphage cr112_1, complete genome) position: , mismatch: 8, identity: 0.75

aggttcccaaatcttttattgttcctgattta	CRISPR spacer
cagtttggaactctttaattgttcctgatttt	Protospacer
 .***.  ** ***** **************

83. spacer 4.19|2019865|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.75

tccccgtgagatcgagcgagcttgtttaaaaa	CRISPR spacer
ccgccgtcagatcgcgcgagcttgttgtaagc	Protospacer
.* **** ****** ***********  **.

84. spacer 4.32|2020658|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 8, identity: 0.75

atcattgcccagctcacgagcacgctcggcgg	CRISPR spacer
gccgtggtccagctcgcgatcacgctcggcgc	Protospacer
..*.* *.*******.*** ***********

85. spacer 1.1|26759|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 9, identity: 0.719

ttatcgcgcagattgtggaagaagccgagaag	CRISPR spacer
ccatgccgcatatcgtggaagaagccgaggcc	Protospacer
..**  **** **.***************.

86. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to MK448933 (Streptococcus phage Javan420, complete genome) position: , mismatch: 9, identity: 0.719

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
tcgattttagctttgatgaagctagcgtctaa	Protospacer
**. ****.**************.***. .

87. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to MN693197 (Marine virus AFVG_25M502, complete genome) position: , mismatch: 9, identity: 0.719

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
gtataggtggctttgatgaagctggagtgcat	Protospacer
 .**   ****************** *.** .

88. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP024586 (Roseomonas sp. FDAARGOS_362 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
ggcccggccatgtgagcctgggcgctggccag	Protospacer
 .********* ****** *******...*

89. spacer 1.9|27247|32|NC_015683|CRISPRCasFinder,CRT matches to MN693197 (Marine virus AFVG_25M502, complete genome) position: , mismatch: 9, identity: 0.719

aatgacctaccataaaaccatacaaaaaccta	CRISPR spacer
ctggacctaccatcaaaccagacaaaaggttt	Protospacer
   ********** ****** ******. .*

90. spacer 1.9|27247|32|NC_015683|CRISPRCasFinder,CRT matches to MN694001 (Marine virus AFVG_250M499, complete genome) position: , mismatch: 9, identity: 0.719

aatgacctaccataaaaccatacaaaaaccta	CRISPR spacer
cagcacctatcatgaaaccatacaaaagattc	Protospacer
 *  *****.***.*************. .*

91. spacer 1.12|27430|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

aacgcgccatcatgggcggcaccccaaagggc	CRISPR spacer
aacgcgtcatcatgggccgcaccgtgtccggg	Protospacer
******.********** ***** ..   **

92. spacer 1.12|27430|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.719

aacgcgccatcatgggcggcaccccaaagggc	CRISPR spacer
aacgcgtcatcatgggccgcaccgtgtccggg	Protospacer
******.********** ***** ..   **

93. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 9, identity: 0.719

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
aagacgccgatgaggacgaagacgccgatgag	Protospacer
 .* .* .*****************.** **.

94. spacer 1.14|27552|32|NC_015683|CRISPRCasFinder,CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 9, identity: 0.719

cggctggtgatgaggacgaagacgctgaggaa	CRISPR spacer
atgctggtgatgaggacgatgccgcgccggtc	Protospacer
  ***************** * ***   **

95. spacer 1.16|27674|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 9, identity: 0.719

gacttccacccctcaaaaaccaaacgctcatg	CRISPR spacer
tcagccgacccctcataaaccaaaccctcatc	Protospacer
    .* ******** ********* *****

96. spacer 1.22|28041|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 9, identity: 0.719

caaagctgctgatctccgaggaactaatggat	CRISPR spacer
caaagctgctgatcgccgacgaaccgacaacg	Protospacer
************** **** ****..*...

97. spacer 1.28|28407|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018211 (Lactobacillus plantarum strain BLS41 plasmid pLPBLS41_2, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtggcattagcgttatgctgaattgcttca	CRISPR spacer
tattataattagcgttatgctgaatttctttt	Protospacer
.  *.  ******************* ***.

98. spacer 1.28|28407|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025416 (Lactobacillus plantarum strain X7021 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtggcattagcgttatgctgaattgcttca	CRISPR spacer
tattataattagcgttatgctgaatttctttt	Protospacer
.  *.  ******************* ***.

99. spacer 1.28|28407|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046661 (Lactobacillus plantarum strain 83-18 plasmid p83-18.1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtggcattagcgttatgctgaattgcttca	CRISPR spacer
tattataattagcgttatgctgaatttctttt	Protospacer
.  *.  ******************* ***.

100. spacer 1.28|28407|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028335 (Lactobacillus plantarum strain SRCM101167 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtggcattagcgttatgctgaattgcttca	CRISPR spacer
tattataattagcgttatgctgaatttctttt	Protospacer
.  *.  ******************* ***.

101. spacer 4.2|2018826|32|NC_015683|CRISPRCasFinder,CRT matches to NC_008270 (Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence) position: , mismatch: 9, identity: 0.719

ttcatccgagggggctcaccatcgcgcatgaa	CRISPR spacer
tacctccgaggggcatcaccatcgcgccgacc	Protospacer
* * *********  ************  .

102. spacer 4.2|2018826|32|NC_015683|CRISPRCasFinder,CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcatccgagggggctcaccatcgcgcatgaa	CRISPR spacer
tacctccgaggggcatcaccatcgcgccgacc	Protospacer
* * *********  ************  .

103. spacer 4.7|2019132|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

aaggtttttcacggtttcggaatccgccattt	CRISPR spacer
gccgctttccacggtttcggaaaccgccttga	Protospacer
.  *.***.************* ***** *

104. spacer 4.15|2019620|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009356 (Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence) position: , mismatch: 9, identity: 0.727

cccatgcacagtgacggggtggataaaaaaaga	CRISPR spacer
gctattcacggtgacggggtggataaaacgcac	Protospacer
 *.** ***.****************** . .

105. spacer 4.31|2020597|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctacaaacttttctgcaaacgccacctcctca	CRISPR spacer
ccatcgcctgttctgcaaacgccacttcctgt	Protospacer
*.*. . ** ***************.****

106. spacer 4.32|2020658|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 9, identity: 0.719

atcattgcccagctcacgagcacgctcggcgg	CRISPR spacer
ggcaatgcccagctcactagcacgcccattcg	Protospacer
. ** ************ *******.*. . *

107. spacer 1.1|26759|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP016457 (Sphingobium sp. RAC03 plasmid pBSY17_2, complete sequence) position: , mismatch: 10, identity: 0.688

ttatcgcgcagattgtggaagaagccgagaag	CRISPR spacer
ccggcgagcagattgtcgaagaagccgggctt	Protospacer
... ** ********* **********.*

108. spacer 1.1|26759|32|NC_015683|CRISPRCasFinder,CRT matches to MK765643 (Tortoise microvirus 90 isolate 90_SP_126, complete genome) position: , mismatch: 10, identity: 0.688

ttatcgcgcagattgtggaagaagccgagaag	CRISPR spacer
gcttcgcgcagattgcagaagaagcccctccg	Protospacer
 . ************..*********     *

109. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP013502 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S23-C10) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

110. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to GU943080 (Uncultured phage MedDCM-OCT-S11-C178 genomic sequence) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

111. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP013505 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S38-C26) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

112. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP013504 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S34-C29) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

113. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP014448 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S35-C81, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

114. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP013506 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S42-C35) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

115. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP013782 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S24-C149, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

116. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP013503 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C14A-MedDCM-OCT-S29-C22) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

117. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to GU943055 (Uncultured phage MedDCM-OCT-S04-C26 genomic sequence) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

118. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP013791 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S36-C101, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

119. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to GU943083 (Uncultured phage MedDCM-OCT-S12-C97 genomic sequence) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

120. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP013784 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S27-C105, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

121. spacer 1.3|26881|32|NC_015683|CRISPRCasFinder,CRT matches to AP013787 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C14A-MedDCM-OCT-S32-C104, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

tcatttttggctttgatgaagctggcgcgctc	CRISPR spacer
taatttttggtgttgatgaagctggtaaatct	Protospacer
* ********. *************.. ....

122. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP018472 (Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence) position: , mismatch: 10, identity: 0.688

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
gaccctgctatctgagccggggcggcgttggg	Protospacer
 **** **.*************** .. *

123. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP023286 (Xanthomonas citri pv. citri strain 03-1638-1-1 plasmid pCuR, complete sequence) position: , mismatch: 10, identity: 0.688

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
gaccctgctatctgagccggggcggcgttggg	Protospacer
 **** **.*************** .. *

124. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP018859 (Xanthomonas citri pv. citri strain LH201 plasmid pLH201.1, complete sequence) position: , mismatch: 10, identity: 0.688

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
gaccctgctatctgagccggggcggcgttggg	Protospacer
 **** **.*************** .. *

125. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP018851 (Xanthomonas citri pv. citri strain LJ207-7 plasmid pLJ207-7.1, complete sequence) position: , mismatch: 10, identity: 0.688

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
gaccctgctatctgagccggggcggcgttggg	Protospacer
 **** **.*************** .. *

126. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP018848 (Xanthomonas citri pv. citri strain LL074-4 plasmid pLL074-4.1, complete sequence) position: , mismatch: 10, identity: 0.688

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
gaccctgctatctgagccggggcggcgttggg	Protospacer
 **** **.*************** .. *

127. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP018855 (Xanthomonas citri pv. citri strain LH276 plasmid pLH276.1, complete sequence) position: , mismatch: 10, identity: 0.688

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
gaccctgctatctgagccggggcggcgttggg	Protospacer
 **** **.*************** .. *

128. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP018729 (Xanthomonas gardneri strain JS749-3 plasmid pJS749-3.1, complete sequence) position: , mismatch: 10, identity: 0.688

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
gaccctgctatctgagccggggcggcgttggg	Protospacer
 **** **.*************** .. *

129. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP018726 (Xanthomonas vesicatoria ATCC 35937 strain LMG911 plasmid pLMG911.1, complete sequence) position: , mismatch: 10, identity: 0.688

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
gaccctgctatctgagccggggcggcgttggg	Protospacer
 **** **.*************** .. *

130. spacer 1.6|27064|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP018732 (Xanthomonas gardneri strain ICMP 7383 plasmid pICMP7383.1, complete sequence) position: , mismatch: 10, identity: 0.688

cacccggccatctgagccggggcgctaatctc	CRISPR spacer
gaccctgctatctgagccggggcggcgttggg	Protospacer
 **** **.*************** .. *

131. spacer 1.8|27186|32|NC_015683|CRISPRCasFinder,CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 10, identity: 0.688

gctttgtcgtagggggcgctgattgcaaggag	CRISPR spacer
cctttgccgtagggggcgatgattaccgccgc	Protospacer
 *****.*********** *****.* .  .

132. spacer 1.24|28163|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034813 (Paracoccus sp. Arc7-R13 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ctgccgcgcatccctcaccggatcggggggtg	CRISPR spacer
aacgcgcgcatcgctgaccggatcgggcatcg	Protospacer
    ******** ** *********** . .*

133. spacer 1.32|28651|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 10, identity: 0.688

cactgactggcccagcagggccacggatgatc	CRISPR spacer
gcctgactcgccccgcagggccacgacgtggc	Protospacer
  ****** **** ***********.   . *

134. spacer 1.36|28896|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NC_049844 (Klebsiella phage 13, complete genome) position: , mismatch: 10, identity: 0.688

aagcaacgatttcaagatcacccttttgattg	CRISPR spacer
attggttcatttaaagatcacccctttgattt	Protospacer
*   . . **** **********.*******

135. spacer 4.5|2019010|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045400 (Halomonas sp. THAF12 plasmid pTHAF12_a, complete sequence) position: , mismatch: 10, identity: 0.688

tgctcgctcgtggccacccttaccgcgcactc	CRISPR spacer
gcctcgctcgtggccaccctagccggctgcgt	Protospacer
  ****************** .***  ..* .

136. spacer 4.15|2019620|33|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to MH319764 (Marine virus AG-345-P14 Ga0172274_11 genomic sequence) position: , mismatch: 10, identity: 0.697

cccatgcacagtgacggggtggataaaaaaaga	CRISPR spacer
agattatacactgacggggttgataaaaaaatc	Protospacer
    *..*** ********* **********

137. spacer 4.31|2020597|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020848 (Klebsiella variicola strain KPN1481 plasmid pKPN1481-1, complete sequence) position: , mismatch: 10, identity: 0.688

ctacaaacttttctgcaaacgccacctcctca	CRISPR spacer
gaatccgactttccgcaaacgccacgtcctca	Protospacer
  *.  . .****.*********** ******

138. spacer 4.31|2020597|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009856 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-784, complete sequence) position: , mismatch: 10, identity: 0.688

ctacaaacttttctgcaaacgccacctcctca	CRISPR spacer
gaatccgactttccgcaaacgccacgtcctca	Protospacer
  *.  . .****.*********** ******

139. spacer 4.31|2020597|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008898 (Enterobacter hormaechei subsp. hoffmannii ECNIH3 plasmid pENT-576, complete sequence) position: , mismatch: 10, identity: 0.688

ctacaaacttttctgcaaacgccacctcctca	CRISPR spacer
gaatccgactttccgcaaacgccacgtcctca	Protospacer
  *.  . .****.*********** ******

140. spacer 1.12|27430|32|NC_015683|CRISPRCasFinder,CRT matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aacgcgccatcatgggcggcaccccaaagggc	CRISPR spacer
tggccgccatcatgggcggcacgcaaagcctg	Protospacer
 .  ****************** * **.

141. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to MT080592 (UNVERIFIED: Staphylococcus phage vB_SauM_EW3, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

142. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to KX011028 (Staphylococcus phage pSco-10, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

143. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to MN935200 (UNVERIFIED: Staphylococcus phage VTCCBPA116 genomic sequence) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

144. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to MT080603 (UNVERIFIED: Staphylococcus phage vB_SauM_EW9, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

145. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to MT787017 (UNVERIFIED: Staphylococcus phage WV, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

146. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to MT080596 (UNVERIFIED: Staphylococcus phage vB_SauM_EW42, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

147. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to MT080593 (UNVERIFIED: Staphylococcus phage vB_SauM_EW36, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

148. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to MT080597 (UNVERIFIED: Staphylococcus phage vB_SauM_EW5, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

149. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to KY794643 (Staphylococcus phage vB_Sau_S24, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

150. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to MT080598 (UNVERIFIED: Staphylococcus phage vB_SauM_EW6, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

151. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to LR215720 (Staphylococcus phage Stab23 genome assembly, chromosome: I) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

152. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to MT080599 (UNVERIFIED: Staphylococcus phage vB_SauM_EW7, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

153. spacer 1.15|27613|32|NC_015683|CRISPRCasFinder,CRT matches to KY794642 (Staphylococcus phage vB_Sau_Clo6, complete genome) position: , mismatch: 11, identity: 0.656

gcaagtaactgcacctggcgtgtgtttccccc	CRISPR spacer
tggtgtaacttcacctggcatgtgtttagaaa	Protospacer
  . ****** ********.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1285753 : 1316221

Corynebacterium_phage(60.0%)

tail,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013911525.1\|1285753_1286875_-	hypothetical protein	A0A1W6JRE7	Corynebacterium_phage	2.7e-76	48.0
WP_013911526.1\|1286871_1287720_-	hypothetical protein	A0A1P8D5L4	Corynebacterium_phage	4.5e-52	40.4
WP_013911527.1\|1287726_1288533_-	hypothetical protein	NA	NA	NA	NA
WP_013911528.1\|1288540_1294153_-\|tail	phage tail tape measure protein	A0A1W6JRG1	Corynebacterium_phage	5.1e-83	29.6
WP_013911529.1\|1294164_1294488_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_013911530.1\|1294529_1294823_-	hypothetical protein	A0A1P8D5N6	Corynebacterium_phage	1.7e-11	42.3
WP_013911531.1\|1294925_1295816_-	hypothetical protein	A0A1W6JRH0	Corynebacterium_phage	9.7e-13	52.3
WP_014836408.1\|1295812_1296205_-	hypothetical protein	NA	NA	NA	NA
WP_013911532.1\|1296204_1296495_-	hypothetical protein	A0A142K9Z8	Gordonia_phage	5.4e-05	47.2
WP_013911533.1\|1296494_1296827_-	hypothetical protein	A0A1P8D5M1	Corynebacterium_phage	6.3e-10	43.1
WP_013911534.1\|1296826_1297252_-	hypothetical protein	A0A1L6BZF5	Pasteurella_phage	3.9e-12	38.4
WP_013911535.1\|1297266_1297620_-	hypothetical protein	NA	NA	NA	NA
WP_013911536.1\|1297629_1298553_-	hypothetical protein	A0A023ZX65	Mycobacterium_phage	3.7e-23	28.6
WP_013911537.1\|1298567_1298957_-	DUF2190 family protein	A0A166Y3D5	Gordonia_phage	1.3e-06	35.6
WP_013911538.1\|1298968_1300363_-\|protease	Clp protease ClpP	A0A1L6BZF6	Pasteurella_phage	1.4e-58	36.5
WP_013911539.1\|1300359_1301730_-	hypothetical protein	A0A1P8D5N1	Corynebacterium_phage	9.4e-92	47.9
WP_013911540.1\|1301741_1303301_-	hypothetical protein	A0A1P8D5K9	Corynebacterium_phage	9.1e-99	46.3
WP_013911541.1\|1303324_1303648_-	hypothetical protein	NA	NA	NA	NA
WP_013911542.1\|1303799_1304552_-	hypothetical protein	A0A1P8D5W0	Corynebacterium_phage	3.9e-47	33.1
WP_014525796.1\|1304625_1305096_-	hypothetical protein	NA	NA	NA	NA
WP_013911544.1\|1306307_1306901_-	hypothetical protein	NA	NA	NA	NA
WP_041479182.1\|1306890_1307091_-	hypothetical protein	NA	NA	NA	NA
WP_013911545.1\|1307087_1307483_-	hypothetical protein	NA	NA	NA	NA
WP_013911546.1\|1307494_1308862_-	DEAD/DEAH box helicase	A0A1L6BZE2	Pasteurella_phage	7.0e-180	65.8
WP_013911547.1\|1308842_1309124_-	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	1.7e-19	53.3
WP_013911548.1\|1309434_1311894_-	virulence protein E	A0A1W6JQ82	Corynebacterium_phage	1.1e-271	57.4
WP_013911549.1\|1311913_1313899_-	DNA polymerase	A0A1W6JQ98	Corynebacterium_phage	4.4e-223	58.2
WP_013911550.1\|1313988_1314606_-	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	4.4e-41	50.3
WP_013911551.1\|1314736_1316221_-	DUF2800 domain-containing protein	A0A1W6JQ97	Corynebacterium_phage	1.4e-154	57.5

DBSCAN-SWA_2

1319403 : 1327714

Corynebacterium_phage(25.0%)

integrase

attL 1317077:1317091|attR 1330273:1330287

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1317077:1317091	attL	NA	NA	NA	NA
WP_013911556.1\|1319403_1320192_-	hypothetical protein	A0A2H4IZX7	uncultured_Caudovirales_phage	3.5e-30	46.2
WP_041479184.1\|1320280_1320505_-	hypothetical protein	A0A1W6JQ99	Corynebacterium_phage	1.3e-14	55.1
WP_013911557.1\|1320661_1321198_+	HTH domain-containing protein	A0A1L6BZI7	Pasteurella_phage	5.8e-05	30.7
WP_013911558.1\|1321190_1321859_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_013911559.1\|1321979_1322351_+	ImmA/IrrE family metallo-endopeptidase	A0A1W6JQ88	Corynebacterium_phage	5.5e-47	67.8
WP_013911560.1\|1322546_1323728_+\|integrase	site-specific integrase	Q9ZWV7	Corynephage	8.2e-44	31.7
WP_013911561.1\|1323760_1325392_-	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	3.1e-33	24.6
WP_013911562.1\|1325502_1325982_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_013911563.1\|1325978_1326428_-	SUF system NifU family Fe-S cluster assembly protein	A0A2P1CJL8	Mycobacterium_phage	1.2e-19	41.0
WP_013911564.1\|1326424_1327714_-	cysteine desulfurase	Q2XUY6	environmental_halophage	1.5e-102	43.5
1330273:1330287	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1856709 : 1874884

Gordonia_phage(27.27%)

tail,capsid,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013912031.1\|1856709_1862637_-\|tail	phage tail tape measure protein	A0A166XZ24	Gordonia_phage	8.5e-89	61.5
WP_023635168.1\|1862646_1863057_-	hypothetical protein	A0A159B6I6	Gordonia_phage	9.9e-13	47.3
WP_013912033.1\|1863002_1863419_-	hypothetical protein	NA	NA	NA	NA
WP_013912034.1\|1863579_1864416_-	hypothetical protein	NA	NA	NA	NA
WP_013912035.1\|1864428_1864863_-	hypothetical protein	NA	NA	NA	NA
WP_013912036.1\|1864859_1865189_-	HK97 gp10 family phage protein	G9FH91	Rhodococcus_phage	1.2e-08	43.0
WP_013912037.1\|1865185_1865533_-	hypothetical protein	NA	NA	NA	NA
WP_013912038.1\|1865529_1865973_-	hypothetical protein	G9FH89	Rhodococcus_phage	4.3e-06	39.4
WP_013912039.1\|1866053_1866962_-	hypothetical protein	F8UBM2	Clostridium_phage	2.1e-39	36.4
WP_013912040.1\|1866974_1867688_-	hypothetical protein	NA	NA	NA	NA
WP_148248915.1\|1867774_1868848_-\|capsid	minor capsid protein	A0A1J0MCS2	Streptomyces_phage	1.0e-48	36.7
WP_013912042.1\|1868844_1870422_-\|portal	phage portal protein	A0A162E1F1	Gordonia_phage	4.4e-61	32.5
WP_013912043.1\|1870537_1871773_-\|terminase	PBSX family phage terminase large subunit	A0A1J0MCC2	Streptomyces_phage	4.8e-87	43.1
WP_013912044.1\|1871762_1872188_-	hypothetical protein	NA	NA	NA	NA
WP_013912045.1\|1872262_1872862_-	ParB N-terminal domain-containing protein	A0A2P1JXP2	Rhodococcus_phage	2.7e-35	39.9
WP_042891591.1\|1873035_1873236_-	hypothetical protein	NA	NA	NA	NA
WP_148248926.1\|1873337_1874123_-	phage antirepressor Ant	F5A3A8	Riemerella_phage	2.8e-24	38.5
WP_013912047.1\|1874258_1874435_-	hypothetical protein	NA	NA	NA	NA
WP_148248927.1\|1874554_1874884_-	hypothetical protein	A0A0S2MYI3	Enterococcus_phage	9.7e-19	52.2

DBSCAN-SWA_4

1918515 : 1981190

Gordonia_phage(26.32%)

protease,terminase,tRNA,portal,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014836688.1\|1918515_1921251_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	7.8e-138	38.4
WP_013912103.1\|1921416_1922397_-	malate dehydrogenase	NA	NA	NA	NA
WP_013912104.1\|1923012_1923771_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013912105.1\|1923831_1925118_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.1e-132	55.6
WP_013912108.1\|1928118_1928748_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.4e-37	43.5
WP_013912109.1\|1928763_1929363_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-42	48.3
WP_013912110.1\|1929703_1931056_-	trigger factor	NA	NA	NA	NA
WP_013912111.1\|1931933_1932176_+	hypothetical protein	A0A1W6JRB8	Corynebacterium_phage	3.9e-09	48.4
WP_013912112.1\|1932310_1933114_+	hypothetical protein	NA	NA	NA	NA
WP_013912113.1\|1933196_1934207_-	pirin family protein	NA	NA	NA	NA
WP_014836691.1\|1934324_1934798_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_013912115.1\|1935020_1935641_-	DSBA oxidoreductase	NA	NA	NA	NA
WP_013912116.1\|1935944_1938560_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.4e-40	29.2
WP_029974858.1\|1938989_1939664_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_013912118.1\|1939689_1940082_+	globin	NA	NA	NA	NA
WP_013912119.1\|1940093_1940990_+	DMT family transporter	NA	NA	NA	NA
WP_013912120.1\|1940993_1941602_-	hypothetical protein	NA	NA	NA	NA
WP_013912121.1\|1941607_1942036_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_013912122.1\|1942236_1943907_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	6.0e-48	27.9
WP_042891619.1\|1944076_1944640_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_013912124.1\|1945174_1946899_+	hypothetical protein	NA	NA	NA	NA
WP_013912125.1\|1946895_1948446_+	YcaO-like family protein	NA	NA	NA	NA
WP_013912126.1\|1948481_1949966_+	nitroreductase	NA	NA	NA	NA
WP_013912127.1\|1949962_1952563_+	lantibiotic dehydratase	NA	NA	NA	NA
WP_013912128.1\|1952562_1953576_+	hypothetical protein	NA	NA	NA	NA
WP_013912129.1\|1953572_1954550_+	hypothetical protein	NA	NA	NA	NA
WP_013912130.1\|1954588_1954762_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_013912131.1\|1954836_1956288_+	YcaO-like family protein	NA	NA	NA	NA
WP_013912132.1\|1956320_1957079_-	permease	NA	NA	NA	NA
WP_013912133.1\|1957075_1957999_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.5e-20	26.9
WP_013912134.1\|1958159_1960205_-	bifunctional copper resistance protein CopD/cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_013912135.1\|1960804_1963090_+	carbon starvation protein A	NA	NA	NA	NA
WP_013912136.1\|1963109_1963310_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_013912137.1\|1963858_1964548_+	hypothetical protein	NA	NA	NA	NA
WP_013912138.1\|1964641_1966483_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	3.9e-32	33.7
WP_013912139.1\|1966757_1967753_+	oxidoreductase	NA	NA	NA	NA
WP_013912140.1\|1967892_1968696_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013912141.1\|1968761_1969421_+	oligoribonuclease	M4M9I5	Vibrio_phage	2.9e-22	35.1
WP_013912142.1\|1969600_1970428_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_014836712.1\|1970491_1971679_-	L,D-transpeptidase	NA	NA	NA	NA
WP_080561864.1\|1972098_1972404_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_148248919.1\|1972515_1972713_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013912145.1\|1973349_1973730_+	hypothetical protein	NA	NA	NA	NA
WP_013912146.1\|1973726_1974002_+	HNH endonuclease	G9FGW5	Rhodococcus_phage	1.9e-23	64.4
WP_042891626.1\|1974121_1974580_+	hypothetical protein	A0A2P1CBY2	Gordonia_phage	5.5e-28	53.2
WP_042891790.1\|1974587_1975907_+\|terminase	terminase	A0A2P1CBZ2	Gordonia_phage	5.3e-76	40.8
WP_013912148.1\|1976126_1977170_+\|portal	phage portal protein	G9FGU9	Rhodococcus_phage	9.4e-76	45.6
WP_013912149.1\|1977166_1977835_+	glycoside hydrolase family 25 protein	A0A1W6JQH9	Corynebacterium_phage	1.4e-77	61.7
WP_148248920.1\|1977849_1978065_+	hypothetical protein	NA	NA	NA	NA
WP_158307111.1\|1978048_1978225_+	hypothetical protein	NA	NA	NA	NA
WP_013912151.1\|1978214_1979678_+	hypothetical protein	G9FGV2	Rhodococcus_phage	1.1e-77	39.7
WP_013912152.1\|1979681_1979993_+	hypothetical protein	A0A2P1CBZ4	Gordonia_phage	3.6e-15	48.8
WP_013912153.1\|1979997_1980348_+	hypothetical protein	NA	NA	NA	NA
WP_013912154.1\|1980353_1980788_+	hypothetical protein	A0A0K0MWW7	Gordonia_phage	7.0e-25	43.0
WP_013912155.1\|1980791_1981190_+	hypothetical protein	A0A2P1CBZ9	Gordonia_phage	3.8e-25	47.5

DBSCAN-SWA_5

2118338 : 2156695

Corynebacterium_phage(38.46%)

tail,integrase,portal

attL 2115662:2115687|attR 2157034:2157059

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2115662:2115687	attL	NA	NA	NA	NA
WP_013912025.1\|2118338_2118686_-	hypothetical protein	A0A1W6JRH1	Corynebacterium_phage	3.5e-11	58.9
WP_013912273.1\|2118682_2119159_-	hypothetical protein	A0A220NQQ7	Corynebacterium_phage	6.0e-46	57.5
WP_013912274.1\|2119164_2119494_-	hypothetical protein	NA	NA	NA	NA
WP_013912275.1\|2119493_2120831_-	basic 30 kDa endochitinase	A7IYC3	Corynebacterium_phage	2.2e-125	58.7
WP_148248921.1\|2120909_2122094_-	adhesin	NA	NA	NA	NA
WP_013912277.1\|2122141_2122333_-	hypothetical protein	A0A1W6JRF8	Corynebacterium_phage	4.7e-10	69.4
WP_013912278.1\|2122445_2123552_-	hypothetical protein	A0A1W6JRE7	Corynebacterium_phage	6.5e-83	61.2
WP_013912279.1\|2123544_2124444_-	hypothetical protein	Q37921	Corynephage	7.9e-55	41.8
WP_013912280.1\|2124444_2125227_-	hypothetical protein	NA	NA	NA	NA
WP_013912281.1\|2125244_2131421_-\|tail	phage tail tape measure protein	A0A2P1A0P5	Gordonia_phage	1.7e-71	29.6
WP_013912282.1\|2131444_2131780_-	hypothetical protein	NA	NA	NA	NA
WP_013912283.1\|2131887_2132241_-	hypothetical protein	NA	NA	NA	NA
WP_013912284.1\|2132336_2133179_-	hypothetical protein	A0A1W6JRH0	Corynebacterium_phage	4.8e-14	51.2
WP_042891649.1\|2133188_2133644_-	hypothetical protein	A0A1C9EI09	Gordonia_phage	1.8e-10	28.9
WP_013912285.1\|2133640_2133955_-	hypothetical protein	A0A1C9EHV8	Gordonia_phage	1.2e-15	43.7
WP_013912286.1\|2133951_2134323_-	hypothetical protein	NA	NA	NA	NA
WP_042891651.1\|2134319_2134700_-	hypothetical protein	NA	NA	NA	NA
WP_013912288.1\|2134659_2134986_-	hypothetical protein	NA	NA	NA	NA
WP_013912289.1\|2134998_2135988_-	hypothetical protein	A0A162E1G1	Gordonia_phage	1.4e-105	62.3
WP_080561885.1\|2136000_2136408_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_013912291.1\|2136663_2136963_-	hypothetical protein	NA	NA	NA	NA
WP_013912292.1\|2136974_2138405_-	EndoU domain-containing protein	A0A1C9EHV4	Gordonia_phage	2.1e-25	33.2
WP_013912293.1\|2138405_2139797_-\|portal	phage portal protein	A0A2H4JAT8	uncultured_Caudovirales_phage	3.2e-47	32.2
WP_013912294.1\|2139796_2141365_-	hypothetical protein	D7NW48	Streptomyces_phage	1.1e-123	47.2
WP_013912295.1\|2141390_2141837_-	hypothetical protein	NA	NA	NA	NA
WP_013912296.1\|2141924_2142326_-	hypothetical protein	A0A0F6SJL7	Mycobacterium_phage	2.1e-23	44.8
WP_080561865.1\|2142340_2142700_-	hypothetical protein	NA	NA	NA	NA
WP_013912297.1\|2142800_2143388_-	hypothetical protein	A0A1P8D5W1	Corynebacterium_phage	5.8e-06	29.6
WP_042891652.1\|2143507_2143807_-	hypothetical protein	NA	NA	NA	NA
WP_013912299.1\|2143871_2144525_-	hypothetical protein	NA	NA	NA	NA
WP_158307112.1\|2144521_2144692_-	hypothetical protein	NA	NA	NA	NA
WP_013912300.1\|2144702_2145602_-	hypothetical protein	A0A0M4RAA7	Mycobacterium_phage	1.0e-41	38.6
WP_013912301.1\|2145601_2146429_-	coiled-coil domain-containing protein	NA	NA	NA	NA
WP_013912302.1\|2146438_2146855_-	RusA family crossover junction endodeoxyribonuclease	D6PG23	uncultured_phage	1.6e-10	37.7
WP_013912303.1\|2146851_2147754_-	hypothetical protein	A0A159B6L8	Gordonia_phage	3.6e-23	53.8
WP_013912304.1\|2147879_2148353_-	single-stranded DNA-binding protein	G1D5D5	Mycobacterium_phage	1.3e-13	40.0
WP_148248923.1\|2148349_2149213_-	hypothetical protein	A0A2D1GGG2	Gordonia_phage	9.0e-40	43.3
WP_013912306.1\|2149173_2149392_-	hypothetical protein	NA	NA	NA	NA
WP_013912307.1\|2149375_2150275_-	hypothetical protein	A0A2D1GGN0	Gordonia_phage	1.4e-59	46.9
WP_013912308.1\|2150256_2150433_-	hypothetical protein	NA	NA	NA	NA
WP_013912309.1\|2150429_2150840_-	hypothetical protein	NA	NA	NA	NA
WP_158307113.1\|2151080_2151221_-	hypothetical protein	NA	NA	NA	NA
WP_013912311.1\|2151840_2152026_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_049781476.1\|2152070_2152880_-	hypothetical protein	A0A0C5AFE7	Paenibacillus_phage	3.2e-23	39.8
WP_013912313.1\|2153033_2153312_+	hypothetical protein	NA	NA	NA	NA
WP_148248924.1\|2153408_2153675_-	hypothetical protein	NA	NA	NA	NA
WP_013912315.1\|2153825_2154344_+	helix-turn-helix transcriptional regulator	A0A1W6JRB0	Corynebacterium_phage	1.4e-19	40.8
WP_013912316.1\|2154353_2154764_+	ImmA/IrrE family metallo-endopeptidase	A0A1W6JRC2	Corynebacterium_phage	2.5e-56	79.7
WP_042891656.1\|2154789_2155152_+	hypothetical protein	NA	NA	NA	NA
WP_013912318.1\|2155162_2155765_+	hypothetical protein	NA	NA	NA	NA
WP_013912319.1\|2155864_2156695_+\|integrase	tyrosine-type recombinase/integrase	A0A1W6JQG4	Corynebacterium_phage	1.1e-47	41.1
2157034:2157059	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2195999 : 2204463

Pandoravirus(33.33%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013912356.1\|2195999_2197748_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.2e-62	32.2
WP_013912357.1\|2197725_2198394_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_013912358.1\|2198401_2198788_-	hypothetical protein	NA	NA	NA	NA
WP_042891823.1\|2198784_2199300_-	hypothetical protein	NA	NA	NA	NA
WP_013912360.1\|2199310_2199757_-	DUF3180 domain-containing protein	NA	NA	NA	NA
WP_013912361.1\|2199753_2200209_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4VNV0	Pandoravirus	1.1e-09	36.0
WP_013912362.1\|2200210_2200552_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_013912363.1\|2200538_2201321_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.1e-20	32.0
WP_013912364.1\|2201322_2201886_-	GTP cyclohydrolase I FolE	A0A1W7AF02	Streptococcus_virus	8.2e-50	58.2
WP_013912365.1\|2201878_2203885_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5EQU5	Bathycoccus_sp._RCC1105_virus	2.0e-111	50.7
WP_014836795.1\|2203881_2204463_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	3.9e-15	31.4

Anti-CRISPR protein detection

Acr_ID: NC_015683.1|WP_013912313.1|2153033_2153312_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_015683.1|WP_013912313.1|2153033_2153312_+|hypothetical-protein

2153033_2153312_+

92 aa aa

2118338-2156695

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_015683_4	Orphan	4.20\|2019926\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2019926-2019957	32	2144582-2144613	1
NC_015683_4	Orphan	4.24\|2020170\|32\|NC_015683\|CRISPRCasFinder,CRT,PILER-CR	2020170-2020201	32	2119384-2119415	2

1. spacer 4.20|2019926|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NC_015683 position: 2144582-2144613, mismatch: 1

cgcccaaccccactcctcacggaccgtggggc	CRISPR spacer
cgcccaaccccactcctcacggcccgtggggc	Protospacer
********************** *********

2. spacer 4.24|2020170|32|NC_015683|CRISPRCasFinder,CRT,PILER-CR matches to NC_015683 position: 2119384-2119415, mismatch: 2

ctgcaaaacccaaccagcaaccgccgccagtg	CRISPR spacer
ctgtaaaacccagccagcaaccgccgccagtg	Protospacer
***.********.*******************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015683

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information