CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015637	Vibrio anguillarum 775 chromosome II, complete sequence	0 crisprs	DEDDh,csa3	0	0	2	0
NC_015633	Vibrio anguillarum 775 chromosome I, complete sequence	1 crisprs	DEDDh,cas3,csx1,DinG,csa3	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11985 : 23185

Vibrio_phage(55.56%)

transposase,integrase

attL 12516:12531|attR 26352:26367

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011154643.1\|11985_12906_-\|transposase	IS5-like element ISVa2 family transposase	A0A1V0E8E1	Vibrio_phage	1.7e-177	100.0
12516:12531	attL	NA	NA	NA	NA
WP_020977843.1\|13004_13298_+	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_019280976.1\|13570_13960_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_019280977.1\|13963_14053_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_088718041.1\|14080_15231_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.0e-51	40.8
WP_159049404.1\|15264_15498_-	hypothetical protein	A0A0F6YPA7	Vibrio_phage	1.2e-12	49.4
WP_038148555.1\|15538_16072_-	hypothetical protein	R9TE46	Vibrio_phage	1.9e-16	45.7
WP_013867777.1\|16074_16308_-	hypothetical protein	O56843	Vibrio_virus	1.1e-11	53.1
WP_029189826.1\|16310_16877_-	3'-5' exonuclease	W6ASW5	Vibrio_phage	1.7e-50	55.5
WP_013867780.1\|17669_17858_-	hypothetical protein	NA	NA	NA	NA
WP_013867781.1\|18005_18512_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013867782.1\|18633_19935_+	hypothetical protein	J7I3Z6	Enterobacteria_phage	1.0e-79	40.6
WP_019281036.1\|20022_20301_+	G5P family DNA-binding protein	Q38210	Enterobacteria_phage	4.1e-10	41.2
WP_013867784.1\|20316_20964_+	hypothetical protein	NA	NA	NA	NA
WP_013867785.1\|20960_21245_+	hypothetical protein	NA	NA	NA	NA
WP_013867786.1\|21432_21744_-	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_013867787.1\|21751_22123_-	DUF3319 domain-containing protein	NA	NA	NA	NA
WP_013867788.1\|22225_23185_+\|integrase	tyrosine-type recombinase/integrase	A0A2I7R1N2	Vibrio_phage	2.5e-14	23.9
26352:26367	attR	NA	NA	NA	NA

DBSCAN-SWA_2

554447 : 619488

Bacillus_virus(25.0%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013856937.1\|554447_555695_-\|transposase	IS91-like element ISVa3 family transposase	NA	NA	NA	NA
WP_013868248.1\|556745_557636_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013868249.1\|557784_558144_+	DUF413 domain-containing protein	NA	NA	NA	NA
WP_017044957.1\|558410_558662_-	DUF3081 domain-containing protein	NA	NA	NA	NA
WP_013868251.1\|558973_559774_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_080569446.1\|559901_560303_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_017044959.1\|560206_561154_-	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	6.4e-15	39.6
WP_013868253.1\|561793_563743_+	PTS mannitol transporter subunit IICBA	NA	NA	NA	NA
WP_029189695.1\|563859_565008_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_010319258.1\|565069_565600_+	MltR family transcriptional regulator	NA	NA	NA	NA
WP_026027760.1\|565705_566635_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013868256.1\|566631_568080_-	sodium:proton antiporter NhaD	NA	NA	NA	NA
WP_029189696.1\|568249_569554_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_013868258.1\|570036_570480_-	DoxX family protein	NA	NA	NA	NA
WP_019280795.1\|571658_572315_+	hypothetical protein	NA	NA	NA	NA
WP_013868260.1\|572370_573606_+	proprotein convertase P-domain-containing protein	NA	NA	NA	NA
WP_013868261.1\|573652_574687_-	DUF2955 domain-containing protein	NA	NA	NA	NA
WP_013868262.1\|574699_575755_-	HlyD family secretion protein	NA	NA	NA	NA
WP_013868263.1\|575761_576244_-	transcriptional regulator SlyA	NA	NA	NA	NA
WP_013868264.1\|576357_577386_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_013868265.1\|577419_578184_-	EAL domain-containing protein	NA	NA	NA	NA
WP_013868266.1\|578276_579830_-	cryptochrome/photolyase family protein	A0A1V0SE91	Indivirus	8.6e-49	27.7
WP_013868267.1\|579985_580360_-	rhodanese-like domain-containing protein	H8ZJP5	Ostreococcus_tauri_virus	4.1e-05	36.9
WP_013868268.1\|580410_581508_-	ABC transporter permease	NA	NA	NA	NA
WP_013868269.1\|581504_582431_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.5e-20	29.9
WP_026028878.1\|582430_583387_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_013868271.1\|583484_584144_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_013868272.1\|584148_585198_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.1e-34	38.3
WP_013868273.1\|585194_585998_-	ABC transporter permease	NA	NA	NA	NA
WP_029189699.1\|585984_586884_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_010318641.1\|586883_587687_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_013868275.1\|587696_588758_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_013868276.1\|588970_589723_+	UTRA domain-containing protein	NA	NA	NA	NA
WP_013868277.1\|589768_590995_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.4e-46	33.2
WP_013868278.1\|591441_592677_+	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_013868279.1\|592806_593463_-	HAD family phosphatase	NA	NA	NA	NA
WP_049785469.1\|593679_595416_+	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_013868281.1\|595667_596549_-	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_013868282.1\|596548_598102_-	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_013868283.1\|598247_598862_-	glutathione S-transferase	NA	NA	NA	NA
WP_013868284.1\|598875_599907_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_038148298.1\|599991_600588_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013868286.1\|600760_603058_-	glycoside hydrolase	NA	NA	NA	NA
WP_013868287.1\|603133_603961_-	DUF2861 family protein	NA	NA	NA	NA
WP_013868288.1\|603953_604607_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-24	33.0
WP_013868289.1\|604603_606049_-	DUF3404 domain-containing protein	NA	NA	NA	NA
WP_013868290.1\|606142_607840_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_013868292.1\|608413_609502_+	sel1 repeat family protein	NA	NA	NA	NA
WP_011154643.1\|609975_610896_-\|transposase	IS5-like element ISVa2 family transposase	A0A1V0E8E1	Vibrio_phage	1.7e-177	100.0
WP_040122735.1\|610989_611463_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_026027753.1\|611512_612988_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_013868295.1\|612990_613428_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_013868296.1\|613434_615204_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_026028436.1\|615167_616190_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_013868297.1\|616194_617667_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_013868298.1\|617669_618149_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_013868299.1\|618153_619488_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015633

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CRISPR-Cas detection and classification

Crispr_ID: NC_015633_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015633_1

1044152-1044305

Orphan

Consensus_repeat	Method
CGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCATTTCCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015633_1

>merge|NC_015633|1|1044152-1044305|CRISPRCasFinder
CGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCATTTCCGCAAATTTTTAGTTATCGAGATGGTGCGGAAGGAGAGACTTGAACTCTCACACCTTACGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTTCCGCA

>NC_015633|1|1|1044152-1044305|CRISPRCasFinder
CGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCATTTCCGCA	AATTTTTAGTTATCGAGATGGTGCGGAAGGAGAGACTTGAACTCTCACACCTTA
CGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTTCGCCACTTCCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015633.1\|WP_013857965.1\|1045354_1046446_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NC_015633.1\|WP_026029038.1\|1042046_1043180_+\|flagellin	unknown	unknown	gnl\|CDD\|236344
NC_015633.1\|WP_013856267.1\|1052215_1053097_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NC_015633.1\|WP_013856266.1\|1051122_1052211_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NC_015633.1\|WP_013856262.1\|1046456_1047047_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_015633.1\|WP_013856259.1\|1038811_1040005_+\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|236345
NC_015633.1\|WP_013856268.1\|1053081_1053465_+\|SirB2-family-protein	unknown	unknown	gnl\|CDD\|377264
NC_015633.1\|WP_013856264.1\|1049038_1049671_-\|lipoprotein-localization-protein-LolB	unknown	unknown	gnl\|CDD\|234578
NC_015633.1\|WP_029189766.1\|1054315_1055167_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NC_015633.1\|WP_013856265.1\|1049832_1051092_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NC_015633.1\|WP_010319379.1\|1033120_1033909_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NC_015633.1\|WP_013856269.1\|1053483_1054293_+\|SirB1-family-protein	unknown	unknown	gnl\|CDD\|225464
NC_015633.1\|WP_013856255.1\|1033932_1034712_+\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NC_015633.1\|WP_013856252.1\|1030095_1030803_+\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|235847
NC_015633.1\|WP_026027903.1\|1032349_1033099_+\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NC_015633.1\|WP_013856258.1\|1036926_1038801_+\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|181572
NC_015633.1\|WP_013856260.1\|1040400_1041540_+\|flagellin	unknown	unknown	gnl\|CDD\|236344
NC_015633.1\|WP_013856257.1\|1035860_1036784_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
NC_015633.1\|WP_010320509.1\|1047196_1048141_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_015633.1\|WP_013856256.1\|1034759_1035851_+\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399

Protein	Function_ID	Function_description	E-value
NC_015633.1\|WP_013857965.1\|1045354_1046446_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NC_015633.1\|WP_026029038.1\|1042046_1043180_+\|flagellin	gnl\|CDD\|236344	PRK08869, PRK08869, polar flagellin E.	0
NC_015633.1\|WP_013856267.1\|1052215_1053097_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	2.44886e-131
NC_015633.1\|WP_013856266.1\|1051122_1052211_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NC_015633.1\|WP_013856262.1\|1046456_1047047_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.89532e-107
NC_015633.1\|WP_013856259.1\|1038811_1040005_+\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|236345	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed.	1.62025e-168
NC_015633.1\|WP_013856268.1\|1053081_1053465_+\|SirB2-family-protein	gnl\|CDD\|377264	pfam04247, SirB, Invasion gene expression up-regulator, SirB. SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown.	6.62695e-36
NC_015633.1\|WP_013856264.1\|1049038_1049671_-\|lipoprotein-localization-protein-LolB	gnl\|CDD\|234578	PRK00022, lolB, lipoprotein localization protein LolB.	7.38757e-63
NC_015633.1\|WP_029189766.1\|1054315_1055167_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NC_015633.1\|WP_013856265.1\|1049832_1051092_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NC_015633.1\|WP_010319379.1\|1033120_1033909_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	1.68024e-166
NC_015633.1\|WP_013856269.1\|1053483_1054293_+\|SirB1-family-protein	gnl\|CDD\|225464	COG2912, COG2912, Uncharacterized conserved protein [Function unknown].	2.68217e-101
NC_015633.1\|WP_013856255.1\|1033932_1034712_+\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	4.40634e-87
NC_015633.1\|WP_013856252.1\|1030095_1030803_+\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	7.14442e-95
NC_015633.1\|WP_026027903.1\|1032349_1033099_+\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	5.97303e-142
NC_015633.1\|WP_013856258.1\|1036926_1038801_+\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|181572	PRK08871, flgK, flagellar hook-associated protein FlgK; Validated.	0
NC_015633.1\|WP_013856260.1\|1040400_1041540_+\|flagellin	gnl\|CDD\|236344	PRK08869, PRK08869, polar flagellin E.	0
NC_015633.1\|WP_013856257.1\|1035860_1036784_+\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	6.91446e-141
NC_015633.1\|WP_010320509.1\|1047196_1048141_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NC_015633.1\|WP_013856256.1\|1034759_1035851_+\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0

>NC_015633.1|WP_026029038.1|1042046_1043180_+|flagellin
MAVNVNTNVSAMTAQRYLNSASNAQQLSMERLSSGFKINNAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSSNGSNSKADRVAIQEEITALNDELNRIAETTSFGGNKLLNGTFETKSFQIGADNGEAVMLSLNNMRSDNAMMGGKSYQAANGQDKDWTVKAGANDLTITLTDKRTGEQTINLSAKDGDDIEELATYINGQTDMLKASVDDEGKLQIFTDSNRIDGVATFGGSLAGELSFQAAKDVTVDTIDVTSVGGSQESVAIVDAALQFVDSHRAQLGAFQNRFNHAINNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAALGLLG
>NC_015633.1|WP_013856260.1|1040400_1041540_+|flagellin
MTITVNTNVSAMTAQRYLNKATGELNTSMERLSSGNKINSAKDDAAGLQISNRLTAQSRGLDVAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGTNSASERQALDEESTALQDELNRIAETTSFGGRKLLNGSFGEASFQIGASSGEAIIMGLTSIRADDFRMGGQSFLAEQGKDKDWGVPAGARDLKFEFTTQAGELVTLDVLAKDGDDIEELATYINGQTDKLKASVDQDGKLQIFAAEPNLQGDLAISGGLATELGLNGGPGVKTTVQDIDITSVGGSQNAVGVLDAAMRYVDSQRAELGAKQNRLSHSINNLANIQENVEASNSRIKDTDFAKETTQMTKAQILQQAGTSILAQAKQLPNSAMSLLQ
>NC_015633.1|WP_013856259.1|1038811_1040005_+|flagellar-hook-associated-protein-FlgL
MLTRISSFHNYQSVQNDMRRQESKIHHNQAQLASGKKLLSASDSPLATHYIQKVGQQEEQLRQYLDAIVLVRNRLEHQEVIIANAESSTDEAKRTVMEMINGSFSPEDREAKARELQEMFNNLIELANTQDESGNYMFAGTKPKNQPFFRDNASNVTYSGDDYQRKMRISNSLEIPFNNPGNKVFMEIDNPFGNYEPNYQLNEGSELLLERATNLDSNDTSRYTVTFVDMANGKYGYQLEKDGSVVQADEFDPQKGIRYQDLTVHVKGQISKGDVLSLEPRSTFTLFDSYKDAIELSQGSVSDASTTAKLHQITEEFHAAFIHLNKVRTDVGARLSTLDIQQEQHEDFKISLAKSKSNFEDLDYAEAVIEFNENSRALQASQLAFGKTKDLTLFNYI
>NC_015633.1|WP_013856258.1|1036926_1038801_+|flagellar-hook-associated-protein-FlgK
MASDLLNLGTQSVLTAQRQLSTTGHNISNVNTEGYSRQSVIQGTNTPRQYGGETYGMGVHVEKVRRSWDQFAVNELNLSTTSFSFKRDDEENLDMLSKLLSSVASKKIPENLNEWFDAIKTLADSPNDVGARKVVLEKADLITQNMNDFHENIRRQSDATNKGLDVAVERINQLALELRDLQRLMMRTPGPHNDLMDQHEKLVAELSEYTKVTVTPRKNAEGFNIHIGSGHTLVSGTEASQMKMVDGYPDVSQRRLAMIEGKGIKTITTEDIGGKLSALFTMRDKHIPYLMDELGRMATSFSYEVNKLQSQGLDLRGNVGRALFTDVNSEVNARSRAIIAGNSKADMAVYIEDTSALKSGEYSLQYNGSNYTVLKPTGERVNVPVVGSSLFLDGMRVEIRNAPQAGERILLRPTRNGAAIMKMATNDPTAIAAQSYEASTTFAQGQAKFNILSAGGLREFEVVISPTGDQFAVTDTKGNVLLEPQAYPPSNSITVLGTTFELTAGALPNDKFTANLVLSEGDNGNLRKMQQIQTEKKLNDGETTVLGVYHDLNTDFGLQLATASRLSDVARLEKESAQERIASISGVNLDEEAANMMKFQQAYMASSRIMQVANDTFNTILQLR
>NC_015633.1|WP_013856257.1|1035860_1036784_+|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MINNPNDIGFIHDIASLDKLRQQAKTGDKEGESAALKAAAKQFEAIFTSMLFKSMRDANADFKSEMFNSQNEDFYRQMLDEQMSSELSASGSLGLADMIVAQLSQANGTSKNDPAITDPTQDGFQEAMRRIERSNNRRLSTQETIEPSKVESSRFDSPQAFVASMKPYAEKAARALGVDSSLLLAQAALETGWGQKVVQNARGSSNNLFNIKADKSWLGEKVATQTLEYHDNTPVMEKAAFRSYGNYQDSFNDYVRFLNDNPRYTVALNHNGSDESFIRGLHAAGYATDPYYAEKVLRVKSQIEAME
>NC_015633.1|WP_013856256.1|1034759_1035851_+|flagellar-basal-body-P-ring-protein-FlgI
MKKFTLLVLSLLLIATHAQAARIKDVSQVAGVRSNQLVGYGLVTGLPGTGESTPFTDQSFNAMLQNFGIQLPPGTKPKTKNVAAVIVTAELPAFSKQGQSVDVTVSSIGSAKSLRGGTLMQTFLKGLDGQIYAVAQGNLVVSGFSATGADGSKIVGNNPTVGLISGGAMVEREVPTPFSRGDFITFNLLESDFTTAQRMADAVNNFLGPEMATAVDATSVRIRAPRDVGQRVAFLSAIENVEFDPADGSAKIIVNSRTGTIVVGQHVRLKPAAVTHGGMTVAIKENLNVSQPNALAGGQTAVVPNSQIEVSEAQGKMFKFEPGLTLDDLVRAVNEVGAAPSDLMAILQALKQAGAIEGQLIII
>NC_015633.1|WP_013856255.1|1033932_1034712_+|flagellar-basal-body-L-ring-protein-FlgH
MKRLLSLVFVTALSGCSLMPPPVDTPEVVQGTTVVDAVEGDKSAEEGSGLLDSMRKRSDPVAGDPAWAPIHPKQKPEHYAAETGSLFNLAQMNSLYDDSKPRGIGDIITVNLDESTKAAKSADADLSKSNDASMDPLAVGGKDLTVGDYNFSYALKNDNKFNGSSAANQSNSISGSITVEVIEVLANGNLVIRGEKWLTLNTGDEYIRLSGTIRPDDIDFDNTIASTRISNARIQYSGTGTNQDMQEPGFLARFFNVSL
>NC_015633.1|WP_010319379.1|1033120_1033909_+|flagellar-basal-body-rod-protein-FlgG
MQPALWVSKTGLDAQQTNIATISNNLANASTIGFKKGRAVFEDLFYQNINQPGGQSSQNTKLPSGLMLGAGSKVVATQKVHTHGNVQTTTNSLDMMIEGDGFFQILMPDGNIAYSRNGQFTLNDEGAIVTSGAGYNLEPEIVIPPDAISITVGNDGEVSVRLRGQQNNQVVGQITTVDFINPGGLEPIGQNLYLPTGASGDPQEGVPGLDGLGDVRQSMLETSNVNVTEELVNMIEAQRVYEMNSKVISAVDKMMSFVNQQL
>NC_015633.1|WP_026027903.1|1032349_1033099_+|flagellar-basal-body-rod-protein-FlgF
MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTERPGHNFAQGSVITTGRDLDITIQGDGWISMMDKTGKEGLTRSGNLSIDQNGMLINGSGHLVLDGTGAPITLPIPLSKVEIGNDGTISVRPQGAPADAMEVVGRIKLVRPNNQSLYKDTNGLFRAKDPNAAFEADASVKLLKGALEGSNVNAVGEMTSLIELQRQFEMQVKMMSTAEEMDKSSDSLLRMS
>NC_015633.1|WP_013856252.1|1030095_1030803_+|flagellar-hook-assembly-protein-FlgD
MAGINNIGQSGLSYIDQLKSLQDQKKTEETTGKQDLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGIKKEGAGMAAMVKLPQSLENLFVRIENEAGQLVRTFDVGAKSAGDNRVEWDGNDQNGNPLPGGKYQVKASGLLDGESKEFAVSTYANVNSVLLGKGDGNVLLNLAGFTSPVKLAEVLEVGKA
>NC_015633.1|WP_013857965.1|1045354_1046446_-|redox-regulated-ATPase-YchF
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPVPDLRLDALAEIVNPQRILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENENIVHVAGKVSPIEDIEVINLELALADLDSCERAIQRQAKRAKGGDKDAKFEITVLEKLLPVLTEGGMARTVELSKEELAAVDYLNFLTLKPTMYIANVSEDGFENNPYLDAVREFAEKENNSVVAVCAAIEAELSELEEEDRAEFLADLGIEEPGLNRVIRTGYELLTLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFERGFIRAEVVGYDDFIQYRGENGAKEAGKWRLEGKEYIVKDGDVIHFRFNV
>NC_015633.1|WP_013856262.1|1046456_1047047_-|aminoacyl-tRNA-hydrolase
MSQPIKLLVGLANPGPEYAKTRHNAGAWVVEELARVHNVTLKNEAKFFGFTGRIVVNGEDLRLLIPTTFMNLSGKAVAAIAKFYQIKPEEIMVAHDELDLPPGVAKFKMGGGHGGHNGLKDTISKLGNNKEFYRLRIGIGHPGHKDKVAGYVLGKAPAKEQECLDAAVDESVRCFDILLKDGLTKAQNRLHTFKAE
>NC_015633.1|WP_010320509.1|1047196_1048141_-|ribose-phosphate-pyrophosphokinase
MPDMKLFAGNATPELAQRIAERLYISLGDATVSRFSDGEVAVQINENVRGSDVFIIQSTCAPTNDNLMELVVMIDAMRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSNVGVDRVLTIDLHAEQIQGFFDVPVDNIFGTPVLLEDMKARGLEDPVVVSPDLGGVVRARATAKALGDIDIAIVDKRRPRANVSEVMNLIGDVDGRDCVIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVFSGNAAKNIKNSVLDQVIVTDSITLSKEMAATGKVTQLTLSSMLAEAIRRISNEESISAMFN
>NC_015633.1|WP_013856264.1|1049038_1049671_-|lipoprotein-localization-protein-LolB
MTRANRLILTLLTLLTLFGCTNLPSTRVESVGWQQHQQQLQTIRGYQASGKLGYISPQQRQSLNFHWQKNADHSQLRLSTFLGQTVLNLSISPQGAQVKTYDDQIIDAQNADALVYELTGLSIPIEQLQDWLLGLPTEADGFQLNQNNLLASLDKQLGLSRWHLEYLNYQAYPFVSTSASSTSVPLPAKLKLTQDQVSLNLVISKWTLTP
>NC_015633.1|WP_013856265.1|1049832_1051092_+|glutamyl-tRNA-reductase
MSLLAIGINHNTASVELREKVAFGPDKLSEALRQLASSSSVQGSVIVSTCNRTEIYCDVKSSSKSKLIDWLSQFHHVNPEDLKPSLYVHEEQAAIRHLMRVACGLDSLVLGEPQILGQVKQAYADAREHNAADSAIEKLFQKAFSVAKRVRTETEIGGSAVSVAYAACTLAKQIFESLSDSTVMLVGAGETIELVAKHLASHRCKRMIVANRTRERAMGLAQQFDAEVIALNEIPDYLAHADIVISSTASPLPIIGKGMVESAIKVRRHQPMLLIDIAVPRDIESQVGDLNDAYLYTVDDLQSIVDSNMEQRKVEAIQAEAIVSEESAAFMSWMRSLQAVDSIREYRQSANEIRQELLSKSLQALAAGGDPEKVLLELSNKLTNRLIHTPTRALQSAAELGEPAKLAVIRQSLGLDDPR
>NC_015633.1|WP_013856266.1|1051122_1052211_+|peptide-chain-release-factor-1
MKASILVKLESLVERYEEVQRLLGEPTVISDQNKFRTLSKEYSQLEEVTKCFQAYQQAQEDLVAAEEMTKEEDAEMREMAQEEIKIAKATIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSRYAEKMSWRIEIMSASYAEHGGYKEVIAKVSGDGAYGVLKFESGGHRVQRVPATESQGRVHTSACTVAIMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIAQAEEAKRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLQSLIDPIIQEYQADQLAALADQH
>NC_015633.1|WP_013856267.1|1052215_1053097_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTLSRIDDALKAAIAQLQEGGSDSPSVDAAVLLCHVLDKPRSYLLTWPEKTLSETQSRQFCSLITRRVTGEPVAYLVGEREFWSLPLKVSPSTLIPRPDTERLVEIALEKSQQTQGDILDLGTGTGAIALALASELPERHVVGIDLRPEAQALALENAQRLTITNVTFLQGSWFEPLKLGTKFALIVSNPPYIEENDLHLTQGDVRFEPLSALVAKDKGLADIKHIAENARHYLQQQGWLLFEHGYDQGAAVRALFESLGYHHVVTEKDYAGNDRVTLGQYSHSEERASCTKD
>NC_015633.1|WP_013856268.1|1053081_1053465_+|SirB2-family-protein
MYEGLKHFHLLTIAISALLLSVRYALMMMDSKWLQHPFLKRFPHINDSLLLLSGIALIVMSGFIPFTPAAPWLTEKLTCVMAYIALGFFALKLGRNKLLRTFAFLGALGWLAMAGKIAIVKTAMFLG
>NC_015633.1|WP_013856269.1|1053483_1054293_+|SirB1-family-protein
MFEWFDEDFDAMELVEGALILNKAINPETEDEWARQELARLLTQAKHELANEQDEKQRFEALLRLFYQQWGFRGDREAYFDSRNAFIDKVLQHRKGIPVSLGALLLYFARKLGFPLQGITFPTQFLLQLHWCDESPIYINPFTGEIVSLHILQAWLVGHKGVLSKLKSSHLEVTDNPTVIGRWLALLKSALLREERYTLALRCTDLALTFVPDDPYEIRDRGFIYQQLDCHQIALSDYQYFIDHCPNDPAAELLKNQVNALSFEAITLH
>NC_015633.1|WP_029189766.1|1054315_1055167_+|3-deoxy-8-phosphooctulonate-synthase
MEQKIVHVGDIPVANDKPFTLFAGMNVLESRDLAMQICEHYVKVTDKLGIPYVFKASFDKANRSSVHSYRGPGLEEGMKIFQELKETFGVKIITDVHTEAQAQPVSEVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFMSPGQVGNIVEKFAECGNDKVILCERGACHGYDNLVVDMLGFGVMKKVSNGSPIIFDVTHSLQMRDPSGAASGGRREQTVDLAKSGLAAGIAGLFIEAHPNPDKARCDGPSALPLDKLEPFLAQMKALDDLIKSFAHIDIR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

56856 : 126229

Leptospira_phage(22.22%)

tRNA,transposase,protease,integrase

attL 45226:45241|attR 127628:127643

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
45226:45241	attL	NA	NA	NA	NA
WP_013855445.1\|56856_57291_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_013855446.1\|57262_58177_-	virulence factor BrkB family protein	NA	NA	NA	NA
WP_010319743.1\|58310_60134_-	translational GTPase TypA	A0A1B0RXH7	Streptococcus_phage	6.1e-22	42.1
WP_013855448.1\|60634_62044_+	glutamate--ammonia ligase	NA	NA	NA	NA
WP_013855449.1\|62192_62774_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_026027507.1\|62908_63955_+	nitrogen regulation protein NR(II)	Q8QKV7	Ectocarpus_siliculosus_virus	2.4e-10	27.0
WP_013855452.1\|63994_65398_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_013855453.1\|65479_68053_+	EAL domain-containing protein	NA	NA	NA	NA
WP_013855454.1\|68144_69149_+	adenosine deaminase	NA	NA	NA	NA
WP_017044858.1\|75170_75626_+	hypothetical protein	NA	NA	NA	NA
WP_026028593.1\|75588_76392_-	glutamate racemase	NA	NA	NA	NA
WP_013855457.1\|76422_77154_-	ATPase	NA	NA	NA	NA
WP_013855458.1\|77157_78987_-	TonB-dependent receptor	NA	NA	NA	NA
WP_000137390.1\|79688_80312_+	sce7726 family protein	NA	NA	NA	NA
WP_013855459.1\|80291_81365_-	beta family protein	NA	NA	NA	NA
WP_013855460.1\|81361_81904_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_040122933.1\|81907_82567_-	hypothetical protein	NA	NA	NA	NA
WP_001035412.1\|82718_82928_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_040122932.1\|83034_83574_+	hypothetical protein	NA	NA	NA	NA
WP_171817129.1\|83617_84883_+	HipA domain-containing protein	NA	NA	NA	NA
WP_040122931.1\|84943_85153_+	hypothetical protein	NA	NA	NA	NA
WP_013855465.1\|85142_85340_+	hypothetical protein	NA	NA	NA	NA
WP_040122930.1\|85353_85701_+	transcriptional regulator	NA	NA	NA	NA
WP_049785457.1\|85886_88349_+	S-type pyocin domain-containing protein	NA	NA	NA	NA
WP_020977684.1\|88323_88794_+	hypothetical protein	NA	NA	NA	NA
WP_171817128.1\|88802_89216_+	hypothetical protein	NA	NA	NA	NA
WP_013855468.1\|89217_89655_+	DUF2251 domain-containing protein	NA	NA	NA	NA
WP_040122928.1\|89738_90320_-	recombinase family protein	E5FFF9	Burkholderia_phage	4.6e-40	48.9
WP_013855470.1\|90502_91039_-	hypothetical protein	NA	NA	NA	NA
WP_013855471.1\|91042_93232_-\|integrase	integrase	NA	NA	NA	NA
WP_013855472.1\|93243_95703_-	hypothetical protein	NA	NA	NA	NA
WP_041769208.1\|95707_97117_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_029189859.1\|97469_98579_+\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_013855475.1\|98618_98810_-	hypothetical protein	NA	NA	NA	NA
WP_013855477.1\|99263_102365_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	3.4e-307	52.4
WP_013855478.1\|102524_102902_-	YijD family membrane protein	NA	NA	NA	NA
WP_017048583.1\|102901_103543_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA
WP_013855482.1\|105334_106678_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_013855483.1\|106740_107559_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_013855485.1\|108598_111022_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_013855486.1\|111082_111937_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_013855487.1\|111933_112488_-	chorismate lyase	NA	NA	NA	NA
WP_013855488.1\|112724_113132_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_013855489.1\|113164_113998_-\|protease	rhomboid family intramembrane serine protease GlpG	NA	NA	NA	NA
WP_010316900.1\|114006_114327_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_013855491.1\|114722_115580_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	1.5e-42	38.7
WP_013855492.1\|115755_116724_-	cell division protein FtsX	NA	NA	NA	NA
WP_010316903.1\|116713_117388_-	cell division ATP-binding protein FtsE	A0A2H4PQG7	Staphylococcus_phage	3.9e-14	27.8
WP_013855493.1\|117450_118635_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_029189861.1\|118841_119441_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_013855495.1\|119437_119704_+	DUF1145 domain-containing protein	NA	NA	NA	NA
WP_013855497.1\|120275_121286_+	hypothetical protein	NA	NA	NA	NA
WP_011154643.1\|121430_122351_-\|transposase	IS5-like element ISVa2 family transposase	A0A1V0E8E1	Vibrio_phage	1.7e-177	100.0
WP_013855498.1\|122464_122770_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013855499.1\|122766_123909_+	hypothetical protein	NA	NA	NA	NA
WP_011154648.1\|123960_124278_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011154649.1\|124274_124628_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-14	48.6
WP_011154650.1\|124687_126229_+\|transposase	IS66-like element ISVa5 family transposase	S5VTP8	Leptospira_phage	1.9e-24	38.9
127628:127643	attR	NA	NA	NA	NA

DBSCAN-SWA_2

332428 : 401033

Leptospira_phage(28.57%)

transposase,integrase

attL 384186:384199|attR 401288:401301

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011154650.1\|332428_333970_-\|transposase	IS66-like element ISVa5 family transposase	S5VTP8	Leptospira_phage	1.9e-24	38.9
WP_011154649.1\|334029_334383_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-14	48.6
WP_011154648.1\|334379_334697_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_013855673.1\|335408_336485_+	nucleoid-associated protein	A0A291AUQ0	Sinorhizobium_phage	1.2e-12	23.0
WP_013855674.1\|336487_336826_+	hypothetical protein	NA	NA	NA	NA
WP_013855675.1\|336848_337703_+	hypothetical protein	NA	NA	NA	NA
WP_011154648.1\|338004_338322_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_011154649.1\|338318_338672_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-14	48.6
WP_011154650.1\|338731_340273_+\|transposase	IS66-like element ISVa5 family transposase	S5VTP8	Leptospira_phage	1.9e-24	38.9
WP_013855676.1\|340612_341086_-	hypothetical protein	NA	NA	NA	NA
WP_013855677.1\|341672_345278_+	DNA-binding protein	NA	NA	NA	NA
WP_013855678.1\|345557_346010_-	hypothetical protein	NA	NA	NA	NA
WP_011154643.1\|347225_348146_-\|transposase	IS5-like element ISVa2 family transposase	A0A1V0E8E1	Vibrio_phage	1.7e-177	100.0
WP_013855680.1\|348398_349157_-	hypothetical protein	NA	NA	NA	NA
WP_082223721.1\|349166_349844_-	hypothetical protein	NA	NA	NA	NA
WP_029189983.1\|350841_352044_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_029189984.1\|352132_353485_-	glutathione-disulfide reductase	NA	NA	NA	NA
WP_013855685.1\|353595_354435_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_013855686.1\|354640_356683_+	oligopeptidase A	A0A1V0SD92	Indivirus	2.1e-42	22.7
WP_013855687.1\|356839_359014_+	DNA helicase II	A7KV33	Bacillus_phage	7.9e-117	37.2
WP_013855689.1\|359797_360457_-	LysE family translocator	NA	NA	NA	NA
WP_026028188.1\|360530_361337_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013855691.1\|361457_362375_-	EamA family transporter RarD	NA	NA	NA	NA
WP_041768992.1\|362626_364465_+	ATP-dependent DNA helicase RecQ	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	1.2e-81	36.1
WP_013855693.1\|364457_364760_+	DUF3630 family protein	NA	NA	NA	NA
WP_013855694.1\|364850_365213_+	hypothetical protein	NA	NA	NA	NA
WP_013855695.1\|365218_366067_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_013855696.1\|366308_367211_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_013855697.1\|367240_368689_+	PTS N-acetylmuramic acid transporter subunit IIBC	NA	NA	NA	NA
WP_013855698.1\|368833_370666_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.1e-29	27.5
WP_013855699.1\|370809_372906_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_029190000.1\|373011_373797_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.7e-09	25.2
WP_013855701.1\|373787_374714_+	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013855702.1\|374710_376678_+	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA
WP_011154643.1\|377584_378505_-\|transposase	IS5-like element ISVa2 family transposase	A0A1V0E8E1	Vibrio_phage	1.7e-177	100.0
WP_013855704.1\|378600_381393_+	insulinase family protein	NA	NA	NA	NA
WP_013855705.1\|381730_384619_+	hypothetical protein	NA	NA	NA	NA
384186:384199	attL	NA	NA	NA	NA
WP_001147121.1\|384857_385082_-	hypothetical protein	NA	NA	NA	NA
WP_013855706.1\|385082_385367_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013855707.1\|385363_387058_-	DUF927 domain-containing protein	NA	NA	NA	NA
WP_013855708.1\|387327_388119_+	type IV toxin-antitoxin system AbiEi family antitoxin	NA	NA	NA	NA
WP_013855709.1\|388111_389050_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_013855710.1\|389088_391236_+	site-specific DNA-methyltransferase	A0A2R3ZYF2	Campylobacter_phage	1.2e-11	31.4
WP_013855711.1\|391238_393839_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_013855712.1\|393912_395001_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_000162945.1\|395006_395603_-	hypothetical protein	NA	NA	NA	NA
WP_013855713.1\|396202_396790_+	hypothetical protein	NA	NA	NA	NA
WP_013855714.1\|396786_397317_+	hypothetical protein	NA	NA	NA	NA
WP_013855715.1\|397446_398160_+	hypothetical protein	NA	NA	NA	NA
WP_041945940.1\|398450_398741_+	hypothetical protein	NA	NA	NA	NA
WP_013855717.1\|398906_399236_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013855718.1\|399347_399836_+	hypothetical protein	NA	NA	NA	NA
WP_013855719.1\|399827_401033_-\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	9.9e-69	36.1
401288:401301	attR	NA	NA	NA	NA

DBSCAN-SWA_3

426468 : 433391

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013855744.1\|426468_427410_-	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	4.3e-35	36.8
WP_013855745.1\|427674_428739_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	54.6
WP_013855746.1\|428762_429641_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.9e-110	67.9
WP_013855747.1\|429637_430525_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.9e-37	35.7
WP_013855748.1\|430527_431073_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.5e-53	57.5
WP_013855749.1\|431229_432036_+	ABC transporter permease	NA	NA	NA	NA
WP_019281204.1\|432050_433391_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-10	24.4

DBSCAN-SWA_4

961474 : 968098

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038148735.1\|961474_962614_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-62	42.0
WP_013856192.1\|962627_963878_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	7.3e-99	48.7
WP_010320136.1\|964009_964459_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_013856193.1\|964465_965563_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	8.7e-48	36.8
WP_013856194.1\|965564_966221_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.1e-35	38.5
WP_013856195.1\|966309_967419_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	9.7e-63	39.3
WP_041945923.1\|967627_968098_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.4e-31	47.3

DBSCAN-SWA_5

1397423 : 1406656

Vibrio_phage(50.0%)

transposase,integrase

attL 1392137:1392152|attR 1406162:1406177

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1392137:1392152	attL	NA	NA	NA	NA
WP_011154650.1\|1397423_1398965_-\|transposase	IS66-like element ISVa5 family transposase	S5VTP8	Leptospira_phage	1.9e-24	38.9
WP_011154649.1\|1399024_1399378_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-14	48.6
WP_011154648.1\|1399374_1399692_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_013856580.1\|1399795_1400377_-	UPF0149 family protein	NA	NA	NA	NA
WP_013856581.1\|1400526_1402962_+	response regulator	A0A1V0SGX0	Hokovirus	4.0e-53	33.6
WP_013856582.1\|1403199_1403649_+	L-alanine exporter AlaE	NA	NA	NA	NA
WP_013856583.1\|1404217_1405453_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.4e-147	63.2
WP_041945927.1\|1405524_1405776_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.7e-07	55.3
WP_013856584.1\|1405735_1406656_-\|transposase	IS5-like element ISVa2 family transposase	A0A1V0E8E1	Vibrio_phage	6.4e-177	99.7
1406162:1406177	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2487340 : 2494411

Megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013857494.1\|2487340_2487766_-	nucleoside-diphosphate kinase	K7YW26	Megavirus	2.7e-21	41.4
WP_026028095.1\|2487838_2489134_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.1e-33	34.5
WP_013857496.1\|2489318_2489513_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_010320405.1\|2489563_2489902_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_013857497.1\|2489913_2491767_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.2e-111	41.4
WP_026028094.1\|2491788_2492304_-	co-chaperone HscB	NA	NA	NA	NA
WP_010320408.1\|2492370_2492694_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.6e-26	53.3
WP_010320409.1\|2492756_2493140_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.8e-53	78.2
WP_013857499.1\|2493196_2494411_-	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	2.4e-30	31.4

DBSCAN-SWA_7

2759455 : 2766660

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026027976.1\|2759455_2760346_+	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	1.5e-58	41.1
WP_029189955.1\|2760588_2763177_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.3e-36	21.2
WP_013857714.1\|2763293_2764277_-	RNA polymerase sigma factor RpoS	A0A2I7SAT0	Vibrio_phage	1.1e-30	32.7
WP_041769244.1\|2764349_2765282_-	murein hydrolase activator NlpD	I3PV79	Clostridium_phage	5.9e-13	32.8
WP_013857716.1\|2765287_2765914_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.0e-38	53.9
WP_010320454.1\|2765913_2766660_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-68	54.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015637

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015633

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection