CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015663	Klebsiella aerogenes KCTC 2190, complete sequence	4 crisprs	csa3,cas3,RT,WYL,cas14j,DEDDh,DinG	0	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015663_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015663_1

602336-602450

Orphan

Consensus_repeat	Method
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015663_1

>merge|NC_015663|1|602336-602450|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGCCATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATCGTTGGGTAGCCCGGATAAGGCGTAGCCGC

>NC_015663|1|1|602336-602450|CRISPRCasFinder
GTTGGGTAGCCCGGATAAGGCGTAACCGC	CATCCGGGAAGGTTTCCCCGGCTCGCGCTGCGCTCAGCCGGGCTACGGGTACGCATC
GTTGGGTAGCCCGGATAAGGCGTAGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015663.1\|WP_004205298.1\|612721_613051_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
NC_015663.1\|WP_015369781.1\|603311_606185_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NC_015663.1\|WP_015703432.1\|611976_612555_-\|YecA-family-protein	unknown	unknown	gnl\|CDD\|234976
NC_015663.1\|WP_015369786.1\|598786_599146_+\|copper-resistance-protein	unknown	unknown	unknown
NC_015663.1\|WP_015369787.1\|597228_598662_+\|6-phospho-beta-glucosidase-BglA	unknown	unknown	gnl\|CDD\|184975
NC_015663.1\|WP_015703425.1\|601206_601818_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NC_015663.1\|WP_015703424.1\|599195_601205_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|226685
NC_015663.1\|WP_015703431.1\|610634_611951_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NC_015663.1\|WP_015703429.1\|608246_609449_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NC_015663.1\|WP_015703423.1\|596380_597115_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_015663.1\|WP_015703421.1\|594112_595096_+\|tRNA-modifying-protein-YgfZ	unknown	unknown	gnl\|CDD\|236567
NC_015663.1\|WP_015703430.1\|609459_610638_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NC_015663.1\|WP_002916480.1\|606729_607824_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NC_015663.1\|WP_015703422.1\|596018_596330_-\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179908
NC_015663.1\|WP_015703426.1\|601807_602311_+\|protein-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|239309
NC_015663.1\|WP_008806429.1\|595194_595854_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|185044
NC_015663.1\|WP_015703428.1\|606315_606705_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_015663.1\|WP_015703433.1\|613375_613972_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NC_015663.1\|WP_015703427.1\|602506_603250_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|182051
NC_015663.1\|WP_015369791.1\|593622_593889_-\|FAD-assembly-factor-SdhE	unknown	unknown	gnl\|CDD\|182803

Protein	Function_ID	Function_description	E-value
NC_015663.1\|WP_004205298.1\|612721_613051_+\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	3.38717e-64
NC_015663.1\|WP_015369781.1\|603311_606185_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NC_015663.1\|WP_015703432.1\|611976_612555_-\|YecA-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	1.57873e-121
NC_015663.1\|WP_015703429.1\|608246_609449_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NC_015663.1\|WP_015369787.1\|597228_598662_+\|6-phospho-beta-glucosidase-BglA	gnl\|CDD\|184975	PRK15014, PRK15014, 6-phospho-beta-glucosidase BglA; Provisional.	0
NC_015663.1\|WP_015703425.1\|601206_601818_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	2.48131e-54
NC_015663.1\|WP_015703424.1\|599195_601205_+\|thioredoxin-family-protein	gnl\|CDD\|226685	COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion].	5.1747e-101
NC_015663.1\|WP_015703431.1\|610634_611951_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NC_015663.1\|WP_015703423.1\|596380_597115_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.59305e-58
NC_015663.1\|WP_015703421.1\|594112_595096_+\|tRNA-modifying-protein-YgfZ	gnl\|CDD\|236567	PRK09559, PRK09559, putative global regulator; Reviewed.	0
NC_015663.1\|WP_015703430.1\|609459_610638_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NC_015663.1\|WP_002916480.1\|606729_607824_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NC_015663.1\|WP_015703422.1\|596018_596330_-\|ASCH-domain-containing-protein	gnl\|CDD\|179908	PRK04980, PRK04980, hypothetical protein; Provisional.	1.76534e-62
NC_015663.1\|WP_015703426.1\|601807_602311_+\|protein-disulfide-oxidoreductase	gnl\|CDD\|239309	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.	1.85444e-47
NC_015663.1\|WP_008806429.1\|595194_595854_-\|hemolysin-III-family-protein	gnl\|CDD\|185044	PRK15087, PRK15087, hemolysin; Provisional.	9.93513e-138
NC_015663.1\|WP_015703428.1\|606315_606705_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.27348e-72
NC_015663.1\|WP_015703433.1\|613375_613972_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	1.42023e-120
NC_015663.1\|WP_015703427.1\|602506_603250_-\|SDR-family-oxidoreductase	gnl\|CDD\|182051	PRK09730, PRK09730, SDR family oxidoreductase.	1.55358e-168
NC_015663.1\|WP_015369791.1\|593622_593889_-\|FAD-assembly-factor-SdhE	gnl\|CDD\|182803	PRK10878, PRK10878, FAD assembly factor SdhE.	2.85923e-47

>NC_015663.1|WP_015703426.1|601807_602311_+|protein-disulfide-oxidoreductase
MASKIRRWLRELAVWLLIGAAVSLAVDYFRQPALPQNFSATSLQTLDGRTLDLNAMSQQKPLLLYVWATWCGVCRYTTPSVASLAADGGNVLTVALRSGNNAALEKWLTRKKMTLPTVNDPSGQLARQWDIQVTPTLVVISQGEVKSVTTGWTSSWGMRLRLWLASW
>NC_015663.1|WP_015703425.1|601206_601818_+|thioredoxin-domain-containing-protein
MRAITALLLLCVSAFSFAAPAEEPQSNGNDQLAQLLFNDPNSPRTGAKEPKLTIVSFTDYNCPYCKQFDPMLEKIVHDNPDIQLIVKLLPFKGQSSVNAAKAALSTWRQQPDKFWALHQRLMAKKGYHDDASIAAAQKKTATDSVNIDDKTMDSLKMNLILSQVLNIQGTPATIIGDQMVAGAIPAEELEGLVKEQLAKARGQ
>NC_015663.1|WP_015703424.1|599195_601205_+|thioredoxin-family-protein
MFMVFRRLLVCLLWLWLPVSQAADSGWLRAADNQHASVRLRAQSESNGDTRLLLDVALEKGWKTYWRSPGEGGIAPAIAWHTPLEVNWRWPTPQRFDVAGISTQGYHGDVSFPMTLRGKIPPTLSGVLTLSTCSNVCILTDYPFSLDMTAPAGERFNYDFTRAMGTLPLRDGLTSALSASYVSGKLTVTARRDAGWQQPALFIDSMEDVDFGKPSFTSRGDTLTATVPVTDSWGEAAPDLSGKTLSLVLADSGQAQESHIAIAAGSAAPGLALGWVLLMALAGGLILNVMPCVLPVLAMKLGSLVQTERRERGAVRRQFLASVCGIVVSFLALALMMTALRLGNQALGWGIQFQNPWFIGAMALVMVLFSASLLGLFEIRLSSSASTFLATRGGNGLMGHFWQGAFATLLATPCTAPFLGTAVSVALVAPLPLLWGIFFAMGIGMSLPWLLIVAWPGLAQRLPRPGRWMNHLRVVLGLMMLGSALWLVSLLKIHIGRTPVLTLLVILAIVLLLATAWRYRWRTALRAGALAIVVAGVVAFVAQQDGQGPRRDRVNWQPLSEQAIANALAEHKRVFIDVTADWCVTCKTNKYNVLLRDDVQQALSAPDVIALRGDWSRPSADISQFLTARGSAAVPFNQIYGPGLPQGQILPALLDREQLLATLSAAKGK
>NC_015663.1|WP_015369786.1|598786_599146_+|copper-resistance-protein
MIKRQRKAILLVLLACLVVLICTAQRMAGMHALVMNVTAASQSAQPGPDNAEAPVSPCELSAKSLMAVPPMLFEGALLAIALLLAVLAAIPPRIERIWPPRVISPPRLRVHLRLCVFRE
>NC_015663.1|WP_015369787.1|597228_598662_+|6-phospho-beta-glucosidase-BglA
MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITQQVEAGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPQGDETQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGGWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVKAAQRINPEMQVGCMLAMVALYPYSCKPEDVMFAQESMRERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDAQILREGTCAYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPHVKASDWGWQIDPVGLRYALCELYERYQKPLFIVENGFGAYDKVEADGSINDDYRIDYLRAHVEEMIKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGENL
>NC_015663.1|WP_015703423.1|596380_597115_+|MurR/RpiR-family-transcriptional-regulator
MFSHAAVASLNNLEMMVYHYVIKNRDKVMYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSEFRVRFKLYLEQNEPQQANIGASEIMSFFKSVNNDEFDQLLEQAVDIILSSERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVTNDMARNALAIVLSVSGETEEILRFASQFSLHHCKVMSITSHEHSRLAKLADFNLSWHVPQTRIGGVYDITTQIPVIYILESLGRKLARKIGLK
>NC_015663.1|WP_015703422.1|596018_596330_-|ASCH-domain-containing-protein
MQANDITFFQRFQDDILAGRKTITIRDAAESHFKAGDVLRVGRYEDDGYFCTIAVTATSTVTLDTLTEQHAQQENMTLEQLRQVISEIYPAEDRFYVIEFKRL
>NC_015663.1|WP_008806429.1|595194_595854_-|hemolysin-III-family-protein
MVRKPLITQGYSLAEEVANSISHGIGLVFGIVGLVLLLVQAVDTNASATAITSYSLYGGSMIMLFLASTLYHAIPHQRAKQWLKKFDHCAIYLLIAGTYTPFLLVGLNSPLAKGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLTMGWLSLIVVYQLAVKLAVGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQS
>NC_015663.1|WP_015703421.1|594112_595096_+|tRNA-modifying-protein-YgfZ
MAFTPFPPRQPSFSARLPLTLMTLDDWALATITGPDGEKYLQGQITADVSHLTADQHLLAAHCDAKGKMWSNLRVFHRDGGFAWIERRSLREAQLTELKKYAVFSKVTIAANDDLVLLGVAGFQARAALAPLFAALPDAGKPVVTEGVTSLLWFEHPAERFLLVTDADTANRVTDALRGEAQLNNSQQWLALNIEAGLPVIDSVNSAQFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWTLAGTASRVPEAGEDLELKMGDNWRRTGTVLAAVQLDDGSLMVQVVMNNDMEPDSVFRVRDDAGSLSIKPLPYSLEED
>NC_015663.1|WP_015369791.1|593622_593889_-|FAD-assembly-factor-SdhE
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDDDKRLFIRLLENDDPDLFNWLMNHGKPADAQLQRMINLIQTRNRERGPVAI
>NC_015663.1|WP_015703427.1|602506_603250_-|SDR-family-oxidoreductase
MAIALISGASRGIGRATALLLAQEGYTVAVNYHHNIKAATEVVNTIVESGGKATALRADISDEAQVMAMFEAVDRMGEPLMALVNNAGILFTQCTVESLSAERINRVLATNVTGYFLCCREAVKRMSHRHGGKGGAIVNVSSAASRLGAPGEYVDYAASKGAVDTLTTGLALEVAAQGIRVNGVRPGLIYTEMHASGGEPGRVDRVKNSLPMQRGGQPEEVAQAIAWLLSDKASYVTGSFLELAGGK
>NC_015663.1|WP_015369781.1|603311_606185_-|aminomethyl-transferring-glycine-dehydrogenase
MTQTLSQLENRDAFIERHIGSDAQQQQEMLKTVGADSLNALIGQIVPQDIQLATPPQVGDATTEFAALAELKAIAGRNKRFKSYIGMGYTAVQLPPVIQRNMLENPGWYTAYTPYQPEVSQGRLESLLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKNANRFFVAADVHPQTLDVVRTRAETFGFDVIVDDADKVLDHQDVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKKGLKLRHAHYFDTLCVEVADKAAVLARAEALQINLRSDIHGAVGITLDEATTREDVLNLFRAIVGDDHGLDIDTLDKDVALDSRSIPAAMLRDDAILTHPVFNRYHSETEMMRYMHALERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPVEQAEGYHQMIAQLSDWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPSSAHGTNPASAQMAGMQVVVVACDKNGNIDLADLREKAEQAGANLSCIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQNAILNANYIATRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDFGFHAPTMSFPVAGTLMVEPTESESKVELDRFIDAMLAIRAEIDRVKAGEWPLEDNPLVNAPHTQGELVSEWNHPYSRELAVFPAGLHNKYWPTVKRLDDVYGDRNLFCSCVPMSEYQ
>NC_015663.1|WP_015703428.1|606315_606705_-|glycine-cleavage-system-protein-GcvH
MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYADGWIFKIKASDEAQVAALLDATAYEALLEDE
>NC_015663.1|WP_002916480.1|606729_607824_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTPGKALYTGMLTASAGVIDDLIVYFLSEDYFRLVVNSATREKDLAWISEQAEPYGLEITVRDDLSLIAVQGPQAKAKAATLFTDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEQAADFWRGLLDAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWEPADRNFIGREALEMQREKGTEQLVGLVMTEKGVLRGGLPVRFTDSDGNQKEGIITSGTFSPTLGYSIALARVPAGIGDTAVVQIRNREMPVKVTKPGFVRNGKAIV
>NC_015663.1|WP_015703429.1|608246_609449_-|FAD-dependent-2-octaprenylphenol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQAAPQPLDADAPPALRVSAINAASEKLLDKLGVWSEIIAQRASCYHGMEVWDKDSFGRISFDDQSMGFSHLGHIIENAVVHHALWQKAQRCADVTLLAPAQLQQVAWGENEAFLSLQDGSMLTARLVVGADGANSWLRNKADIPLTFWDYRHHALVATIRTTEPHQAVARQAFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQADAAAFNQALNIAFDNRLGLCQLESDRQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLHAQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFREMFSGSHPAKKFLRDMGLKLADSLPGVKPQLIRQAMGLNDLPAWLR
>NC_015663.1|WP_015703430.1|609459_610638_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MSVLIVGGGMTGATLALAISRLTGGALPVHLIEAQDPASSRHPGFDDRAIALAAGTCQQLARIGIWQNLAKRATPIQRVHVSDRGHAGFVNLAAADYGLSALGQVVELHDVGQRLFSLLREAPGVTLHCPAKVEAVNRSQDSVSLTLDSGETINGKLLVAADGSRSSLGARCGISWQQQPYEQLAIIANVSTALPHEGRAFERFTEHGPLAMLPMSQGRCSLVWCHPQSRRDEVLSWSDERFCQQLQQAFGWRLGRITHAGKRSVYPLALTTAIRSVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAEMLADAHALGEDVGNYSLLCRYQARRADDKAATIGVTDGLVHLFANRWAPLVAGRNVGLMAMELFTPARDALAQRTLGWVPR
>NC_015663.1|WP_015703431.1|610634_611951_-|Xaa-Pro-aminopeptidase
MTQQEFLSRRQALLAQMQPGSAALIFAAPEAVRSADSEYPYRQNSDFWYFTGFNEPEALLVLIKSDETHNHSVLFNRVRDLTAEIWFGRRLGQDAAPGKLGVDRALAFSEINQQLYQLLNGLDAIYFAQGEYAYADEIVFNALEKLRKGSRQNLQAPNSVIDWRPVVHEMRLFKSAEELEVMRRAGEISALAHTRAMEKCRPGMFEYQLEGEILHEFNRHGARFPSYNTIVGGGENACILHYTENESELRDGDLVLIDAGCEYRGYAGDITRTFPVNGKFSKPQREIYDIVLESLETALELYRPGTSIYEVNQEVVRIMINGLVRLGILKGEIDELIANNAHRPYFMHGLSHWLGLDVHDVGNYDTDRSRVLEPGMVLTVEPGLYIATDADVPAQYRGIGIRIEDDIVITEDGNENLTASVVKKADEIEALMAAARQS
>NC_015663.1|WP_015703432.1|611976_612555_-|YecA-family-protein
MSIQNEMPGYNDVDQLLNQQGVGLTPAEMHGLISGILCGGNTDSSWQPLVHDLTNEGLAFGHELAQALRSMHSATSDSLEDDGFLFQLYMPEGDNVSVFDRADALAGWVNHFLLGLGVTQPKLDKVKDETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFARQQPTAPEVRKPTLH
>NC_015663.1|WP_004205298.1|612721_613051_+|cell-division-protein-ZapA
MSAQPVDLQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLEQGRISERPGSKFE
>NC_015663.1|WP_015703433.1|613375_613972_+|5-formyltetrahydrofolate-cyclo-ligase
MTIQPDIPLSRQQIRQQIRERRRALSAEQQQRFALQAAERMMAYPPVVLAHTVALFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSPGNLLFLHYHPQSQLIFNRLKIYEPRLDVRDVLPLAELDVLITPLVAFDASGQRLGMGGGFYDRTLQNWRQYRLQPVGYAHDCQQVGTLPSEQWDIPLPAVITPGKTWRW

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Crispr_ID: NC_015663_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015663_2

1381876-1381957

Orphan

Consensus_repeat	Method
CCGGGTGGCGGCTAGCGCCTTATCCGG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NC_015663_2

>merge|NC_015663|2|1381876-1381957|CRISPRCasFinder
CCGGGTGGCGGCTAGCGCCTTATCCGGCCTACGGTCTGATAGCTCGAGCAAGCCCCCGGGTGGCGGCTAGCGCCTTACCCGG

>NC_015663|2|2|1381876-1381957|CRISPRCasFinder
CCGGGTGGCGGCTAGCGCCTTATCCGG	CCTACGGTCTGATAGCTCGAGCAAGCCC
CCGGGTGGCGGCTAGCGCCTTACCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015663.1\|WP_015703851.1\|1387210_1387990_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NC_015663.1\|WP_015703855.1\|1389957_1391391_-\|PTS-N-acetylmuramic-acid-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|181971
NC_015663.1\|WP_015703853.1\|1388700_1389510_-\|lipoprotein-NlpA	unknown	unknown	gnl\|CDD\|182119
NC_015663.1\|WP_015703838.1\|1375885_1376896_+\|hypothetical-protein	unknown	unknown	unknown
NC_015663.1\|WP_015703849.1\|1385189_1386239_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NC_015663.1\|WP_015703842.1\|1378707_1379028_+\|toxin	unknown	unknown	gnl\|CDD\|369065
NC_015663.1\|WP_015703841.1\|1378360_1378687_+\|type-IV-toxin-antitoxin-system-YeeU-family-antitoxin	unknown	unknown	gnl\|CDD\|368768
NC_015663.1\|WP_015369100.1\|1391415_1392318_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NC_015663.1\|WP_015703848.1\|1383721_1384729_+\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214
NC_015663.1\|WP_015703850.1\|1386235_1387189_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|181818
NC_015663.1\|WP_015703837.1\|1375134_1375824_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NC_015663.1\|WP_015703844.1\|1379856_1380051_-\|toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|310261
NC_015663.1\|WP_015703840.1\|1377877_1378348_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NC_015663.1\|WP_015703852.1\|1388157_1388700_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NC_015663.1\|WP_015703847.1\|1382020_1383217_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369347
NC_015663.1\|WP_015703846.1\|1380698_1381736_+\|virulence-RhuM-family-protein	unknown	unknown	gnl\|CDD\|226452
NC_015663.1\|WP_015703843.1\|1379274_1379841_+\|hypothetical-protein	unknown	unknown	unknown
NC_015663.1\|WP_015369108.1\|1384729_1385032_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NC_015663.1\|WP_015703839.1\|1376988_1377810_+\|DUF945-domain-containing-protein	unknown	unknown	gnl\|CDD\|377596
NC_015663.1\|WP_015703845.1\|1380187_1380475_+\|type-I-addiction-module-toxin,-SymE-family	unknown	unknown	gnl\|CDD\|237442

Protein	Function_ID	Function_description	E-value
NC_015663.1\|WP_015703851.1\|1387210_1387990_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	4.19369e-19
NC_015663.1\|WP_015703855.1\|1389957_1391391_-\|PTS-N-acetylmuramic-acid-transporter-subunit-IIBC	gnl\|CDD\|181971	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed.	0
NC_015663.1\|WP_015703853.1\|1388700_1389510_-\|lipoprotein-NlpA	gnl\|CDD\|182119	PRK09861, PRK09861, lipoprotein NlpA.	0
NC_015663.1\|WP_015703849.1\|1385189_1386239_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NC_015663.1\|WP_015703842.1\|1378707_1379028_+\|toxin	gnl\|CDD\|369065	pfam06755, CbtA_toxin, CbtA_toxin of type IV toxin-antitoxin system. CbtA is a family of bacterial and archaeal toxins of type IV toxin-antitoxin system. Toxins from such systems in free-living bacteria inhibit cell growth by targeting essential functions of cellular metabolism. In this case the toxin inhibits cell-division leading to changes in morphology and finally lysis, by interacting with two essential cytoskeletal proteins, FtsZ and MreB. For FtsZ it inhibits its GTPase activity and GTP-dependent polymerization, and for MreB it inhibits its ATP-dependent polymerization. These actions of CbtA appear to occur simultaneously. he cognate antitoxin family is represented by pfam06154.	1.58847e-55
NC_015663.1\|WP_015703841.1\|1378360_1378687_+\|type-IV-toxin-antitoxin-system-YeeU-family-antitoxin	gnl\|CDD\|368768	pfam06154, CbeA_antitoxin, CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A. CbeA_antitoxin is a family of cognate antitoxins to the CbtA toxins that act by inhibiting the polymerization of cytoskeletal proteins, see pfam06755. These are classified as a type IV toxin-antitoxin system. The family includes three proteins from E. coli YagB, YeeU and YfjZ, which act not by forming a complex with CbtA but through acting as antagonists to the CbtA toxicity, by stabilizing the CbtA target proteins. For example, YeeU binds directly to both MreB and FtsZ and enhances the bundling of their filaments in vitro. YeeU is also able to neutralize the toxicity caused by other MreB and FtsZ inhibitors, such as A22 [S-(3, 4-dichlorobenzyl)isothiourea] for MreB, and SulA and DicB for FtsZ. Thus CbeA, for cytoskeleton bundling-enhancing factor A, is proposed as a general name for all of these antitoxin proteins.	1.99218e-64
NC_015663.1\|WP_015369100.1\|1391415_1392318_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	2.52434e-176
NC_015663.1\|WP_015703848.1\|1383721_1384729_+\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NC_015663.1\|WP_015703850.1\|1386235_1387189_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	2.20895e-106
NC_015663.1\|WP_015703837.1\|1375134_1375824_+\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.81762e-15
NC_015663.1\|WP_015369108.1\|1384729_1385032_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	1.97611e-26
NC_015663.1\|WP_015703840.1\|1377877_1378348_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	3.18058e-60
NC_015663.1\|WP_015703852.1\|1388157_1388700_+\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	4.40549e-36
NC_015663.1\|WP_015703847.1\|1382020_1383217_-\|hypothetical-protein	gnl\|CDD\|369347	pfam07396, Porin_O_P, Phosphate-selective porin O and P. This family represents a conserved region approximately 400 residues long within the bacterial phosphate-selective porins O and P. These are anion-specific porins, the binding site of which has a higher affinity for phosphate than chloride ions. Porin O has a higher affinity for polyphosphates, while porin P has a higher affinity for orthophosphate. In P. aeruginosa, porin O was found to be expressed only under phosphate-starvation conditions during the stationary growth phase.	0.00513664
NC_015663.1\|WP_015703846.1\|1380698_1381736_+\|virulence-RhuM-family-protein	gnl\|CDD\|226452	COG3943, COG3943, Virulence protein [General function prediction only].	0
NC_015663.1\|WP_015703844.1\|1379856_1380051_-\|toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|310261	pfam05534, HicB, HicB family. This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches.	0.00465629
NC_015663.1\|WP_015703839.1\|1376988_1377810_+\|DUF945-domain-containing-protein	gnl\|CDD\|377596	pfam06067, DUF932, Domain of unknown function (DUF932). Family of prokaryotic proteins with unknown function. Contains a number of highly conserved polar residues that could suggest an enzymatic activity.	5.77968e-61
NC_015663.1\|WP_015703845.1\|1380187_1380475_+\|type-I-addiction-module-toxin,-SymE-family	gnl\|CDD\|237442	PRK13605, PRK13605, endoribonuclease SymE; Provisional.	3.63473e-18

>NC_015663.1|WP_015703846.1|1380698_1381736_+|virulence-RhuM-family-protein
MAKENITSSPAGEFIMFASEDGEVRVECRFEQETLWLPQATIASLYQVTPQAVTQHIKAIYEEGELEQNATCKSYLQVQQEGSRQVSRNRLHYSLPVILAVGYRVRSSRGTQFRQWATQTLQEYLIKGFVMDDERLKNPPVGSSAVPDYFDEMLERIRDIRASERRVYLRVREIFALAADYQPSLKETTQFFQTIQNKLHFACTRHTAAELIHQRADASQPHMGLSSYRGEEVNKGDVTVAKNYLTQDEVSELNRVVNMWLDFAEDQARRRQQVFLRDWQDKLDQFLQFNDREVLQGAGKVSKKMADEKAQAEYSQFAEQQRRLKEAEGEKDIAGLLQWKTEPKK
>NC_015663.1|WP_015703845.1|1380187_1380475_+|type-I-addiction-module-toxin,-SymE-family
MADLHSTPDITVSGTERQLLVGYRPNGRDTSTPSLTLSGKWLREAGFDTGKAVTVKVMDGCIVLLPLSDKEEKLTAELRHIQQSLKSVNGTLQHT
>NC_015663.1|WP_015703844.1|1379856_1380051_-|toxin-antitoxin-system-HicB-family-antitoxin
MSTAKRDTNQSKCGKAPTFQIRITPELKAQFEAAAADAGMSLGNWLKTLGRKELERLGIETADK
>NC_015663.1|WP_015703843.1|1379274_1379841_+|hypothetical-protein
MSLMLSITMVIVTLISPVVAVQVQKFIKRYTDRKTLKIDIFKQLMATRSQNARLSNEHVRALNMIDIAFYGRVRKGQAKRSKAESQVISAWKLYFSHLNTTYPNNDNASGLIWNQNSNNLFVDLLSAIAKDIGYDFERVQLQTAIYSPIAHGEIENDQLKIRKGLASIFSDDGAIKMEIVGIPSRTES
>NC_015663.1|WP_015703842.1|1378707_1379028_+|toxin
MNTQPATTPQAAKPCLSPLAVWKMLLTILLDQHYGLTLNDTPFSDETVIQKHIEAGITLADAINFLVERYELVRIDQKGFSVQDQEPWLTSMDVHRARFKLNVERL
>NC_015663.1|WP_015703841.1|1378360_1378687_+|type-IV-toxin-antitoxin-system-YeeU-family-antitoxin
MSLIPAHEWGLQREIVPRFGARLVQEGNRLHYLADRASLMGNFSDTECFKLNDAFPHFISQMESMLTTGELIPCHQHCVTLYHNGFTCEADTLGSCGYVYIAVYPTQR
>NC_015663.1|WP_015703840.1|1377877_1378348_+|DNA-repair-protein-RadC
MSAPNLFPEFPVNEQRVIQRALRLLEKYQRQPSESFTSTSVTKAWLQLRMAHLEREAFIVMYLDNQHCLLERETLFTGTLSHTEVHPREVVKSALKHNAAAVILAHNHPSGTTEISQQDKHITQRIVKALALVEVRVLDHLVVGNETISFAELGLL
>NC_015663.1|WP_015703839.1|1376988_1377810_+|DUF945-domain-containing-protein
MTRLASRFGAVNLVRRDRPLTHDELAHYVPSVFSEEKHESRSERYTYIPTITLLDNLQREGFQPFFACQTRVRDLSKREHTKHMLRLRREGQITGKQVPEIILLNSHDGSSSYQMLPGLFRSVCQNGLICGESFGEVRVPHKGNVVEKVIEGAYEILGIFDRVEEKRDAMQSLMLPPPAQHAIAKAALTYRFGEEHQPVTESQILSPRRWQDESNDLWTTYQRIQENLIKGGLSGRTIKGKRAHTRAVKGIDGDVKLNRALWVMAENMLQFAS
>NC_015663.1|WP_015703838.1|1375885_1376896_+|hypothetical-protein
MKMIIPLKTTILTVMLGASTFNASAAWQVSGTFCQSYTDDGRVLVRVRPATIGLIEQQPQCNGRGSTELAGSNFSVNGSSYPSSVMCNAQSNYQAVQTTTATKDIQNIISMLQDNQSVSINTFGSRSEVNTADFAQACSSIINQKVADFDPQKTYQQDMAKMGYKQDENGQWHKQSKQAYSREADPEIAANYDPKAGVAENSGKGGFYGDGANKNLYGPGSQAQKDAEAANEARRLAAQNHMSKSATGITEPEMQAALAAAKKAYAANYDQETLASADFGSYKQAPSVPDPADKTQKLRVVEYEVFNPGYKTYDKVRVTLNASGAVTGTQVQYEGQ
>NC_015663.1|WP_015703837.1|1375134_1375824_+|WYL-domain-containing-protein
MSVNEQDSRYDRLAIRLSVIISRLLAGETLSLKSLVDEFGVSERTLQRDFNQRLIHLDILDENGRYRLNDCQPPDHSSGAFSFIRTTGIARIIPVQDRQLMNLLMNESGTSPCLIWHAPLKSHVALPEFFSRLVQAISQKRQITVLVEGQRHEALEPYRLIHYVEEWYLVVCQSGKIRVFALTSIGAVTLDEVRFKRREDISYLTAGEGFIAALPHFPLISDVIDTFRY
>NC_015663.1|WP_015703847.1|1382020_1383217_-|hypothetical-protein
MRKILLSLLLAAATSGLALADDGKPFPHIGWRSADNLAGLDFGGALRANYRYEDWKGSNYRNPPHLRFDTFRIDSSGFYDNYFFDAGFWFQDHRKYAIDRAYVGYRFDNNNNIQLGIPGKPFGLEPYPQFGWSYGIPFYLGFGVSAGSGVNYQYHDNNWSLDVAYFPWMEPENLRYAPDVGDYDRLKNTIYPTQHQQHNEKRDQVNVRIARDFHGGGWNNELGGSLALARLHNRETDDDGTFWAAGVHGMLHNGPWQLTSQLIRYQYDPKNPAGVSDDTILMGGNGLTPAYLIPAKATTASLNVARDVDVKWGGVSKLRFYNDYSVLWKDKSGWSDSQMNTLGVQVFALPVMFWVDLSWAKNVNPWGGALNATGWTSTQSEGSGKWYFRTNVNIGYYF
>NC_015663.1|WP_015703848.1|1383721_1384729_+|zinc-binding-alcohol-dehydrogenase-family-protein
MKAIAITQAAADGNNIPFLRDIDLPDPQAQGHDLLVEVKAISVNPVDTKVRAGFNADTPRVLGWDAVGVVKAVGDAVTLFTPGDEVWYAGALGRPGSNSELQLVDERIVALKPRSLENAAAAALPLTAITAWELLFHRLGVQEGGNAGDTLLIVGAAGGVGSILTQLASKLTNMTVIGTASRPESQKWVREAGAHHVIDHSKPLGEELAKIGIHAVTHVASLTNTDQHFNELIAALAPQGKLALIDDPESLDVVPLKAKSISLHWEFMFTRSMFETDDMIAQHQLLTRVAALIDDNTLRTTLGEHYGTINAANLQKAHVKLETGRSVGKIVLEGF
>NC_015663.1|WP_015369108.1|1384729_1385032_+|antibiotic-biosynthesis-monooxygenase
MRDDTIALIAVLKAKAGQTEALRDALQALLLPTREEPGNLDYALFQLRDAPDTFYMRESWRDQQALDEHIAQPYFQAFIGQMESLLAEPLRLDYLTPIAP
>NC_015663.1|WP_015703849.1|1385189_1386239_+|NAD(P)-dependent-alcohol-dehydrogenase
MQINAIGTYSASQPLESMSITRREPGPQDVQIAIAYCGVCHSDLHQARAEWAGTLYPCVPGHEIVGRVTAVGDAVSGYAVGDLVGVGCMVDSCKQCEECAEGLENYCDHMVLTYNGPTQDAPGHTLGGYSQQIVVNERYVLRINHPEAQLAAVAPLLCAGITTYSPLRHWHAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSESKRDAARALGADEVVVSRNEDEMAAHVKSFDFILNTVAAPHNLDAFTTLLKRDGTMTLVGAPATPHPSPEVFNLIFRRRSIAGSMIGGIPETQEMLDFCAEHGIVADIELIRADQINEAWERMVKGDVKYRFVIDSSTLAG
>NC_015663.1|WP_015703850.1|1386235_1387189_-|helix-turn-helix-domain-containing-protein
MTLTDVAIVAVEGFSPFHYSVPCMLFGDTVSETKRFNLQICAEQPGLLSARDGFALYASGDFTAMEQADIVVVPYWGEVNQRPPQALIASLVRARDNGAEIVGLCLGAFVLGYAGLLDGKRAATHWEFEQDFQRLFPQVRLDINALYVDDQKVITSAGTAAALDCCLYIIRQRFGSLAANQIARRMIVPPHREGGQAQFIAQPVPRNTRDARINCLLDYLQQHIAEPHNLDSLAEVVAMSRRTLTRHFARATGMSIADWLTAERLRRSQSLLEAGDLPVEQVAEAVGYLSAVTWRQQFKARFGVSPTEWRRTFRRGV
>NC_015663.1|WP_015703851.1|1387210_1387990_-|MBL-fold-metallo-hydrolase
MNITHIRNATQIIEYAGKKFLIDPMLADKGAWPGFPGTARSELRNPLVALPFSREKIIDVDAVIVTHTHDDHWDEAAIATIPKTLPVFVQHEADAALLRSQGFQDIRLLSANSEFAGVNLQKTTSGQHGSDRTYAVPAMAERLGEACGVVFRHPQEKTLWLVGDTIWRDEIEADMLKLRPDVVVLNAGYAHVIGFGPIIMGKEDLLKAHFALPEAKIMAIHLEAVNHCLVSREEMRQYVADNQIAGVVSIPQDGETVVY
>NC_015663.1|WP_015703852.1|1388157_1388700_+|NUDIX-hydrolase
MKKKLTAADMHNPLVIAETPWFSMRKVGIDVAPGERRDFYSIHYPRPAVGIVALQDDKVLLIRHYRYLIDKVVWAIPSGGVDEGEEPAVAALRELREETGWQAQHAEEIIRYNPSYGSSDQLFITWLATDLSWVGMDADQDEVMETGWFTFEEINQLIARGEMPDGLSLVPLLHLMAQRR
>NC_015663.1|WP_015703853.1|1388700_1389510_-|lipoprotein-NlpA
MKLRLRTAAAVMLAGLLLAGCDQKNDNAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNAGELDANVFQHRPYLEQDNKAHGYHLVAIGNTFVFPMAGYSRKIKSVADIKDGATIAIPNDPTNLGRALLLLQKEQLITLKAGTGLLPTAVDITSNPRNLKIMELEGAQLPRVLDDPKVDVAIISTTYLQQTGLSPVRDGIFIEDKNSPYVNIIVAREDNKDAENVKEFMQSYQSPEVAKAAETIFNGGAVPGW
>NC_015663.1|WP_015703855.1|1389957_1391391_-|PTS-N-acetylmuramic-acid-transporter-subunit-IIBC
MAKITKEMIARILAHVGGAANVAQAGNCMTRLRLTLRDESLADSAAIRQIDGVMGVIVSDEQFQVVLGPGKAQTAAEMMNGLMEAAPQAAASLADVAAEKKQALKSKQTSGVQKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQIFVLENAHPNASLVALIGYMKVFSKGMFTFLSILIGYNAQKAFGGSGVNGAIIASLFVLGYNPEATNGFYAGISAFFGHSIDPRGNIIGVLIASILGAWVERQVRRIMPANLDMILTSAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLHLNGNPFGSAVLAGLFLLAVMFGVHQGFVPVYFALVDAQGFNSLFPILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAIIPGFLGIGEPLIYGVTLPRMKPFITACIGGACGGFFVGLIAWLGLPVGLNTVFGPSGLVALPLMTSGSGIYAGMAVYAGGLAVSYLCGFVLTWLFASKNVDLS
>NC_015663.1|WP_015369100.1|1391415_1392318_-|N-acetylmuramic-acid-6-phosphate-etherase
MSIDLSKLLTERRNANSANIDTLSTVDMLTVINQEDQQVAQAITPYLPQIAEVVDKVAAALRAGGRLIYIGAGTSGRLGILDASECPPTFGTRPEQVVGIIAGGHKAILSAVENVEDNKAQGAMDLQNLNFSNRDVLVGLAASGRTPYVIGAMEYAHSQNAFVAIVSCNPHGEMAQLADVAITPVVGPEVVTGSTRLKAGTAQKLVLNMISTGAMIRIGKVYSNLMVDVEATNAKLIERQVSIVMEATDCDRATAQNALDACGRHCKTAIVMVLADLSAAEAQSLLAKNNGYIRKALSNT

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Crispr_ID: NC_015663_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015663_3

1858193-1858314

Orphan

Consensus_repeat	Method
TCCCGGCTTTCGCTACGCTCAGCCGGGCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015663_3

>merge|NC_015663|3|1858193-1858314|CRISPRCasFinder
TCCCGGCTTTCGCTACGCTCAGCCGGGCTACGGTTTGCGCCGTGAGCGAGCTGTAGCCCGGGTAAGGCGGAACGCCGCGACCCGGGAAATTTCCCGGCTTACGCTACGCTCAGCCGGGCTAC

>NC_015663|3|3|1858193-1858314|CRISPRCasFinder
TCCCGGCTTTCGCTACGCTCAGCCGGGCTAC	GGTTTGCGCCGTGAGCGAGCTGTAGCCCGGGTAAGGCGGAACGCCGCGACCCGGGAAATT
TCCCGGCTTACGCTACGCTCAGCCGGGCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015663.1\|WP_015368685.1\|1858377_1858683_-\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NC_015663.1\|WP_015704089.1\|1860644_1861436_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321
NC_015663.1\|WP_015704088.1\|1859741_1860425_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|163429
NC_015663.1\|WP_015368696.1\|1848056_1848509_-\|phosphonate-C-P-lyase-system-protein-PhnG	unknown	unknown	gnl\|CDD\|377702
NC_015663.1\|WP_015368695.1\|1848509_1849235_-\|phosphonate-metabolism-transcriptional-regulator-PhnF	unknown	unknown	gnl\|CDD\|182227
NC_015663.1\|WP_026612426.1\|1852534_1853473_-\|transcriptional-regulator-MelR	unknown	unknown	gnl\|CDD\|182416
NC_015663.1\|WP_015704087.1\|1857813_1858185_+\|plasmid-stabilization-protein	unknown	unknown	gnl\|CDD\|119304
NC_015663.1\|WP_015368679.1\|1861924_1863256_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|236882
NC_015663.1\|WP_015704091.1\|1868370_1868937_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|99777
NC_015663.1\|WP_047054350.1\|1855157_1856573_+\|melibiose:sodium-transporter-MelB	unknown	unknown	gnl\|CDD\|182453
NC_015663.1\|WP_015704083.1\|1850981_1852484_+\|glycine-betaine/L-proline-transporter-ProP	unknown	unknown	gnl\|CDD\|182611
NC_015663.1\|WP_015704081.1\|1850110_1850446_-\|phnA-family-protein	unknown	unknown	gnl\|CDD\|182315
NC_015663.1\|WP_015704080.1\|1849391_1849826_-\|VOC-family-metalloprotein-YjdN	unknown	unknown	gnl\|CDD\|236656
NC_015663.1\|WP_015368684.1\|1858682_1859600_-\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NC_015663.1\|WP_015368678.1\|1863248_1865264_-\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	unknown	unknown	gnl\|CDD\|184754
NC_015663.1\|WP_015368687.1\|1856847_1857804_+\|plasmid-stability-protein-StbA	unknown	unknown	gnl\|CDD\|310773
NC_015663.1\|WP_015704090.1\|1861493_1861928_-\|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD	unknown	unknown	gnl\|CDD\|184756
NC_015663.1\|WP_015704092.1\|1869267_1869555_+\|PerC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|310570
NC_015663.1\|WP_032706926.1\|1865272_1867720_-\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	unknown	unknown	gnl\|CDD\|236644
NC_015663.1\|WP_015704085.1\|1853712_1855065_+\|alpha-glucosidase/alpha-galactosidase	unknown	unknown	gnl\|CDD\|185035

Protein	Function_ID	Function_description	E-value
NC_015663.1\|WP_015368685.1\|1858377_1858683_-\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	3.64328e-57
NC_015663.1\|WP_015704089.1\|1860644_1861436_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	2.60325e-46
NC_015663.1\|WP_015704088.1\|1859741_1860425_-\|TerC-family-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	2.33793e-69
NC_015663.1\|WP_015368696.1\|1848056_1848509_-\|phosphonate-C-P-lyase-system-protein-PhnG	gnl\|CDD\|377702	pfam06754, PhnG, Phosphonate metabolism protein PhnG. This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase.	1.20212e-62
NC_015663.1\|WP_015368695.1\|1848509_1849235_-\|phosphonate-metabolism-transcriptional-regulator-PhnF	gnl\|CDD\|182227	PRK10079, PRK10079, phosphonate metabolism transcriptional regulator PhnF; Provisional.	3.79681e-164
NC_015663.1\|WP_026612426.1\|1852534_1853473_-\|transcriptional-regulator-MelR	gnl\|CDD\|182416	PRK10371, PRK10371, transcriptional regulator MelR.	0
NC_015663.1\|WP_015704087.1\|1857813_1858185_+\|plasmid-stabilization-protein	gnl\|CDD\|119304	pfam10784, Plasmid_stab_B, Plasmid stability protein. This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.	1.64202e-11
NC_015663.1\|WP_015368679.1\|1861924_1863256_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	0
NC_015663.1\|WP_015704091.1\|1868370_1868937_+\|response-regulator-transcription-factor	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	2.72204e-05
NC_015663.1\|WP_047054350.1\|1855157_1856573_+\|melibiose:sodium-transporter-MelB	gnl\|CDD\|182453	PRK10429, PRK10429, melibiose:sodium transporter MelB.	0
NC_015663.1\|WP_015704083.1\|1850981_1852484_+\|glycine-betaine/L-proline-transporter-ProP	gnl\|CDD\|182611	PRK10642, PRK10642, proline/glycine betaine transporter ProP.	0
NC_015663.1\|WP_015704081.1\|1850110_1850446_-\|phnA-family-protein	gnl\|CDD\|182315	PRK10220, PRK10220, phnA family protein.	2.02762e-74
NC_015663.1\|WP_015704080.1\|1849391_1849826_-\|VOC-family-metalloprotein-YjdN	gnl\|CDD\|236656	PRK10148, PRK10148, VOC family metalloprotein YjdN.	1.46864e-76
NC_015663.1\|WP_015368684.1\|1858682_1859600_-\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NC_015663.1\|WP_015368678.1\|1863248_1865264_-\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	gnl\|CDD\|184754	PRK14582, pgaB, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB.	0
NC_015663.1\|WP_015368687.1\|1856847_1857804_+\|plasmid-stability-protein-StbA	gnl\|CDD\|310773	pfam06406, StbA, StbA protein. This family consists of several bacterial StbA plasmid stability proteins.	1.808e-144
NC_015663.1\|WP_015704090.1\|1861493_1861928_-\|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD	gnl\|CDD\|184756	PRK14584, hmsS, hemin storage system protein; Provisional.	1.54411e-61
NC_015663.1\|WP_015704092.1\|1869267_1869555_+\|PerC-family-transcriptional-regulator	gnl\|CDD\|310570	pfam06069, PerC, PerC transcriptional activator. PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.	4.68734e-22
NC_015663.1\|WP_032706926.1\|1865272_1867720_-\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	gnl\|CDD\|236644	PRK10049, pgaA, outer membrane protein PgaA; Provisional.	0
NC_015663.1\|WP_015704085.1\|1853712_1855065_+\|alpha-glucosidase/alpha-galactosidase	gnl\|CDD\|185035	PRK15076, PRK15076, alpha-galactosidase; Provisional.	0

>NC_015663.1|WP_015704087.1|1857813_1858185_+|plasmid-stabilization-protein
MTLDRRKVLIYLRPDISASERFADAKIEAHHRGDRGDMSRTALLAGLALGEVDSRLPSMLAALLAEDTPPETLRRMLASFLEIQPASSAPASAPAAAPVKAPEPPAPVSESVSARNLAGSLPD
>NC_015663.1|WP_015368687.1|1856847_1857804_+|plasmid-stability-protein-StbA
MRIFIDDGSTNIKMLWEQDGETFTHISPNSFKRGWSATFGAGKPFNYTVDDEKYSFDLITPDALPTNNIDWQYSPLNSIAVHHALLTSGLEPQDVEIVVTLPLTEFYDEDAQYRLDNIERKKKSLLREVKLNKGVVFNITKVTVRPESIPAGISLCDELKPSHSVLIVDLGGTTLDISMVAGQMTSVSRIYGDPKLGVSLVTDAVKLALARANTDTSSYNVDQIIINRHDEEYLTDNINDPDAVSEVKKVISNSIERLTTRVLTAIDSFKGYSHAIVIGGGAPLVADAIRERMGLREDRFVVADEPQFALVRGLKIIG
>NC_015663.1|WP_047054350.1|1855157_1856573_+|melibiose:sodium-transporter-MelB
MSISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDIVGLSVGVVGTLFLVARILDAIADPIMGWIVNCTRSRWGKFKPWILIGTITNSVVLYMLFSAHHFSGGALLAWVWLTYLLWGFTYTIMDVPFWSLVPTITLDKREREQLVPYPRFFASLAGFVTAGVTLPFVSAVGGADRGFGFQMFTLVLIAFFVISTLVTLRNVHEVYSSDSGVSEDSSHLSLRQMVALIYKNDQLACLLGMALAYNTAANIIAGFAIYYFTYVIGSAEMFPYYMSYAGAANLLTLILFPRLVKGLSRRILWAGASIMPVLGCGVLLLMALSGVYNIALISLAGVLLNIGTALFWVLQVIMVADTVDYGEYTMNIRCESIAYSVQTLVVKAGSAFAAWFIAIVLGIIGYVPNTAQSPHTLLGMQAIMIALPTLFFALTLFLYFRYYKLNGDMLRRIQIHLLDKYRRVPENVVEPERPIVVPNQV
>NC_015663.1|WP_015704085.1|1853712_1855065_+|alpha-glucosidase/alpha-galactosidase
MSAPKITFIGAGSTVFVKNILGDVFQRPALKSAHIALMDIDETRLEESHTVVRKLMDSVGANGEISCHRDRKTALRDADFVVVAFQIGGYEPCTVTDFEVCKRHGLEQTIADTLGPGGIMRALRTIPHLWAICDDMTEVCPNATMLNYVNPMAMNTWAMYARYPHIKQVGLCHSVQGTAEELARDLNLDPADLRYRCAGINHMAFYLSLEKKLADGSYVSIYPDLLQAYAEGRVPKPNLHGNPRCENIVRYEMFKKLGYFVTESSEHFAEYTPWFIKPGRDDLIARYKVPLDEYPKRCVEQLANWHKELESYKSGERIEVKPSREYASTIMNAIWTGEPSVVYGNVRNDNLIDNLPQGCCVEVACLVDANGIQPTKVGALPAHLAALMQTNINVQTLLTQAILNEDRDYVYYATMMDPHTAAVLGIEEIYALVDDLIASHGDWLPAWLHR
>NC_015663.1|WP_026612426.1|1852534_1853473_-|transcriptional-regulator-MelR
MEHRFTSLPPDPHMCSSDEKQSRSPLALYSEYQRMDIELRPPHAMATSHWHGQVEVNVPFDGDVEYLINNEVVRIEKGYITLFWACTPHQLTRPGDCQQMAIFNLPMHLFLSWPLDRELINHVTHGMVIKSLAAQQLSAFEVRRWQQELNHENEQIRQLAIDEIALMLKRLSLAGWQPILVNKTSRTHKNSVSRHAQFYVSQMLEFIAAHYDQALTVDAVAEHVKLNPNYAMGVFQRVMQQTMKQYITAMRINHVRALLSDTDKTILDIALTAGFRSSSRFYSTFTRYVGMPPQQYRKLSQQRRHSLAPPQP
>NC_015663.1|WP_015704083.1|1850981_1852484_+|glycine-betaine/L-proline-transporter-ProP
MLKRKKIKPITLRDVTIIDDSKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPDADPSVQMIAALGTFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVMGAGVVVLISSVVGEENFLDWGWRIPFFLALPLGIIGLYLRHALEETPAFQQHVDTLEQGDREGLQEGPKVSFKEIATKHWRSLLTCIGLVISTNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMVGMLFVQPVIGMLSDRFGRRPFILVGSVALFALSIPAFIMINSNVIGLIFAGLLLLAVVLNCFIGVMASSLPAMFPTHIRFSALASAFNISVLIAGLTPTLAAWLVETTQNLMMPAYYLMVIAVIGLITGLSMKETANRPLKGATPAASDIQEAKEILGEHYDNIEHKIEDIDQEIADLQEKRARLVQQHPRIND
>NC_015663.1|WP_015704081.1|1850110_1850446_-|phnA-family-protein
MQLPHCPKCHSEYTYEDNGMYICPECAHEWNNAEPADDTDALIVKDANGNLLADGDSVTVVKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMKLKSEFVKKN
>NC_015663.1|WP_015704080.1|1849391_1849826_-|VOC-family-metalloprotein-YjdN
MSLSPYIAFSGNCAAAIAFYQQALGAQLIHQITYGEMPQSAQDAEDGCASGQHLAADCIAHASLQVADSILMLSDSPSSDMEHYAGFVLVLEPKDIAEGKHWFEALADGGRIEMAWQETFWAHGFGKVVDRFGVPWMVNVVKQP
>NC_015663.1|WP_015368695.1|1848509_1849235_-|phosphonate-metabolism-transcriptional-regulator-PhnF
MYLSRHPTSYPTRYQEIAARLEQELRHHYRCGDYLPAEQQLAARFEVNRHTLRRAIDQLVERGWVQRRQGVGVLVLMRPIDYPLNAQARFSQNLLEQGSHPTSEKLLSVLRPASSHVAEAFGIAEGETVIHLRTLRRVNGVALCLIDHYFADLRFWPVLQTFTHGSLHDLLRDQLAIELTRVRTKISARRAQAKESKLLEIPNMAPLLCVRTLNSREGETVTTEYSVSLTRADMIEFTMEH
>NC_015663.1|WP_015368696.1|1848056_1848509_-|phosphonate-C-P-lyase-system-protein-PhnG
MHFDTATRQRWMSVLAHSEPQDLLARMQSLRLAPEYELIRAPETGLVQLQARMGGIGDRFFAGDATLTRAAVRLADGTLGYSWILGRDRPHAERCAAIDGLLQSPHYFHTLMETLITPLEAQRSARLDARRAEVNASRVDFFTLVRGDNA
>NC_015663.1|WP_015368685.1|1858377_1858683_-|chaperone-modulator-CbpM
MAKVTVTFTITELCLRTGVSEEELTEIVGLGMIEPHQPQAETWLFDDSAVTIVHRAVRLRNELELDWPGIAVALTLLDENARLTRENRLLQQRLARFLTHS
>NC_015663.1|WP_015368684.1|1858682_1859600_-|curved-DNA-binding-protein
MELKDYYTILGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAKFKDLAEAWEVLKDDQRRAEYDQLWQHRNDPQFNRQQHAHEQSYSQQDFDDIFSSMFGQQAHHARRQRAERGHDVEIEVAVFLEETLTEQTRTISYKLPVYNVFGMVESETPKTLNVKIPAGVSDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDINGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTIPAGSQAGQRLRIKGKGLVSKTHTGDLFAVIKIVMPPKPDEKARELWQQLAESEASFDPRKTWGKA
>NC_015663.1|WP_015704088.1|1859741_1860425_-|TerC-family-protein
MNEILSQWDFAVILLQIIAIDLLLGGDNAVVIAMACRKLPAHLRTKAIVIGTLGAIIARVALLAVAIYLLSLPWLKIVGALLLLWIGIKLVANEEEESDISSSSSLWRTAVTITVADVIMSLDNVLAVAAAGKGHLLLVALGVLISIPIIVAGSKLVLAILTRFPSVVLLGGALIGWIAGSMMITDPTFVQLFPHSPNYLHFVAGAIGAALVLLEGWRRNYRSGTPE
>NC_015663.1|WP_015704089.1|1860644_1861436_+|thioredoxin-domain-containing-protein
MSGIKNLLILALAGASLLPALASAADAPAATFTAEQEARIGKIAADYLVAHPEVLLQASQKLQQIQAEQQASAATQAVIKNADKLTQDKATPTYGPANGKVTVIEFFDYQCIYCSRLAPVMEQVIKDHPQTRFAFKEWPIFGSRWATSLDAAKTGLQIYQQKGAEAYLTYHNGVYATGHNEGKLTAADIQQQAKKVNFDAKKAADVEPALENINQLAQEIGLSGTPGVIVMPTTGATEATITVFPGLADKASLDAAIKKAGGQ
>NC_015663.1|WP_015704090.1|1861493_1861928_-|poly-beta-1,6-N-acetyl-D-glucosamine-biosynthesis-protein-PgaD
MNEQTLILTEHRMLPRIFDGVLTAIAWAGFAFFLYANLLMQFTERGNDSWDAIMASFNTVLVYLLVAAINGWLLILWYQYNLRRYNARRHGSMASLRHEELAESFNIAPQIISEMSQYNLLTVYHDQIGRIIDLKINQNEEDER
>NC_015663.1|WP_015368679.1|1861924_1863256_-|poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MTDRIIAFSILCLVFGLPLGVAAVFTGELILDFVFFWPLFMSVLWITGGLYFWFQLERHWPWGKETPPPELAGNPLISILIPCFNEEKNARETIEAALAQRYRNIEVIAINDGSSDDTARVLNQLAEEYALLRVIHLAENQGKAVALKAGAAAARGDLLVCIDGDALLDRDTAAYLVAPLIQYPHVGAVTGNPRIRTRSTLIGRIQVGEFSSIIGLIKRTQRIYGRVFTVSGVIAAFRRQALADVGYWSPDMITEDIDISWKLQLRHWAIFFEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLVNLRRLFRWEHHRMWPLFLEYALSTLWAFAYAVTIFLFIASHFAPLPENLTVRSLFPPEFTGLLLGVMCLLQFIASLYIERRYERGVAGSLFWVIWFPMVYWMIGLLTTIVAFPKVMLKRKRARARWVSPDRGKGRMS
>NC_015663.1|WP_015368678.1|1863248_1865264_-|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB
MVNKSIRISLMVIGWLLMTCALRAETIPFLPPDARPQPEANKPWPQNKFLVLAYHDVEDDAADQRYLAVRTSALNDQIGWLLHNGYKAVSVQNILDANAGLITLPPKAFLLSFDDGYSSFYTRVWPLLKAWNVPALWAPVGSWVDTPEQKKVDFGGLMTPRERFATWEMVRELAQSPLVEIGAHTWASHYGIQANPQGSREPAVANRFYDKASGRYESDQQFHQRIDTDVRKVSDKIADVTGKAPRAWVWPYGAANGTSLAIAKSRGYQLAFTLGDGLGDVRDLDNIPRLLISGNPSIKAFASQVTQIQEREPVRVMHVDLDYVYDKDPAQQRKNIDKLIQRVYDMKITHVFLQAFSDPLGDGTVKALYFPNRRLPMRADLFNFVAWQLQTRGGVKVYAWMPVLAFDLDSALPRVQRWDAQSNTLRQATRPYVRLSPWNSQVRDEIRDIYQDLARYATFDGVLFHDDAVLTDYEDAGTGAMAAWRAAGHREDIAQIRQNPAALHAWTRFKSQALIDFTRTLSQSVKAIRGPQVRTARNIFALPILQPESEAWFAQNLDDFLAAYDWTVPMAMPLMESVPVAESDAWLARLVRAVSARPGALKKTIFELQAKDWTLPQQNAIPDQQLVDWMRTLQLNGVNNYGYYPDDFLNNQPDISKIRPLFSSYWYPNND
>NC_015663.1|WP_032706926.1|1865272_1867720_-|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA
MGRSTRFNKLFFYRRTTFSLSISLLLLTPILAQGAESIYDRHVLQAREGNYSPFLDYLQQYQQQHALTPEQVADWLQIASWAGRDEEVIQVWQRYQVYMALPARGTAAAAQAFRNQKRWSSALALWDQAIGQQPMNDDYLIGRIKTLADARHDGQALSEARRLVATTPSAAHLQTLSYVYLRQGKSWDQLLTDMRAQELAPQNRETLNSLLDSLSSNRINSPALQWSAKTTLTPAQQRKLEMDAAAEWVRLAHTPARGEQERFRLAQTALNRYDALFARWRQDPLAAEDLARARIDRLGALYTRGYYAQVIKEYQSLTAAQQPVPDWAIGWVISSYLAQQNVEAALAIARQHPLYRPDPQDDQHELFYALLDSGQYQAAREYLAKVTNGVPYTRRLYGSPTPQPNDPWLNAQSLKVQYLLSTNALPEAERLSDRLATTAPGNQGLRIDYAAILQARGLPRAAERELKAAEALEPSNIPLERQQAYVAMDLQEWRQMELLTDDLLARSPEDLSTQKLARAREVHHMSELRLNSTQGIHSDNPVSGSHDFSWDAAIYGPPIADKWRLFAGNRFAKGNFDEGKGSSRQLFGGIEWRPRDAWAELEISNNNFAGDNKPGARLSAWQSFNDSWQIGGEVERLSRQTPLRALRNGISANRGEGWVRWYQNERREYRFSAAATRFSDHNRRQEYTFSGKERLWQSPTITLDLEPGLSASVNSRADTLYYNPKRDFAATSALVADHVMYQHYDTVWSQQLAAGGGAYWQKAYSTGAIAMLGYGQRIRWNNVIDTGVMLNWDKRPYDGKRESNLSIALDANLRF
>NC_015663.1|WP_015704091.1|1868370_1868937_+|response-regulator-transcription-factor
MFLVTQDHYLFEGVRIFFPDIIQLHSIERKLFESDAEEFSVLVDSRAPLCFYDYLIPGAAEAGKRICCIMLDMRHREEHLLSLKWFLNMSLTPTDMANLFSLFLDVKSKRLTREWLKNFSLKPQEHMTLTLLRAGMTMEQIAGVLNTSVKSLYRKRIELYERLGLANFNEACLFIFKNRLLECPAQKR
>NC_015663.1|WP_015704092.1|1869267_1869555_+|PerC-family-transcriptional-regulator
MIKDSIAESLEARGLYRRAASRWVDVMQTCVDDNDREWIRMHRNKCLKKAKLPPARKEEFADIHKAARETQYRMGIAKPNGEVFRLPAKKKTTRR

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Crispr_ID: NC_015663_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015663_4

3152654-3152727

Orphan

Consensus_repeat	Method
CGGGTGGCGGCTACGCCTTACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015663_4

>merge|NC_015663|4|3152654-3152727|CRISPRCasFinder
CGGGTGGCGGCTACGCCTTACCCGGGCTACCCGCGGTGCCGTTTTTTTGTCGGGTGGCGGCTAACGCCTTACCC

>NC_015663|4|4|3152654-3152727|CRISPRCasFinder
CGGGTGGCGGCTACGCCTTACCCG	GGCTACCCGCGGTGCCGTTTTTTTGT
CGGGTGGCGGCTAACGCCTTACCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015663.1\|WP_015704835.1\|3164169_3164925_-\|molybdopterin-synthase-adenylyltransferase-MoeB	unknown	unknown	gnl\|CDD\|180204
NC_015663.1\|WP_015367574.1\|3143845_3144313_+\|manganese-binding-transcriptional-regulator-MntR	unknown	unknown	gnl\|CDD\|182927
NC_015663.1\|WP_015704833.1\|3160678_3163111_-\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	unknown	unknown	gnl\|CDD\|273798
NC_015663.1\|WP_015704836.1\|3164924_3166160_-\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|182643
NC_015663.1\|WP_015367575.1\|3143533_3143659_-\|manganase-accumulation-protein-MntS	unknown	unknown	gnl\|CDD\|380222
NC_015663.1\|WP_015704827.1\|3146725_3148102_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NC_015663.1\|WP_015704825.1\|3144309_3145422_+\|anion-transporter	unknown	unknown	gnl\|CDD\|238537
NC_015663.1\|WP_015704831.1\|3155639_3156941_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_015663.1\|WP_015704830.1\|3153260_3155624_-\|glycoside-hydrolase-family-31-protein	unknown	unknown	gnl\|CDD\|224418
NC_015663.1\|WP_015704829.1\|3150083_3150866_-\|tyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|379135
NC_015663.1\|WP_015367564.1\|3157237_3158311_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_015663.1\|WP_015367562.1\|3159712_3160528_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|272905
NC_015663.1\|WP_015367569.1\|3148970_3149885_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|182341
NC_015663.1\|WP_015704832.1\|3158307_3159573_-\|DUF1479-domain-containing-protein	unknown	unknown	gnl\|CDD\|369327
NC_015663.1\|WP_015704824.1\|3141687_3143265_-\|phosphoethanolamine-transferase	unknown	unknown	gnl\|CDD\|225105
NC_015663.1\|WP_015367567.1\|3151045_3152638_+\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NC_015663.1\|WP_015704834.1\|3163114_3164014_-\|glycyl-radical-enzyme-activating-protein	unknown	unknown	gnl\|CDD\|274163
NC_015663.1\|WP_015704826.1\|3145529_3146570_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381317
NC_015663.1\|WP_015704828.1\|3148162_3148879_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NC_015663.1\|WP_015704837.1\|3166339_3167281_+\|beta-aspartyl-peptidase	unknown	unknown	gnl\|CDD\|182319

Protein	Function_ID	Function_description	E-value
NC_015663.1\|WP_015704835.1\|3164169_3164925_-\|molybdopterin-synthase-adenylyltransferase-MoeB	gnl\|CDD\|180204	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional.	0
NC_015663.1\|WP_015367574.1\|3143845_3144313_+\|manganese-binding-transcriptional-regulator-MntR	gnl\|CDD\|182927	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR.	4.05373e-90
NC_015663.1\|WP_015704833.1\|3160678_3163111_-\|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme	gnl\|CDD\|273798	TIGR01774, Putative_formate_acetyltransferase_3, glycyl radical enzyme, PFL2/glycerol dehydratase family. This family previously was designated pyruvate formate-lyase, but it now appears that members include the B12-independent glycerol dehydratase. Therefore, the functional definition of the family is being broadened. This family includes the PflF and PflD proteins of E. coli, described as isoforms of pyruvate-formate lyase found in a limited number additional species. PFL catalyzes the reaction pyruvate + CoA -> acetyl-CoA + formate, which is a step in the fermentation of glucose.	0
NC_015663.1\|WP_015704836.1\|3164924_3166160_-\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|182643	PRK10680, PRK10680, molybdopterin biosynthesis protein MoeA; Provisional.	0
NC_015663.1\|WP_015367575.1\|3143533_3143659_-\|manganase-accumulation-protein-MntS	gnl\|CDD\|380222	NF033226, small_MntS, manganase accumulation protein MntS. Members of this family are MntS, a small protein of about 42 amino acids that seems to play assist bacteria in accumulating manganese when iron is limiting. It may function as a manganese chaperone, or may inhibit manganese efflux transporters.	8.63856e-23
NC_015663.1\|WP_015704827.1\|3146725_3148102_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	2.47116e-157
NC_015663.1\|WP_015704825.1\|3144309_3145422_+\|anion-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	1.22958e-91
NC_015663.1\|WP_015704831.1\|3155639_3156941_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.66786e-74
NC_015663.1\|WP_015704830.1\|3153260_3155624_-\|glycoside-hydrolase-family-31-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
NC_015663.1\|WP_015704829.1\|3150083_3150866_-\|tyrosine-protein-phosphatase	gnl\|CDD\|379135	pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This family is closely related to the pfam00102 and pfam00782 families.	1.80456e-72
NC_015663.1\|WP_015367564.1\|3157237_3158311_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.97726e-59
NC_015663.1\|WP_015367562.1\|3159712_3160528_-\|HAD-family-hydrolase	gnl\|CDD\|272905	TIGR00099, Uncharacterized_protein_MCAP_0867, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences. [Unknown function, Enzymes of unknown specificity].	3.62148e-67
NC_015663.1\|WP_015367569.1\|3148970_3149885_-\|L,D-transpeptidase	gnl\|CDD\|182341	PRK10260, PRK10260, L,D-transpeptidase; Provisional.	0
NC_015663.1\|WP_015704832.1\|3158307_3159573_-\|DUF1479-domain-containing-protein	gnl\|CDD\|369327	pfam07350, DUF1479, Protein of unknown function (DUF1479). This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.	0
NC_015663.1\|WP_015704824.1\|3141687_3143265_-\|phosphoethanolamine-transferase	gnl\|CDD\|225105	COG2194, COG2194, Predicted membrane-associated, metal-dependent hydrolase [General function prediction only].	6.8228e-111
NC_015663.1\|WP_015367567.1\|3151045_3152638_+\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NC_015663.1\|WP_015704834.1\|3163114_3164014_-\|glycyl-radical-enzyme-activating-protein	gnl\|CDD\|274163	TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA), benzylsuccinate synthase (BssD), gycerol dehydratase (DhaB2) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.	2.42439e-138
NC_015663.1\|WP_015704826.1\|3145529_3146570_+\|aldo/keto-reductase	gnl\|CDD\|381317	cd19091, AKR_PsAKR, Polaromonas Sp. aldo-keto reductase and similar proteins. The prototype of this family is an uncharacterized aldo-keto reductase from Polaromonas sp.	0
NC_015663.1\|WP_015704828.1\|3148162_3148879_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	8.89255e-64
NC_015663.1\|WP_015704837.1\|3166339_3167281_+\|beta-aspartyl-peptidase	gnl\|CDD\|182319	PRK10226, PRK10226, isoaspartyl peptidase; Provisional.	0

>NC_015663.1|WP_015367567.1|3151045_3152638_+|ABC-F-family-ATPase
MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHGELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIADLQAFVSRFSANASKSRQATSRARQIDKIKLDEVKASSRQNPFIRFEQDKKLFRNALEVEALAKGFDNGPLFKGVNLLLEVGEKLAVLGTNGVGKSTMLKTLVGELEADNGTVKWSENARIGYYAQDHAEDFENDLTVFDWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILVMDEPTNHLDMESIESLNMALEMYQGTLIFVSHDREFVSSLATRVLEITPERVIDFSGNYEDYLRSKGIE
>NC_015663.1|WP_015704829.1|3150083_3150866_-|tyrosine-protein-phosphatase
MTTRTSHPAFISLQGGINFRDLGGQRAADGRRVRSGKLLRSGSLHNMTPEDLNHLSAIPLSRVLDYRDPTEVNRSPDRLNSEAFYLNAPANPLSSSVNAKVTEFNAATLNTMDGEQFMLQLYRQLPFNNAAYRQLTQWLMEPFDGALLQHCAVGKDRTGVGCALTLFALGCDSNTVMEEYLLTQGMLAQVEGFLLDTFGEGLNEHGRKNLAAIMTVQESYLATALSSIEQRYGHVDRWLEQEYRLTPQAREALQSRLLED
>NC_015663.1|WP_015367569.1|3148970_3149885_-|L,D-transpeptidase
MKLSTLLAAAFAIVGFCNTASAVTYPLPTDGSRLIGQNQVITIPDDNKQPLEYFAAKYQMGLSNMLEANPGVDTYLPKGGTVLNIPQQLILPDTVHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAEGNPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYVEVHNPLSTTEAQFKGGEIVPISLTQAVQSVTSQPDVDQSVMDQAIQNRSGMPVRLN
>NC_015663.1|WP_015704828.1|3148162_3148879_+|GntR-family-transcriptional-regulator
MTAKYLNIAREIKKRIISQQYPASAPLPDQFALAAEFNTSRMTIQQAMRQLIVEGLIYTRKGQGTFVRKNFLQLSQWELPGSDYFGATKTWEHLGEVQSEVVRFELRFPSEKEQSSLLIDADAPVYDFVRLRLLNGEPISLDLTVMPVALVPGLNKSHLQSSVFRYVQETLGLKLMGSYRVVRAIKPDELDKLHLNCEPTDPVLEVEQVIYLEDGTPLEYAHCHYRYDHGGVILVNNG
>NC_015663.1|WP_015704827.1|3146725_3148102_+|glycoside-hydrolase-family-1-protein
MKDKLPANFLWGNSVSSMQTEGAWNEGGKGMSVYDIREPSEFASDWKVATDSYHRFREDFDLMQDLGMNCYRFQIAWSRVCPQGDGEFNEEGIAFYHQFIDELIARGIEPMICLYHFDMPLSLAERYNGFTDRRVMDAFIRYGQKMIDCYGDKVKYWLTFNEQNLYHSPEAFLITGYLRGDKTLRELYQIQHHVMMAHVHLTDYLHQAKPQCLMGGMLAHALVYPATCKPRDILCAQQLDEFLNQNLLRAYAGEGYSPEVMHFVAREGFDDIYRPEDIALMARVKVDYLAFSYYASRTLNSDAIPPGTAVNNYMLFGNQDNPYLKATEWNWQIDPLGFRTIITRYYNDWRLPVFPIENGIGVIESWDGENQVADDYRIAYHRDHINAMKAAMFEDGAQVIGYLGWGLIDILSSQGDMRKRYGVVYVNRENHDLKDLKRVPKKSYAWLKRVIHSNGEEM
>NC_015663.1|WP_015704826.1|3145529_3146570_+|aldo/keto-reductase
MRYQKLGNTGLFVSELCLGTMTFGGEEGMWGKIGQLRQAEAEQLVGSALDAGINFIDTANVYSEGRSEEITGQALKNLKIPRENVVVATKVFGETGTAGVNSRGSSRYHIMGSVKESLRRLQLDHIDLYQLHGFDPATPIEETLSALDTLVQQGHVRYIGVSNWAAWQIAKALGIAERLGLSRFASLQAYYTIAGRELERELVPMMQSEGLGLMVWSPLAGGLLSGKYRRDGQAEAGGRRLEFDFPPVNKDRAFDCIDVMQVIAEAKGVSVAQIALAWLLHQPAVTSVIIGAKRAEQLQDNIAATAIRLSEDELRQLDAVSALPREYPGWMLERQGEYRRKQLDAQ
>NC_015663.1|WP_015704825.1|3144309_3145422_+|anion-transporter
MNLPLVQSLARDRFLHLLLLIAVILSLFVPFAPKRWGQAIDWHTIITLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQLAIFMVLAAALLSTFLTNDVALFIVVPLTLTLKKWCAIPVNRLIIFEALAVNAGSLLTPIGNPQNILLWGRSGLSFLAFIGQMLPLAAAMMITLLVLCWFCFPAARLNYQSSDKAPEWRPRLVWSCLAFYLIFLAALEMKQELWGLSIIAVGFLLLARAVIINVDWSLLLVFMAMFIDVHLLTQLPVLQQWLNDVGQLSHGGLWLTAIGLSQFISNVPSTILLLNYVPPTMLLAWAVNVGGFGLLPGSLANLIALRMAGDRRIWWRFHLYSIPLLIWAALTGYAMLALWR
>NC_015663.1|WP_015367574.1|3143845_3144313_+|manganese-binding-transcriptional-regulator-MntR
MNRRAGKPITKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLINEVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQIPWRGIFLTPEGEKLAHESRERHQIVENFLLAIGVSPEIARRDAEGMEHHVSEETLAQFKLFTQRLHAE
>NC_015663.1|WP_015367575.1|3143533_3143659_-|manganase-accumulation-protein-MntS
MNEFKRCLNVFSHSPFKVRLMLIGMLCDMINGKPQQDKPNH
>NC_015663.1|WP_015704824.1|3141687_3143265_-|phosphoethanolamine-transferase
MNVTLKETLAARRLALNPWTGFYFLQSLLINLALGYEFSLLYTVAFTCVLHLLWRTFPRVQKGVVGLYSLLAAMYYPFGQAYGAPNFNTLLALHATNVEESTEILTIFPWYNYLLAVFIFALGVIAVRRKPQPPARLGKVEYLGLLFSIGIFFLQPVQNLAWGGVFKVIDSGYPAVRFVKDVIVNNNEVLDEQARMAQLANMKDSWHVLAVKPKYHLYVVVIGESARRDALGAFGGHWDNTPFASSVNGYLFKNYVAASGSTQKSLGLTLNRVVYGKPQYQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVQFLKNGDFEANKNTQDEQLLKLTEQVLSVERSQPQLIVLHIMGSHPQACDRTKGKYTTFVQSKETSCYLYSVTQTDALLAKLYGQLQNSGSSFSLTYFSDHGLAFKERGKAVQYLAHDDKYQQNFQVPFMVLSSDDKAHKMIKARRSANDFLSFFSQWTGISAQEITPRYRFISEQKAGPVYITNFQLQKVDYNHLGSDEFTVN
>NC_015663.1|WP_015704830.1|3153260_3155624_-|glycoside-hydrolase-family-31-protein
MKTLKHWSLHQQLEHHVELTVDGQHTLCLYVLEENLFRVLLKRQGQLALDRTWSIAPQQDVPWEGRARDDLSGFSLPAWQMSEADDTLTIATRQLRVTVHQPLWLEWSYRDEAGEWQTLANDRPTSAYLANAHGDGVAHYLSRRKDERFYGLGEKAGDLQRNGKRYEMRNLDAMGYNAVSTDPLYKHIPFTITQRSDISYGLFYDNLSSCWLDLGNEIDNYHTAYRRWQAEAGDIDYYLFTGKQVLDVTKAFVRLTGKTLFGPKWSLGYSGSTMHYTDAPDAQNQLMNFIRLCEQHAIPCDSFQLSSGYTSINGKRYVFNWNYDKVPQPKVMSQSFHDAGLKLAANIKPCLLQDHPRYGEVAERGLFIRDSQTDAPERSSFWDDEGSHLDFTNPHTVTWWQEGVTTQLLEMGIDSTWNDNNEYEVWDGEARCYGFGREIAIKHIRPVMPLLMMRASLEAQQRFAPQKRPYLISRSGCAGMQRYVQTWSGDNRTNWDTLRYNTRMGLGMSLSGLFNVGHDVGGFSGDKPEPELFVRWVQNGVMHPRFTIHSWNDDQTVNEPWMYPEITPAIRSAIELRYRLLPYLYTLLWQAHADDEPMLRPTFLDHQHDTQTFAECDDFMLGRDLLVASVVEPGARQRQLWLPDNQDGWYDFYSHQWFAGGQWVTLDAPLEKLPLLVRAGAGLPLSERINHVDAQKDDRRELQLFPLKGTGSTRGLLFEDDGESWGYKEGDALWLEWEMTCSANSINLKLDACGNYRPAWKALKLSLPAGEKRQLLVNGVEGTEWRL
>NC_015663.1|WP_015704831.1|3155639_3156941_-|MFS-transporter
MSQGLNNDMAVSKTRRVVKNLRWWVLVLFLLGVTVNYITRNSLGIIAPELKATLGITTEQYSWIVGAFQLAYTIFQPLCGWLIDVIGLKLGFMVCATLWAVACIAHAGAGSWLHLAILRFFMGGAEAAATPANAKTIGEWFPKSERPIAAGWAGVGFSIGAMLAPPIIYFAHASFGWQGAFMFTGVLALLWVVLWWAFYQSPEKHPNLSQSELEYIKQDNEAPPVKQPFFTALKTVSKNKRFYGIAIPAFMAEPAWAVLSFWVPLYLAKEHGMDLKQIAMFAWLPFLAADLGSVVSGYLTRLYVRWFGCTRVNSVIASSVTGAFLMLSLALVAITRDPYITIILISIGGFGHQIISCMLSALVVESFDKGQMATVNGMRGSAAWIASFLFSLLIGVTADKIGFNPLFIAMGFFDLIGAVFLVAFIAERRAKRA
>NC_015663.1|WP_015367564.1|3157237_3158311_+|LacI-family-DNA-binding-transcriptional-regulator
MDKKLRVAEIAARTGLSASTVSRVLAGKANTSEKARQAVLACAHELGVMQGLAAGRLLLNNLLIFAPQRAFDERSDIFYYRVIQSINNALAPHEVRLRYCALEENDSDANLFLARMNETDTQAAVLLGIDDRHIHALAADLGKPCVLINCRDEGMRLPSIAPDHRLIGQCAARYLFDMGHQAVMNVMCLRRYTMELRLVGIKEAWRARNLRFTGSRDLISVANFSARETEEQVGAWLDALQGRPMPTAFLVGGDFMAAGTVSALQKRGLRVPQDVSVMSIDGFNLAAIQDVPLTAIHVPRDELGSEAVHLLQQRLLRPEAPHGSLLLHGALVVRDSVRRIRPGKSHTAVEQQGLYDD
>NC_015663.1|WP_015704832.1|3158307_3159573_-|DUF1479-domain-containing-protein
MAALPTHETLPADHKAAIRQMKQALRAQIGDVQAVFDKLSARISERLDEINALKAAGQEVWPTIPFSDIAQGKVSDAQREAIKRRGCAVIKGHYPREQALAWDNAMLEYLDLNHFDDVYKGPGDSFFGSLEASRPEIYPIYWSPSQMQARQSDEMAAVQSFLNRLWRFEQDGKRWFDPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFANVFNGNIDAYDPWDAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMIPGQGLLHVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGKVLPISEQWHPLLIKALSSIPALNAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAQKVKIALEKGASPGDFPREDYECDWQARFTVADLNDHGKRALGMKI
>NC_015663.1|WP_015367562.1|3159712_3160528_-|HAD-family-hydrolase
MTVKVIVTDMDGTFLNDAKQYDRPRFLAQFAQLKQQGIEFVVASGNQYYQLISFFPEIREQISFVAENGALVYEHGKQVFHGELTRHESQVVIGELLKDPQLNFVACGLQSAYVSDKAPDAFVELMSKHYHRLQRVSDYHRIDDTLFKFSLNLPDSDIPQLIDKLHVSLDGIMKPVTSGFGFVDLIIPGLHKANGISRLLKRWNLSPQQCVAIGDSGNDAEMLKLVKYAFAMANAADSIKAIAGFTTDDNNHDGALKVIQAVLDKTSPFND
>NC_015663.1|WP_015704833.1|3160678_3163111_-|formate-C-acetyltransferase/glycerol-dehydratase-family-glycyl-radical-enzyme
MTTLKLDTLSARIQAHKMALVHIVKPPVCTERAQHYTAAYQQHLDKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGAGFSVSEANKRVLHEVCPWWRGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNYPLLLEKGLDGMRAKVAERRSRINLTVLEDLHGEQFLKAIDIVLAAVSEHCKRFATLARDMAAQEPRELRRDELLAIAENCEIIAHQPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVELQQSLDREQAIELLHCCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNLVDGQPQDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCTGMSFINFARVMLATLEGGRDATSGQVFLAQQHALSKGNFANFDQVLEDWDTQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFDQGVIGQQELAKALAEDFAGLTHEQLRQRLINGAPKYGNDDDSVDILLARAYQTYIDELKQYHNPRYGRGPIGGNYYAGTSSISANVPFGAQTMATPDGRKAHAPLAEGASPASGTDHLGPTAVISSVGKLPTGAILGGVLLNQKLNPATLENESDKQKLMVLLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDTQDDIIARTEHTL
>NC_015663.1|WP_015704834.1|3163114_3164014_-|glycyl-radical-enzyme-activating-protein
MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARSEDLLYDARLCLDGCELCQQAAPEVITRNLDGLIIHRQNVNDSHIAALRHCCPTTALTVCGEEKSVTEIMATVLRDKPFYDRSGGGITLSGGEPFMNPALAQALFEASHQAGIHTAVETCLHVPWKYIEPSLPFVDLFLADLKHVDEAVFQQWTDGSARRVLDNLQRLAQAGKKIIIRVPLIQGFNASEADITAITDFAADRLQVSEIHFLPYHTLGMNKYQLLSQPYTAPDKPLAAPELLAFAQQYAQSKGLTATLRG
>NC_015663.1|WP_015704835.1|3164169_3164925_-|molybdopterin-synthase-adenylyltransferase-MoeB
MAVELSDEEMLRYNRQIVLRGFDFDGQERLKAARVLVVGLGGLGCAAAQYLAAAGVGQLTLLDFDTVSLSNLQRQTLHSDATIGQPKVDSARDALARINPHVRLVTIDAMLDDAALATQIADHHLVLDCTDNVAVRNQLNAGCFQHKTPLISGAAIRMEGQISVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLVGTIGSLQAMEAIKLLTGYGTPARGKIVMYDAMTCQFREMKLMRHPQCEVCGSR
>NC_015663.1|WP_015704836.1|3164924_3166160_-|molybdopterin-molybdotransferase-MoeA
MDFTAGLMPLDTALTQMLDRISPLQATETLPLLQAFSRVTAHDVVSPLDVPGFDNSAMDGYAVRLADLTDGAALPVAGKAFAGQPFHDAWPAGTCIRIMTGAPVPEGCDAVVMQEETEQTDAGVRFIAPVKAGQNIRRRGEDIANGAVVFPAGTRLTVAELPVLASLGIADAEVVRKVRVAVFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIPDDPAKLRDAFIAADQQADVVISSGGVSVGEADYTKTILEELGEIGFWKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNRGQTQPMRLRVRAASRLKKSPGRLDFQRGVLQRNPEGELVVSTTGHQGSHIFSSFSLGNCFIVLERERGNVEAGEWVEVEPFNHLFGGL
>NC_015663.1|WP_015704837.1|3166339_3167281_+|beta-aspartyl-peptidase
MGKAVIAIHGGAGAISRAQMTQAREREYVAALSAIVDSGQKMLAAGASALDAVTEAVRLLEECPLFNAGIGSVFTHDQTHELDACVMDGYSLQAGAVAGVKHLRNPVLAARLVLEESPHVLLIGEGAEKFAASRGMALVENELFSTTERLLQLQQAKEGGEIILDHHAAPLDERHKMGTVGAVALDLAGNLAAATSTGGMTNKLPGRVGDSPVPGAGCYANNASVAVSCTGTGEVFMRTLAAYDISALMEYGNLSLFEACERVVQEKLPALGGSGGLIAIDREGNVVLPFNSEGMYRAWCYAGDTPTIGIYRE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015663_2	2.1\|1381903\|28\|NC_015663\|CRISPRCasFinder	1381903-1381930	28	LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	133968-133995	0	1.0
NC_015663_4	4.1\|3152678\|26\|NC_015663\|CRISPRCasFinder	3152678-3152703	26	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	324018-324043	0	1.0
NC_015663_4	4.1\|3152678\|26\|NC_015663\|CRISPRCasFinder	3152678-3152703	26	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447528-447553	2	0.923
NC_015663_4	4.1\|3152678\|26\|NC_015663\|CRISPRCasFinder	3152678-3152703	26	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	323588-323613	5	0.808
NC_015663_4	4.1\|3152678\|26\|NC_015663\|CRISPRCasFinder	3152678-3152703	26	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	447689-447714	6	0.769

1. spacer 2.1|1381903|28|NC_015663|CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 0, identity: 1.0

cctacggtctgatagctcgagcaagccc	CRISPR spacer
cctacggtctgatagctcgagcaagccc	Protospacer
****************************

2. spacer 4.1|3152678|26|NC_015663|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 0, identity: 1.0

ggctacccgcggtgccgtttttttgt	CRISPR spacer
ggctacccgcggtgccgtttttttgt	Protospacer
**************************

3. spacer 4.1|3152678|26|NC_015663|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 2, identity: 0.923

ggctacccgcggtgccgtttttttgt	CRISPR spacer
cgctactcgcggtgccgtttttttgt	Protospacer
 *****.*******************

4. spacer 4.1|3152678|26|NC_015663|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.808

ggctacccgcggtgccgtttttttgt	CRISPR spacer
atctacccgcggtgccgttttttgtc	Protospacer
. *********************  .

5. spacer 4.1|3152678|26|NC_015663|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 6, identity: 0.769

ggctacccgcggtgccgtttttttgt	CRISPR spacer
cactactcgcggtgccgttttttgtc	Protospacer
 .****.****************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2607257 : 2614864

Erwinia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052766688.1\|2607257_2607590_-	DUF1493 family protein	A0A218M4K1	Erwinia_phage	2.4e-09	40.0
WP_015704506.1\|2607861_2608488_+	DNA-binding protein	NA	NA	NA	NA
WP_015704508.1\|2608800_2609127_-	DUF1493 family protein	NA	NA	NA	NA
WP_015704509.1\|2609120_2609585_-	membrane protein	A0A218M4J4	Erwinia_phage	4.9e-08	33.3
WP_015704510.1\|2610524_2611778_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.5e-91	45.6
WP_015368077.1\|2611788_2612892_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	9.7e-63	40.7
WP_015368078.1\|2613181_2614234_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	5.1e-114	59.0
WP_026612390.1\|2614297_2614864_-	C40 family peptidase	S5MM68	Bacillus_phage	2.2e-10	38.9

DBSCAN-SWA_2

4507026 : 4549853

Escherichia_phage(20.51%)

tail,integrase,holin,terminase

attL 4497578:4497592|attR 4554624:4554638

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4497578:4497592	attL	NA	NA	NA	NA
WP_164926755.1\|4507026_4510062_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	66.6
WP_015705683.1\|4510058_4510439_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	7.2e-58	78.6
WP_015705684.1\|4510448_4510931_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.2e-62	74.4
WP_015705685.1\|4510917_4511391_-	membrane protein	A0A286S298	Klebsiella_phage	1.5e-57	66.4
WP_015705686.1\|4511390_4514339_-\|tail	phage tail length tape measure family protein	A0A2H4J107	uncultured_Caudovirales_phage	8.2e-101	36.5
WP_015705687.1\|4514458_4514791_-	lipoprotein	M1PRT9	Cellulophaga_phage	1.7e-31	67.6
WP_123273243.1\|4514857_4515055_-	hypothetical protein	NA	NA	NA	NA
WP_015705689.1\|4515192_4515675_-	hypothetical protein	NA	NA	NA	NA
WP_015705690.1\|4515729_4516902_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	2.5e-24	27.2
WP_015705691.1\|4516925_4517318_-	hypothetical protein	NA	NA	NA	NA
WP_015705692.1\|4517314_4517866_-	hypothetical protein	G8C7Q1	Escherichia_phage	5.0e-28	39.8
WP_015705693.1\|4517867_4518251_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	8.6e-19	42.9
WP_015705694.1\|4518252_4518663_-	hypothetical protein	A0A0H5AUF0	Pseudomonas_phage	6.6e-09	39.7
WP_015705695.1\|4518666_4518879_-	hypothetical protein	G8C7P8	Escherichia_phage	4.0e-10	55.2
WP_015705696.1\|4518917_4520054_-	hypothetical protein	G8C7P7	Escherichia_phage	1.3e-158	75.7
WP_015705697.1\|4520141_4520906_-	hypothetical protein	G8C7P6	Escherichia_phage	3.4e-75	59.1
WP_015705698.1\|4521012_4522125_-	hypothetical protein	I6PD76	Cronobacter_phage	6.4e-107	53.0
WP_015705699.1\|4522108_4523533_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	3.4e-193	71.7
WP_015705700.1\|4523537_4524842_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	8.3e-146	59.8
WP_015705701.1\|4524819_4525812_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.1e-28	34.5
WP_015705702.1\|4525880_4526126_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	5.7e-32	90.1
WP_015705703.1\|4526248_4526509_-	hypothetical protein	NA	NA	NA	NA
WP_015705705.1\|4526866_4527142_-	hypothetical protein	K7PGW4	Enterobacterial_phage	6.6e-05	84.0
WP_015705706.1\|4527149_4527779_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	8.1e-99	84.2
WP_015705707.1\|4527778_4528060_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	7.7e-33	74.2
WP_032421481.1\|4528046_4528442_-\|holin	phage holin family protein	G8C7V8	Escherichia_phage	5.5e-45	72.3
WP_015705710.1\|4529947_4530769_-	antitermination protein	K7PKS8	Enterobacteria_phage	2.9e-112	73.3
WP_015705711.1\|4530765_4530906_-	YlcG family protein	NA	NA	NA	NA
WP_015705712.1\|4530902_4531268_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	6.4e-48	79.5
WP_015705713.1\|4531260_4531710_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	1.2e-35	50.0
WP_015705714.1\|4531971_4532583_-	NADAR family protein	A0A1X7BZM3	Faustovirus	1.5e-09	31.8
WP_015705715.1\|4532572_4533604_-	hypothetical protein	NA	NA	NA	NA
WP_015705717.1\|4534956_4535658_-	replication protein P	A0A0M3ULE2	Salmonella_phage	1.7e-100	79.1
WP_015705718.1\|4535654_4536587_-	replication protein	A0A077KB11	Edwardsiella_phage	9.7e-56	79.5
WP_015705719.1\|4536772_4537315_-	toxin YdaT domain-containing protein	M9NZI6	Enterobacteria_phage	7.8e-82	86.7
WP_015705720.1\|4537409_4537640_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	4.5e-23	68.9
WP_015705721.1\|4537744_4538440_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	9.0e-83	67.0
WP_015705723.1\|4538818_4539838_+	ParA family protein	H2BD62	Pseudomonas_phage	1.6e-51	35.8
WP_015705725.1\|4540685_4540877_+	DUF1482 family protein	NA	NA	NA	NA
WP_015705726.1\|4540885_4541044_+	hypothetical protein	K7P7H7	Enterobacteria_phage	3.8e-13	59.6
WP_015705727.1\|4541183_4544174_+	PD-(D/E)XK nuclease-like domain-containing protein	H6WRX1	Salmonella_phage	2.8e-298	61.5
WP_015705728.1\|4544186_4545296_+	recombinase RecT	H6WRX0	Salmonella_phage	1.4e-181	85.4
WP_047044982.1\|4545335_4545575_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	5.2e-22	67.5
WP_164926756.1\|4545795_4547013_-\|integrase	tyrosine-type recombinase/integrase	K7PGY1	Enterobacteria_phage	7.3e-120	52.1
WP_015366244.1\|4547159_4548050_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_015366243.1\|4548049_4549042_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	1.6e-08	26.1
WP_015366242.1\|4549043_4549853_+	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	6.1e-14	27.0
4554624:4554638	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4749559 : 4776514

Cronobacter_phage(48.39%)

holin,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164926760.1\|4749559_4750810_-	hypothetical protein	A0A2H4YH15	Raoultella_phage	6.3e-10	29.6
WP_015705857.1\|4750896_4753380_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	9.1e-202	45.6
WP_015705858.1\|4753366_4753762_-	C40 family peptidase	F1C5F2	Cronobacter_phage	1.8e-35	52.4
WP_015705859.1\|4753758_4754229_-	hypothetical protein	F1C5F1	Cronobacter_phage	4.0e-26	37.9
WP_032708471.1\|4754228_4754705_-	hypothetical protein	F1C5F0	Cronobacter_phage	7.9e-46	58.9
WP_015705861.1\|4754746_4755280_-	hypothetical protein	NA	NA	NA	NA
WP_015705862.1\|4755279_4757628_-	tape measure protein	A0A1B1W284	Salmonella_phage	4.5e-126	47.6
WP_015705863.1\|4757687_4758092_-	hypothetical protein	A0A286S1N7	Klebsiella_phage	5.9e-18	40.8
WP_015705864.1\|4758264_4759041_-	ORF6N domain-containing protein	H6WRU9	Salmonella_phage	1.4e-68	58.1
WP_150377911.1\|4759111_4759819_-	hypothetical protein	H6WRU8	Salmonella_phage	3.1e-38	40.8
WP_015705866.1\|4759805_4759973_-	Arc family DNA-binding protein	G9L6D7	Escherichia_phage	6.6e-16	76.5
WP_015705867.1\|4760095_4760536_+	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	1.6e-29	60.2
WP_015705868.1\|4760655_4761351_-	hypothetical protein	F1C5E8	Cronobacter_phage	9.1e-67	56.3
WP_015705869.1\|4761402_4762155_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	1.4e-44	42.2
WP_015705870.1\|4762223_4762613_-	hypothetical protein	G0ZNE4	Cronobacter_phage	8.4e-38	55.5
WP_015705871.1\|4762609_4763050_-	hypothetical protein	A0A1V0E5P5	Salmonella_phage	5.2e-36	54.1
WP_015705872.1\|4763052_4763400_-	hypothetical protein	G0ZNE2	Cronobacter_phage	3.5e-35	62.6
WP_015705874.1\|4763572_4763953_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.1e-29	56.1
WP_015705875.1\|4763955_4764357_-	hypothetical protein	NA	NA	NA	NA
WP_015705876.1\|4764366_4765443_-	hypothetical protein	F1C5E1	Cronobacter_phage	2.8e-160	77.4
WP_015705877.1\|4765454_4765895_-	hypothetical protein	F1C5E0	Cronobacter_phage	2.0e-43	64.4
WP_015705878.1\|4765898_4767092_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	8.2e-92	48.6
WP_015705879.1\|4767144_4767417_-	hypothetical protein	NA	NA	NA	NA
WP_015705880.1\|4767442_4768450_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.3e-113	68.0
WP_032709986.1\|4768385_4769834_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.3e-155	60.8
WP_015705882.1\|4769862_4771338_-\|terminase	phage terminase large subunit	A0A1W6JNY3	Morganella_phage	8.8e-253	83.9
WP_015705883.1\|4771337_4771940_-	hypothetical protein	G8C7P2	Escherichia_phage	4.9e-77	81.5
WP_015705884.1\|4772021_4772279_-	hypothetical protein	NA	NA	NA	NA
WP_015705885.1\|4772364_4772610_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.1e-30	87.7
WP_015705888.1\|4773056_4773434_-	lysozyme	M9NYX9	Enterobacteria_phage	3.1e-13	56.2
WP_015705889.1\|4773421_4773925_-	lysozyme	M9P0E5	Enterobacteria_phage	1.7e-86	92.7
WP_015705890.1\|4773902_4774127_-\|holin	class II holin family protein	M9NZI9	Enterobacteria_phage	5.7e-31	89.2
WP_015705892.1\|4774546_4774834_+	hypothetical protein	NA	NA	NA	NA
WP_015705893.1\|4774907_4775597_-	antitermination protein	I6PDF8	Cronobacter_phage	2.5e-61	56.3
WP_015705896.1\|4775706_4776072_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	7.4e-52	83.1
WP_015705897.1\|4776064_4776514_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	2.6e-35	50.7

DBSCAN-SWA_4

4779816 : 4793082

Escherichia_phage(27.78%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164926761.1\|4779816_4780953_-\|tail	tail fiber domain-containing protein	A0A1Z1LXX7	Serratia_phage	5.7e-18	29.0
WP_015705901.1\|4781157_4781400_-	hypothetical protein	NA	NA	NA	NA
WP_015705902.1\|4781392_4782514_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	2.4e-146	73.7
WP_015705903.1\|4782510_4782804_-	winged helix-turn-helix transcriptional regulator	M1FPD5	Enterobacteria_phage	7.5e-23	59.1
WP_015705904.1\|4782800_4783502_-	replication protein P	A0A0M3ULE2	Salmonella_phage	1.0e-102	80.0
WP_015705905.1\|4783498_4784431_-	replication protein	A0A077KB11	Edwardsiella_phage	4.8e-55	77.4
WP_015705906.1\|4784615_4785149_-	hypothetical protein	M9NZI6	Enterobacteria_phage	5.1e-78	83.9
WP_015705907.1\|4785165_4785399_-	antirepressor	A0A0P0ZDD7	Stx2-converting_phage	1.3e-17	61.0
WP_015705908.1\|4785440_4786193_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	1.3e-71	62.6
WP_015705909.1\|4786754_4786961_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	2.5e-25	76.5
WP_015705910.1\|4786965_4787280_-	hypothetical protein	NA	NA	NA	NA
WP_015705911.1\|4787414_4787699_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	3.1e-42	85.1
WP_015705912.1\|4787717_4788563_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.4e-69	60.3
WP_015705913.1\|4788559_4789240_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.0e-123	91.6
WP_015705914.1\|4789236_4789665_+	hypothetical protein	M9NYX4	Enterobacteria_phage	4.9e-63	81.0
WP_015705915.1\|4789661_4790318_+	DNA methyltransferase	G8C7S6	Escherichia_phage	5.7e-111	86.1
WP_015705916.1\|4790314_4790533_+	hypothetical protein	NA	NA	NA	NA
WP_015705917.1\|4790529_4790877_+	hypothetical protein	NA	NA	NA	NA
WP_015705918.1\|4790968_4791184_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	9.7e-20	66.7
WP_015705919.1\|4791185_4791416_+	hypothetical protein	G8C7S3	Escherichia_phage	5.5e-29	81.6
WP_015705920.1\|4791521_4791770_+	excisionase family protein	S4TND0	Salmonella_phage	1.8e-17	53.1
WP_015705921.1\|4791801_4793082_+	DUF3596 domain-containing protein	A0A0P0ZGT7	Escherichia_phage	4.4e-144	59.2

DBSCAN-SWA_5

4976697 : 4986018

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015706036.1\|4976697_4977567_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	7.5e-111	67.0
WP_015706037.1\|4977581_4978646_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	54.9
WP_015706039.1\|4979539_4980544_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	3.4e-30	28.6
WP_141108162.1\|4980881_4981001_+	small membrane protein	NA	NA	NA	NA
WP_015706040.1\|4981240_4982407_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	2.4e-112	53.7
WP_015706041.1\|4982581_4983136_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.3e-52	58.8
WP_015706042.1\|4983147_4984038_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.0e-27	33.1
WP_015706043.1\|4984069_4984939_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-110	67.0
WP_015706044.1\|4984953_4986018_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.4e-103	54.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015663

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection