CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015681	Thermodesulfatator indicus DSM 15286, complete sequence	5 crisprs	cmr1gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,Cas9_archaeal,csx1,cas6,csa3,PD-DExK	1	5	1	0

1. NC_015681

CRISPR-Cas detection and classification

Crispr_ID: NC_015681_1

• CRISPR_ID: NC_015681_1
• CRISPR_location: 238340-242248
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 58 spacers
• Cas_protein_info: cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cmr3gr5

Consensus repeat of NC_015681_1

Consensus_repeat	Method
GTTCACAGCCTAACTAAAAGGAATGGAAAC	PILER-CR
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CRISPRCasFinder
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CRT

spacers of NC_015681_1

>1.1|238370|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CTAACTCTACTTTCTTTTTCCCCTGCTGTTTTGTAG
>1.2|238436|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTATTTTGTAACTTTTCTTGTATCTCATCCCAACCA
>1.3|238502|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AAAATCCTTGATAAATTCCTGCTGCTATTCTTCTTAG
>1.4|238569|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AACAATTAAAAAATTCTCCTGCTCTTTCCCCTCCAGC
>1.5|238636|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GAAGGTTATAGAGCTTTGATTTCTTTAGTTAAACAGG
>1.6|238703|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTAGATTTAAAAATTAAGGTAGCAGTTAAAGAAGGA
>1.7|238769|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TGGGCAACAAATATTTATAAAATCACGCCCCACATT
>1.8|238835|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ATAGAATACAGCTAAGAAGAATAGCAGCAGGAATTT
>1.9|238901|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GGGCTTTAAGAGAAGACTTTGGAAAAGTGGTTGGAG
>1.10|238967|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AAGTCTCAAATATTTAATGCAGTTAGCACAGTATTTG
>1.11|239034|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTCCCTTAGAGGGACAGGTTATGTGGTAATAAAATCCT
>1.12|239102|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CTAACAAAATCTCTCCACTTTCTCATAAAAACCTCC
>1.13|239168|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ATAGACATAAGTGCGTGGGGGACATACCCATTTGCGT
>1.14|239235|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GACTGATGGAACATACGGCCTCCATTCAAGCTCTCCC
>1.15|239302|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GGGGGTGTGGGTGAGGAAAATAGAAAAAAGAGTACTG
>1.16|239369|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CAAGAACTTATACTTTTTAGGAAAATGTTTCTTAGCA
>1.17|239436|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCATTATTGAGGCTGACACAGCACGATGCGAAAGCCC
>1.18|239503|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCTTCCTGCTTTTTGGTTTTTGGATATTTTTGGTTACC
>1.19|239571|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CGATTTCCGCGGCTCTAATACTCCATGGCGGAGCAT
>1.20|239637|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GGTAGCGTTCAAGGGCTGTTGCGTCAAAGCCTTGCTC
>1.21|239704|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GTGCGTAACGCCTGAACATTTACCCTGGCATCTGCACA
>1.22|239772|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTGATATTATTAGTGAAAATCCTTACTCATTGACTC
>1.23|239838|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ATATCCAATAGTTATTATTCCTATGACTTCATCTCAC
>1.24|239905|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ATGGCAAAATAACGGGCCGCCCTTTCTGCAGCCAGAGT
>1.25|239973|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTACCTAACCTCTATAAATTTTAGCTTGAACGAAGTA
>1.26|240040|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ATTAAACTAATTTGGTTAGCAAGAAAACACACCACA
>1.27|240106|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TAATCATATTCAGATAAGGCCTCTAACAAAGGAACTA
>1.28|240173|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTTGGTGGCCGTCATACCCTCCGACTATTTTCACTTT
>1.29|240240|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TAAAATGTTTTATCCCCTGCCTAATAGTTCCCTTGA
>1.30|240306|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AAGCTAAACTTCGGGACTTGTGAAATAGTCATATCGA
>1.31|240373|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTTCTTCTATGCTCCGCATTATTTATCCTCCAATAAA
>1.32|240440|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
>1.33|240507|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
>1.34|240574|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTTTGCCATCGGTCAGGTGCCGGTGGCCGTCCAGGTA
>1.35|240641|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TAAACTCTGCTTTGGTTAACCCTAGGCCCGCCTTTAC
>1.36|240708|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTACCAGACTTTTGGTTAATATTATTAAGCTCGTTCT
>1.37|240775|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AAAGATTGAGCATCAACAGCGTTAATAATAATGTTGT
>1.38|240842|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CTTTATTGGTAAAATTATCAATTGTAGAGGAATTGA
>1.39|240908|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GAAGGACAATGCAAATAATACTAACCGAGAAACCAAG
>1.40|240975|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CTAAACCTTCTGCACTTCTTTGAATTAAAGCCACTGG
>1.41|241042|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GATATGGTAATGGAGAAATGAAAACAACAGCGTATTT
>1.42|241109|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
>1.43|241176|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
>1.44|241243|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
>1.45|241310|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TAATCCCACCGGAGTGGTTCCGGTTCAGCAATGCATA
>1.46|241377|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GCGAAACGTCTGGCTTCAAGAGGGGACAACCTGATTCG
>1.47|241445|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCGGCACCCACGAGGCAGGAATCTGGCGAAGAGTCGG
>1.48|241512|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
>1.49|241579|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AAAAGCTTGAGGTAAAACTGGAAGAAGTCTTCCCTCAG
>1.50|241647|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AGTACTAACTAACTACTTTCTTAATACTTAACTAATA
>1.51|241714|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
>1.52|241782|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
>1.53|241850|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GGTAAAATTTCTTTGTTACGCATATTCACAATCCTC
>1.54|241916|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CTGGATCGGCCTATCGATGTAATTTTTGGTGCCTTAGT
>1.55|241984|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCGTCCATGAGGGCTGGCACGACCGAAACGCTTCGAG
>1.56|242051|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
>1.57|242117|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
>1.58|242183|36|NC_015681|CRT
TGGCCTTACGATAACGGAAGGCGGCTCTGAGAGAGG

CRISPR arrays and Neighbor proteins around NC_015681_1

CRISPR arrays

The CRISPR arrays of NC_015681_1

>merge|NC_015681|1|238340-242248|PILER-CR,CRISPRCasFinder,CRT
GTTCACAGCCTAACTAAAAGGAATGGAAACCTAACTCTACTTTCTTTTTCCCCTGCTGTTTTGTAGGTTCACAGCCTAACTAAAAGGAATGGAAACTTATTTTGTAACTTTTCTTGTATCTCATCCCAACCAGTTCACAGCCTAACTAAAAGGAATGGAAACAAAATCCTTGATAAATTCCTGCTGCTATTCTTCTTAGGTTCACAGCCTAACTAAAAGGAATGGAAACAACAATTAAAAAATTCTCCTGCTCTTTCCCCTCCAGCGTTCACAGCCTAACTAAAAGGAATGGAAACGAAGGTTATAGAGCTTTGATTTCTTTAGTTAAACAGGGTTCACAGCCTAACTAAAAGGAATGGAAACTTAGATTTAAAAATTAAGGTAGCAGTTAAAGAAGGAGTTCACAGCCTAACTAAAAGGAATGGAAACTGGGCAACAAATATTTATAAAATCACGCCCCACATTGTTCACAGCCTAACTAAAAGGAATGGAAACATAGAATACAGCTAAGAAGAATAGCAGCAGGAATTTGTTCACAGCCTAACTAAAAGGAATGGAAACGGGCTTTAAGAGAAGACTTTGGAAAAGTGGTTGGAGGTTCACAGCCTAACTAAAAGGAATGGAAACAAGTCTCAAATATTTAATGCAGTTAGCACAGTATTTGGTTCACAGCCTAACTAAAAGGAATGGAAACTTCCCTTAGAGGGACAGGTTATGTGGTAATAAAATCCTGTTCACAGCCTAACTAAAAGGAATGGAAACCTAACAAAATCTCTCCACTTTCTCATAAAAACCTCCGTTCACAGCCTAACTAAAAGGAATGGAAACATAGACATAAGTGCGTGGGGGACATACCCATTTGCGTGTTCACAGCCTAACTAAAAGGAATGGAAACGACTGATGGAACATACGGCCTCCATTCAAGCTCTCCCGTTCACAGCCTAACTAAAAGGAATGGAAACGGGGGTGTGGGTGAGGAAAATAGAAAAAAGAGTACTGGTTCACAGCCTAACTAAAAGGAATGGAAACCAAGAACTTATACTTTTTAGGAAAATGTTTCTTAGCAGTTCACAGCCTAACTAAAAGGAATGGAAACTCATTATTGAGGCTGACACAGCACGATGCGAAAGCCCGTTCACAGCCTAACTAAAAGGAATGGAAACTCTTCCTGCTTTTTGGTTTTTGGATATTTTTGGTTACCGTTCACAGCCTAACTAAAAGGAATGGAAACCGATTTCCGCGGCTCTAATACTCCATGGCGGAGCATGTTCACAGCCTAACTAAAAGGAATGGAAACGGTAGCGTTCAAGGGCTGTTGCGTCAAAGCCTTGCTCGTTCACAGCCTAACTAAAAGGAATGGAAACGTGCGTAACGCCTGAACATTTACCCTGGCATCTGCACAGTTCACAGCCTAACTAAAAGGAATGGAAACTTGATATTATTAGTGAAAATCCTTACTCATTGACTCGTTCACAGCCTAACTAAAAGGAATGGAAACATATCCAATAGTTATTATTCCTATGACTTCATCTCACGTTCACAGCCTAACTAAAAGGAATGGAAACATGGCAAAATAACGGGCCGCCCTTTCTGCAGCCAGAGTGTTCACAGCCTAACTAAAAGGAATGGAAACTTACCTAACCTCTATAAATTTTAGCTTGAACGAAGTAGTTCACAGCCTAACTAAAAGGAATGGAAACATTAAACTAATTTGGTTAGCAAGAAAACACACCACAGTTCACAGCCTAACTAAAAGGAATGGAAACTAATCATATTCAGATAAGGCCTCTAACAAAGGAACTAGTTCACAGCCTAACTAAAAGGAATGGAAACTTTGGTGGCCGTCATACCCTCCGACTATTTTCACTTTGTTCACAGCCTAACTAAAAGGAATGGAAACTAAAATGTTTTATCCCCTGCCTAATAGTTCCCTTGAGTTCACAGCCTAACTAAAAGGAATGGAAACAAGCTAAACTTCGGGACTTGTGAAATAGTCATATCGAGTTCACAGCCTAACTAAAAGGAATGGAAACTTTCTTCTATGCTCCGCATTATTTATCCTCCAATAAAGTTCACAGCCTAACTAAAAGGAATGGAAACTCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGCGTTCACAGCCTAACTAAAAGGAATGGAAACTCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGCGTTCACAGCCTAACTAAAAGGAATGGAAACTTTTGCCATCGGTCAGGTGCCGGTGGCCGTCCAGGTAGTTCACAGCCTAACTAAAAGGAATGGAAACTAAACTCTGCTTTGGTTAACCCTAGGCCCGCCTTTACGTTCACAGCCTAACTAAAAGGAATGGAAACTTACCAGACTTTTGGTTAATATTATTAAGCTCGTTCTGTTCACAGCCTAACTAAAAGGAATGGAAACAAAGATTGAGCATCAACAGCGTTAATAATAATGTTGTGTTCACAGCCTAACTAAAAGGAATGGAAACCTTTATTGGTAAAATTATCAATTGTAGAGGAATTGAGTTCACAGCCTAACTAAAAGGAATGGAAACGAAGGACAATGCAAATAATACTAACCGAGAAACCAAGGTTCACAGCCTAACTAAAAGGAATGGAAACCTAAACCTTCTGCACTTCTTTGAATTAAAGCCACTGGGTTCACAGCCTAACTAAAAGGAATGGAAACGATATGGTAATGGAGAAATGAAAACAACAGCGTATTTGTTCACAGCCTAACTAAAAGGAATGGAAACAGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGTGTTCACAGCCTAACTAAAAGGAATGGAAACTTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTTGTTCACAGCCTAACTAAAAGGAATGGAAACTTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTTGTTCACAGCCTAACTAAAAGGAATGGAAACTAATCCCACCGGAGTGGTTCCGGTTCAGCAATGCATAGTTCACAGCCTAACTAAAAGGAATGGAAACGCGAAACGTCTGGCTTCAAGAGGGGACAACCTGATTCGGTTCACAGCCTAACTAAAAGGAATGGAAACTCGGCACCCACGAGGCAGGAATCTGGCGAAGAGTCGGGTTCACAGCCTAACTAAAAGGAATGGAAACAGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGTGTTCACAGCCTAACTAAAAGGAATGGAAACAAAAGCTTGAGGTAAAACTGGAAGAAGTCTTCCCTCAGGTTCACAGCCTAACTAAAAGGAATGGAAACAGTACTAACTAACTACTTTCTTAATACTTAACTAATAGTTCACAGCCTAACTAAAAGGAATGGAAACACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACCGTTCACAGCCTAACTAAAAGGAATGGAAACACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACCGTTCACAGCCTAACTAAAAGGAATGGAAACGGTAAAATTTCTTTGTTACGCATATTCACAATCCTCGTTCACAGCCTAACTAAAAGGAATGGAAACCTGGATCGGCCTATCGATGTAATTTTTGGTGCCTTAGTGTTCACAGCCTAACTAAAAGGAATGGAAACTCGTCCATGAGGGCTGGCACGACCGAAACGCTTCGAGGTTCACAGCCTAACTAAAAGGAATGGAAACTTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGAGTTCACAGCCTAACTAAAAGGAATGGAAACTTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGAGTTCACAGCCTAACTAAAAGGAATGGAAACTGGCCTTACGATAACGGAAGGCGGCTCTGAGAGAGGGTTCACAGCCTAACTACTAAGGGGAGCACT

>NC_015681|1|1|238340-242182|PILER-CR
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTAACTCTACTTTCTTTTTCCCCTGCTGTTTTGTAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTATTTTGTAACTTTTCTTGTATCTCATCCCAACCA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAAATCCTTGATAAATTCCTGCTGCTATTCTTCTTAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AACAATTAAAAAATTCTCCTGCTCTTTCCCCTCCAGC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GAAGGTTATAGAGCTTTGATTTCTTTAGTTAAACAGG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTAGATTTAAAAATTAAGGTAGCAGTTAAAGAAGGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TGGGCAACAAATATTTATAAAATCACGCCCCACATT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATAGAATACAGCTAAGAAGAATAGCAGCAGGAATTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGGCTTTAAGAGAAGACTTTGGAAAAGTGGTTGGAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAGTCTCAAATATTTAATGCAGTTAGCACAGTATTTG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTCCCTTAGAGGGACAGGTTATGTGGTAATAAAATCCT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTAACAAAATCTCTCCACTTTCTCATAAAAACCTCC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATAGACATAAGTGCGTGGGGGACATACCCATTTGCGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GACTGATGGAACATACGGCCTCCATTCAAGCTCTCCC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGGGGTGTGGGTGAGGAAAATAGAAAAAAGAGTACTG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CAAGAACTTATACTTTTTAGGAAAATGTTTCTTAGCA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCATTATTGAGGCTGACACAGCACGATGCGAAAGCCC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCTTCCTGCTTTTTGGTTTTTGGATATTTTTGGTTACC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CGATTTCCGCGGCTCTAATACTCCATGGCGGAGCAT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGTAGCGTTCAAGGGCTGTTGCGTCAAAGCCTTGCTC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GTGCGTAACGCCTGAACATTTACCCTGGCATCTGCACA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTGATATTATTAGTGAAAATCCTTACTCATTGACTC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATATCCAATAGTTATTATTCCTATGACTTCATCTCAC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATGGCAAAATAACGGGCCGCCCTTTCTGCAGCCAGAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTACCTAACCTCTATAAATTTTAGCTTGAACGAAGTA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATTAAACTAATTTGGTTAGCAAGAAAACACACCACA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAATCATATTCAGATAAGGCCTCTAACAAAGGAACTA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTGGTGGCCGTCATACCCTCCGACTATTTTCACTTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAAAATGTTTTATCCCCTGCCTAATAGTTCCCTTGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAGCTAAACTTCGGGACTTGTGAAATAGTCATATCGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTCTTCTATGCTCCGCATTATTTATCCTCCAATAAA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTTGCCATCGGTCAGGTGCCGGTGGCCGTCCAGGTA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAAACTCTGCTTTGGTTAACCCTAGGCCCGCCTTTAC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTACCAGACTTTTGGTTAATATTATTAAGCTCGTTCT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAAGATTGAGCATCAACAGCGTTAATAATAATGTTGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTTTATTGGTAAAATTATCAATTGTAGAGGAATTGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GAAGGACAATGCAAATAATACTAACCGAGAAACCAAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTAAACCTTCTGCACTTCTTTGAATTAAAGCCACTGG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GATATGGTAATGGAGAAATGAAAACAACAGCGTATTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAATCCCACCGGAGTGGTTCCGGTTCAGCAATGCATA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GCGAAACGTCTGGCTTCAAGAGGGGACAACCTGATTCG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGGCACCCACGAGGCAGGAATCTGGCGAAGAGTCGG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAAAGCTTGAGGTAAAACTGGAAGAAGTCTTCCCTCAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AGTACTAACTAACTACTTTCTTAATACTTAACTAATA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGTAAAATTTCTTTGTTACGCATATTCACAATCCTC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTGGATCGGCCTATCGATGTAATTTTTGGTGCCTTAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGTCCATGAGGGCTGGCACGACCGAAACGCTTCGAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC

>NC_015681|1|1|238340-242182|CRISPRCasFinder
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTAACTCTACTTTCTTTTTCCCCTGCTGTTTTGTAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTATTTTGTAACTTTTCTTGTATCTCATCCCAACCA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAAATCCTTGATAAATTCCTGCTGCTATTCTTCTTAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AACAATTAAAAAATTCTCCTGCTCTTTCCCCTCCAGC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GAAGGTTATAGAGCTTTGATTTCTTTAGTTAAACAGG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTAGATTTAAAAATTAAGGTAGCAGTTAAAGAAGGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TGGGCAACAAATATTTATAAAATCACGCCCCACATT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATAGAATACAGCTAAGAAGAATAGCAGCAGGAATTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGGCTTTAAGAGAAGACTTTGGAAAAGTGGTTGGAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAGTCTCAAATATTTAATGCAGTTAGCACAGTATTTG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTCCCTTAGAGGGACAGGTTATGTGGTAATAAAATCCT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTAACAAAATCTCTCCACTTTCTCATAAAAACCTCC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATAGACATAAGTGCGTGGGGGACATACCCATTTGCGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GACTGATGGAACATACGGCCTCCATTCAAGCTCTCCC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGGGGTGTGGGTGAGGAAAATAGAAAAAAGAGTACTG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CAAGAACTTATACTTTTTAGGAAAATGTTTCTTAGCA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCATTATTGAGGCTGACACAGCACGATGCGAAAGCCC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCTTCCTGCTTTTTGGTTTTTGGATATTTTTGGTTACC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CGATTTCCGCGGCTCTAATACTCCATGGCGGAGCAT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGTAGCGTTCAAGGGCTGTTGCGTCAAAGCCTTGCTC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GTGCGTAACGCCTGAACATTTACCCTGGCATCTGCACA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTGATATTATTAGTGAAAATCCTTACTCATTGACTC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATATCCAATAGTTATTATTCCTATGACTTCATCTCAC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATGGCAAAATAACGGGCCGCCCTTTCTGCAGCCAGAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTACCTAACCTCTATAAATTTTAGCTTGAACGAAGTA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATTAAACTAATTTGGTTAGCAAGAAAACACACCACA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAATCATATTCAGATAAGGCCTCTAACAAAGGAACTA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTGGTGGCCGTCATACCCTCCGACTATTTTCACTTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAAAATGTTTTATCCCCTGCCTAATAGTTCCCTTGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAGCTAAACTTCGGGACTTGTGAAATAGTCATATCGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTCTTCTATGCTCCGCATTATTTATCCTCCAATAAA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTTGCCATCGGTCAGGTGCCGGTGGCCGTCCAGGTA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAAACTCTGCTTTGGTTAACCCTAGGCCCGCCTTTAC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTACCAGACTTTTGGTTAATATTATTAAGCTCGTTCT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAAGATTGAGCATCAACAGCGTTAATAATAATGTTGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTTTATTGGTAAAATTATCAATTGTAGAGGAATTGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GAAGGACAATGCAAATAATACTAACCGAGAAACCAAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTAAACCTTCTGCACTTCTTTGAATTAAAGCCACTGG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GATATGGTAATGGAGAAATGAAAACAACAGCGTATTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAATCCCACCGGAGTGGTTCCGGTTCAGCAATGCATA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GCGAAACGTCTGGCTTCAAGAGGGGACAACCTGATTCG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGGCACCCACGAGGCAGGAATCTGGCGAAGAGTCGG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAAAGCTTGAGGTAAAACTGGAAGAAGTCTTCCCTCAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AGTACTAACTAACTACTTTCTTAATACTTAACTAATA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGTAAAATTTCTTTGTTACGCATATTCACAATCCTC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTGGATCGGCCTATCGATGTAATTTTTGGTGCCTTAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGTCCATGAGGGCTGGCACGACCGAAACGCTTCGAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC

>NC_015681|1|1|238340-242248|CRT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTAACTCTACTTTCTTTTTCCCCTGCTGTTTTGTAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTATTTTGTAACTTTTCTTGTATCTCATCCCAACCA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAAATCCTTGATAAATTCCTGCTGCTATTCTTCTTAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AACAATTAAAAAATTCTCCTGCTCTTTCCCCTCCAGC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GAAGGTTATAGAGCTTTGATTTCTTTAGTTAAACAGG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTAGATTTAAAAATTAAGGTAGCAGTTAAAGAAGGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TGGGCAACAAATATTTATAAAATCACGCCCCACATT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATAGAATACAGCTAAGAAGAATAGCAGCAGGAATTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGGCTTTAAGAGAAGACTTTGGAAAAGTGGTTGGAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAGTCTCAAATATTTAATGCAGTTAGCACAGTATTTG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTCCCTTAGAGGGACAGGTTATGTGGTAATAAAATCCT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTAACAAAATCTCTCCACTTTCTCATAAAAACCTCC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATAGACATAAGTGCGTGGGGGACATACCCATTTGCGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GACTGATGGAACATACGGCCTCCATTCAAGCTCTCCC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGGGGTGTGGGTGAGGAAAATAGAAAAAAGAGTACTG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CAAGAACTTATACTTTTTAGGAAAATGTTTCTTAGCA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCATTATTGAGGCTGACACAGCACGATGCGAAAGCCC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCTTCCTGCTTTTTGGTTTTTGGATATTTTTGGTTACC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CGATTTCCGCGGCTCTAATACTCCATGGCGGAGCAT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGTAGCGTTCAAGGGCTGTTGCGTCAAAGCCTTGCTC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GTGCGTAACGCCTGAACATTTACCCTGGCATCTGCACA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTGATATTATTAGTGAAAATCCTTACTCATTGACTC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATATCCAATAGTTATTATTCCTATGACTTCATCTCAC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATGGCAAAATAACGGGCCGCCCTTTCTGCAGCCAGAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTACCTAACCTCTATAAATTTTAGCTTGAACGAAGTA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ATTAAACTAATTTGGTTAGCAAGAAAACACACCACA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAATCATATTCAGATAAGGCCTCTAACAAAGGAACTA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTGGTGGCCGTCATACCCTCCGACTATTTTCACTTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAAAATGTTTTATCCCCTGCCTAATAGTTCCCTTGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAGCTAAACTTCGGGACTTGTGAAATAGTCATATCGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTCTTCTATGCTCCGCATTATTTATCCTCCAATAAA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGCCACCAGCCCGGATAATACGGGCATTCTTCTAGC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTTGCCATCGGTCAGGTGCCGGTGGCCGTCCAGGTA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAAACTCTGCTTTGGTTAACCCTAGGCCCGCCTTTAC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTACCAGACTTTTGGTTAATATTATTAAGCTCGTTCT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAAGATTGAGCATCAACAGCGTTAATAATAATGTTGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTTTATTGGTAAAATTATCAATTGTAGAGGAATTGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GAAGGACAATGCAAATAATACTAACCGAGAAACCAAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTAAACCTTCTGCACTTCTTTGAATTAAAGCCACTGG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GATATGGTAATGGAGAAATGAAAACAACAGCGTATTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTTATTATTCATTTCCCCCTTTTTCTATGTATTCTT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TAATCCCACCGGAGTGGTTCCGGTTCAGCAATGCATA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GCGAAACGTCTGGCTTCAAGAGGGGACAACCTGATTCG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGGCACCCACGAGGCAGGAATCTGGCGAAGAGTCGG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AGCATTTTGGTGAGGAATTTGAGCGTTATATGGGAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AAAAGCTTGAGGTAAAACTGGAAGAAGTCTTCCCTCAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	AGTACTAACTAACTACTTTCTTAATACTTAACTAATA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	ACCTCATTTCCGAGAGCCTTAGCAATGGCACTTTTACC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	GGTAAAATTTCTTTGTTACGCATATTCACAATCCTC
GTTCACAGCCTAACTAAAAGGAATGGAAAC	CTGGATCGGCCTATCGATGTAATTTTTGGTGCCTTAGT
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TCGTCCATGAGGGCTGGCACGACCGAAACGCTTCGAG
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TTTGAACGAGCTCATGCGGAGGTTCAAAGGGAAGGA
GTTCACAGCCTAACTAAAAGGAATGGAAAC	TGGCCTTACGATAACGGAAGGCGGCTCTGAGAGAGG
GTTCACAGCCTAACTACTAAGGGGAGCACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015681.1|WP_169311138.1|248183_249005_-|hypothetical-protein	unknown	unknown	gnl|CDD|381743
NC_015681.1|WP_148236918.1|247120_247966_-|cytochrome-C	unknown	unknown	gnl|CDD|372604
NC_015681.1|WP_013906862.1|235801_236035_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl|CDD|198034
NC_015681.1|WP_041434852.1|246727_247033_-|hypothetical-protein	unknown	unknown	unknown
NC_015681.1|WP_013906860.1|232814_233540_+|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl|CDD|187824
NC_015681.1|WP_013906875.1|252598_252973_-|hypothetical-protein	unknown	unknown	unknown
NC_015681.1|WP_013906872.1|249007_249610_-|hypothetical-protein	unknown	unknown	unknown
NC_015681.1|WP_013906857.1|229441_229990_+|Fe-S-cluster-domain-containing-protein	unknown	unknown	gnl|CDD|227208
NC_015681.1|WP_013906867.1|245599_246352_+|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl|CDD|376667
NC_015681.1|WP_013906864.1|236947_237940_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|274695
NC_015681.1|WP_041434851.1|244928_245516_+|hypothetical-protein	unknown	unknown	gnl|CDD|225102
NC_015681.1|WP_013906861.1|233524_235705_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|273707
NC_015681.1|WP_013906865.1|237939_238206_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_015681.1|WP_013906874.1|250451_252599_-|ribonuclease-R	unknown	unknown	gnl|CDD|273947
NC_015681.1|WP_013906859.1|231876_232827_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|274215
NC_015681.1|WP_013906856.1|227965_228919_+|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	gnl|CDD|377130
NC_015681.1|WP_013906858.1|230423_231875_+|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_015681.1|WP_013906873.1|249606_250395_-|DUF4388-domain-containing-protein	unknown	unknown	gnl|CDD|373017
NC_015681.1|WP_013906863.1|236034_236532_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_015681.1|WP_013906731.1|242647_243901_-|IS110-family-transposase	unknown	unknown	gnl|CDD|376564

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015681.1|WP_013906864.1|236947_237940_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1.6e-132	436.2	2.8
NC_015681.1|WP_013906861.1|233524_235705_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	3e-76	251.9	0.1
NC_015681.1|WP_013906865.1|237939_238206_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5.3e-29	95.0	0.2
NC_015681.1|WP_013906858.1|230423_231875_+|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	9e-142	467.8	0.0
NC_015681.1|WP_013906856.1|227965_228919_+|hypothetical-protein	cmr3gr5	mkCas0067_cmr3gr5_CAS-III-C	2.1e-87	287.9	0.1
NC_015681.1|WP_013906859.1|231876_232827_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	1e-75	249.4	0.0
NC_015681.1|WP_013906860.1|232814_233540_+|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	2.4e-20	67.8	0.4
NC_015681.1|WP_013906863.1|236034_236532_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	5.1e-45	148.2	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015681.1|WP_169311138.1|248183_249005_-|hypothetical-protein	gnl|CDD|381743	cd06225, HAMP, Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The structure of the Af1503 HAMP dimer from Archaeoglobus fulgidus has been solved using nuclear magnetic resonance, revealing a parallel four-helix bundle; this structure has been confirmed by cross-linking analysis of HAMP domains from the Escherichia coli aerotaxis receptor Aer. It has been suggested that the four-helix arrangement can rotate between the unusually packed conformation observed in the NMR structure and a canonical coiled-coil arrangement. Such rotation may coincide with signal transduction, but a common mechanism by which HAMP domains relay a variety of input signals has yet to be established.	0.000180124
NC_015681.1|WP_148236918.1|247120_247966_-|cytochrome-C	gnl|CDD|372604	pfam13435, Cytochrome_C554, Cytochrome c554 and c-prime. This family is a tetra-haem cytochrome involved in the oxidation of ammonia. It is found in both phototrophic and denitrifying bacteria.	0.00510994
NC_015681.1|WP_013906862.1|235801_236035_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl|CDD|198034	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain. This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. AbrB is thought to interact directly with the transcription initiation regions of genes under its control. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator. DNA-binding activity in this AbrB homologue requires hexamerisation. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins.	8.41505e-09
NC_015681.1|WP_013906874.1|250451_252599_-|ribonuclease-R	gnl|CDD|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NC_015681.1|WP_013906860.1|232814_233540_+|CRISPR-associated-protein-Cas5	gnl|CDD|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58336e-17
NC_015681.1|WP_013906857.1|229441_229990_+|Fe-S-cluster-domain-containing-protein	gnl|CDD|227208	COG4871, COG4871, Uncharacterized protein conserved in archaea [Function unknown].	4.97313e-46
NC_015681.1|WP_013906867.1|245599_246352_+|sulfite-exporter-TauE/SafE-family-protein	gnl|CDD|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.60255e-29
NC_015681.1|WP_013906864.1|236947_237940_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.50831e-161
NC_015681.1|WP_041434851.1|244928_245516_+|hypothetical-protein	gnl|CDD|225102	COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E [Energy production and conversion].	1.07081e-40
NC_015681.1|WP_013906865.1|237939_238206_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.37039e-31
NC_015681.1|WP_013906859.1|231876_232827_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	6.25846e-86
NC_015681.1|WP_013906856.1|227965_228919_+|hypothetical-protein	gnl|CDD|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	4.89697e-05
NC_015681.1|WP_013906861.1|233524_235705_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	9.9835e-69
NC_015681.1|WP_013906873.1|249606_250395_-|DUF4388-domain-containing-protein	gnl|CDD|373017	pfam14332, DUF4388, Domain of unknown function (DUF4388). This domain family is found in bacteria, and is typically between 102 and 135 amino acids in length.	9.6588e-14
NC_015681.1|WP_013906863.1|236034_236532_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	4.475e-56
NC_015681.1|WP_013906731.1|242647_243901_-|IS110-family-transposase	gnl|CDD|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	9.24147e-24

Protein sequences

>NC_015681.1|WP_013906865.1|237939_238206_+|CRISPR-associated-endonuclease-Cas2
MFVILVYDAGEKRVQKFHKACKKFLHWVQLSVFEGELSKAQLEQLKFELKALMKPEEDSVIIYTFRTRHYFSREVMGKKKGDPDSIFV
>NC_015681.1|WP_013906864.1|236947_237940_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKRSLYIFNPGHIKREGNTLVFISRDGKKALPIETIDSLYVFAEVTFNKKLLEFLSQKKIPVHFFNYFEYYVGSYYPREYMNSGLITLRQAEYYLNREWRLGLARAFVYGALANMLFNLRTYSSRGKELASRIADLEKIIARLNEAQNSAELMALEGQARQSYYQAFDVILANPDFSFEVRTRRPPANRLNALISFGNSLIYVTALSEIYRTHLDPRIGYLHETNQRSFTLNLDLAEIFKPLIVDRVIFSLINRSEIKPEDFTEEMDGIYLKDKGTKKFLEAYEKRLSETIMHKGLGRKVSYRRLIRLECYKLYRHFLGDELYKPYVRTR
>NC_015681.1|WP_013906863.1|236034_236532_+|CRISPR-associated-protein-Cas4
MPNLAHLNGTIFYAYQVCPREAWFYYHRLNPSQEHDLLLLGRLVHEGSYQRARKEIFVDRLLKIDLFRDEMIAEVKKSSRHKEAAKLQLAFYLYYLKHEKGLILSGLLLFPKERKTEKVELKPELEAEIEKLLQEMLPVLTAEKPPPPVKSKFCRTCSFQEMCWG
>NC_015681.1|WP_013906862.1|235801_236035_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MLVTVTSKGQIVIPAPVRKKLNIQKGAKFVVSVEEDKIILEPVENVIRKGKGLLKDGGGEILKYLLEERKREAERFT
>NC_015681.1|WP_013906861.1|233524_235705_+|CRISPR-associated-helicase/endonuclease-Cas3
MAELLAKPDKTLREHLEKVAELARELALRLGLREDLLKRSILAALFHDLGKATRDFQRYMQLLKEGCEKEARHLKPKVFPHALASLNFVFLVEAEIFGEPFLATGAVLSHHSPLSGDLYHTWEGKPVFEKGLEELITHLLEAWKTVLGDIPGPNNFDTIRKIPPLVLLERAHERDGRKVSLRGLIKEAPRWDFARVKAVLHLADWLESSGKQSVDEIFLKDARKAVKDHFSRRKLTPYEFQRRAEESSQNGLALRAPTGSGKTEALLLWAGGAERILYLLPTQATVNAMFQRLKDIYGAKKVGIAHGHASYILHQENEEDFLWERLSSSVFAKPVTVATLDQFLLAGLQGRHWEERLTLAASANIIFDEIHSYEPYTLGLLAEALSDFPAQSLAFASATLPKALLEIFSPENLLEAEEEFFSRKRHRLSLRPFPLKEALPEIIALAQDDHRILVILNTVREAQEIYRELRQNYSDQVYLFHSRFVFRDRLEKERLVQEQRPGTILVATQVVEVSLDISYDVLFTELAPLDALVQRLGRVNRRGERPLAEVKIFTQVGEGSQRVYPEGVLKNSLSLLKDLPKNPAEREWVEAVSLLYEEIVREDSFQRDFDLGRRTLQEVREILGCYTIDLADEELRARFATRKGTPSVEVLPETLLEEAQAFKAQGEAWRLVELLVPVPIWWLHAFKGWFYPSEDLGCFVTRLPYSIEEGLLPPKKDETPEEYEFW
>NC_015681.1|WP_013906860.1|232814_233540_+|CRISPR-associated-protein-Cas5
MEGLAVTVSAPVASFRRPLDINFQRTLLLPPPTTCLGIAGAALGLSEGELWRRGSPLSDLKVSVLLEPSPVTGGDPAVTRDLLKVLKIKNKKISAERSPYFRELLFFSRYTLLFAGKDELLDRLRKAFADPAYPLSLGREDELARIEAIEEAVFSPGEPLLFGTMVPGDLRELEVKVKLAPGLRVEPPSVEVLPAGFEVVKGVRHPVGRKPFTIIPLKCRLEFPKLETLSFRGRNFVWLNS
>NC_015681.1|WP_013906859.1|231876_232827_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSKAISLGYLFKVSAGNVNASHTEGNVMVTKKVTLPDGSTLPYISGQAIRRMLRDRLEDLGWALSEPFCKVSGQEVTPPVRPWDFIDEDLFGYLDPSGGKRRTSPVRVSAAIGLFPFQGDRDLGTRSFEKFGQAMSEGGNMFETELYANLFRGAILIELDRVGSFTTLEINTERIPENLIKEENLFSLHPTEKRNRLQTLLEALSLLWGGGRTARMLADLSPRFLAYARLSVKHPVFLENIEVEFQNGKYRLMLAPLKNAMEKFQDRMEKAIFGLEPGFFVNEEEIRDNLSAYGDVVSLSEAIGKAKKDVEELWKD
>NC_015681.1|WP_013906858.1|230423_231875_+|hypothetical-protein
MASVKISLSRQRGNFWIDNGLVVLYRLFGEGEFEHEQLLEAIVEKLVQETENEGEYVDTETGAIKKYPKKNWLYPANLFIKATPKASKTKIDGKTYFTSPPTYDLKLSFSRKKESCDLCGETAPLTKAKMWNYPFVVEPGKFANFYPGLKRELKICPTCAVAGLAAYLGWLWCAQGREALHIFCFQGDLKDLERLQREIFDHLRLGNKKRNTPLAFYGPYLHETTLGLLLRLFSYVRRNSEEAEKLSDEALELLTKLFGASENPLSRPLVLYVVTGKPGKAFDMQAFKEFSHLATLYRLYEAFVESLPSERPQEILEGVFRQFQKKEGRGYNTIWREKIAAAVLEFGDPLPFIEDFLYEGSEKRPLVFKTLEVFEVYLKEVLNMDAQLLKVIRGFGYTLGSHAQKENEMGLLYALRNAKNLDEFFRVLNDVQYRLGLTVPEDMLAVESGELIKGSPWRRVKTLLSIYAMNAFLRGQTETSKED
>NC_015681.1|WP_013906857.1|229441_229990_+|Fe-S-cluster-domain-containing-protein
MQIKEVSQCLADPERIKVIGKVDIPDLETIMSYLARIIPGATYSENDGWLVFKKGLSIITIYKDSFVAMTYMADREEALKTLKYIEEMARVASANKDKIDLSKPLINQNLTALDIYKLLPQTNCQECGEATCLAFAVKILNSEREISQCRPLFNEEQYQEAKEKLLSLFTLPDNVNSGPQSQ
>NC_015681.1|WP_013906856.1|227965_228919_+|hypothetical-protein
MSFKHYRVVLKLLSPLHIGKRKYRNLMETREYVPGRTLWGALTARITRDHFGADLSKYEEVGTFFHENFRFGYLWPSLDKKNPYFPWEKNDFDYLFKFGYMSQAGDYERKVSDEGQLHEVEYIGPKTRDDRDVYLVGDLWVKEDINSSNKGPFEGIRLEKNDLFFIKTKEEQKEISLKKIFGSLQLGGEKGYGWGRVKLESLTPTNSRKALGGIVFEVDGKDVVLQFAKNQYLTAHALAADWQLKDAENNNGQHFIKIKDGSVEGPIEPLTGYVLKQDNSWGIPSPPICFLPGSKIKENLSVKIAHFGILTNASGIG
>NC_015681.1|WP_013906731.1|242647_243901_-|IS110-family-transposase
MAPEKENNQVLRIIHPICCGLDVHKRFVSACILKTLPDGSIEVEVREFETFTDDLIALREWLIEKDCPIVAMESTGVYWQPIHNILEGYVEVILVNARHIKNVPGRKTDVSDSRWLAELLRVGLLRASYIPPKQVRFWRELVRLRQKHVKTLADYKKRVQKLFESANIKLDNVVSDLFGETGRQIMRLLLETPKPSLEEVRACAKGKLKKKVEELYRSICGFFEEHHRFLLHSLLSIIETLEKEIGIMDIRIKEVMRHHEDLIERLKGIPGVSEVSARAILAEVGPDLRSFPNERALASWAGVCPGNNESGGKRISGKSPVKKHPLRSVLIEVSWAATRKKGTYYAAKYRQLRARRGPKKAIGAIAHKILKAVYFIIKEGQEYRELGANHLKQINRERLLTKIKEEAERLGYKVVAA
>NC_015681.1|WP_041434851.1|244928_245516_+|hypothetical-protein
MFAHGVYFHGHLCPAMPMGLRAGLIARKRLGVERAKSKELMLLSETGTGHLMQCFLDGVMMATGCTYGKGNCQKLYYNKMAFVLIDVVEEKAVRVAVRAEFIKHALEHSPFMKKRQEGIPPEMIEPEIAEAAVNKVLTMPEEELFNISDVYDYHYVYAQEGPPEFCTSCGEVVFGSKARVKKGKIYCIPCSGYKD
>NC_015681.1|WP_013906867.1|245599_246352_+|sulfite-exporter-TauE/SafE-family-protein
MIYLVVSLIILLAAFVFSMLGLGGALLYIPIFKWFGFDFKSVAIPTGLFLNGVTALSAALYYLRAGMVDVRGSLPMVLASFLGAPVGAYFTRFVPTDTLVLLFSFAMVVAGIRMLFASGQAEPTELMPFAKRALITGVASFFIGFIAGLLGIGGGFLFVPLMIAVGYPTKKAAATCSFIVVFSSFSGFLAHVAEGHFDPKLLVATTLAVIVGSQLGARVMRGKMKPKWIKRLFGVLLIAVAIKLAWRVLG
>NC_015681.1|WP_041434852.1|246727_247033_-|hypothetical-protein
MPHPGRLGRGKEMGRGPYEKSGLLRDTSLPPLRKVKETFEIPFPYKDVVKNGKKTRELLADELEIDVKVWYLPYGEFDGYEVLFYKETKKVDLKTEWVWRN
>NC_015681.1|WP_148236918.1|247120_247966_-|cytochrome-C
MAELAARYDSSSCQECHEEIYEQWENSLHARPLYGTGRTAPTIITAIEKGLKRFPYSGVKDIKDIKVKHLMICAKCHLPQLDEATDDVAREIVETLYTWKKALQEGDDDLADEMEEKLNSLNIGCLVCHQKKAIIHPWVDGPVDPKAVYGKDEYEHEFEEYPMVKKAPALGESIFCGQCHGLGPNFELEHPSQCATLYGSYLYAYIPEGGHESCQDCHMKKSGLGHDMQAYRDETMIKMALDVDVDAMSYFWRKNKKEGVIPLAVVNVEIFNKAGHVIPDG
>NC_015681.1|WP_169311138.1|248183_249005_-|hypothetical-protein
MRKDRRFSLADKVALFFIMVFVFGAAGLYYNLTRLQKTELLMSSRVMANMINSLISASSELKGLWVADKKDLKAVATVYGITPNGSQVDLYRIHDPEFMYFVSKLINDPKAKINLDFKSVPPSSETWSLKDGVFVYKKPVLVSKACVSCHQANKGAPSLRLGEAAGAISIKFYDQNLWTLLGQSMSLYAPAVFLLVTLILYVLVRFELIKPLSELTQKVHEMSLGNLDVDLGVKGLAEENSRDEIVKLAISIERLRRSQKTMEKMLDDDSLML
>NC_015681.1|WP_013906872.1|249007_249610_-|hypothetical-protein
MKNLLTSLVKLDEVNAILVSREGQPVFSYLPEFFSSEIQDVLFQSFEEIFAALDQKKDSSSQELVALFEAGSVVVKNVKDYQVLLVLKTPTPGPLVSVALNALSLKLEKLANKQQTPKVQELVPLVLFNEIVKLLAKHYGPAAKLIVKKSLQKAEATDKGLPLANVSLFLKALQEQIDESHLAQQAINKTKDLVRNWRLQ
>NC_015681.1|WP_013906873.1|249606_250395_-|DUF4388-domain-containing-protein
MGQPQRKKEKVVELSGPPIMQGQLKTISLGDVLQLLAGRGERLLVLIHLPDGVGRVFLEGENLFHVEIAGSQYEEGLSALRKLISLKDGRFEVRLPIRWPEEGNLIGPVQALLLEALRQEDEASFKETFFNEDLFEKALEFDPPEVTEREELKPSLLERVSKKFSEADNLILLDKQGEVIEERGESKSEELAGIVSYAVFHLQEIGNLLSLGELSGFALAKKNKLIGAVSLDENIIALKVPFKKGLLWWSKKLIELRKELVQ
>NC_015681.1|WP_013906874.1|250451_252599_-|ribonuclease-R
MAKKKKKSPRQGLPTEKEIVAAMKKAGRPVLLRELYHILNIPTSDRKAFRTLVKRLTKEGKLVHIKGKRYGLPEQMQLVPGKIKIHPDGYGLVEPEDPKKPMVYVPPSRLKGAINGDKVVVRVEVSQRKRPEGTVIRILERAKKYIVGFFYRGKRVSTVIPEDDRFPFEILIPPDATKGAEDGDMVVAEIIDFSPGRKIPEGRIIAVLGDPEDLSTQIKAVIYKYELPFRFSRAVKKELKEIPDEVREEDKAGRKDFRKLLFVTIDGETAKDFDDAVYVRKLPKGWRLYVAIADVAHYVRPNTALDKEAYERGTSVYFPGTVVPMFPEKLSNNLCSLNPEVDRLAMVAVIDFDKEGNRRQMKFYEAVIKSHQRFTYNIVRDIVEKKDPKVRRKYKRFLGMLENAAELCRLLRRKRLARGSIDFDLPEPEVILDAQGQPEDIVRRERHFAHFIIEEFMIAANEAVAEYLTEKGYPILYRVHEPPDLEKLKEFVDFAATLGLELKLPREPEPSWLQMVIEMAEGKPYAYLVSTLLLRSLKQAKYSPENIGHFGLASECYCHFTSPIRRYPDLVVHRALKAALKKKKPPYKLQKLEEMGKHLSDRERTAMEAEREALDRVKVMLMKHRIGEVFDGVISSVTAFGFFVDLFEIYVSGVVRLVDLADDYYVLDEKNHRLVGRRTGKVFQLGDLVRVKVKEVNVSRRHITFELVEKLKSPN
>NC_015681.1|WP_013906875.1|252598_252973_-|hypothetical-protein
MRLLLFLFFLFWASVAQAIVISQQEKELYAAYFFAPERPPTTLGYIFTNFGPGSINYLERVDIVLDRDGKVAGVFLVYTPTDGFRRHVFLKDITGWMFQEVRPNAKGKRVIIRVITSDELNRLN

Crispr_ID: NC_015681_2

• CRISPR_ID: NC_015681_2
• CRISPR_location: 479511-479610
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015681_2

Consensus_repeat	Method
TGAGACTGCTTCGCTGCGCTCGCAGTGACAGG	CRISPRCasFinder

spacers of NC_015681_2

>2.1|479543|36|NC_015681|CRISPRCasFinder
CTGGTTGATGGCTGATGACCGATGGCTGGTGGTGCT

CRISPR arrays and Neighbor proteins around NC_015681_2

CRISPR arrays

The CRISPR arrays of NC_015681_2

>merge|NC_015681|2|479511-479610|CRISPRCasFinder
TGAGACTGCTTCGCTGCGCTCGCAGTGACAGGCTGGTTGATGGCTGATGACCGATGGCTGGTGGTGCTTGAGACTGCTTCGCTACGCTCGCAGTGACAGG

>NC_015681|2|2|479511-479610|CRISPRCasFinder
TGAGACTGCTTCGCTGCGCTCGCAGTGACAGG	CTGGTTGATGGCTGATGACCGATGGCTGGTGGTGCT
TGAGACTGCTTCGCTACGCTCGCAGTGACAGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015681.1|WP_013907086.1|488696_489029_-|FlgN-family-protein	unknown	unknown	gnl|CDD|377465
NC_015681.1|WP_013907075.1|471994_473464_+|UDP-2,4-diacetamido-2,4,-6-trideoxy-beta-L-altropyranose-hydrolase	unknown	unknown	gnl|CDD|274663
NC_015681.1|WP_013907080.1|480299_480734_-|flagellar-protein-FliS	unknown	unknown	gnl|CDD|376819
NC_015681.1|WP_148236972.1|470016_471174_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-transaminase	unknown	unknown	gnl|CDD|274662
NC_015681.1|WP_013907082.1|482827_483313_-|flagellar-assembly-protein-FliW	unknown	unknown	gnl|CDD|237334
NC_015681.1|WP_013907081.1|481102_482782_-|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl|CDD|224264
NC_015681.1|WP_013907083.1|483500_483731_-|carbon-storage-regulator-CsrA	unknown	unknown	gnl|CDD|234973
NC_015681.1|WP_013907084.1|483742_484693_-|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl|CDD|274195
NC_015681.1|WP_013907077.1|474579_476574_-|motility-associated-factor-glycosyltransferase-family-protein	unknown	unknown	gnl|CDD|376693
NC_015681.1|WP_013907088.1|489193_489502_-|rod-binding-protein	unknown	unknown	gnl|CDD|226460
NC_015681.1|WP_013907069.1|465810_466272_-|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl|CDD|234728
NC_015681.1|WP_013907076.1|473450_474503_+|pseudaminic-acid-synthase	unknown	unknown	gnl|CDD|163337
NC_015681.1|WP_041434910.1|489508_490585_-|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl|CDD|376733
NC_015681.1|WP_013907079.1|479697_480033_-|hypothetical-protein	unknown	unknown	unknown
NC_015681.1|WP_013907078.1|476885_479405_-|flagellin-domain-containing-protein	unknown	unknown	gnl|CDD|237440
NC_015681.1|WP_013907072.1|469022_470021_+|UDP-N-acetylglucosamine-4,6-dehydratase-(inverting)	unknown	unknown	gnl|CDD|132628
NC_015681.1|WP_013907074.1|471170_472007_+|glycosyltransferase-family-protein	unknown	unknown	gnl|CDD|133011
NC_015681.1|WP_013907085.1|484708_488695_-|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl|CDD|224176
NC_015681.1|WP_013907071.1|468753_469029_+|hypothetical-protein	unknown	unknown	unknown
NC_015681.1|WP_013907070.1|466869_468411_+|ATP-binding-protein	unknown	unknown	gnl|CDD|313108

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015681.1|WP_013907086.1|488696_489029_-|FlgN-family-protein	gnl|CDD|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	4.32953e-05
NC_015681.1|WP_013907075.1|471994_473464_+|UDP-2,4-diacetamido-2,4,-6-trideoxy-beta-L-altropyranose-hydrolase	gnl|CDD|274663	TIGR03590, PseG, UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.	3.27076e-42
NC_015681.1|WP_148236972.1|470016_471174_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-transaminase	gnl|CDD|274662	TIGR03588, PseC, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.	0
NC_015681.1|WP_013907082.1|482827_483313_-|flagellar-assembly-protein-FliW	gnl|CDD|237334	PRK13285, PRK13285, flagellar assembly protein FliW; Provisional.	1.84215e-57
NC_015681.1|WP_013907081.1|481102_482782_-|flagellar-filament-capping-protein-FliD	gnl|CDD|224264	COG1345, FliD, Flagellar capping protein [Cell motility and secretion].	2.54031e-37
NC_015681.1|WP_013907083.1|483500_483731_-|carbon-storage-regulator-CsrA	gnl|CDD|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	8.41476e-25
NC_015681.1|WP_013907084.1|483742_484693_-|flagellar-hook-associated-protein-FlgL	gnl|CDD|274195	TIGR02550, Flagellar_hook-associated_protein_3, flagellar hook-associated protein 3. This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility].	3.40782e-65
NC_015681.1|WP_013907077.1|474579_476574_-|motility-associated-factor-glycosyltransferase-family-protein	gnl|CDD|376693	pfam01973, MAF_flag10, Protein of unknown function DUF115. This family of archaebacterial proteins has no known function.	2.07628e-38
NC_015681.1|WP_013907088.1|489193_489502_-|rod-binding-protein	gnl|CDD|226460	COG3951, COG3951, Rod binding protein [Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones].	5.60035e-12
NC_015681.1|WP_013907069.1|465810_466272_-|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl|CDD|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	2.29994e-55
NC_015681.1|WP_013907076.1|473450_474503_+|pseudaminic-acid-synthase	gnl|CDD|163337	TIGR03586, PseI, pseudaminic acid synthase. Members of this family are included within the larger pfam03102 (NeuB) family. NeuB itself (TIGR03569) is involved in the biosynthesis of neuraminic acid by the condensation of phosphoenolpyruvate (PEP) with N-Acetyl-D-Mannosamine. In an analagous reaction, this enzyme, PseI, condenses PEP with 6-deoxy-beta-L-AltNAc4NAc to generate pseudaminic acid.	0
NC_015681.1|WP_041434910.1|489508_490585_-|flagellar-basal-body-P-ring-protein-FlgI	gnl|CDD|376733	pfam02119, FlgI, Flagellar P-ring protein.	0
NC_015681.1|WP_013907080.1|480299_480734_-|flagellar-protein-FliS	gnl|CDD|376819	pfam02561, FliS, Flagellar protein FliS. FliS is coded for by the FliD operon and is transcribed in conjunction with FliD and FliT, however this protein has no known function.	2.64072e-25
NC_015681.1|WP_013907078.1|476885_479405_-|flagellin-domain-containing-protein	gnl|CDD|237440	PRK13588, PRK13588, flagellin B; Provisional.	1.93705e-74
NC_015681.1|WP_013907072.1|469022_470021_+|UDP-N-acetylglucosamine-4,6-dehydratase-(inverting)	gnl|CDD|132628	TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase (inverting). This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.	0
NC_015681.1|WP_013907074.1|471170_472007_+|glycosyltransferase-family-protein	gnl|CDD|133011	cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.	2.68859e-97
NC_015681.1|WP_013907085.1|484708_488695_-|flagellar-hook-associated-protein-FlgK	gnl|CDD|224176	COG1256, FlgK, Flagellar hook-associated protein [Cell motility and secretion].	3.47516e-57
NC_015681.1|WP_013907070.1|466869_468411_+|ATP-binding-protein	gnl|CDD|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	9.48664e-125

Protein sequences

>NC_015681.1|WP_013907078.1|476885_479405_-|flagellin-domain-containing-protein
MALNINTNIAALRARNQLNKTSQSLQKSLERLSSGLRINWAADDAAGLAIADGLKMTATGLGQAIRNANEGISLIKVADGALIEYGNILNTLKEKVTQAANATQNAETRKSIQRDINKLLTELNNIARTTEFNGQKLLSGSFVNKKFQIGSASYVTASLSIRSAETNAVGGTKTAIMNLNTIGPMQLTITNAASGLSVTTETIELNYNNNPANGAGALANEINRYSGVTGVTAVAVVESQSDVIQAGTISGLKINGVDIGDITVQAADADGALVSAINAKSLQTGVEATVTEDGKLVLNSVDGRAIKVEADSGLSTVLGKSGQDLSTLGHIRLIQKGVADFQIKGAGGLGIGANIELNGDVTLDDDSVLAAGSTILSGSTLKAGSLVGGDLTISGASTTTQVTLVKAGSTLKTGSIIAEGTQITGDITVSEASLNSDMLVKAGSQLKAGTTIGAGTVVYGTLAEALNVADGTVIGDGGAVLANDVTLNTDIVLKYSSVTNTQIASGSKIAAGSILGADFEITADATFNADMELLAGSTIADGSTLKAGSIIGGDVTVATGATINTTQESRLVQGSTLKAGSVLAQGSVINDADEVEVASDTTLNQDTVIGAGSKLITGTKLAAGTVVNQDMYLSTAEFTYDSNDTRWELNTGDGSVVKVTAGTVLEQDMYVVGTNYTLDTVNSQYVVSTSSDEVTLTNDMVLKAGSMLNTDTSAGINSSVVLKSTGEIGQVETKKLSDINVLTYEGAQVALTIVDAAIADIDGIRAELGSAQNQLQSTVANISVTQVNLKAAEAGIREVDFSAESSNFSKMQVLMQAGMFALAQSNTIPQMAVQLLQGR
>NC_015681.1|WP_013907077.1|474579_476574_-|motility-associated-factor-glycosyltransferase-family-protein
MNIQKQLEEKFKKNLAFFEKEFPEIYEKLLTKGKPKVEIDIISTTQINLIVDNAYVYPVSPKHFSLTQVENFLKSPRSLKSPASLSVPELETIVHTYLRKLCDSFASLGGKEENDFSFDGQNMQCLLMEGLLFGYQLEFLLDRLNIKNLVILEMDVELFKPSLYVLDWPKIARYFKEPGRRLDILIEDDPENLAKALIRLFIEDVSFLYFSFAYNFSMFRSPFWEKFEEKFLYFLQAFFRGWGFYDDEVVSLIHTLKNISQQVPVINLKKKLVPNCSACIVGSGPSLDAQLEWLREKRNSLVIFSCGTATKALEKADIKPDFHVELERTAVNYTALNLVKKEFLEEIPIIASCNVDSRIFSLTREPIMFPKYNDVGGKILYRYGKFEELAFCNPTVTNTGLALAINMGFKEIYLAGVDLGFIEPERHHSTKTIYYDEKSRFNIKKLEDTIPYERKDGKIVYTTGIFLYTKQVMEFLLKQYPVKVYNLSDTLPIEGTIPVSIDKACPNGRKDLIPLEELASNRYQAKIKPLEIAELVLASSARNLKLMKEAFSTELKTPHDLFVLIDNLWEIQKNWEKENEISHIMFGGSVKHFQHLLLTCSFKLPPEKFQGFVEGAKKVFIEFADKALANLEVLRDKIAAGELEEIKPNVLPPSKVEPVFYVLA
>NC_015681.1|WP_013907076.1|473450_474503_+|pseudaminic-acid-synthase
MKEFKIANRKVGNNDSVLIIAELSANHKQDIELAKDTIHAMKESGVDAVKLQTYTPDTITIDCSSEYFQIKGGTLWDGKTLYELYKEAYTPWEWHYELKELAEKLGLIFFSTPFDKTAVDFLEKLNVPAYKIASFEITDIPLIEYAASKGKPMIISTGIATLCDIQEAVEACKRVGNEQIILLKCTSAYPAPLEEVNLKTIPNMAETFNCIVGLSDHTLGISVPIAAVALGAKVIEKHFILYKEIETPDKEFSLTPDEFKDMVNAIREVEKALGQGSYEITEKVKKAKEFARSLFVVKDIKEGETFTGENIRSIRPGYGLHPKYLKNVIGKKAKKFLKKGTPLKWEHIDF
>NC_015681.1|WP_013907075.1|471994_473464_+|UDP-2,4-diacetamido-2,4,-6-trideoxy-beta-L-altropyranose-hydrolase
MDGLRVYILTEGSSSIGFGHVTRCLSLYQAFEERGIKPKFIVNGDKSIVELLKGTNYEIVNWLKEQQKIFKIVKDSDIVVVDSYLTDKNFHENLSKLVKLPVYIDDNKRIDYPKGVVVNGNIHAEGLNYPRRKEVIYLLGTKYIPLRKEFWEVPEKEIRKTIQSVMVTFGGDDIKKMTPKVLKLLNENYPELKKNVIIGKGFHNVDEIKTVADENTNLIYYPNAEEIKQAMLDYDIAISAGGQTLYELARVGVPTIAVAVADNQLKNVKGWEKTGFIEYTGWWKDKYVLDNIIFSIEKLKGFDVRLNRYIIGRRLVDGIGSLRNISKVLKILINKELIFREVKERDIWDIYEISNDNTVRQVSFNSNHIDKEEHKRWFANNYRNNFYVIVFRRKVIGQIRFSVKSENNEAIVSISLHRNYRQLGLGKFLLKKGLKKFLEGNKSITKIIALIKKSNYKSKSLFESVGFEKAENNGEWFRYELTRDKHEGI
>NC_015681.1|WP_013907074.1|471170_472007_+|glycosyltransferase-family-protein
MKIGAIIQARTTSTRLPKKVLKELPYGSGITVLEQVIRRVKRSKLLDEVIIATTINSEDDPIVEISKREGIKCFRGSEKNVLERYYLCAKENKVDVVVRITSDCPCIDWEVIDKVVDRLLEKGLDYVGVERSYPHGCGDVEAFTFKTLEITYKEANNDFEKEHVCPYIYFTNKDKFKINFLKAPSYLTAPDIRVTLDTEEDYALLCAVFDYLYSRNNYFQAVDIINLFKEKSWLKLINRKVLQKKIFHSLEEELEEARKLLELQELNKAKEAIEKWMV
>NC_015681.1|WP_148236972.1|470016_471174_+|UDP-4-amino-4,-6-dideoxy-N-acetyl-beta-L-altrosamine-transaminase
MKYIPYGKQYIDQDDIKAVEEVLKADFITQGPKVPEFEKKLAEYCDAKYAVVFNSGTSALHAAYFAVGLKEDDEFITTPITFVATANAGLFLRAKPIFIDVEANTGNIDASKIEGKISSQTKLIVPVHYAGHPCDMEKIKEIADRYGLSIVEDACHALGAKYKGSKIGSCKYSDATVFSFHPVKHITTGEGGAVLTNRDDIYEKLLMFRNHGVTKEEEKFVKMKEGDWYYEMQFLGFNYRMTDIQAALGISQLKKLDKFVERRRKIVEIYNKAFDYNPYFDIPVEKDYAYHSYHLYPIRLKNNYKDKKKEIFQLLRRKELGVQVHYIPVYMHPYYQQLEYREGESPVAEEFYKREISLPLYPAMTEENVNFVIETVFNMFKEATK
>NC_015681.1|WP_013907072.1|469022_470021_+|UDP-N-acetylglucosamine-4,6-dehydratase-(inverting)
MLDDKVILITGGTGSFGYKFTELTFKKFKPKKIIIFSRDEYKQFEMAKVFPEKKYPIRFFIGDVRDKERLYRAFDGVDIVIHAAALKQVPTAEYNPFEAVKTNILGAENVINAAIDRGVKKVITLSTDKAVSPVNLYGATKLVMERLFVAGNAYAGSKETSFCVVRYGNVVGSRGSVVPFFLKLAKEGKKEFPITDERMTRFWITLEEGVKLVWKVIETAKGGEVFVPRIPSMKIVDLARAISPECKFKIIGIRPGEKVHETLICEEEGRKTKKLDDNTFVILPQFQWRANLLKQYEKLPSVPEKFIYRSDKNDWWLSVDELKEMLKGVKVD
>NC_015681.1|WP_013907071.1|468753_469029_+|hypothetical-protein
MEFYFVEKDQVLELNIDGEQVTYVFLKNEPGKITSDRLYFAPSDEIKRVIDRFREAGYKDFSVKVFTDKSQIFGISSKDRNIAFFEGGKLC
>NC_015681.1|WP_013907070.1|466869_468411_+|ATP-binding-protein
MKRLPVGIQSFENIRTENYYYVDKTQFVKKLVDEGKYYFLSRPRRFGKSLFLDTLRQAFLAKKELFQGLYLENNWDWAIKYPVIYISFGSGVHRSVQELQETENVILKKHEEKYQIQSDFSSIKDRFADIIEKIYQKYGQKVVVLIDEYDKPILDNINKIEIATEIREELKNFYSVLKDADPFLKFVFITGVTKFSKVSLFSGLNNLEDITISPSFAAICGYTQKEFEIVFADRLDGVDLDEVRRWYNGYSWLGEPVYNPFDILLFLRDKIFRPYWFETGTPSFLIKLIIEKRLSVPAFENLELGDEIIESFDVDRIYPESLLFQTGYLTIKEVKKRRAILKYRLGWPNLEVKVSFNNYLLNTFLDLIEKEKNLDRVYEALEKNDIEGLKEAFRAFFASIPHDWYRKTELHHYEGFYASVFYAYFAALGVEVRVEDATSHGRLDMAVLFDGICYLFEFKVVELEGESKALSQLKAKKYHEKYLGRCQKVYLIGVEFSKKERNIVGFEWEEVSS
>NC_015681.1|WP_013907069.1|465810_466272_-|division/cell-wall-cluster-transcriptional-repressor-MraZ
MSFRGRSTHNLDPKGRLSIPARFREVLKQKYGNAALIVTNTPECLQVYPWPEWQKLEEQLLISPFDPPELRLYKRYFLGSAEECQPDRQGRILIPQHLRQEVGIDKEVVLLGMINYFEIWSPGRLENEFNRVRENYPEISASVAGYFVPKNPA
>NC_015681.1|WP_013907079.1|479697_480033_-|hypothetical-protein
MKNFKDVQNLEAFISFQKEEASFLERLLGQRQFSTKDLEALNAFLYERRKYSAILRNLPWQREFIDYLEVILKQEEKSRELLLALRDKISSYIKEFSQKSKAFKNYSSFQI
>NC_015681.1|WP_013907080.1|480299_480734_-|flagellar-protein-FliS
MYNAALNAYRKNAVTTVEDPQKIVKLLFEEAIKELSLTKNFFDEPLKRGKHLGRAIALVGELQAGVNLEKGGEAAEFLYGLYGAIIRELSQLNGNYKQAEEVIERSIRYLSELKRIWVEQVLNLPSQEKTKPSQASERLAVNAG
>NC_015681.1|WP_013907081.1|481102_482782_-|flagellar-filament-capping-protein-FliD
MADEVFGKINVLGLGSGLDLQGLLDNLRTIEEKPIKALEAKKDFYEKRLTEFDWLNTKVLSLKSKSLDFSLESTYLTRQVSVSGSAITAEADVGALEGNYTVEVNQLARKSLWQSQGFAESSSVITPSGDDVLQIQVGDKNFSVLVPQGTTLEGLADLINNSEDNPGVEAKVVNTGAATNPYRLVLKAKDAGEDHRIVVTQELSGVSFEEITGTPNIWSSAQYTNPEDVINNTGSTITLNINVGEASITVDVPDGTTLSGLVDLINNASDNSSLKAYLMRNSDGNYTVQLRSPDAISVTQSPDTPTLFSEVNSNGESLNAFLTVDGISYQRNSNSINDIIPGVTINLKEIGTSSLSVSANYDDIKEKFKSFIDEISSFVKELGDKMSFDVETGEEGPLYRSNAAESLMRDIRNVLTVSFSGNEHIRSLFDLGLNFNRDGSITLDEKKLEKAFAEHPEEIKKLFLGDDDNNFQGIAEKINDTLQKYIGPTGFIALEQKTTERNIEDVKRNIAMSQERVDRYIATLQRQFMALDEYVQQLNNLSSYLDVQFKSMMGLNQKK
>NC_015681.1|WP_013907082.1|482827_483313_-|flagellar-assembly-protein-FliW
MEIETTRFGKIKIEEDKIIFFTSGILGFPEAKRYVLIPHREDSPFLWLQAVDVPELAFVVINPELFFPDYRPEIPEEARKELHIKSNDELGFLTIVTIPKENPADITVNLLGPIAVNIPRKLAKQVVLDARRYPLKEPLRPHLSRFNKSGEENPAQAEAEF
>NC_015681.1|WP_013907083.1|483500_483731_-|carbon-storage-regulator-CsrA
MLVLTRKTGESIAIGHEVEIVVLEVKGKQVKLGIKAPSHVPVHRMEVYQKIQDENVRAAHISVGLDDLDFFSEGKK
>NC_015681.1|WP_013907084.1|483742_484693_-|flagellar-hook-associated-protein-FlgL
MPLRVGMKTMYDSMLYQLNNLTESTRKLQTQIASGVKYEKPSDAPVDLVRALGYRKSLEEIDRYQTSIREGKAYLRTMEGAYQGLEDIVTRAKQLAIQARNSTMSPANREAIAKEVDSLLSEALALANTRHGNRYVFGGDKPTGYEDGHPPFELIKEALPNGEVKEYVVYRGGEEDMDFSYSPDGKLLIGRNGREAIMTSGIFDTLIGLKKTLEADNQSDPHRELEELGVHIDRLDKVLTHLTNERAALGARMDHLDLKSNLYDDLKTTIKENLSDAQDADLLEVATRLKAKETAYQAALAATAKVMNLSLVNYLS
>NC_015681.1|WP_013907085.1|484708_488695_-|flagellar-hook-associated-protein-FlgK
MAGLYSALNIAKNSLLAFQMGVQVTGHNVANVDTEGYSRQKVVNVPYPPTPGPAGPMGSGVKVEQIKRYFDAFLEANLNLKRSDLGLLSAEETGLDLIQGLFNETNPLGLSKMLDDFFTSWQGLSNRAEGIPERRVVLEKGRVLAEAISDKYQNIVNLEQNVRLKLRDVVNEINELAKQIAEINRQITAAESGLHQANDLRDQRDKLVAKLSELTQVRYFENNQGAYAVILGNGYNLVDIDSYWQLEMAGGEVYWLGHSGEKVKLTSKEVSQGKLGGWLRIVEQISNDWNYEYVISTRNVFTPDGKLVKENTTWKELGLTGSVNITFRGTDHFGEEITGSYSTNDDTQTVRDFLNAIEKAYHYKVQAYLTEDGRLVVKDAVQDGGKLSFEITSGPLNFGRFDDEAANHRVEELNLTGKFQLFAKELIRAVNEIHTEGVGLKFYEGELEGTFQSDGTLKSLPFFQDIKGDGSLFVWVKSPNGKITPVKVDFALPSTATMDDVASQINDSLKGLGFDPDSSVKALVRGGRLVFQAKEGYGFAFSNDTAGILAATGLNTFFTGFDAGSIGLNEKLSVNPEYLAAARLDREAWRSENSLVGTYKSRLPIQNPDSIVFNDPPHKLYIRFFDNKGQQILHDTENGFKERELSIDISSGDTLRDIINKLDGIQGLRAYFDGDGRLVLQLDPNSSKNYAYFELGVEAPPPVDNFLAYLRDQGVWVPTYVSARGRQESETWFTDPENTTINEVANVSLNFVFYDAEGKETGRTSITIPNGKSLKDMVSLINATSELRAGFTEGDHGKLFISLENPPEGSVSFKMSVSGGDGDGELNLSDGTKLSLQNIADRQIFSGLEPFTHPGGYVVKLNGADPQNLIFSGQTTVRFFDAQGNELKSINFKTLGTSPNITDTNGNGQIDLDDLAAAFDASPELKAYVNNDELVVSLDSGAPAGTSYFVIEGNDPLHSWGRLTFLNTQGTTDQKDDSYQDLVFPVGIIENWLYDENGKPIDADQANETIDPFRLYLDASAGVVQILQKYNSEANAKFGLTSEFDSQGRLVVNTSGLYDTRSFVLDDAGISGLFDTTLQANRFDSNTGLYLFSTDFSVDKNATFPAQDITVDYLKPNGTSYHTETISFSNSFTLEDFLNNLTSLDYDSDGIADFSYEIDDSGRLFIRVNDPDLDNDGENDWVSFKLTSSLNTPEGNLTTYLARKNIIKTRTMTDDLQGFAPQPGDNRNALRLSALSDASREKLGEASISDYYTAIVGEVGIATKTVKNSKTFMEDLINQLKMMRDSISGVSLDEEMANLIKYQQAFSASAKILTVADEMLDTLIQSKR
>NC_015681.1|WP_013907086.1|488696_489029_-|FlgN-family-protein
MKNPWQRLVEILEKERKAIISGDIEKLLDCLKEKEVLLKDPGLKKAPLSRELRQEITRLSEHNQMLLKAGLAFIEEAYRFLGAQLSPKGSYSPQGKARNLKGAQLLSVEV
>NC_015681.1|WP_013907088.1|489193_489502_-|rod-binding-protein
MKLTGFDLKSVYQLERLAQKHKDKALRKACQEFEAIFLYQILKGLKKTIPESGFWPKSFQRDMYEDLFYQEVSLKMAERGTGLSKMLYRELSRKYGKMAGSK
>NC_015681.1|WP_041434910.1|489508_490585_-|flagellar-basal-body-P-ring-protein-FlgI
MVLLATFFSLNAAYATRLKDLINIEGVRSNNLIGYGIMVGLQGTGDGAQSQFAVQSVVNMLERFGVHVDRNQVKLKNVAAVMVTAELPPFVRAGQRIDVTVSSIGDAKSLQGGTLLLTPLRGPDGQVYALAQGPISLGGFGAAGAGAAAQKNFLTVGKIPSGAIVEREVKVNINGKGVLRLSFRDTDFTTVARAAEAINAYLNGPYAKPLDGRTLALYVPPSYRGKVVSLLADIGDLSVEPDVPARVVIDERTGTVVMGENVRISKVAIAHGNLSVQIKETPQVIQPPPFSAGQTTVVPQTQLQVKEEKARLVVLEEGVSIGELVRALNAVGATPRDLIAIFQAIKRAGALQAELIIM

Crispr_ID: NC_015681_3

• CRISPR_ID: NC_015681_3
• CRISPR_location: 609953-610103
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NC_015681_3

Consensus_repeat	Method
CTCGCAGTGACAAATGTGATCAGGG	CRISPRCasFinder

spacers of NC_015681_3

>3.1|609978|51|NC_015681|CRISPRCasFinder
CTGATGGTAGATGGCCGATGGTGAAAGGGACTGCTTCGTCGCCTGCGGCTC
>3.2|610054|25|NC_015681|CRISPRCasFinder
CTCGCAGTGACAAATATGACCAGAG

CRISPR arrays and Neighbor proteins around NC_015681_3

CRISPR arrays

The CRISPR arrays of NC_015681_3

>merge|NC_015681|3|609953-610103|CRISPRCasFinder
CTCGCAGTGACAAATTGGTAATTGGCTGATGGTAGATGGCCGATGGTGAAAGGGACTGCTTCGTCGCCTGCGGCTCCTCGCAGTGACAAATGTGATCAGGGCTCGCAGTGACAAATATGACCAGAGCTCGCAGTGACAAATGTGACCAGGG

>NC_015681|3|3|609953-610103|CRISPRCasFinder
CTCGCAGTGACAAATTGGTAATTGG	CTGATGGTAGATGGCCGATGGTGAAAGGGACTGCTTCGTCGCCTGCGGCTC
CTCGCAGTGACAAATGTGATCAGGG	CTCGCAGTGACAAATATGACCAGAG
CTCGCAGTGACAAATGTGACCAGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015681.1|WP_013907193.1|593426_593804_-|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl|CDD|223317
NC_015681.1|WP_013907206.1|614067_614265_-|50S-ribosomal-protein-L28	unknown	unknown	gnl|CDD|234736
NC_015681.1|WP_013907207.1|614348_615725_-|replicative-DNA-helicase	unknown	unknown	gnl|CDD|273206
NC_015681.1|WP_013907209.1|616348_616822_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl|CDD|376811
NC_015681.1|WP_013907198.1|599445_600213_-|type-III-pantothenate-kinase	unknown	unknown	gnl|CDD|237349
NC_015681.1|WP_013907210.1|616814_618626_+|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl|CDD|234792
NC_015681.1|WP_013907196.1|596574_597822_-|hypothetical-protein	unknown	unknown	unknown
NC_015681.1|WP_013907201.1|603078_605289_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|238657
NC_015681.1|WP_013907200.1|601001_602780_-|M48-family-metalloprotease	unknown	unknown	gnl|CDD|320704
NC_015681.1|WP_013907199.1|600214_601021_-|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl|CDD|234786
NC_015681.1|WP_013907202.1|606184_609913_+|cobaltochelatase-subunit-CobN	unknown	unknown	gnl|CDD|376805
NC_015681.1|WP_013907204.1|611430_611634_-|hypothetical-protein	unknown	unknown	unknown
NC_015681.1|WP_013907205.1|611887_614071_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl|CDD|223394
NC_015681.1|WP_013907211.1|618689_619538_+|hypothetical-protein	unknown	unknown	gnl|CDD|376616
NC_015681.1|WP_013907197.1|598583_599453_-|LD-carboxypeptidase	unknown	unknown	gnl|CDD|132882
NC_015681.1|WP_013907194.1|593800_595285_-|glycosyltransferase-family-39-protein	unknown	unknown	gnl|CDD|379080
NC_015681.1|WP_013907195.1|595281_595878_-|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239489
NC_015681.1|WP_013907212.1|619605_620247_+|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl|CDD|225102
NC_015681.1|WP_013907203.1|610279_611389_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl|CDD|273015
NC_015681.1|WP_013907208.1|615999_616245_-|hypothetical-protein	unknown	unknown	gnl|CDD|273721

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015681.1|WP_013907193.1|593426_593804_-|fluoride-efflux-transporter-CrcB	gnl|CDD|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	5.27218e-31
NC_015681.1|WP_013907206.1|614067_614265_-|50S-ribosomal-protein-L28	gnl|CDD|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	4.60232e-20
NC_015681.1|WP_013907207.1|614348_615725_-|replicative-DNA-helicase	gnl|CDD|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_015681.1|WP_013907209.1|616348_616822_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl|CDD|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	3.64783e-95
NC_015681.1|WP_013907198.1|599445_600213_-|type-III-pantothenate-kinase	gnl|CDD|237349	PRK13321, PRK13321, type III pantothenate kinase.	3.91333e-99
NC_015681.1|WP_013907210.1|616814_618626_+|excinuclease-ABC-subunit-UvrC	gnl|CDD|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_015681.1|WP_013907201.1|603078_605289_+|TonB-dependent-receptor	gnl|CDD|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.91343e-80
NC_015681.1|WP_013907200.1|601001_602780_-|M48-family-metalloprotease	gnl|CDD|320704	cd07345, M48A_Ste24p-like, Peptidase M48 subfamily A-like, putative CaaX prenyl protease. This family contains peptidase family M48 subfamily A-like CaaX prenyl protease 1, most of which are uncharacterized. Some of these contain tetratricopeptide (TPR) repeats at the C-terminus. Proteins in this family contain the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. They are thought to be possibly associated with the endoplasmic reticulum (ER), regardless of whether their genes possess the conventional signal motif (KKXX) in the C-terminal. These proteins putatively remove the C-terminal three residues of farnesylated proteins proteolytically.	1.22312e-101
NC_015681.1|WP_013907199.1|600214_601021_-|50S-ribosomal-protein-L11-methyltransferase	gnl|CDD|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	1.9815e-30
NC_015681.1|WP_013907202.1|606184_609913_+|cobaltochelatase-subunit-CobN	gnl|CDD|376805	pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase. This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN is implicated in the conversion of hydrogenobyrinic acid a,c-diamide to cobyrinic acid. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis.	0
NC_015681.1|WP_013907205.1|611887_614071_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl|CDD|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NC_015681.1|WP_013907211.1|618689_619538_+|hypothetical-protein	gnl|CDD|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	7.90292e-05
NC_015681.1|WP_013907197.1|598583_599453_-|LD-carboxypeptidase	gnl|CDD|132882	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment of preformed D-Ala-D-Ala dipeptides. Some enzymes possessing LD-carboxypeptidase activity also act as LD-transpeptidase by replacing the terminal D-Ala with another D-amino acid. MccF contributes to self-immunity towards microcin C7 (MccC7), a ribosomally encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. Its possible biological role is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	7.55735e-75
NC_015681.1|WP_013907194.1|593800_595285_-|glycosyltransferase-family-39-protein	gnl|CDD|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	3.83031e-32
NC_015681.1|WP_013907195.1|595281_595878_-|phosphatase-PAP2-family-protein	gnl|CDD|239489	cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	9.94305e-32
NC_015681.1|WP_013907212.1|619605_620247_+|TraR/DksA-C4-type-zinc-finger-protein	gnl|CDD|225102	COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E [Energy production and conversion].	2.02153e-41
NC_015681.1|WP_013907203.1|610279_611389_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl|CDD|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.988e-124
NC_015681.1|WP_013907208.1|615999_616245_-|hypothetical-protein	gnl|CDD|273721	TIGR01622, transcription_coactivator_CAPER, splicing factor, CC1-like family. This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.	0.00351075

Protein sequences

>NC_015681.1|WP_013907202.1|606184_609913_+|cobaltochelatase-subunit-CobN
MKKVVAAMWNSYIPPLLKAAQAEGLFNLKMWATRKLEDQDVLEAFLQECQEADLIVLYATSEGFWEELAKELKSLYPEKPVIWSGFEAAWWGHSFKGAELGGTVYRYLLYGGEENLKNLVRYLAAQGLGLEVSYGPPKELPWMGIYHPEAPEPFEDLKSYLSWYKPAPEKPWVGLLFSRQYWVNGDLAVENEAIKTLEAQGLNVLPVFAYSLEDKSLGTKGSRGAVEAFFLDKEGRPTIDALIKLIPFFLGTRSRALADTSASTSGVELLKKLNVPVFQPLGLYYQTEEEWRKNPQGLTQEIGWALAMPEFEGVIEPIPIFAVNREEDPETGTLLEERRPIKERIRHLAARIAGWLALKHTPPEDRRLVFVLHNNPCASVEATVGGAANLDALESVVRILRDLKARGYRVENIPENGEALAQEILSRKAISEFRWTTVDEIVKKGGALELISLEQYLRWWREFPEEVRQKIEAAWGRPPGEPKDGVPASMVYKGQIVVTGLRFGNVLVCVQPKRGCAGPRCDGRVCKILHDPDIPPPHQYLATYRYFEDVFGAHAVIHVGTHGNLEFLPGKGAGLSEACFPDLAIGHLPHLYIYNADNPPEGVIAKRRSYAVLVDHMQTVMQEAGLYGELEALSNLLGEYEEARKNHGARAHALEHMIVDSLKKAGLYGEVMEELGEEKDDFLALCRVIHETLNRLKGTQVQDGLHIFGEVPEGERLAKFLRAIVRYDLNENPGWQRAWEDEEIWQALVEGKFDSQLLAKFSDLWARVEDLKARVRASREREALLRALDGGYVPPGPSGLITRGRDDVLPTGRNFYTLDPRRVPTKAAYKVGQRLAEAVIEKYLAEHGKYPENIALYWMANDIMWADGEGMAKILALIGVRPVWLGNGRVKGFEVIPLEELGRPRIDVTIRVSGITRDNFFDCITLVDKAIQAVAMLDEPPEKNFVRKHTLAKLESLKKKFSAKEAKRRATFRLFASKPGTYKAGVNLAVYASAWKDERDLADVFVYWNGYAYGEEAFGQEAHLELAENLKSVSLTFNKTVTDEYDLFGCCSYFGTHGGLTLAARELSGHKIPVYYGDTRDPSKVEVRTLAAEIRRVVKAKLLNPKWIEGMKRHGYRGAGEIAKRIGRVYGWQATTREVDDQIFDDLARTYALNKENRRFFKEHNPWALEEIARRLLEAESRGLWQANPEVLRRLKEAYLEVEAVLEDAMAAGEFGPQGGSVDVITSEEVASWREKMQKLHQ
>NC_015681.1|WP_013907201.1|603078_605289_+|TonB-dependent-receptor
MYFWSLFLALILSMFTASQAKAADNAVSLGEVVVTATKTETPLKDVPASVTVITKKDMEDKHLVTIDKALENEAGVYVRRTKGLMDTLASVTLRGIPYQKRTLILLDGVPINDGYYGGVPWNNLSTYNIDRIEVVRGAYSALWGGNAMGGVVSLFTELPTKLTYWAKGGFGGGESVTQGYRLGLGNRIGDVSFLLGFEKDIDHGYSNSLVLRSPKSGSGTLMGGYPMLDKTGTELKWVVGDKGDNWGRRENYNAALGWTFSPDGFLKLSYQHGWSSYGYGPPHTYVYDPATDEPSFSGNVSLPDGQYVSVKPSNYIYYTGIGRNQTDLWTLNAKNKFGKAETNVTLGYIKRDKYYTTTKTYTKDYYTADGNLAKTKADTFYTDLNSAFDLFANHLLTVGITYRLDKADTKEYDLSFYRDPDSKGDETYRSGGYVGTLGLFAQDKWALRDDLDLFLGLRYDHWWTYNGYSSVDGSYPSRDTGTASPKIALVWNPLQDTTLRLSYGKAFRAPNVYELYRTWVSSWGTTYHANPNLDPEKAYTTELSLTQKLWDGRLNFEASIYSTKLEDLIYRKSVGSDKYYINAGEGRIYGFEAGIKAKPTHWLNLGINYTRNDTKITSNPADPSSEGKRFVKTPPWIWNFNIGIEMPKVTFAFNGHYVGKVYHEEDNSDVAEGVYATSEDYFVADLKTTVYLPTPSWLAGDRLALSLSINNLFDKDYFDYYKAPGRSWFLSLELKR
>NC_015681.1|WP_013907200.1|601001_602780_-|M48-family-metalloprotease
MLYTDAIYLILAILLFSSWPAEATLPLPEIFLAWFIKEISLLLLAVYKFKRARTARDFISAQTFLKFLAFGCFALDVIILEIPAFIPQEKSFLKDLVGVILFLHYLILVWAVAAFYEKRSPLANISVPAYVLSHLKLLFPFLLPWFLVNALFSLLEGRLPFNQGIYGELFYFVCFLGAIILLMPPLAVKTWECKPFPVSNIRRIIEDYISRERARLGGIYLWETFRGKLLTAGVIGVVPRFRYLLISRGLLATLEEAEVLSVVAHEIGHIKRHHMFWLLTFFVLFSLIIYFAFIPLYLVFLAYFPRPDLLVLWGGENLLLPEALLTIGLAVSVVLYFRFLLGFFLRNFERQADLYCLESLGTAQGLVRAFKKIAAISGHTEDVPSWHHFSIRQRIEFLEAAESDPTLISRHHRKVKLCLVSYLFLAVLLIGLFNRLPAEHLEKRARLNLYYGELLEEARVFGNPEVLALLGHVAYELGREKEALNWYEKALTLKEDPEILNNMAWILATTKDKALKDPKKALSLAQKATAQKLTAIHLDTLAEAWFANGNPQRACLYATLAARRAELAPDFYENLRYYRQQKEKFCHAERTP
>NC_015681.1|WP_013907199.1|600214_601021_-|50S-ribosomal-protein-L11-methyltransferase
MLRGHHKRYHKLYLYSFDRKHPALHEIDDEDFIGCWEEDGLAIVFFHKPKDALLDRLAKELGLTIEDRAEVSYDEWSEGRKISCLKFGDIVLRPVWEEGPGLKFDPGVVFGSGNHPTTKLCLSWIYKLWQEYGPFEKVADLGCGAGLLSLLSASLGAQVLAVDFNPLCVELTRKNLALNHLEHRATVYCEDVKKLVPFEADLVIANLFKGLLLDLFGLPSFWQNRYYLFSGFSPAMEKELREALWPKARIKGREEENGWVIWFVENEV
>NC_015681.1|WP_013907198.1|599445_600213_-|type-III-pantothenate-kinase
MILAVDIGNTNTTCGFFAEDELLFRFRLFSSLNQTADELALRLNGLLELRGKSLADIKHLLIGSVVPPLTKTWLEMASIYGIEDVKVATPEKIGIPVKLRYPCEVGVDRVLNALAGWHKYRQSLIIVDYGTATTFDCISEKGEYLGGAIAPGVMAAAETLFKKTSKLPRLEFSKVPEEIIGKDTISAMRTGVLWGFAALTDGLITRLAGEFEKKPYVIATGGLAKLMARLSLQIKEVEPDLTLEGLVIWFKKKNE
>NC_015681.1|WP_013907197.1|598583_599453_-|LD-carboxypeptidase
MNKPVLFIGARGAVFSPAGVPDPKKIANGVNFLKTWGLEIDVDPECFKNCRYLAGRDEERALHLVSLLEKPYTFLWASRGGYGSLRLLPLLDELIERIRHPVWIIGFSDVSILLNYFFSRFGLLTLHAPVISSIFEVSLCTLAVLKNTLFGRKRVFLIGEVWREGEAQGLLIGGNLVSVASLLGSRWAPDFSGKILFLEEVNEDLYRLDRLVTQLYNYGVFEEISGLALGEFKGVNYQEIIPLFKEVFNGPILAGLPVGHGIKNYPLVIGARTHLCTRYGQAYLLQDIY
>NC_015681.1|WP_013907196.1|596574_597822_-|hypothetical-protein
MGKKFLMVLVAFLLMASGAYAVDIKFSGSMLNLVGASNNITGIDSGDYSDANKEGDIFGATRVRPTMTVTSDDGMAKFVYGAEIGGAVWGDSGSVGKGVGFGFEGDGVNVETRLAYGVFSLEPFGAPGAVAMGLQPVSINGAVYDDNAAGITYDYKTDAYSLLLGYVWNNSDYNETELKNTNGFSNDDDHLAFIKLDYKVDDTTTLGGFFAYEDPYGSDNTKYYFGFTGNTMVDPVELAWDIIYLGGKENANVDRSAWYMDFTAGFQVNEQLKLAGSVIYSSGDDDPNVDKNKTFEDAEKSKNMAPGILFANGYLGAFIDGASYGQYGYFGLMLDSAYKIDDKSSLKGAVIWHNLAKDNAAGDKDLGLELNGTYKYAYNQNTTFFVEAAYIVVGDALAKNADDVYYIGSGFKFKF
>NC_015681.1|WP_013907195.1|595281_595878_-|phosphatase-PAP2-family-protein
MAAPHLNILKLLANLDKDLFFWLNHQRHPVLDVLMPYISLEKLIYAFFLFFGAILVCQFRWRGLLAALLTWLAVLGTDFTCGQVLKPHFQRQRPLAVHSNVYVYDYGQKKWHLTKEPRGASKSYSLPSCHAANVACAATIFAALFPRISLLFWLFALAVAYSRIYLGVHYPFDVAIGFLIGYLFGTAGKIPVLRVLRE
>NC_015681.1|WP_013907194.1|593800_595285_-|glycosyltransferase-family-39-protein
MKTFFNSLFSPAGLILLVLLAGRISFIQLIGLNLSPDEAYYWDWSRHLAWGYYSKPPMIAWIIHVFTHVLGVSEYGIRVPAALFHTAYLAFVFYLGKLLFDEKVGFWAMVAAAASPLAAVYSFVMTIDPPLFAFWALALCLAWQAAESQKFKDFFFLGIVIGLGLLTKQTMIAFLVFFFVWLALSREKRSLLKSPKSYLVALIVFLMILPNLLWNAKHGWITFKHTSHHFEEEWLNFLGPLIFLGEQAGVITPIIFGLMLFVFALFLSKEKLRNNEKLLFLFVFSALPLALVLPLSLLRKVNANWPYPFYAAGFVMLSALVLRGSWGESQKRLVRGLFFAGIILGMLVMMATYQLARTPEIFPPKLQRLLYKFTDWRDFASWVQKERKNQELVITLRRDFASELAFYLPDRPHTYTFWQGYVKSQYDLWDGLHKRLGEDAILVLSSRSEAKRYASCFEKLVFLGQYKKNIFGKKRQSVIFKGYNLKMCPYLDKR
>NC_015681.1|WP_013907193.1|593426_593804_-|fluoride-efflux-transporter-CrcB
MKSYLLVGAGGFFGAIARYWVSGLALHFSTRFPLGTLVVNALGSFLLGFLMTLASEALLVSPEMRMFLAIGFLGAFTTFSTFAYETNSLLEGGQFFLAFLNVAISLSLGLIGVRLGIWAARTFLI
>NC_015681.1|WP_013907203.1|610279_611389_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MNPDIYFMRIALKEGRKGLGRTSPNPPVGAVVVKDGQIVGKGYHRLAGTPHAEVHALREAGEKARGATIYVTLEPCNHYGKTPPCTQAILKAGIKRVVIGARDPNPKAQGGADFLRVNGLEVTTGILAEECAELCRFFLKTVKERRPWIIAKAAMSLDGRIATRTGDSKWITGEKARRFGHRLRHICDAILVGKNTVLKDDPLLTCRLKGGKNPVRIILDSKLSLPLDRQVFLNKEAQTVVACNNEAPRNKEKELKKLGVIVWRLPVENSQVDLKALLKRAFNQDILSILVEGGAEVHGSFFDQGLVDEIAFFYGPVIIGGKSSPCAIGGDGPALLAQASRLSKFSFKRLGDSLLVRGYLTEPISLLSF
>NC_015681.1|WP_013907204.1|611430_611634_-|hypothetical-protein
MARPELVKNITREQKVSRLSPENEVVLKTTKEIVVKFIEMGRCSPASFDEVFKQVFRTIKETVTTEE
>NC_015681.1|WP_013907205.1|611887_614071_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MENKYVVRLSDILDQIQSYLPGADTRLVEKAYVFAAKAHAGQVRRSGEPYLAHPLSVAYILARMKLDLPTIAAGLLHDTVEDTDVTIEDIKKHFGPVVAEIVDGVTKIAHLSARSKVHKQAENFRKMLLAMAEDLRVILVKLADRLHNMKTLEFMPDHKRKRIAQETLDIYAPLASRLGIDWLKQELEDLSFMYLYPEEYKTLREEVEKVVAARQDFIDEIKKVIKEKLDEEGIEAKVLGRRKHLYSIFRKLQRNNLAIDQLYLIYDIIGLRVIVKKVKECYEVLGIIHSLWKPIPGRFKDYINLPKANMYQSLHTTVIGPGGRQMEIQIRTEEMDRVANEGIAAHFLYKEQKIINAGTGKNKQLEWLERLVELQKELKNPRDFIESLRMDLFPDEVYVFTPEGDIKVLPVGSTPIDFAYAIHTEVGHHCAMAKVNGRLVPLDYELQTGDIVEIVTTSHQKPSRDWLKFVKTSRAKSRIKQWLKQEEKQRIFTAGKEILDREFRKAKLTLSAFMEDERAQEVAQKLSFKTVEELIIAVGYGKITPQQVVKRYLHEKQKEEAPRPSEEELIKIKKKQTIPKIPDSISVDGSGDMLFHLSKCCKPLPGDEVIGYVTRGRGITVHRADCPNLEGLDPERLIDIKWDSSDGATYTAKLWVITVDRKGMLASVSNAISAQEANILEASVRTTKDQRALFDFVIEVLNRAHLDKIMAAVKQIEGVIRVERRFA
>NC_015681.1|WP_013907206.1|614067_614265_-|50S-ribosomal-protein-L28
MSKVCEICGRRPHTGHQISHSAKRSGRWWYPNIQRIRVKLPNGQVRRMKVCTRCIKAGKVQKAVS
>NC_015681.1|WP_013907207.1|614348_615725_-|replicative-DNA-helicase
MPRAKKREQLFDRVPPQDIEAEKCVLGSIFLDNNALLKVVEFLNPGDFYRAAHGAIYRTMLELFNRNEPIDLVTVHAALKERDLLEQVGGAAYLAELAELVPTAANVVYYANIVREKSILRRLIMASTEIVTRCYEGADPVDDLLEEAERAIFEIRAQGNKRSFFPLKEVIKDAVLQIEQLHQRREEVTGVPTGFYEFDRLTAGLQNSDLIIVAGRPSMGKTSFALNIAHHAAVEHGIPVGIFSLEMSKEQLAMRMLCADARVDAQALRTGKLTDADWQRLTYAANRLSKAPIFIDDTAAISVLELRAKARRLMAEHGLGLIIIDYLQLMRGKERRERREQEISEISSSLKAMAKELNVPVVALSQLNRRVEERPDKRPQLSDLRESGAIEQDADVILFIYRDEVYKKDTLDKGIAEIIIGKQRNGPTGVVRLAFLSQYSTFANLDEDHQAAMAAEVF
>NC_015681.1|WP_013907208.1|615999_616245_-|hypothetical-protein
MKDLIKKGLAGAFALGLLVVPPVFAGKGKGRGDCDKDRDRIHQKLQDCDYTRDRLHLRDRDLDRDRLLDKDMDRDRDRIHW
>NC_015681.1|WP_013907209.1|616348_616822_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRVGFGFDVHRFIPDRKLILCGVEIPYHLGLLGHSDADVATHALIDALLGAAGLGDIGEHFPDSDEKYRDVSSLILLKKTIELIHNNGFKFVNADLTIVTEKPKISPYRRVMKEKLAEIIGCSPKVINIKGKTTEKLGFTGRGEGIAAYAVALITHD
>NC_015681.1|WP_013907210.1|616814_618626_+|excinuclease-ABC-subunit-UvrC
MIDQELIKKKAPTAPGVYLFKTSKGEVLYVGKAKNLRKRLQSYLRPDQPYKTRVLLAKAEKLETIVTRSEKEALVLEANLIKKHRPRYNVILRDDKAYPLLRLSLKDEFPRLSVVRRRRKDKALYFGPYPSAGAVRQTLKFLSRFFPLRRCSNAEFRRRERPCLYHQIGRCSAPCVGLITPEEYKKIVDGAVAFLKGKAKELLKSLYQEMEEAAENLEFEKAAALRDRIFAIERTLEAQAVNLPREEDLDVFALASQGDKVSGAVLFVRSGALLGKKTFNLSRVSNENDELYSSLVQQFYDEGKYIPHEILLPCEPSDRELLEEWLSEIAEHKVVIKVPKRGAKKELLDMARQNAKEALAARLAGERPYEELAEKLAIILRFKKIPLRVEGVDISNIQGQLPVGVVVSFWEGQEDKSRYRRYHIKSIEGPDDYAMIYETVLRHLNRRLSENDLPDLILIDGGKGQLQAALAAAEEMGLLKEIDFCALAKERDKEGEKIYLPNRKNPLKLARHTEVLRFLQRVRDEAHRFALSSHQKRRKKATFESLLDQIPGVGPKRKKRLLKHFGSIEKIKSANIEEITSLPGFNRRVAWEIKKILGTGEKI
>NC_015681.1|WP_013907211.1|618689_619538_+|hypothetical-protein
MPRIPRLLTNHPKAAYHVISRTALPGHNVLGPEEKEHLLNLISWLSQVYFVEVYGFAIMGNHFHLLCRMLPEDKFSDEEVARRIKLYYRGKRKVFIYKELLAKWRERLASLSRYVQDIKQRFSRWYNKRVDRKGYFWADRFKSVIIETGEALLNCLAYIELNPVRAGIVEKPEDYRWCSLGYRARLGTGKNFLSLDLGLPSYADKSEQEKLRLYREFVYGKGGIGEPEKLTKTKEFVYRTRYFSESLVIGSKRFLEETGKEIKKFFSKKQQKLIPDRGILIL
>NC_015681.1|WP_013907212.1|619605_620247_+|TraR/DksA-C4-type-zinc-finger-protein
MNIFEVPFEEILAESVKTHGHLCAGQVIGVRMALLGLRLIGIKDPKGADRKKFLVFVEIDRCATDAIQSVTGASLGKRSLKFLDYGIMAATFLNLETKEAYRIIAREEARELSKNYFPEIPDKYRRQLEAYRVMPEEELFDIQKVEVELSDFDLPGRPLKRVQCEACGVWVQDGREVLKDGRVLCRPCAHGSYFRLAGFTPELGKIGQKLKKK

Crispr_ID: NC_015681_4

• CRISPR_ID: NC_015681_4
• CRISPR_location: 918034-919769
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 22 spacers
• Cas_protein_info: cas3

Consensus repeat of NC_015681_4

Consensus_repeat	Method
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	PILER-CR
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CRISPRCasFinder
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CRT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAT	PILER-CR

spacers of NC_015681_4

>4.1|918071|43|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TGGTTAGGTAGTCGTGTTCATACACGACTACCCGGTAGTTAGG
>4.2|918151|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AAATAATGTTCATAAAAACAAGATTCACAACATGGTTCAT
>4.3|918228|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TGTGTTTTTTGGCCCACAAAACGGCTTTAGCATCTAAAT
>4.4|918304|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCTGAAGCCAACTGGCTCGACAATATAATATACATTTAT
>4.5|918380|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ATTAACACACTCTTCACAAACTACACCAAAACCTTCAACA
>4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTTATTGTTACTTTTTCATTTTTATTTATTGGTAACCA
>4.7|918532|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ATGAATTTTTTATCAATTACATCTGAAAAATCAACTA
>4.8|918606|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCAACATCAGCTAAGAAACATCTGACAACAACCTCTTCAC
>4.9|918683|43|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
>4.10|918763|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
>4.11|918840|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
>4.12|918916|43|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
>4.13|918996|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
>4.14|919073|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
>4.15|919149|43|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CTTTGAAAATCCTCGGCCCCGTTGTGATTTTCCCTGAAGACCA
>4.16|919229|42|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CCAGCACCTCTTCCTCATCAAGCTCATCCGTACTAGCGAACC
>4.17|919308|40|NC_015681|CRISPRCasFinder,CRT
GCCTTGTCTATCATGTTTTCGGTGCTGCTGAAGACAACAA
>4.18|919385|39|NC_015681|CRISPRCasFinder,CRT
ATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT
>4.19|919461|38|NC_015681|CRISPRCasFinder,CRT
ATTGCTTTAAGATATCATATTGTTTATTTATGAATAAA
>4.20|919536|44|NC_015681|CRISPRCasFinder,CRT
CTTGGTTTATTTCCCATAAAAATTCAGTATCGTTATTTTTTAAC
>4.21|919617|39|NC_015681|CRISPRCasFinder,CRT
ATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT
>4.22|919693|40|NC_015681|CRISPRCasFinder,CRT
GTTGGGGAGTTGTTGTCGTTTAAAATACTTTAAATACCGG
>4.23|919538|42|NC_015681|PILER-CR
TGGTTTATTTCCCATAAAAATTCAGTATCGTTATTTTTTAAC
>4.24|919619|37|NC_015681|PILER-CR
GTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT

CRISPR arrays and Neighbor proteins around NC_015681_4

CRISPR arrays

The CRISPR arrays of NC_015681_4

>merge|NC_015681|4|918034-919769|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTGGTTAGGTAGTCGTGTTCATACACGACTACCCGGTAGTTAGGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAAATAATGTTCATAAAAACAAGATTCACAACATGGTTCATGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTGTGTTTTTTGGCCCACAAAACGGCTTTAGCATCTAAATGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCTGAAGCCAACTGGCTCGACAATATAATATACATTTATGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATTAACACACTCTTCACAAACTACACCAAAACCTTCAACAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTTTATTGTTACTTTTTCATTTTTATTTATTGGTAACCAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATGAATTTTTTATCAATTACATCTGAAAAATCAACTAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCAACATCAGCTAAGAAACATCTGACAACAACCTCTTCACGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCTTTGAAAATCCTCGGCCCCGTTGTGATTTTCCCTGAAGACCAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCAGCACCTCTTCCTCATCAAGCTCATCCGTACTAGCGAACCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGCCTTGTCTATCATGTTTTCGGTGCTGCTGAAGACAACAAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATTGCTTTAAGATATCATATTGTTTATTTATGAATAAAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCTTGGTTTATTTCCCATAAAAATTCAGTATCGTTATTTTTTAACGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGTTGGGGAGTTGTTGTCGTTTAAAATACTTTAAATACCGGGTGAGAAAACCTTGCCTGATTAAGAAGGCAAAGGGAC

>NC_015681|4|2|918034-919307|PILER-CR
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGGTTAGGTAGTCGTGTTCATACACGACTACCCGGTAGTTAGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAATAATGTTCATAAAAACAAGATTCACAACATGGTTCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGTGTTTTTTGGCCCACAAAACGGCTTTAGCATCTAAAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTGAAGCCAACTGGCTCGACAATATAATATACATTTAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTAACACACTCTTCACAAACTACACCAAAACCTTCAACA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTTATTGTTACTTTTTCATTTTTATTTATTGGTAACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGAATTTTTTATCAATTACATCTGAAAAATCAACTA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAACATCAGCTAAGAAACATCTGACAACAACCTCTTCAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CTTTGAAAATCCTCGGCCCCGTTGTGATTTTCCCTGAAGACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAGCACCTCTTCCTCATCAAGCTCATCCGTACTAGCGAACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGCCTTGTCTATCATGTTTTCGGTGCTGCTGAAGACAACAAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATTGCTTTAAGATATCATATTGTTTATTTATGAATAAAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCT	TGGTTTATTTCCCATAAAAATTCAGTATCGTTATTTTTTAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAT	GTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT


>NC_015681|4|4|918034-919769|CRISPRCasFinder
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGGTTAGGTAGTCGTGTTCATACACGACTACCCGGTAGTTAGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAATAATGTTCATAAAAACAAGATTCACAACATGGTTCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGTGTTTTTTGGCCCACAAAACGGCTTTAGCATCTAAAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTGAAGCCAACTGGCTCGACAATATAATATACATTTAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTAACACACTCTTCACAAACTACACCAAAACCTTCAACA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTTATTGTTACTTTTTCATTTTTATTTATTGGTAACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGAATTTTTTATCAATTACATCTGAAAAATCAACTA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAACATCAGCTAAGAAACATCTGACAACAACCTCTTCAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CTTTGAAAATCCTCGGCCCCGTTGTGATTTTCCCTGAAGACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAGCACCTCTTCCTCATCAAGCTCATCCGTACTAGCGAACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GCCTTGTCTATCATGTTTTCGGTGCTGCTGAAGACAACAA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTGCTTTAAGATATCATATTGTTTATTTATGAATAAA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CTTGGTTTATTTCCCATAAAAATTCAGTATCGTTATTTTTTAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTTGGGGAGTTGTTGTCGTTTAAAATACTTTAAATACCGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCAAAGGGAC

>NC_015681|4|2|918034-919769|CRT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGGTTAGGTAGTCGTGTTCATACACGACTACCCGGTAGTTAGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAATAATGTTCATAAAAACAAGATTCACAACATGGTTCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGTGTTTTTTGGCCCACAAAACGGCTTTAGCATCTAAAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTGAAGCCAACTGGCTCGACAATATAATATACATTTAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTAACACACTCTTCACAAACTACACCAAAACCTTCAACA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTTATTGTTACTTTTTCATTTTTATTTATTGGTAACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGAATTTTTTATCAATTACATCTGAAAAATCAACTA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAACATCAGCTAAGAAACATCTGACAACAACCTCTTCAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CTTTGAAAATCCTCGGCCCCGTTGTGATTTTCCCTGAAGACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAGCACCTCTTCCTCATCAAGCTCATCCGTACTAGCGAACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GCCTTGTCTATCATGTTTTCGGTGCTGCTGAAGACAACAA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTGCTTTAAGATATCATATTGTTTATTTATGAATAAA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CTTGGTTTATTTCCCATAAAAATTCAGTATCGTTATTTTTTAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTTGGGGAGTTGTTGTCGTTTAAAATACTTTAAATACCGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCAAAGGGAC

>NC_015681|4|3|919499-919694|PILER-CR
	TGGTTAGGTAGTCGTGTTCATACACGACTACCCGGTAGTTAGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAATAATGTTCATAAAAACAAGATTCACAACATGGTTCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGTGTTTTTTGGCCCACAAAACGGCTTTAGCATCTAAAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTGAAGCCAACTGGCTCGACAATATAATATACATTTAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTAACACACTCTTCACAAACTACACCAAAACCTTCAACA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTTATTGTTACTTTTTCATTTTTATTTATTGGTAACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGAATTTTTTATCAATTACATCTGAAAAATCAACTA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAACATCAGCTAAGAAACATCTGACAACAACCTCTTCAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTAATAGAGCTCGTGGTCAACCTTTCGTTCTAAGTAGTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCGAGGCTGTTTATTTTCGAATTGTCAAGCCACCTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTGGGTATTGAGGGCAATCCAATTGCATCCCGTAATTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CTTTGAAAATCCTCGGCCCCGTTGTGATTTTCCCTGAAGACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAGCACCTCTTCCTCATCAAGCTCATCCGTACTAGCGAACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGCCTTGTCTATCATGTTTTCGGTGCTGCTGAAGACAACAAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATGTTCCTCTACGATATCATGATCCACAAGAGTTAGTTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATTGCTTTAAGATATCATATTGTTTATTTATGAATAAAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCT	TGGTTTATTTCCCATAAAAATTCAGTATCGTTATTTTTTAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAT	GTTCCTCTACGATATCATGATCCACAAGAGTTAGTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015681.1|WP_013907491.1|909616_910507_+|hypothetical-protein	unknown	unknown	gnl|CDD|235562
NC_015681.1|WP_013907497.1|916174_917404_+|MFS-transporter	unknown	unknown	gnl|CDD|340863
NC_015681.1|WP_013907489.1|909003_909372_+|hypothetical-protein	unknown	unknown	gnl|CDD|309308
NC_015681.1|WP_013907507.1|930235_931633_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl|CDD|273648
NC_015681.1|WP_013907506.1|929068_930214_+|radical-SAM-protein	unknown	unknown	gnl|CDD|275116
NC_015681.1|WP_013907494.1|913177_913714_-|permease	unknown	unknown	gnl|CDD|281730
NC_015681.1|WP_013907501.1|921943_922861_-|SurA-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|234605
NC_015681.1|WP_013907504.1|928220_928496_-|50S-ribosomal-protein-L27	unknown	unknown	gnl|CDD|235464
NC_015681.1|WP_013907488.1|908069_909014_+|hypothetical-protein	unknown	unknown	unknown
NC_015681.1|WP_013907499.1|920645_921425_-|DNA-repair-protein-RecO	unknown	unknown	gnl|CDD|234622
NC_015681.1|WP_013907496.1|915040_916165_+|cysteine-desulfurase	unknown	unknown	gnl|CDD|224029
NC_015681.1|WP_013907493.1|911489_912998_+|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl|CDD|235711
NC_015681.1|WP_013907495.1|913710_914193_-|permease	unknown	unknown	gnl|CDD|281730
NC_015681.1|WP_013907500.1|921428_921944_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|224343
NC_015681.1|WP_013907492.1|910560_911490_+|hydroxymethylbilane-synthase	unknown	unknown	gnl|CDD|234612
NC_015681.1|WP_013907503.1|926692_928195_+|GGDEF-domain-containing-protein	unknown	unknown	gnl|CDD|143635
NC_015681.1|WP_013907490.1|909385_909613_+|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl|CDD|378250
NC_015681.1|WP_148236979.1|919956_920574_-|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl|CDD|224527
NC_015681.1|WP_013907505.1|928507_928819_-|50S-ribosomal-protein-L21	unknown	unknown	gnl|CDD|235510
NC_015681.1|WP_013907502.1|922857_926361_-|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl|CDD|224118

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015681.1|WP_013907502.1|922857_926361_-|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	7e-14	46.3	0.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015681.1|WP_013907491.1|909616_910507_+|hypothetical-protein	gnl|CDD|235562	PRK05687, fliH, flagellar assembly protein FliH.	5.97014e-06
NC_015681.1|WP_013907497.1|916174_917404_+|MFS-transporter	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.33498e-68
NC_015681.1|WP_013907507.1|930235_931633_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl|CDD|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_015681.1|WP_013907506.1|929068_930214_+|radical-SAM-protein	gnl|CDD|275116	TIGR04311, Radical_SAM_domain_protein, putative metalloenzyme radical SAM/SPASM domain maturase. This model describes a family of radical SAM/SPASM enzymes largely from the deltaproteobacteria. The family is most closely related to radical SAM enzyme family regularly in archaea in the vicinity of tungsten-containing oxidoreductases. A single member of the family in archaea may correspond to multiple tungsten enzymes, e.g. five in Pyrococcus furiosus. Therefore, the lack of a conserved gene neighborhood for members of this family in deltaprotebacteria suggests members may be involved in the maturation of multiple metalloenzymes.	1.0112e-34
NC_015681.1|WP_013907494.1|913177_913714_-|permease	gnl|CDD|281730	pfam03773, ArsP_1, Predicted permease. This family of integral membrane proteins are predicted to be permeases of unknown specificity.	2.05848e-08
NC_015681.1|WP_013907501.1|921943_922861_-|SurA-N-terminal-domain-containing-protein	gnl|CDD|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	2.0344e-27
NC_015681.1|WP_013907504.1|928220_928496_-|50S-ribosomal-protein-L27	gnl|CDD|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	4.09096e-54
NC_015681.1|WP_013907489.1|909003_909372_+|hypothetical-protein	gnl|CDD|309308	pfam04126, Cyclophil_like, Cyclophilin-like. This domain has a cyclophilin-like fold, consisting of an eight-stranded beta-barrel with an alpha helix located between the beta-2 and beta-3 strands and a 310 helix located between the beta-7 and beta-8 strands. The catalytic site found in human cyclophilin is not conserved in this domain, suggesting a different function for this domain.	5.36372e-54
NC_015681.1|WP_013907499.1|920645_921425_-|DNA-repair-protein-RecO	gnl|CDD|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	3.07166e-30
NC_015681.1|WP_013907496.1|915040_916165_+|cysteine-desulfurase	gnl|CDD|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	2.30287e-172
NC_015681.1|WP_013907493.1|911489_912998_+|uroporphyrinogen-III-C-methyltransferase	gnl|CDD|235711	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase.	3.60072e-131
NC_015681.1|WP_013907495.1|913710_914193_-|permease	gnl|CDD|281730	pfam03773, ArsP_1, Predicted permease. This family of integral membrane proteins are predicted to be permeases of unknown specificity.	1.21777e-05
NC_015681.1|WP_013907500.1|921428_921944_-|helix-turn-helix-domain-containing-protein	gnl|CDD|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	3.31271e-26
NC_015681.1|WP_013907492.1|910560_911490_+|hydroxymethylbilane-synthase	gnl|CDD|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.10493e-173
NC_015681.1|WP_013907503.1|926692_928195_+|GGDEF-domain-containing-protein	gnl|CDD|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.6928e-64
NC_015681.1|WP_013907490.1|909385_909613_+|zinc-ribbon-domain-containing-protein	gnl|CDD|378250	pfam09723, Zn-ribbon_8, Zinc ribbon domain. This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.	7.046e-12
NC_015681.1|WP_148236979.1|919956_920574_-|TIGR00730-family-Rossman-fold-protein	gnl|CDD|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.55007e-57
NC_015681.1|WP_013907505.1|928507_928819_-|50S-ribosomal-protein-L21	gnl|CDD|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	7.69088e-54
NC_015681.1|WP_013907502.1|922857_926361_-|transcription-repair-coupling-factor	gnl|CDD|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0

Protein sequences

>NC_015681.1|WP_013907497.1|916174_917404_+|MFS-transporter
MPILGEIANNLILPLRLRNFRVFFIGQSFSLLGTWIFVTAQRWLLYDLTNSAFFLGILGAIGSLPILLFSIPAGYLADHLPKRNLLLLSQSVAALQAGILTFLVVSGRVEVWHILSLAFLLGCTVALEFPVRHSFIFDLVGEDSLVTAISLHSTAFNLARFLGPAIAGFLMAHFGLWTCFLANTLSYLPIIFALAIIPLSENHKGVSKKPWEGLKDGFIFVLNSRQIRRILLLIATTSIFVLPYAVLLPAVVRENFGGGGKEFSFLMAANGLGTLTGAIFMAAFGRNIPKDRFIPANMALLCIYLGGMILSKKFYLACVLLIMSGFHMVCMFTSANAFLQLNSPDDLRGRILSLFSLSFLGLFPLGSFWAGTTAQYFGPKWTLLAGLTIALVLSIWQGLIPSLKKAENR
>NC_015681.1|WP_013907496.1|915040_916165_+|cysteine-desulfurase
MKQIIYLDYNATAPVLPEVREVVDFYLVEAFGNPSCSHKVGQVAKKGLEEARKNVASLIEANPQEIIFLSGGTEANNLAILGMTLAQEKKKHVITSQIEHPSVLNPMIKLLEMGFDVSFLPVDSQGYVDPDELKKALRPDTFLVSIMLVNNEVGTIQPVAEIGHICRERDIVFHTDAAQAVGKLPVSVKEINCDLMTIAGHKMYAPKGIGALFIREGISLRPLMHGASQEKGLRPGTEPVALACGLGKAASIAKKDLIAEGAREKILREKLYQGLKDIYPRLVLHGDPERTISNTLSISFPGLSASQILANLPEICASTGAACHNKAQAISHVLSAMGVSKEVALGTMRLSLGRGTSDQDISRAISLFKRVLVS
>NC_015681.1|WP_013907495.1|913710_914193_-|permease
MNKTAFLINIFAFACLFVSLIRNKEKTKQSLIVAVKSFFRILPMVFIIIIVIGLLLGFVPPAKISDVIGEQAGFGGLIFSAFLGTILYIPALISFPLAASLLKGGASVTAVAAFITTLTMVGIVTLPLEIKELGKKIALLRNGISFIFAIIIALIIGALL
>NC_015681.1|WP_013907494.1|913177_913714_-|permease
MKKDKALKGAIRDVILLGITLSIAIILLSIFPDRRDMVFTTSWEFFVEMIWILPAVMILMGLFTLWVSKDMVVKYLGRTSGIKGFFLALLFGALPTGPLYVAFPMAAALIKKGARISNVIIFLNAWACIKLPQEIVELQFLGPKFTALRLILTIIFTVIMATSIERLIEWSNNRNGVS
>NC_015681.1|WP_013907493.1|911489_912998_+|uroporphyrinogen-III-C-methyltransferase
MPGKVYLIGAGPGDPGLITEKGRRVIAKADVIVYDYLANPRFLALTREDAEKIYVGKKGGDHTLSQEGINQLLVEKAKEGKTVARLKGGDPFLFGRGGEEAEVLVEHGIPFEIVPGVTSAIAAPAYAGIPVTHREHTSTFTMVTGHEDPTKEDSAIDWEALARIGTIAFLMGMKNLPRICENLLRHGKPEDTPVAVVRWGTTPRQKVVVGNLGNIVAKVEEAKLGPPSIILVGEVVKLREKLNWFETKPLFGKRIVVTRTRAQASQLVESLEECGAECLEIPTIKIVPPDSFEPLEQAIEQIETYDWLIFTSVNGVQVFFERLFARGKDARALANTKVAAIGVATAELIKKYGLLVDLLPQEFRAEGLLEALLKEELAGKKVLIPRALEAREILPEKLREAGAEVEVVPAYQTILPEEEATRLKKELEQGVDVITFTSSSTAKNLLKMLGDEARSLLSEVVLASIGPITTETLKKAGFTPQVEAKEYTIPGLVKAILEYFRA
>NC_015681.1|WP_013907492.1|910560_911490_+|hydroxymethylbilane-synthase
MRKHIKVGTRGSKLALAQTNWVIGQIKERYPEIQVETVIIKTKGDKILDVPLAKVGGKGLFVKEIEDALLREEIDLAVHSMKDVPTELPEGLEIAIIPERESPYDVVISQGGESIDDLPSGATVGTSSLRRSAQLKAYRPDLKIENLRGNLDTRLRKLNEGLYHAIIVAQAGLIRLGLKEERAKPISPEIMLPAIGQGALAIEVRESDHDLKEGLSFLHHEETAICVAAERAFLATLEGGCQVPLAAFARLSGDNLTVEGLIADPSGETILKEELKGPKEEAQALGRKLAEILLGRGGRKILDEVYGRA
>NC_015681.1|WP_013907491.1|909616_910507_+|hypothetical-protein
MHYDIASKVILSRCKEPFLSFFCGLPVKKAFLIEERPQETTSLRRADFVLKTVLEDNEELLVLVEFFSSWKAWYPLRTLECRCRHLLEENIPVKTFCFLFTPSAGAKNYYRDEEVNYQFNLIKLYEIDAEMVVEKGPECLLAFVPILKNGEKFIDEAEKKIYQSETSRETRADLLTGMAILGGLISPEIPLKLVQRRRDLMIESAAYEIIKKEGFEEGLKEGLQQGIQQGIQQGIQQGLKEVLLDVLEERFGILPVSVISQINAISSAELLKSLSRAAVRAKSLEEFKDLLKRVNE
>NC_015681.1|WP_013907490.1|909385_909613_+|zinc-ribbon-domain-containing-protein
MPIYEFTCSECGETFEELVLGGSYDGIKCPKCGSEKVEKIMSACAFKCGANFVSASGSSACSSCTATSCSSCSGK
>NC_015681.1|WP_013907489.1|909003_909372_+|hypothetical-protein
MKLKLIFDEIVAEIELADTPCAKAIFEAAPFTSRVNLWGEEIYFATPVAFGLDETAKEVVELGDVGYWPDGKALCLFFGKTPISTPSEIRPASAVNIVGKILSPLEDLKRVPEGLEVKVEKA
>NC_015681.1|WP_013907488.1|908069_909014_+|hypothetical-protein
MPVKPLDFSGLKTYSLFERPSKVSVEDLARPLSPGLSFKEFLACLPKELAAKDLLAVARAMAHAIKNKRPVIWGFGAHVIKVGLTPIIIDLMRRGFISAVMVNGACMVHDSELAMAGITSEDVAQALKDGSFGAAKETGELVNRAAKEGCKQGLGLALGKLLAEGDYPYKDLSLFASAYKLGVPVTVHVAIGTDIVHMHPTADGAAIGEASFYDFKVFCRLVADLEGGVFFLAGSAVLLPEVFLKALTVVRNLGYKVEKFTTVNFDFIRHYRPLTNVVNRPTMTGGKGYHITGHHEILIPLLAGALLEELSHEA
>NC_015681.1|WP_148236979.1|919956_920574_-|TIGR00730-family-Rossman-fold-protein
MAEFVEGFEELPKVYPAITVFGSNRVKPGHPYYQKAEEIARLLAKEGFSIITGGGPGIMEAANKGAAEAGAYSVGLNIRLPREQEANPYANIKIEFRYFFVRKVMMAKYAVGLLCMPGGYGTLDEFFEIITLVQTHKIRPVPIVLVESKYWHGLVTWIKERLLHEGMISREDLDLFTVLDDPREIAAYFKKTARAYKLLSHLETT
>NC_015681.1|WP_013907499.1|920645_921425_-|DNA-repair-protein-RecO
MNVVVQAIILSSQTLGEKDVRLELLSAERGRLAAVAKGGRKSLKRFVNTLEPFSLIQAHLRGGKVNLPPFLDQADLLNPFENLRFEPLTFAKAAYLSELVECFFKVGTGQAFFSFFEESLYVLNKGLDFWPLLKISFELSLLKASGFFPYLGESCLRCEKPLKRDVFFSFTEGGVVCENCAFEEDFALDLKLLAFLNHIAHVSPMRLRIIKPGAENLKRAERLIENFVLRVLNQEINSLRVLKEMFNNKSLANSHGGRP
>NC_015681.1|WP_013907500.1|921428_921944_-|helix-turn-helix-domain-containing-protein
MSEGQNKNGFGEYLRHQREIRGFSLEEISSQTRIGLRALKALEAEDWEILPAEIYIRGFIRSYCETIGLDPNEALIRFEEAYAPFRRHKTEKIQEMSYEKESQKEIPWRLIAILILVILLITGGYFLFFKEEKKSASQLAPLIEEIPLKKDEANTPKNPSPTLPKLPGSAE
>NC_015681.1|WP_013907501.1|921943_922861_-|SurA-N-terminal-domain-containing-protein
MKKAILFIWVIFWAVNVQAQIVDRIVAVVNDEVITLSELDEAAAPLYQEYLKGVQDPAERERIKKEIRQRVLQELIDEKLINQEIERQGITVSPEEIDKFIEHFKRQNGFDDKAFQRFLTEQGLTLAKYREKVAQQIKRIKLVQSRVSQIVVTPEEIERAYQKKYGKLITKYEIAAIVISGPQAEIKIKKAYQELKKGKDFAEVAAEYSQIPDSGHSLGTFSPEELAPEVRNILAKLHPGEISPPVKVGHTWQIFKLLQVKKEKAKPLSEVKQKIEEKIRQKKIDQLLKNWQKELREQAYIRILL
>NC_015681.1|WP_013907502.1|922857_926361_-|transcription-repair-coupling-factor
MTLKLSEKFENIKEFLTGGKGRLKVSGLTEEALACLLRLAEAQKGIILLPEESQCLRVKEALNFFGFTNVFHYPAEDVLPFGGVYHSPVISAARIAALYQFRTRKKALIILSAKALLRKTLPPGALNKFYEYVVLGEELPREKFLENLINLGYEKTGLVQRVGEFSIRGGVIDIFPAGETFPVRIDFFGDEVESVKRFDPETQRSFEEIEELVILPAREIILSFDPSGLEERLFKRLSDYGLPPDKESSYLRTLETGLVLEPEEFWLPLVYEKPASFFDYLEPKDTLIIFEPEKVIDEIARFEERLVLSWRKAKEGKRVLVEPQESFLTQKEALSLLDNHAKILEISKLPVLEEGLSFEIKDHQAHLESIKAFPKEAIERGLKYLQEIASKERTVITSPHEKSAEKIKSLVERELGFMEIPLKKEAFNAFAAPFEMAIYVGTISRGFIWPELSLAIIPEHELFGVRKPLTTQKARSLKETFLRFEDLKPGDFVVHREHGIGRYHGLVSLEIGGLPGEFLLIEYKDGDKLYLPVDKLNLLHKYVGLEGKEPSLDRLGGKSFEARKKKVQKAIEEVAQELLSLYAARKVGQGFSFEPGPLLRQVEASFPYEETPEQAVAIEETLKDMQKPTPMDRLVCGDVGYGKTEIAIRAAALAVENKKQVAILVPTTVLAEQHFRTFYERLSPLGIKVAVLSRFKSPKEQKEILKKLAQGEIDIVVGTHRLLSNDVSFKDLGLLIIDEEHRFGVKHKEKIKQLRKNVDVLALSATPIPRTLQLSLLGIRDLSVITTPPEKRLPIKTYLARFDEQVIKEAIERELNRKGQVFFVHNRIKGIYALADWLRRLVPQARIEVAHGQMPSQKLEEIMVRFVRREIDVLVCTTIIESGIDIPSANTIIINRADRMGLAEIYQLRGRVGRSNVQAYAYLLVPSLSGLSEDAERRLKALMQFTELGAGFKLAMSDLQIRGAGNLLGTFQSGHVAAVGYDLYLEILKHTIDEMRGKPLEEEVESDVNLKVPAYFPASYIPDVEQRLHLYRRLALARTREAIEELALEIEDRFGILPKEVENLIKLSLLKAILRSFKVRKLDRRGKEVIFYFDPSAQIDEKLWRKLARKRGLGLRITKDNKLILSLATSEVLEELLSFLEEVKKALAKLPEKIYFLSEQKNLAEAR
>NC_015681.1|WP_013907503.1|926692_928195_+|GGDEF-domain-containing-protein
MKVLKELARQKELDLPSFPPLAIKLVEAVKEGSFEKLAKLIQLDPALSSKVLKLANSPFFSHGKKVEDLKSAIAILGTEMLQNIALSFILIKHFTQKGKGKFDFAHFWRRSLTAAIAASLLAEECGLSRERLYLGALLMDFGILVMYHLYPDDYIQVLESKKIEEISILEAEKRVFGITHPEVGKEIIAIWKLPSYLESFILYHHNPDVAPDILKKEIEILYLADRTSSIYFTNRTADKYSIVLERANKILGLSFQTTESLIDKTANKAQEIFAIFDLVSYEIIPYSLILAEANKELKRININYALLLQQLKEEKERAERLAKKLKESNIRLREIALKDALTTLYNRHYFQKRLEEEIERSFRYNQPLSIAILDIDFFKNINDKYGHLCGDKVLKTLAEILREETRKSDILARYGGEEFVILLPSTNLQGAKTLAERLRQKIEKYEFSCEKYKFSITVSFGVASLDPKKKTTVIDFLSAADKALYISKRQGRNRTTAVQL
>NC_015681.1|WP_013907504.1|928220_928496_-|50S-ribosomal-protein-L27
MAHKKAGGSSKNGRDSHSKRLGVKRYGGQFVKAGNIIIRQRGTKIHPGYNVGLGKDYTIFAKIDGIVKFETRHGRKVVSVYPPEELAAQAA
>NC_015681.1|WP_013907505.1|928507_928819_-|50S-ribosomal-protein-L21
MYAVIKTGGKQYKVRPGDTIRVEKLPGEPGQEIELTDVLLVAKDDDLKIGQPLVEGAKVIATIVNQGRSKKIIVFKKKRRKNYKKKMGHRQYYTELQIKEISA
>NC_015681.1|WP_013907506.1|929068_930214_+|radical-SAM-protein
MKHINIKKLQIEITSYCNLDCDYCIKNSQAKTTQTHLTLESFEEILQKYTAQEFVLYGFGEPLLHPQIENLIELARTKGKVFLLTNGTIIPKLKEIASRVDSLGVSVDSLQKSNLRKLQFQEILEVVDKLTEIVPISLSTVLSTENIDNFLTLVTWAGERHINISATNLVPYNQNMARKALFLELSKKAINVCQRFLKNLNDAEELLKGITSLSTKAQKSYQEILDNLEGYHLNLEALVKGWPKIEQAQKAEKILEEAREKAFKFNINIDLPRMFADEKRRTCPFHEAIFIRSDGRVAPCAELAYTHPLFVNFRQKEVQEYLSFSDEFALKKKDIVKNYPWCGDCQLVDGCWFLEESMDCYGNYPSCSECLYSAGLARCIL
>NC_015681.1|WP_013907507.1|930235_931633_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MKAIVLAGGSGTRLWPLSRKDYPKQFLKLNGGKSLLRQTVDRLLLFLNPEDILILTCEHYKFHVKAHLVDLSGYHLLCEPHARNTGPAIAYGFKYALEKWGLPSDEPVLICPSDHLIEPEDVFAETVQKAAQVAKEGFLVTFGITPSRPETGYGYIKQGERLKEVNDFSAYKVARFTEKPDVATAENYLKEGGYYWNAGIFLFTPETFSKELATCAPDIFALYDNDFDTLTSKFAEMPDISIDYALMEKSSQVAVVPLSLYWNDIGSWDALFDVLEKDSSGNAQTGRVITIDTENSMILGQKRLIATIGLEDHLVVETPDAILIVKKGEAQKVSNLVKQLKNEGYPEALEHVTTYRPWGSYTVLEEGPRYKIKRIVVNPGERLSLQMHYHRSEHWVVVRGTAKVQIGDEEIFLHENESVFVPKSTKHRLENPGKIPLEIIEVQNGEYLGEDDIVRFDDVYGRSKK

Crispr_ID: NC_015681_5

• CRISPR_ID: NC_015681_5
• CRISPR_location: 1410352-1414024
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 47 spacers
• Cas_protein_info: cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas2,cas1,cas6

Consensus repeat of NC_015681_5

Consensus_repeat	Method
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	PILER-CR
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CRISPRCasFinder
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CRT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	PILER-CR

spacers of NC_015681_5

>5.1|1410389|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ATTATCAGAGTAATATGTATACTGTTTTCTGAAGCCAACT
>5.2|1410466|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ACATAAGCCCGCTCTCTTCGACCTCCTCGAGATACTCCTC
>5.3|1410543|41|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TGCCTCTCCTTCCTCAATCCAGAGTTCGAGGCTTCCGCCAT
>5.4|1410621|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AATTTAACTTTTGCCAAATACTCTTTTTTCTTTTCCATC
>5.5|1410697|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CCACTCAATGAGAGCGGATGGCTTGTCGGAGACGACTTTT
>5.6|1410774|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCAATGAGAGCTGGTAATTTAACAAATAAATTATTTCTT
>5.7|1410850|43|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CCCTGGCACAGTCGGGACAAACGTTCATATAGTGACCTATTAT
>5.8|1410930|43|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AGTCGTGCCCGATGAACAAAACCACACCTCAATAGAGCCACCA
>5.9|1411010|41|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CCCGTAGTTACGGGCTGCTATAGCCAGAGTACTCGGGTTTG
>5.10|1411088|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ATTACTTCCATTTCTTTACCTCCCTTTTCTTATTTTACT
>5.11|1411164|42|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GGACTCACAAAGAGAGGTCCTTTGAAAATCCTCGGCCCCGTT
>5.12|1411243|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCTTAAGAAAGGAAGCTGTTGCTTCTTTTATTTTTTCTC
>5.13|1411319|42|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTCTTTTCCATCTCTCTTTACCTCCCTTTTCTTATTTTACTT
>5.14|1411398|42|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTTTTCCATAGCGCTGCTCCCCTTTTTTTGCTTAACTTACTA
>5.15|1411477|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCTATAAAATAAAATTGAAGCTCTGCCTTTCCATTTC
>5.16|1411551|43|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CCCCGCTCTCCCTTCTTTCCTTGTCCTTACGCTACATTGTAAG
>5.17|1411631|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TTGGAGACACTCGGGGCATGCATAACTAAAAGAAAGGT
>5.18|1411706|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GTTGATTACTATTAATACTATTTTTTTCATTTTTTCCT
>5.19|1411781|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TATAACCATTGTTTTCTAATACCTTATTAATGACACTAG
>5.20|1411857|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AGTCCTGAGGCCTTCGGTAAGAACAAGAAACAAAAAAAGC
>5.21|1411934|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GAGACGACCTTTACGGTCGTCCCGGATACATCAAACCAC
>5.22|1412010|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
GTCTCACAAAGAGAGGCCCTTTGAAAATCCTCGGCCCTGT
>5.23|1412087|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CAGACAAGCTGGCTCTCAAAATACGCCGTTTGGCGGAGAT
>5.24|1412164|41|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CCTTAGCAGGCCTCCAGGCCTTGTCAGGAAACCTCAGGACC
>5.25|1412242|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TCAACATCAGATAAATAACACTTCACTATGTATTCCCT
>5.26|1412317|39|NC_015681|PILER-CR,CRISPRCasFinder,CRT
CACACAAGACCATCATTCATTCCAGCCACATAGGTCTGG
>5.27|1412393|40|NC_015681|PILER-CR,CRISPRCasFinder,CRT
TGGCAATAGGTAAGAGTCCAGTTGCTGTGGCCAGTAAGCT
>5.28|1412470|41|NC_015681|PILER-CR,CRISPRCasFinder,CRT
AAACCACAACACAACTGTACTGTTCCTTAGCCTCTCAATAC
>5.29|1412548|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT
ACTATCAGCCAATTTAACTTTTGCCAAATACTCTTTTT
>5.30|1412623|38|NC_015681|CRISPRCasFinder,CRT
AACTGTGTATTCCACATTGTCTTCTAACCTAACTGCTG
>5.31|1412698|45|NC_015681|CRISPRCasFinder,CRT,PILER-CR
GTAGCATGGTGATTTACTCGAAATATTACTTTGCCCAGCCAGGAC
>5.32|1412780|41|NC_015681|CRISPRCasFinder,CRT,PILER-CR
TATACTCTTCAAACTCGCCATAGAGCTGCTTCAGCTCTATG
>5.33|1412858|41|NC_015681|CRISPRCasFinder,CRT,PILER-CR
AGGTCATCTTCTATAGAAAAACTGTAAAAAAGTTTAAAACA
>5.34|1412936|42|NC_015681|CRISPRCasFinder,CRT,PILER-CR
CACTTCTTCTTCCCAAGGACATTCGACTCCTGCAGGCTTCTC
>5.35|1413015|40|NC_015681|CRISPRCasFinder,CRT,PILER-CR
TGCGTTGCAGGGTGGTAAAAAACGAGCCATTCTGAGCCCT
>5.36|1413092|40|NC_015681|CRISPRCasFinder,CRT,PILER-CR
AGTTGTCGCAGGTCCATAGGACGGCTGATTCCCAACCGTG
>5.37|1413169|43|NC_015681|CRISPRCasFinder,CRT,PILER-CR
TCTCTCTTCTCGCTCCTGCAACGTAATGCCGTTAAGGTGTTCG
>5.38|1413249|43|NC_015681|CRISPRCasFinder,CRT,PILER-CR
TTGGTCCAAGGGAACACGAAATACTTAAGTCTTCCTCAATAAC
>5.39|1413329|39|NC_015681|CRISPRCasFinder,CRT,PILER-CR
TCAATGAGCCAATCTATTATTTCTTGGCGGGAGAGCATC
>5.40|1413405|42|NC_015681|CRISPRCasFinder,CRT,PILER-CR
TAATTACCCTCAACGACCAGGACTCCGCCGTCCTGGTCAAAC
>5.41|1413484|40|NC_015681|CRISPRCasFinder,CRT,PILER-CR
CCAGTTATGTCCACAACTTCTTTGTCTATCTTGTCTATCA
>5.42|1413561|40|NC_015681|CRISPRCasFinder,CRT,PILER-CR
CCAAGGCTAGCCCAAGGGCCTTTCTATTCTTCGTATGCAT
>5.43|1413638|42|NC_015681|CRISPRCasFinder,CRT,PILER-CR
CGACTTCGTCTCTCATGGAAAGCTTATGCTTTCCAACAAACC
>5.44|1413717|41|NC_015681|CRISPRCasFinder,CRT,PILER-CR
AGAGATATTGTCCTGTCCAGCCAGGACGGTGTCGTCCTGGA
>5.45|1413795|37|NC_015681|CRISPRCasFinder,CRT,PILER-CR
AAAACACCATATTGTTTATTTATAAATAAATTAACTC
>5.46|1413869|40|NC_015681|CRISPRCasFinder,CRT,PILER-CR
ATGCCGACACAACCAAAACAAATTCATCGGTGGCAATCTT
>5.47|1413946|42|NC_015681|CRISPRCasFinder,CRT
ACCTCCTTTTATTTTTGATTTATTCCCGGAAGTTTCCAGAGG

CRISPR arrays and Neighbor proteins around NC_015681_5

CRISPR arrays

The CRISPR arrays of NC_015681_5

>merge|NC_015681|5|1410352-1414024|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATTATCAGAGTAATATGTATACTGTTTTCTGAAGCCAACTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACACATAAGCCCGCTCTCTTCGACCTCCTCGAGATACTCCTCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTGCCTCTCCTTCCTCAATCCAGAGTTCGAGGCTTCCGCCATGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAATTTAACTTTTGCCAAATACTCTTTTTTCTTTTCCATCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCACTCAATGAGAGCGGATGGCTTGTCGGAGACGACTTTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCAATGAGAGCTGGTAATTTAACAAATAAATTATTTCTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCCTGGCACAGTCGGGACAAACGTTCATATAGTGACCTATTATGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGTCGTGCCCGATGAACAAAACCACACCTCAATAGAGCCACCAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCCGTAGTTACGGGCTGCTATAGCCAGAGTACTCGGGTTTGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATTACTTCCATTTCTTTACCTCCCTTTTCTTATTTTACTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGGACTCACAAAGAGAGGTCCTTTGAAAATCCTCGGCCCCGTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCTTAAGAAAGGAAGCTGTTGCTTCTTTTATTTTTTCTCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTTCTTTTCCATCTCTCTTTACCTCCCTTTTCTTATTTTACTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTTTTTCCATAGCGCTGCTCCCCTTTTTTTGCTTAACTTACTAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCTATAAAATAAAATTGAAGCTCTGCCTTTCCATTTCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCCCGCTCTCCCTTCTTTCCTTGTCCTTACGCTACATTGTAAGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTTGGAGACACTCGGGGCATGCATAACTAAAAGAAAGGTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGTTGATTACTATTAATACTATTTTTTTCATTTTTTCCTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTATAACCATTGTTTTCTAATACCTTATTAATGACACTAGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGTCCTGAGGCCTTCGGTAAGAACAAGAAACAAAAAAAGCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGAGACGACCTTTACGGTCGTCCCGGATACATCAAACCACGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGTCTCACAAAGAGAGGCCCTTTGAAAATCCTCGGCCCTGTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCAGACAAGCTGGCTCTCAAAATACGCCGTTTGGCGGAGATGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCTTAGCAGGCCTCCAGGCCTTGTCAGGAAACCTCAGGACCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCAACATCAGATAAATAACACTTCACTATGTATTCCCTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCACACAAGACCATCATTCATTCCAGCCACATAGGTCTGGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTGGCAATAGGTAAGAGTCCAGTTGCTGTGGCCAGTAAGCTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAAACCACAACACAACTGTACTGTTCCTTAGCCTCTCAATACGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACACTATCAGCCAATTTAACTTTTGCCAAATACTCTTTTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAACTGTGTATTCCACATTGTCTTCTAACCTAACTGCTGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACGTAGCATGGTGATTTACTCGAAATATTACTTTGCCCAGCCAGGACGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTATACTCTTCAAACTCGCCATAGAGCTGCTTCAGCTCTATGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGGTCATCTTCTATAGAAAAACTGTAAAAAAGTTTAAAACAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCACTTCTTCTTCCCAAGGACATTCGACTCCTGCAGGCTTCTCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTGCGTTGCAGGGTGGTAAAAAACGAGCCATTCTGAGCCCTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGTTGTCGCAGGTCCATAGGACGGCTGATTCCCAACCGTGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCTCTCTTCTCGCTCCTGCAACGTAATGCCGTTAAGGTGTTCGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTTGGTCCAAGGGAACACGAAATACTTAAGTCTTCCTCAATAACGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTCAATGAGCCAATCTATTATTTCTTGGCGGGAGAGCATCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACTAATTACCCTCAACGACCAGGACTCCGCCGTCCTGGTCAAACGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCAGTTATGTCCACAACTTCTTTGTCTATCTTGTCTATCAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCCAAGGCTAGCCCAAGGGCCTTTCTATTCTTCGTATGCATGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACCGACTTCGTCTCTCATGGAAAGCTTATGCTTTCCAACAAACCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAGAGATATTGTCCTGTCCAGCCAGGACGGTGTCGTCCTGGAGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAAAACACCATATTGTTTATTTATAAATAAATTAACTCGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACATGCCGACACAACCAAAACAAATTCATCGGTGGCAATCTTGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACACCTCCTTTTATTTTTGATTTATTCCCGGAAGTTTCCAGAGGGTGAGAAAACCTTGCCTGATTAAGAAGGCAAAGGGAC

>NC_015681|5|4|1410352-1412622|PILER-CR
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTATCAGAGTAATATGTATACTGTTTTCTGAAGCCAACT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACATAAGCCCGCTCTCTTCGACCTCCTCGAGATACTCCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGCCTCTCCTTCCTCAATCCAGAGTTCGAGGCTTCCGCCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AATTTAACTTTTGCCAAATACTCTTTTTTCTTTTCCATC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCACTCAATGAGAGCGGATGGCTTGTCGGAGACGACTTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAATGAGAGCTGGTAATTTAACAAATAAATTATTTCTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCTGGCACAGTCGGGACAAACGTTCATATAGTGACCTATTAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTCGTGCCCGATGAACAAAACCACACCTCAATAGAGCCACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCGTAGTTACGGGCTGCTATAGCCAGAGTACTCGGGTTTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTACTTCCATTTCTTTACCTCCCTTTTCTTATTTTACT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GGACTCACAAAGAGAGGTCCTTTGAAAATCCTCGGCCCCGTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTTAAGAAAGGAAGCTGTTGCTTCTTTTATTTTTTCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTCTTTTCCATCTCTCTTTACCTCCCTTTTCTTATTTTACTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTTTTCCATAGCGCTGCTCCCCTTTTTTTGCTTAACTTACTA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTATAAAATAAAATTGAAGCTCTGCCTTTCCATTTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCCGCTCTCCCTTCTTTCCTTGTCCTTACGCTACATTGTAAG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTGGAGACACTCGGGGCATGCATAACTAAAAGAAAGGT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTTGATTACTATTAATACTATTTTTTTCATTTTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TATAACCATTGTTTTCTAATACCTTATTAATGACACTAG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTCCTGAGGCCTTCGGTAAGAACAAGAAACAAAAAAAGC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GAGACGACCTTTACGGTCGTCCCGGATACATCAAACCAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTCTCACAAAGAGAGGCCCTTTGAAAATCCTCGGCCCTGT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CAGACAAGCTGGCTCTCAAAATACGCCGTTTGGCGGAGAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTTAGCAGGCCTCCAGGCCTTGTCAGGAAACCTCAGGACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAACATCAGATAAATAACACTTCACTATGTATTCCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CACACAAGACCATCATTCATTCCAGCCACATAGGTCTGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGGCAATAGGTAAGAGTCCAGTTGCTGTGGCCAGTAAGCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAACCACAACACAACTGTACTGTTCCTTAGCCTCTCAATAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACTATCAGCCAATTTAACTTTTGCCAAATACTCTTTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAACTGTGTATTCCACATTGTCTTCTAACCTAACTGCTGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTAGCATGGTGATTTACTCGAAATATTACTTTGCCCAGCCAGGAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TATACTCTTCAAACTCGCCATAGAGCTGCTTCAGCTCTATG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTCATCTTCTATAGAAAAACTGTAAAAAAGTTTAAAACA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CACTTCTTCTTCCCAAGGACATTCGACTCCTGCAGGCTTCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGCGTTGCAGGGTGGTAAAAAACGAGCCATTCTGAGCCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTTGTCGCAGGTCCATAGGACGGCTGATTCCCAACCGTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTCTCTTCTCGCTCCTGCAACGTAATGCCGTTAAGGTGTTCG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTGGTCCAAGGGAACACGAAATACTTAAGTCTTCCTCAATAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAATGAGCCAATCTATTATTTCTTGGCGGGAGAGCATC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TAATTACCCTCAACGACCAGGACTCCGCCGTCCTGGTCAAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAGTTATGTCCACAACTTCTTTGTCTATCTTGTCTATCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAAGGCTAGCCCAAGGGCCTTTCTATTCTTCGTATGCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CGACTTCGTCTCTCATGGAAAGCTTATGCTTTCCAACAAACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGAGATATTGTCCTGTCCAGCCAGGACGGTGTCGTCCTGGA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAAACACCATATTGTTTATTTATAAATAAATTAACTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGCCGACACAACCAAAACAAATTCATCGGTGGCAATCTT


>NC_015681|5|5|1410352-1414024|CRISPRCasFinder
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTATCAGAGTAATATGTATACTGTTTTCTGAAGCCAACT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACATAAGCCCGCTCTCTTCGACCTCCTCGAGATACTCCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGCCTCTCCTTCCTCAATCCAGAGTTCGAGGCTTCCGCCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AATTTAACTTTTGCCAAATACTCTTTTTTCTTTTCCATC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCACTCAATGAGAGCGGATGGCTTGTCGGAGACGACTTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAATGAGAGCTGGTAATTTAACAAATAAATTATTTCTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCTGGCACAGTCGGGACAAACGTTCATATAGTGACCTATTAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTCGTGCCCGATGAACAAAACCACACCTCAATAGAGCCACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCGTAGTTACGGGCTGCTATAGCCAGAGTACTCGGGTTTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTACTTCCATTTCTTTACCTCCCTTTTCTTATTTTACT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GGACTCACAAAGAGAGGTCCTTTGAAAATCCTCGGCCCCGTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTTAAGAAAGGAAGCTGTTGCTTCTTTTATTTTTTCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTCTTTTCCATCTCTCTTTACCTCCCTTTTCTTATTTTACTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTTTTCCATAGCGCTGCTCCCCTTTTTTTGCTTAACTTACTA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTATAAAATAAAATTGAAGCTCTGCCTTTCCATTTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCCGCTCTCCCTTCTTTCCTTGTCCTTACGCTACATTGTAAG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTGGAGACACTCGGGGCATGCATAACTAAAAGAAAGGT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTTGATTACTATTAATACTATTTTTTTCATTTTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TATAACCATTGTTTTCTAATACCTTATTAATGACACTAG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTCCTGAGGCCTTCGGTAAGAACAAGAAACAAAAAAAGC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GAGACGACCTTTACGGTCGTCCCGGATACATCAAACCAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTCTCACAAAGAGAGGCCCTTTGAAAATCCTCGGCCCTGT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CAGACAAGCTGGCTCTCAAAATACGCCGTTTGGCGGAGAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTTAGCAGGCCTCCAGGCCTTGTCAGGAAACCTCAGGACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAACATCAGATAAATAACACTTCACTATGTATTCCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CACACAAGACCATCATTCATTCCAGCCACATAGGTCTGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGGCAATAGGTAAGAGTCCAGTTGCTGTGGCCAGTAAGCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAACCACAACACAACTGTACTGTTCCTTAGCCTCTCAATAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACTATCAGCCAATTTAACTTTTGCCAAATACTCTTTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AACTGTGTATTCCACATTGTCTTCTAACCTAACTGCTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTAGCATGGTGATTTACTCGAAATATTACTTTGCCCAGCCAGGAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TATACTCTTCAAACTCGCCATAGAGCTGCTTCAGCTCTATG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTCATCTTCTATAGAAAAACTGTAAAAAAGTTTAAAACA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CACTTCTTCTTCCCAAGGACATTCGACTCCTGCAGGCTTCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGCGTTGCAGGGTGGTAAAAAACGAGCCATTCTGAGCCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTTGTCGCAGGTCCATAGGACGGCTGATTCCCAACCGTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTCTCTTCTCGCTCCTGCAACGTAATGCCGTTAAGGTGTTCG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTGGTCCAAGGGAACACGAAATACTTAAGTCTTCCTCAATAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAATGAGCCAATCTATTATTTCTTGGCGGGAGAGCATC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TAATTACCCTCAACGACCAGGACTCCGCCGTCCTGGTCAAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAGTTATGTCCACAACTTCTTTGTCTATCTTGTCTATCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAAGGCTAGCCCAAGGGCCTTTCTATTCTTCGTATGCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CGACTTCGTCTCTCATGGAAAGCTTATGCTTTCCAACAAACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGAGATATTGTCCTGTCCAGCCAGGACGGTGTCGTCCTGGA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAAACACCATATTGTTTATTTATAAATAAATTAACTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGCCGACACAACCAAAACAAATTCATCGGTGGCAATCTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACCTCCTTTTATTTTTGATTTATTCCCGGAAGTTTCCAGAGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCAAAGGGAC

>NC_015681|5|3|1410352-1414024|CRT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTATCAGAGTAATATGTATACTGTTTTCTGAAGCCAACT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACATAAGCCCGCTCTCTTCGACCTCCTCGAGATACTCCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGCCTCTCCTTCCTCAATCCAGAGTTCGAGGCTTCCGCCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AATTTAACTTTTGCCAAATACTCTTTTTTCTTTTCCATC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCACTCAATGAGAGCGGATGGCTTGTCGGAGACGACTTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAATGAGAGCTGGTAATTTAACAAATAAATTATTTCTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCTGGCACAGTCGGGACAAACGTTCATATAGTGACCTATTAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTCGTGCCCGATGAACAAAACCACACCTCAATAGAGCCACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCGTAGTTACGGGCTGCTATAGCCAGAGTACTCGGGTTTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTACTTCCATTTCTTTACCTCCCTTTTCTTATTTTACT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GGACTCACAAAGAGAGGTCCTTTGAAAATCCTCGGCCCCGTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTTAAGAAAGGAAGCTGTTGCTTCTTTTATTTTTTCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTCTTTTCCATCTCTCTTTACCTCCCTTTTCTTATTTTACTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTTTTCCATAGCGCTGCTCCCCTTTTTTTGCTTAACTTACTA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTATAAAATAAAATTGAAGCTCTGCCTTTCCATTTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCCGCTCTCCCTTCTTTCCTTGTCCTTACGCTACATTGTAAG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTGGAGACACTCGGGGCATGCATAACTAAAAGAAAGGT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTTGATTACTATTAATACTATTTTTTTCATTTTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TATAACCATTGTTTTCTAATACCTTATTAATGACACTAG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTCCTGAGGCCTTCGGTAAGAACAAGAAACAAAAAAAGC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GAGACGACCTTTACGGTCGTCCCGGATACATCAAACCAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTCTCACAAAGAGAGGCCCTTTGAAAATCCTCGGCCCTGT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CAGACAAGCTGGCTCTCAAAATACGCCGTTTGGCGGAGAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTTAGCAGGCCTCCAGGCCTTGTCAGGAAACCTCAGGACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAACATCAGATAAATAACACTTCACTATGTATTCCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CACACAAGACCATCATTCATTCCAGCCACATAGGTCTGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGGCAATAGGTAAGAGTCCAGTTGCTGTGGCCAGTAAGCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAACCACAACACAACTGTACTGTTCCTTAGCCTCTCAATAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACTATCAGCCAATTTAACTTTTGCCAAATACTCTTTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AACTGTGTATTCCACATTGTCTTCTAACCTAACTGCTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTAGCATGGTGATTTACTCGAAATATTACTTTGCCCAGCCAGGAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TATACTCTTCAAACTCGCCATAGAGCTGCTTCAGCTCTATG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTCATCTTCTATAGAAAAACTGTAAAAAAGTTTAAAACA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CACTTCTTCTTCCCAAGGACATTCGACTCCTGCAGGCTTCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGCGTTGCAGGGTGGTAAAAAACGAGCCATTCTGAGCCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTTGTCGCAGGTCCATAGGACGGCTGATTCCCAACCGTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTCTCTTCTCGCTCCTGCAACGTAATGCCGTTAAGGTGTTCG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTGGTCCAAGGGAACACGAAATACTTAAGTCTTCCTCAATAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAATGAGCCAATCTATTATTTCTTGGCGGGAGAGCATC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TAATTACCCTCAACGACCAGGACTCCGCCGTCCTGGTCAAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAGTTATGTCCACAACTTCTTTGTCTATCTTGTCTATCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAAGGCTAGCCCAAGGGCCTTTCTATTCTTCGTATGCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CGACTTCGTCTCTCATGGAAAGCTTATGCTTTCCAACAAACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGAGATATTGTCCTGTCCAGCCAGGACGGTGTCGTCCTGGA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAAACACCATATTGTTTATTTATAAATAAATTAACTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGCCGACACAACCAAAACAAATTCATCGGTGGCAATCTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACCTCCTTTTATTTTTGATTTATTCCCGGAAGTTTCCAGAGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCAAAGGGAC

>NC_015681|5|5|1412661-1413945|PILER-CR
	ATTATCAGAGTAATATGTATACTGTTTTCTGAAGCCAACT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACATAAGCCCGCTCTCTTCGACCTCCTCGAGATACTCCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGCCTCTCCTTCCTCAATCCAGAGTTCGAGGCTTCCGCCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AATTTAACTTTTGCCAAATACTCTTTTTTCTTTTCCATC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCACTCAATGAGAGCGGATGGCTTGTCGGAGACGACTTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAATGAGAGCTGGTAATTTAACAAATAAATTATTTCTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCTGGCACAGTCGGGACAAACGTTCATATAGTGACCTATTAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTCGTGCCCGATGAACAAAACCACACCTCAATAGAGCCACCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCGTAGTTACGGGCTGCTATAGCCAGAGTACTCGGGTTTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATTACTTCCATTTCTTTACCTCCCTTTTCTTATTTTACT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GGACTCACAAAGAGAGGTCCTTTGAAAATCCTCGGCCCCGTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTTAAGAAAGGAAGCTGTTGCTTCTTTTATTTTTTCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTCTTTTCCATCTCTCTTTACCTCCCTTTTCTTATTTTACTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTTTTCCATAGCGCTGCTCCCCTTTTTTTGCTTAACTTACTA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTATAAAATAAAATTGAAGCTCTGCCTTTCCATTTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCCCGCTCTCCCTTCTTTCCTTGTCCTTACGCTACATTGTAAG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTGGAGACACTCGGGGCATGCATAACTAAAAGAAAGGT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTTGATTACTATTAATACTATTTTTTTCATTTTTTCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TATAACCATTGTTTTCTAATACCTTATTAATGACACTAG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTCCTGAGGCCTTCGGTAAGAACAAGAAACAAAAAAAGC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GAGACGACCTTTACGGTCGTCCCGGATACATCAAACCAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTCTCACAAAGAGAGGCCCTTTGAAAATCCTCGGCCCTGT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CAGACAAGCTGGCTCTCAAAATACGCCGTTTGGCGGAGAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCTTAGCAGGCCTCCAGGCCTTGTCAGGAAACCTCAGGACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAACATCAGATAAATAACACTTCACTATGTATTCCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CACACAAGACCATCATTCATTCCAGCCACATAGGTCTGG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGGCAATAGGTAAGAGTCCAGTTGCTGTGGCCAGTAAGCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAACCACAACACAACTGTACTGTTCCTTAGCCTCTCAATAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ACTATCAGCCAATTTAACTTTTGCCAAATACTCTTTTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGACAACTGTGTATTCCACATTGTCTTCTAACCTAACTGCTGGTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	GTAGCATGGTGATTTACTCGAAATATTACTTTGCCCAGCCAGGAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TATACTCTTCAAACTCGCCATAGAGCTGCTTCAGCTCTATG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGGTCATCTTCTATAGAAAAACTGTAAAAAAGTTTAAAACA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CACTTCTTCTTCCCAAGGACATTCGACTCCTGCAGGCTTCTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TGCGTTGCAGGGTGGTAAAAAACGAGCCATTCTGAGCCCT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGTTGTCGCAGGTCCATAGGACGGCTGATTCCCAACCGTG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCTCTCTTCTCGCTCCTGCAACGTAATGCCGTTAAGGTGTTCG
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TTGGTCCAAGGGAACACGAAATACTTAAGTCTTCCTCAATAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TCAATGAGCCAATCTATTATTTCTTGGCGGGAGAGCATC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	TAATTACCCTCAACGACCAGGACTCCGCCGTCCTGGTCAAAC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAGTTATGTCCACAACTTCTTTGTCTATCTTGTCTATCA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CCAAGGCTAGCCCAAGGGCCTTTCTATTCTTCGTATGCAT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	CGACTTCGTCTCTCATGGAAAGCTTATGCTTTCCAACAAACC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AGAGATATTGTCCTGTCCAGCCAGGACGGTGTCGTCCTGGA
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	AAAACACCATATTGTTTATTTATAAATAAATTAACTC
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC	ATGCCGACACAACCAAAACAAATTCATCGGTGGCAATCTT
GTGAGAAAACCTTGCCTGATTAAGAAGGCATTACGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015681.1|WP_013907956.1|1408618_1409716_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_015681.1|WP_013907949.1|1401943_1402867_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_015681.1|WP_013907962.1|1419176_1420121_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0091_cas6_CAS-I:CAS-III	gnl|CDD|337605
NC_015681.1|WP_013907948.1|1400688_1401954_-|TIGR02710-family-CRISPR-associated-protein	csx1	cd09747_csx1_CAS-III	gnl|CDD|187878
NC_015681.1|WP_013907961.1|1418937_1419228_+|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|187856
NC_015681.1|WP_013907950.1|1402859_1403285_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl|CDD|378242
NC_015681.1|WP_013907966.1|1422796_1426975_-|CoA-activase	unknown	unknown	gnl|CDD|224835
NC_015681.1|WP_013907958.1|1415917_1416205_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_015681.1|WP_013907959.1|1416201_1417917_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
NC_015681.1|WP_013907963.1|1420172_1420937_-|ATP-dependent-sacrificial-sulfur-transferase-LarE	unknown	unknown	gnl|CDD|238948
NC_015681.1|WP_013907960.1|1417916_1418933_+|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NC_015681.1|WP_013907964.1|1420936_1422121_-|homocysteine-biosynthesis-protein	unknown	unknown	gnl|CDD|376627
NC_015681.1|WP_013907947.1|1399289_1400507_-|ATP-binding-protein	unknown	unknown	gnl|CDD|379306
NC_015681.1|WP_013907954.1|1404794_1405835_-|CRISPR-associated-protein,-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|187879
NC_015681.1|WP_013907953.1|1404542_1404782_-|DUF433-domain-containing-protein	unknown	unknown	gnl|CDD|225291
NC_015681.1|WP_013907957.1|1414452_1415682_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
NC_015681.1|WP_013907951.1|1403281_1404169_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl|CDD|274210
NC_015681.1|WP_013907965.1|1422129_1422729_-|CBS-domain-containing-protein	unknown	unknown	gnl|CDD|341361
NC_015681.1|WP_013907955.1|1405821_1408632_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl|CDD|187810
NC_015681.1|WP_013907952.1|1404180_1404546_-|DUF5615-family-PIN-like-protein	unknown	unknown	gnl|CDD|375906

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015681.1|WP_013907956.1|1408618_1409716_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	1.4e-21	71.7	0.0
NC_015681.1|WP_013907949.1|1401943_1402867_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	cd09661_cmr6gr7_CAS-III-B	5.4e-44	145.1	0.0
NC_015681.1|WP_013907960.1|1417916_1418933_+|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	1.2e-108	357.6	0.0
NC_015681.1|WP_013907962.1|1419176_1420121_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0091_cas6_CAS-I:CAS-III	1.3e-106	351.2	0.0
NC_015681.1|WP_013907954.1|1404794_1405835_-|CRISPR-associated-protein,-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.3e-42	141.4	0.0
NC_015681.1|WP_013907948.1|1400688_1401954_-|TIGR02710-family-CRISPR-associated-protein	csx1	cd09747_csx1_CAS-III	6.1e-73	240.5	1.5
NC_015681.1|WP_013907958.1|1415917_1416205_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1e-27	90.9	0.0
NC_015681.1|WP_013907950.1|1402859_1403285_-|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	7.5e-27	88.9	2.4
NC_015681.1|WP_013907951.1|1403281_1404169_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	4.6e-66	218.0	0.0
NC_015681.1|WP_013907955.1|1405821_1408632_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	1e-93	309.5	0.1
NC_015681.1|WP_013907961.1|1418937_1419228_+|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	2.4e-28	93.1	0.6

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015681.1|WP_013907956.1|1408618_1409716_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.90999e-14
NC_015681.1|WP_013907949.1|1401943_1402867_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.33612e-40
NC_015681.1|WP_013907962.1|1419176_1420121_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl|CDD|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	1.90543e-09
NC_015681.1|WP_013907948.1|1400688_1401954_-|TIGR02710-family-CRISPR-associated-protein	gnl|CDD|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	4.91889e-62
NC_015681.1|WP_013907961.1|1418937_1419228_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.18814e-27
NC_015681.1|WP_013907950.1|1402859_1403285_-|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl|CDD|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	1.14543e-30
NC_015681.1|WP_013907966.1|1422796_1426975_-|CoA-activase	gnl|CDD|224835	COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism].	9.30796e-100
NC_015681.1|WP_013907958.1|1415917_1416205_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.74953e-28
NC_015681.1|WP_013907959.1|1416201_1417917_+|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.40522e-09
NC_015681.1|WP_013907963.1|1420172_1420937_-|ATP-dependent-sacrificial-sulfur-transferase-LarE	gnl|CDD|238948	cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.	1.06205e-71
NC_015681.1|WP_013907960.1|1417916_1418933_+|CRISPR-associated-endonuclease-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	7.3443e-127
NC_015681.1|WP_013907964.1|1420936_1422121_-|homocysteine-biosynthesis-protein	gnl|CDD|376627	pfam01837, HcyBio, Homocysteine biosynthesis enzyme, sulfur-incorporation. This presumed domain is about is about 360 residues long. The function of this domain is unknown. It is found in some proteins that have two C-terminal CBS pfam00571 domains. There are also proteins that contain two inserted Fe4S domains near the C-terminal end of the domain. The Methanothermobacter thermautotrophicus gene MTH_855 product has been misannotated as an inosine monophosphate dehydrogenase based on the similarity to the CBS domains. Based on genetic analyses in the methanogen Methanosarcina acetivorans, this family is a key component of the metabolic network for sulfide assimilation and trafficking in methanogens. It is essential to a novel, O-acetylhomoserine sulfhydrylase-independent pathway for homocysteine biosynthesis, and may catalyze sulfur incorporation into the side chain of an as yet unidentified amino acid precursor. The DUF39-CBS and DUF39-ferredoxin architectures repeatedly occur together in the genomes of methanogenic Archaea, suggesting they may be of diverged function. This is consistent with a phylogenetic reconstruction of the DUF39 family, which clearly distinguishes the CBS-associated and ferredoxin-associated DUF39s.	0
NC_015681.1|WP_013907947.1|1399289_1400507_-|ATP-binding-protein	gnl|CDD|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	2.25818e-55
NC_015681.1|WP_013907954.1|1404794_1405835_-|CRISPR-associated-protein,-Cmr3	gnl|CDD|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.09527e-30
NC_015681.1|WP_013907953.1|1404542_1404782_-|DUF433-domain-containing-protein	gnl|CDD|225291	COG2442, COG2442, Uncharacterized conserved protein [Function unknown].	8.29611e-24
NC_015681.1|WP_013907957.1|1414452_1415682_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	2.50786e-51
NC_015681.1|WP_013907951.1|1403281_1404169_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	5.98141e-69
NC_015681.1|WP_013907965.1|1422129_1422729_-|CBS-domain-containing-protein	gnl|CDD|341361	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain. The putative Acetoin Utilization Protein (Acub) from Vibrio Cholerae contains a CBS pair domain. The acetoin utilization protein plays a role in growth and sporulation on acetoin or butanediol for use as a carbon source. Acetoin is an important physiological metabolite excreted by many microorganisms. It is used as an external energy store by a number of fermentive bacteria. Acetoin is produced by the decarboxylation of alpha-acetolactate. Once superior carbon sources are exhausted, and the culture enters stationary phase, acetoin can be utilised in order to maintain the culture density. The conversion of acetoin into acetyl-CoA or 2,3-butanediol is catalysed by the acetoin dehydrogenase complex and acetoin reductase/2,3-butanediol dehydrogenase, respectively. Acetoin utilization proteins, acetylpolyamine amidohydrolases, and histone deacetylases are members of an ancient protein superfamily.This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT (aspartate kinase/chorismate mutase/TyrA) domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.85915e-48
NC_015681.1|WP_013907955.1|1405821_1408632_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	9.15491e-69
NC_015681.1|WP_013907952.1|1404180_1404546_-|DUF5615-family-PIN-like-protein	gnl|CDD|375906	pfam18480, DUF5615, Domain of unknown function (DUF5615). This is a domain of unknown function found in potential toxin-antitoxin system component.	5.18491e-22

Protein sequences

>NC_015681.1|WP_013907956.1|1408618_1409716_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MNKQDRLENLRQRFEKLVTVKFHCRIITPMFLGDAEQKASLRPAPFKGLLRYWWRVAAGRNLKDPVELLTEETKIFGGGGEKAQKSLVTVELEGKPKIITDQRLPRVRNVFHPEAGRPVNPLLYLGYGPVTWDKGSKYTRFYLAPKETFTLKLTLPASFLEDEYFKTALLYLCAFGAIGSRSRNGWGSFQVEKIDPPITAKIKYSLWGKGLFQKDYPFTLAAQKEENLIKALVWKTKNLRKNWEEVMKELAEVYISVRTSLSPDGTKDIDERHLLGFPLTNHYAFDAPNWGKNARHASPLRLFVRKKKTGYQGFVLHLPFGISKEMRKNAARKEFFTPDKQFKIWQKVHQRLDQAMQRANINDCL
>NC_015681.1|WP_013907955.1|1405821_1408632_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MTACKIRKDENYWREKLAAFLHDPPDKALSIWGHVKRAEKLREKIYVSADENLLSRADQVASGLDRTFLPERESGGEIKFPEYPVITHPTGKTSPFNLGPFSNFNLQNILSQIEILIAQDSNNFPKHYYSFALFHYFRHVLPWRLAQTNVGNLAWHWWGLPADTRLPDHSIWQHCALTSALYSCYRESPDTQASLMVFSLTPVQDFIARSRKLRDYWTASLILSWLASEGLWVVISRYGSDHIIYPAPIGQALIEAKLDKTCGFSHWTARYHLEARAATLPNKFLFLSPAGQEKEIAELIEKHIEESWKELAKKVKDLVKKECFSGVSEACLKSFDYIFDRQATNFWEFHWTAVSLLDEHLLNQNRPFLPKNIVQKLETYLEEARQINFPYLSFTEKFFYPASYDFAGRGLAAEKLSPREIRPEEPGIKCHLHTDFEALRFSCLECKNDGKSCELNSGRGPDSNPRPSRDPCWQKIRKEFSKSEFKETERLSALGLIKRLASRAVDKNHPLYSFFQRAESFPSTTEIALKDWLERAEKDIAELGLSHKDIAEILHQKETNNKYEIKDISKQEQEIHKKVLKLLKRRKEKNDEPTTYDRYYAILVMDGDRMGRLLSGGFAARWRDVLHPEIIRRLENGEIGSNFKTFWLDFLNCKRLISPAVHAAISKALSDFALYTVPSIVARYRGRLIYAGGDDVCAVFPISSALKAAREIAHAYNWAFVRYGQRRTVVKRDGKIVDNEFLTGEVSKAEDLLSQDLLLLHLGPGEEISISGGLLFIHHKWPLRAALERAHSLLEIAKDPGRRALALELQRRAGEQRTFVAGFKEKISFNENEVSVWDAFEALNKAFASRKLSSSFAYRPKELAEGLEVLSDNPDEMARFILAQIKTGKKENSSLYEEISSWVATVLLGDRRGTLAFEALEIARFLGEAWRRHGFN
>NC_015681.1|WP_013907954.1|1404794_1405835_-|CRISPR-associated-protein,-Cmr3
MGLIEQWLEIKPLDTLFFRGGEPMEAGETHEAGRPIFPPAPDTIIGALRTAILGQKGIDLAVVKKLGKEQDLDLENLPFWGSPARPGFRIAGPLLKANGIVLFPAPANWFYSQPGWEPTRFVIYEARPDKKTVSVKLPFNKALWVENPPQDMERLSLGFWVNRKALENQEKFSLEVAESITDISEEKALAVPVELLLKTEQRVGIARDNRLRMVRTGHLYATHHLRLAKGVSLVVGLDKALCPSHLNEKGLFQFGGEGRLVRYHLIKDKPQLPQKNNGRWLAVSLLSFSRARSASNLAGPYASGKLLRVGGFDLNSGFHKPARTFFPVGTVFFADKDPGLCELIPF
>NC_015681.1|WP_013907953.1|1404542_1404782_-|DUF433-domain-containing-protein
MKFDRITFDPLVMGGKPCIRGMRITVGMIVGLIASGVNKEEILKLYPYLEPEDIDQALAYAAWRAEEIEISEVESKKVA
>NC_015681.1|WP_013907952.1|1404180_1404546_-|DUF5615-family-PIN-like-protein
MKILVDVNLSPQLALLIKEKNFEALHWSEIGNLSAKDEEIFNWAKKNKFIVLTHDLDFGAILAATEADFPSVIQVRTLDVRPHILLPKILYLLNTYEKYLTQGALIVLDERKTRIRILPLN
>NC_015681.1|WP_013907951.1|1403281_1404169_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MLWGDEKRLCLLYALTPIHAGAGQALKAVDLPIQRERHTAWPMVQASGVKGTLRDWCEKAWENNGIDKDLVKYIFGRAGEEGGSWAGAVTVTDARLLLFPVRSNVAPFVHVTCPAVLKRLREELSLLGLQDKLSENYSVGEEEYIVLKGGISGEIVLEDMVVKPKQTQEKTNWLPNNIPEAEKILLVSDEVFGYLVRTATEVQAHIAIKDDTGTAEDGSLRYQEYLPADTVLYFLAFFSDERSKRDQFKSAQEIAQLVTEHGVTTHLQIGGDFTLGKGICKVKWIAPKDSQGGAK
>NC_015681.1|WP_013907950.1|1402859_1403285_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MKTKAQERAKFAYEKVKEALEILGKGSAKEFSSFVSGLPAMILQNGLGHTLCFLLAKAANQKESKYKKTGKEAKYWLAFEALAEWLKKQDLLNYDPDNPAQTIHELTRKRALEYLALQEEALRFLEWFKVMTKMFVEEKSA
>NC_015681.1|WP_013907949.1|1401943_1402867_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MPDWGKKPKHGEQGRKRKQSIPKYFSPLSADHVGIIQNLGDSFNFGLYFNKWLFTEWKTRNNFKFPEYQFQASGQAKIVLNYYEKASKGVKSLIAKKQKEIENICKAFQMLGYERVSKTYTLQTSLIIGLGNAHPTERGFTFHWTLGIPYLPAESIKGVVRLAYLVNKAQEEPDFFEHWAEEDERFWEYLAKPFGREEKDGKRARRGKVIFFDALPVEPPQLTLEITTCHYSDYYGGKRGPTEDQNPNPLPFLAVATGAKFRFVLLMHESLGDKAKEKLLKAFHAALAEHGFGAKTALGHGRFVYGS
>NC_015681.1|WP_013907948.1|1400688_1401954_-|TIGR02710-family-CRISPR-associated-protein
MALKKGLLISIGTGVGDTPESILNAISLSISERNPNFIAFIVSDKSKKNAQIVCENLGIDKKHYNFFEISNPNDLDKCVKKTNEAVDWLLKQNLSSHQIIADFTSGTKPMSSAIVLVAFQRNIGSLSYVQGERIKGIVKKGTEQVMSFKPIISKIYSNINEAYKSLKIYQFDTASSIITECQEFRDLLSENRKNELDYLENIIKAYHSWDLFKHHEAEKYFSKAETAFKKLEKNEFISLFPEKKTLKSLKILGNFIYQNKKDKIIIADLLANAKRRIKEGKYDDAMARLYRIFELVGQTILFSKYGLNSSDLDLDKIRNLLGSKFEKWTSLLQRDPTDNKVKIGARKVYELLNDLGHNVRKELESFKTLLAQRNNSILAHGLKPIEKETVEKLWEKIFDLCQKHFDNFEKTYQQLIFSWDQ
>NC_015681.1|WP_013907947.1|1399289_1400507_-|ATP-binding-protein
MYIPRLLEEVFERASGFFPVILLTGARQVGKTTLIKHLLEKEGLKRNYVSLDEFGARALAIEDPDLFLERYPPPVAIDEVQYAPQLFERIKVLVDQKRKPGAFWLTGSQYFSLMKGISESLAGRVGILNLLGLSQEEEFKTLRPGPFLPEIGFKNTLIPIRPLEVFERLVRGCFPALATSREIHLEIFYSSYLQTYIERDIRQISNIAKLIEFERFLKLCAARIGQLLNYSDLARDAGISVSTAKEWINTLVASNQLFLLSPYYRNISKRQIKTPKLYFWDTGLACYLAGWRDPKTAFEGAMSGALFENYVLVEILKSYFNRGKEPAIYFWRTKDGQEVDLLIEEQGKLYPIEIKLSMRPKKDMLRGVYALKKYFKNIGSGALVCLVEKPFPLGKNFFALPVTAI
>NC_015681.1|WP_013907957.1|1414452_1415682_-|ATP-binding-protein
MYKKRLLTERIKRALSFFPVVAIVGARQTGKTTLVKHEFPKRKYFSLDSPEVRALLESDPHGFISAQEDPLTLDEVQKVPAIFESLKSLVDEQREPGRFLLTSSANFLLLKKVSETLAGRIAIFELPGFAVTEAGNYPPPEFLKQCLRENSLPSAPEKAYAKPKLETLICRGSLPPAVLAPDDDLRRLWFENYIATYLERDLRELSQVASLGDFRRLMGLAALRTAQVLNVSELARDAGLAVSTTRNYLQLLEISFQIRRLPPYFAHLGKRLTKAPKLLFRDTGLALTLMAIATKDNELATHPCYPALVETFLVEEIAKLLAYFEPQARLFYYRTHAGAEVDLVIEIGEKLIPIEIKASATVSLKKMAGLKQFLKDFKEKAPFGLVVYQGKEFVKIAPNIALVPWKYII
>NC_015681.1|WP_013907958.1|1415917_1416205_+|CRISPR-associated-endonuclease-Cas2
MKATHYLVSYDIADDKRLRKVARIMEDFGERVLYSVFECHLTPVQLEALRRSVEPILDPLEDSVRYYPICERCEKHIEHLGRDKKFLRRKEFEIL
>NC_015681.1|WP_013907959.1|1416201_1417917_+|tetratricopeptide-repeat-protein
MNHLFTAEELLARGEEEKARNLVLRYRLWPGQRASEYLRWGALCEDLALPKQAMECYRKALEVSRDYPQAIWALAKLCYELGDLDAAKRLTRRFLQKEPDNSSARELLARIYQELGEVGSYAVITQEKDEKPHGPRYFPPSLGKKDLEPFDIFLEGRRAHGELILSQNTGSPMFLYREAALNLDELKEHLEGKRYFAVYPIDEDKRTRVAFISIQIPERERARHARLKSWLYLKSQIVKDIALSAYKRVNQENLPAALEAVSPYYFRLWFFFAEPIHFLWAKRFLKALTNKLPYPEEGIIYRDWNLTRPVGLGWREQAVFLPLGLNPVNRTRAMFMDEYGEPQPEQLTFFKKLRHLTFSEIKTFCRGGELRFEVRTARLFDELLSRLCESCALIKALVQKAQAGRLLSREEKLALFLTIGLLDQDGRLLHEVLYPCPDYRFAKIERQRRGLPKNPVSCYKLRAWFPALAASLPCHCVFENAQERYPSPLLHVSPILVPPEEETLTLEYRTPKELARRYCFYLNEKERLERKIARAERELTEYLRARPGKKIKLSENAFLTYEDGKLKVEQN
>NC_015681.1|WP_013907960.1|1417916_1418933_+|CRISPR-associated-endonuclease-Cas1
MALYITEQGLKVRKEGQRLQFYKEKNVVREFRLDDLDEIYVFGRLNFSAAALQALLKHEIKVHFLTASGKYLGRLAPPRGKNVELRLAQFRAFDNEKRRLEIARAVIAGKIRNQKNFLRRQNRKLKNEKIGQAILKLRHKIKEAEDAQSLESLRGIEGQAAQVYFDVFGKLFQVEGLKFPGRIRRPPPDPINALLSLGYTLLFAQIWSVAESTGFDPYLGFLHVPEYGRPSLVLDLAEEWRPLIVDSLVVRLFNWKAVKPEDFTEEPWDDEEDFTSFKLTPDGLRKFLAKFRERLDEEALYAPLNKRLSYRYIMQQQVWHLARVLDGREEKYQAFSLE
>NC_015681.1|WP_013907961.1|1418937_1419228_+|CRISPR-associated-endonuclease-Cas2
MAKRQFYIVSYDISDEKRLREIHKFMKDFGEWKQKSVFECWLTPEAYENMKAGLKKLFKPREDRVRIYRLCKTCRERAFSYGWGELPEEFEEDVIL
>NC_015681.1|WP_013907962.1|1419176_1420121_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MQTLELPVIRVWLEFEAEEPESLPRYLFSPLRGVLGAQLKRLSCVARKFSTCRECPLNQHCAYGYIFETPRPEGAERLRLYPYLPHPFTISLPYPTPRENPFFLGLTLVGRAIQYFPHLVLALSAAGEKGLGRERVPLRLKAIKDHQNDELYQAGKLKPPSLLSEFLPYETEKLSLLFETPVTLRFEGKLVKPEQFEFHVFIRNLLRRLSALSFFHAEKELALDFKGLIEAAKQIKTTAKNLKSVEITRYSARTKQKMPLRGLIGRVSFEGNLTPFTPLLRAGELVHVGKNTSFGFGHYKITSSSNSSGSSPQP
>NC_015681.1|WP_013907963.1|1420172_1420937_-|ATP-dependent-sacrificial-sulfur-transferase-LarE
MEKIAQKLKCLEDIFKNLGGLAIALSGGLDSSVLLFLAANFLGRKKVLAYTITSPIINPEDLYHARLVASHLGIKHEFIAFDHLSLKAFQQNPKNRCYFCKKEMFKALITKSPYPVADGTQLDDLNDYRPGLKAISELKILSPLKEAGFPKEEIRLLAKKFRLPNYKREASPCLATRFLTGEPITRDSLLMIQKAENYLKGLGLSLVRVRKKANLAIIEVTLSEQEKVLGNQRSIVSFFKKLGFKKILYNLEGY
>NC_015681.1|WP_013907964.1|1420936_1422121_-|homocysteine-biosynthesis-protein
MGYKIKKTIDEINEKIKKGEAVVVTAEEMVKIVKENGPEEAAAQVDVVTTGTFAPMCSSGAFINFGHSKPAIKAYRVWLNGVPAYAGIAAVDIYIGATEPCEDDPLNKVYPGEFRYGGGHVIQDLVAGKTVYLKATSYGTHCYPRKYLEKEITLKDIPYALLFNPRNAYQNYNCAINLSDKTIYTYMGILRPRAQNANYATSGELSPLFKDPYLRTIGVGTRIFLGGGIGYVAWAGTQCNFKVPRTEKGAPLTPAATLMVYGDMKQMSAEWLVGVSILGYGCSLAVGLGVPIPILNEEIAAFAGLSDEELFTQVVDYAHDYPNGIKRSYGTVSYAELKSGTIRVLDKEIPTVPLSSIVKARKIAETLKNWIKEGKFLLSEPQAPFPGTELYPFR
>NC_015681.1|WP_013907965.1|1422129_1422729_-|CBS-domain-containing-protein
MRIKHWMIKDVITISPEATVEEALQLMKKHSIRHLPVVDGEDLVGLVTESSIRQYTLPSIKDSLPIKEVMILNPITVDAEATIDEAARLIHRHKIGGLPVIQAGKLVGIITVTDLLEAFIELMGILRSSSRIDVIPAKNKSFEEVLDIIKTHGGHVISVGMDIHPSGEKIYYVRLEKCPLDPIAAALEIAGHQVVSLVE
>NC_015681.1|WP_013907966.1|1422796_1426975_-|CoA-activase
MGYYVGLDVGSGTAKVAVLNEKREIIYHAYEKTHGQPVETAAKILADVEDKFGHELEGLTCTGTAGKTISKILSVAFVNEVMAHARAVEHFHPEARTIIDIGGEDSKLVFISHEDGKFRIKDFALNTLCAAGTGAFLEQQAARLGYTIQEFSKLALKAENIPRIAGRCTVFAKSDMIHLQQAAVPDHEIIAGLCFAIIRNLKSNLAKGKKVLPPIVFQGGVAANYGVRRAIKEIFNLKEGELIIPDYHFIMGAIGASLYGLDGRFTSPYQGSQVLKEYLKERKRTVKRLPKLGPYTVRTPKTQTLFPQSQGKLRVYLGIDVGSVSTKLVAINEEGKLIAKTYSLHHGKPLESVKKGLMALREKLPKNLEIEVLGVGTTGSGRYLVGDFVGADVIRNEITAQAKAAAAIDPSVDTIIEIGGQDSKYIRLENGTIVDFTMNKACAAGTGSFLEEQAVRLNVPIEEFGDYALKSEAPVEMGERCTVFMQSDLLHYQQQGLPKEDLIAGLCYAIVHNYLNKVVENRKIGNKVFYQGATAFNKGIVAAFEKVLGKEIIVPPHNEVTGAMGVALLALEESKGKSSFRGFDLSHIQYEISTFECQACPNRCEIRQVSIEGSKPYFYGGRCEKYEVEHRKPPASLPNLVNERTEKLLSYVVDKEDAPLGEIGLPRMLFYFERLPFFATLLQELGFKVVLSEPTNKKLVNEGCEIVAAETCFPVKVAHGHVLDLLKKGVKKIFVPYIVDLPADHPDLKSGKICPYVQSVAAALEASINLKEYGANILAPVFHFGTGGKVLEKQKGELANLLGVSQKQVKEAWKKAEAAQRDFDSWLKKRGEEVLANLDPEEVALVIVGRPYNAFDPGANLSIHNKIRSLGVLGIPVDMLPLHQIKDLDGLEGMYWRYGQRFLLAAHFIRNHPRLYPIFLTNFSCGPDSFIIHFFEELLGGKPYLEIEIDEHSADAGVVTRIEAFLDSIRGRNLAPQKPVKPYRKAVKPEDQRIIYLPYMSDHVYGLAAVFRACGVDARVLPESDEESLRLGRRYTSGKECYPAVLTTGDMLKMLKRPDFDPKRAAFFMPSGSGPCRFGQYNRLHRMILDQLGYEDVPIYSPTQNFQLYQELGMIGKDFTRLSWKALVCIDILDKFLREIRPYEINVGETEKVYKESLEKICQAIEERKDLLPVMEEIRGAFAAIPTENFGEKPVVGIVGEIYVRMNRFANEDLIKVLEEMGAEVWLPPVSEWFYYINYTSKRWAKRLRKFKQLVRLIIEHHVQVKDEHRFAALVQDILKTAEDPQVEEIIKLAQKYMNDEFEGEAILSVGKSLDYLRHGVNGIINVIPFTCMPGTIVAMVLKRVREENGLIPMLTVSCDGQRSMGTRMRLEAFMHQVREHFAEQEGRQKAA

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015681_3	3.1|609978|51|NC_015681|CRISPRCasFinder	609978-610028	51	NC_015681.1	596406-596456	0	1.0

1. spacer 3.1|609978|51|NC_015681|CRISPRCasFinder matches to position: 596406-596456, mismatch: 0, identity: 1.0

ctgatggtagatggccgatggtgaaagggactgcttcgtcgcctgcggctc	CRISPR spacer
ctgatggtagatggccgatggtgaaagggactgcttcgtcgcctgcggctc	Protospacer
***************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015681_4	4.7|918532|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT	918532-918568	37	NZ_CP010578	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence	195954-195990	7	0.811
NC_015681_4	4.7|918532|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT	918532-918568	37	NZ_CP010582	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB51, complete sequence	14790-14826	7	0.811
NC_015681_1	1.6|238703|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT	238703-238738	36	MN856100	Bacteriophage sp. isolate 2, complete genome	51751-51786	8	0.778
NC_015681_5	5.18|1411706|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT	1411706-1411743	38	NZ_CP053843	Campylobacter corcagiensis strain LMG 27932 plasmid pCCORG, complete sequence	31830-31867	9	0.763
NC_015681_1	1.31|240373|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT	240373-240409	37	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	169772-169808	10	0.73
NC_015681_4	4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT	918457-918494	38	NZ_LR735438	Staphylococcus epidermidis strain none isolate Se_BPH0723 plasmid 2	4227-4264	10	0.737
NC_015681_4	4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT	918457-918494	38	NZ_CP054008	Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3	7691-7728	10	0.737
NC_015681_4	4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT	918457-918494	38	NZ_CP054008	Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3	25161-25198	10	0.737
NC_015681_4	4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT	918457-918494	38	NZ_CP033731	Staphylococcus hominis strain FDAARGOS_575 plasmid unnamed1, complete sequence	25788-25825	10	0.737
NC_015681_4	4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT	918457-918494	38	NZ_CP016854	Staphylococcus aureus subsp. aureus strain 5118.N plasmid p5118.Nb, complete sequence	42235-42272	10	0.737
NC_015681_4	4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT	918457-918494	38	NZ_CP014130	Staphylococcus epidermidis strain FDAARGOS_161 plasmid unnamed1, complete sequence	16148-16185	10	0.737
NC_015681_5	5.18|1411706|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT	1411706-1411743	38	NZ_CP051210	Acinetobacter sp. NEB149 plasmid pMsp65, complete sequence	48376-48413	11	0.711

1. spacer 4.7|918532|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 7, identity: 0.811

-atgaattttttatcaattacatctgaaaaatcaacta	CRISPR spacer
aatgca-tctatatcaattatatctgaaaattcaactc	Protospacer
 *** * *.* *********.********* ****** 

2. spacer 4.7|918532|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010582 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB51, complete sequence) position: , mismatch: 7, identity: 0.811

-atgaattttttatcaattacatctgaaaaatcaacta	CRISPR spacer
aatgca-tctatatcaattatatctgaaaattcaactc	Protospacer
 *** * *.* *********.********* ****** 

3. spacer 1.6|238703|36|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to MN856100 (Bacteriophage sp. isolate 2, complete genome) position: , mismatch: 8, identity: 0.778

ttagatttaaaaattaaggtagcagttaaagaagga	CRISPR spacer
atagatttaaaagttaagttagcagtttattcagca	Protospacer
 ***********.***** ******** *   ** *

4. spacer 5.18|1411706|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053843 (Campylobacter corcagiensis strain LMG 27932 plasmid pCCORG, complete sequence) position: , mismatch: 9, identity: 0.763

--gttgattactattaatactatttttttcattttttcct	CRISPR spacer
aaagcaacta--attaatactatttttttcatttttgcca	Protospacer
  . ..*.**  ************************ ** 

5. spacer 1.31|240373|37|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 10, identity: 0.73

tttcttctatgctccgcattatttatcctccaataaa	CRISPR spacer
gtctattaattctcagcattatttatcctccaatcta	Protospacer
 *.. *. ** *** *******************  *

6. spacer 4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR735438 (Staphylococcus epidermidis strain none isolate Se_BPH0723 plasmid 2) position: , mismatch: 10, identity: 0.737

tttattgttactttttcatttttatttattggtaacca	CRISPR spacer
gttattgttactttttaatgtttatttagacataaaac	Protospacer
 *************** ** ********   .***   

7. spacer 4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054008 (Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3) position: , mismatch: 10, identity: 0.737

tttattgttactttttcatttttatttattggtaacca	CRISPR spacer
gttattgttactttttaatgtttatttagacataaaac	Protospacer
 *************** ** ********   .***   

8. spacer 4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054008 (Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3) position: , mismatch: 10, identity: 0.737

tttattgttactttttcatttttatttattggtaacca	CRISPR spacer
gttattgttactttttaatgtttatttagacataaaac	Protospacer
 *************** ** ********   .***   

9. spacer 4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033731 (Staphylococcus hominis strain FDAARGOS_575 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.737

tttattgttactttttcatttttatttattggtaacca	CRISPR spacer
gttattgttactttttaatgtttatttagacataaaac	Protospacer
 *************** ** ********   .***   

10. spacer 4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016854 (Staphylococcus aureus subsp. aureus strain 5118.N plasmid p5118.Nb, complete sequence) position: , mismatch: 10, identity: 0.737

tttattgttactttttcatttttatttattggtaacca	CRISPR spacer
gttattgttactttttaatgtttatttagacataaaac	Protospacer
 *************** ** ********   .***   

11. spacer 4.6|918457|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014130 (Staphylococcus epidermidis strain FDAARGOS_161 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.737

tttattgttactttttcatttttatttattggtaacca	CRISPR spacer
gttattgttactttttaatgtttatttagacataaaac	Protospacer
 *************** ** ********   .***   

12. spacer 5.18|1411706|38|NC_015681|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051210 (Acinetobacter sp. NEB149 plasmid pMsp65, complete sequence) position: , mismatch: 11, identity: 0.711

gttgattactattaatactatttttttcattttttcct	CRISPR spacer
cttgattactattaataccttttttttctaaatatgga	Protospacer
 *****************. ********    * *   

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1590705 : 1599308	10	Hokovirus(16.67%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_015681|1590705:1599308|DBSCAN-SWA
TATGTTTCTCAATCACTTAAAAATTTTTACTGGTAATGCCAATCCAGATCTTGCTCGCAAAATATCTGCCTACCTTAGTATTCCGTTAGGGCAGGCAGTGGTTAAGACTTTTAGTGACGGAGAGATTTACGTTGAAATTAAAGAAAACGTGCGTGGTTCAGATGCTTTTGTTATTCAGCCTACCTGCCCTCCGGTGAACGATAATCTTATGGAACTTCTTATTATGGTCGATGCTTTAAGACGGGCTTCGGCCAGAAGAATTACAGCGGTAATTCCATATTACGGCTATGCCCGCCAAGACCGAAAGGTTATCCCTCGTACTCCTATTACCGCTAAGCTGGTAGCCAATCTTATAACCGTGGCTGGTGCTCGCCGAGTCTTGACTATTGACCTTCACGCCGGGCAAATCCAGGGGTTTTTTGATATTCCGGTGGACCATCTTTACGCCGCTCCTGTGCTTATCCGCTATATAAAAGAAGAATTCAGGGGTAAAGATCTTGTTATTGTTTCTCCTGATGCTGGTGGAGTGGAAAGGGCCCGGGCTTATGCTAAAAGACTAGAAGCTGGCTTGGCTATTATTGACAAGCGTCGTCTCCGTCCAAATGAAAGTGAGGTTATGAACGTGGTTGGTGACGTAAAAGGGAAAGTAGCCATCATCTTAGATGACATGATTGATACCGCTGGCACCATGTGTAAAGCAGCTGAAGCCCTTTCTGAAAGAGGAGCCAAAGAAGTTCACGGTATGGCTACGCACCCTGTTCTTTCCGGGCCAGCCCTTGAAAGAATTAAAAAATCACCTATGAAATCCATAGTTGTTACGGATACCATTCCTCTCAGGGAAGAGGCGAAAAAACTTAAGAAAATAAAAGTTCTTTCGGTGGCAGAGCTTTTAGGTGAAGCTATCAGGAGAATCCACCATGATGATTCCGTAAGCTCACTTTTCGTATAAAATTTTTGAAAAAGTTTAGGAGGAAAGCAACATGAAAACTATCGAACTAACCGCCACGATAAGACCTAAGACTGGTAAAGAAATAGCCCGCAAGTTGCGAGCTCAGGGGTTAGTGCCTGGAGTTATTTACGGCCCGGAGACAGAGCCTGTACCTTTGGCGGTAAAGCTTAATGAACTAAAGAAATATCTTTATCGTTATCGTGATGAACAGCTTATTTTTAACCTTACCCTTGAAAACAACGGTTCTACCTTAAAAAAGATAGCCCTGGTCAAAGATCTTCAGTATCACCCAGTTACTGATGAAATTCTTCACGTAGATTTTTATGAAATTTCTATGGAGCGTGAAGTAGAAGTGGAAGTGCCCATTGAATTGGTTGGTAAGGCCAAGGGAGTTGAAACCGGTGGGCACTTGCAGCAGCTCCTTCAAACTATGACCGTGGCTTGTTTACCAGGCCTTATTCCTGACAAAATTGAAGTAGATGTTTCTGAACTTGATCAGGGTGATGTTATCCACGTGAAAGATCTTACTCCGCCAGAGGGTGTGCGCTATTTAGATAACCCTGATGAGCCGGTGGTAACAGTACTTGCACCTGAGGAAGAAAAAGAAGAGGCTGAAGTTGAAGAAACCGCTGAAACCGAGACTGAAACCAGCGAATAACCGTGGGCAAGTATTCCTGGCTTTGGGTGGGCCTCGGTAATCCGGGGCCCCGATATCGGTTTACCAGACATAACTTTGGTTTCCTGGTTTTAGATGAACTTGCAAGTCTTAAGGGCCTTAAGTTTTCTCAGGGTGCCTATCAGTCATTAGTCTCTGCTTACAAAGATGCCTTTCTCGTGAAGCCTCAGACCTTTATGAATCTTTCTGGAGAGGCGGTGGCTCCCTGGAGCCGTAAATTAAAAATTTCCTCTGAACGGATTTTGGTAATACATGACGATTTGGATCTGCCGTTAGGTCGTCTTAAATTTGTACCAAAAGGTGGGGCTGGCGGACATCGAGGAGTAAAGTCCGTTATTGACGCCTTAGGTACCAAAGAATTCCCTCGACTAAAATTAGGGATAGGGCGCCCCCCTCAGGGAGTTACCGTAAGGGAATACGTGCTTTCTCCTTTTTCAGAATCAGAAATACCTTTAGTAAAAAAAGTATTAGAAAGGGCAGTTGAAGCCCTTGATTATCTTCTCGAACACGATCTTCCCAAAACTATGAGCACCTTCAACCGCCCTGTAGATTAATCCTAAATTCTGGTTTGAAGGTAATCTTACTTGGGTGTTCCCATCAGCTCTTTCAAAGCCTTTTCATAAGTTTGATAAGCGTCTTCGCCAAAGAGAACCAGGCGCACCAGCGCTGGCTTCTGGTGTTCTTTAAGAAAGGAAATGATAGTAGAAAGCGCTACTCTAGCAGCCTCCTTTAAGGGATAACCATAAGCTCCCGTAGAAAGAGAAGGAAAAGCTACGGAATTTATATCTTTTTCTAGACAGAGTTTTAAAGCCGAACGGTAAGCGCTGGCGAGCAGTTCAGGTTCTCCGTGGTTGCCGCCACGCCAGATGGGGCCCACGGCATGGATTACGTATTTGGCTTTGAGGTTTCCGGCTCCGGTGATTACCGCGCTTCCGGTTGGGCAACGTCCGTAGCGGCGGGCCTCTTCGGCAATGCTTGGCCCACCTGCTCGGTGAATGGCCCCATCTACACCGCCGCCTGGAATTAGCTCCTCGTTGGCGGCGTTAACAATGGCTTCGGTGTCCTGCTGGGTTATGTCTCCTTTTACCAGCTCTAATACGCAATTTCCTATTTTTACCTGCATAGCTAACTCCCCCTTCAGCCTATTTAAGTGGCTTCGGGAATCATAGCCTTTAATTCTTCAAACTTTTTCCTGGCTTCAGGAGTCAAATTCTTGGGTACGGTTATCATGGCCTCTACATATAGATCTCCTCGCCCTCCATCAGGTCGGGGGATCCCCTTGCCACGCAGGCGAAACTTCTGGCCACACTGGGTACCAGGGGGCACCTTCATTCGCACCTTGCCGTCTAAAGTGGGCACTTCCACCTGGCCACCGAGTACCGCCGTAAATAGGCCTATGGGCTGTTTGAGGTAAAGGTCATAGCCTTTGCGTTCAAAACGCGGGTCAGGTTTGACTACCAGTTCCAGATAAAGGTCTCCTGGTGGGCCACCTTTACGTCCCGGCATCCCTTTTCCTGGTATTCTGAGCCTTGTGCCAGTTTCGGCTCCGGCTGGAATTTTTACTTTCAAGCGCTCTGTTTCTCTGATTGTTCCTGCTCCCTGGCAGGTGGGGCAGAGTTTGGTAGCCTTTCGGCCCACGCCCTTACAATGGGGGCAGATTTCAATCATTCGCACGGCGCCGCGTTTGTATTCTTTTTTGCCTTTGCCGTTACAATAGGGACAGGTCTCGGCACTTGAGAGGTCAATACCCTGGCCATGGCAGGCAGGACACGGTTTTTCAAGAGGTACTTCTATTTCTATTTCACCGCCTAAGGCCGCCTGCCTGAAGGGGACCTCTACGCGGTAGAGCACATCTGCTCCTGGTTCTGGACCAGGTTCCCAGCCCCTTTCAAAACCGAAGAGGTCGGCAAAAATATCAGCAAATCCTCCAAAGGGACTTTCTTCGTCCATGAAGAAACTAAAGTCATAAGCCCTTTCTCCGCCCGGAGTGGTAAAACTAAAGGCACTGGCTGCCTGGCGGAGCTTGTCGTACTCAGCCCGCTTTTGTGGATCAGAAAGGATCTCGTAGGCCTCTTGAATTTCTTTGAATTTTTCTTCGGCTTCTTTGTCTCCTGGATGAAGATCCGGGTGATATTTCCGCGCCAGCCGCCGATAGGCCTTTTTGATTTCCTCCTGGCTGGCGTCTGGGCTAACCCCTAATATCTCGTAAAGGTCTTTTTTGACCATTTTAACCTCCTTATTAGAAAGAATATGTTTCTAACTATTGTCTATTGTTATTAAGCTTAAGTCCAATTAAACTTGTTAGTCTCTATGGAGGCTTTGGCAAGGGGTGATATAAAAAATAATCGTCGGGTCCTCTCGGTAAGCGAACTCACCGCTGAGTTAAAAGATCTCCTTGAACAGAAATTTCCTTTTGTCTGGGTAGAAGGCGAAGTTTCAAATACCAAGAGTTCTGCCAATGGCCATCTTTACTTTTCTTTGAAAGATGATGGGGCCGTGCTTAAGGCAGTTATGTTTCGGAGCTATCGCCCCAACCTTGCCTTTAAACTTGAAGACGGCCTGCACGTTCTCTGCTTTGGCAGGCTTAGCCTTTATGAGCCTCGTGGTGAATATCAACTAATCGTCCAACAGGTAGAACCCGTGGGCTACGGTGCTTTTCGCCTGGCCCTTGAACAACTTAAGAAAAAGCTTGCCGTCGAAGGCCTGCTTGATGAAGCCCGCAAAAGGCCTCTTCCCTTCTGGCCAAAAGCAGTAGGTCTTATTACCTCTCTTCATGGGGCTGCTATTCACGACTTTTTGCGCGTGGGCTTTTTCCGCAATCCTAAAGCCCGTGTAATTATTTATCCGGTAAAGGTTCAAGGTGATGAGGCTCCTCAGGAAATTGTTGAAGCCCTTTACTCCCTGGGAAGGTTTTCCGAAGTAGAAGTGATTGTTATCGCGCGGGGTGGGGGTTCTTTTGAAGACCTTTTGCCCTTCAACCACGAAGGTCTGGCCAGAGCCATTGCTGCTTCACCAGTGCCGGTAGTTTCAGCCGTTGGCCACGAAATAGACGTAACTATCTGCGATCTGGTGGCTGACGCTCGGGCGCCAACGCCTACCGCGGCGGCTGAACTTGTATTTCCCAATTTAAATGAGCTCGCTTATGACCTTGGCCTCAAATTCAGAGCCCTACACAAGGCTTTAAAAGAAAAACTCTTGCGAGAAGAACAAAAACTCAATCATTTGAAAAAGCAGCTTAAAGACCCTCGCCAGAAAATTTATGAAAGCAGAGAAAGGCTTGGCCTGCTTAAAAGAAGGCTTGATCTTTCTTTTGCGCGCCACCTGGAGACCAAAAGAAATAAGCTCGTCTCTCTTGTGAGACAACTTGAAAGCTTATCTCCCCTAGCCGTGCTAGCAAGGGGATATAGCATCACCCGCAAACCTTCTGGTAAAGTAATCAAAGAAGCCCGAGAAGTTTTACCAGGTGATGAATTAGATATTCTTTTGCATCAAGGTAAACTCCGAGTGGAGGTAAAAGAGATTTTTCATGTTTAAAAGACTGCTTCGCCCATACGGGCTCGCAGTGACTAAATGGTAGATGGCTGGTGGCAGATGGCTGACGGTAGATGGCTATTGGCGCAGGGATTGCATTTCCTGTCCCGAGCGCTAGCGAAGGGATCCCTGTCGCAAGGTTTAAGCAACCAAATCAATCCCTTCCCGAGGCGCCAGGTGCCGTGGCGATCTACATTATGTTTTCTGAATTTTGTAAAGATCTCAGAGAAGTCGCCTCTGGGGTGGGTTTAGAAGTTAAACTTTAGTTGGGAGCAAGGGGTGAAAAATAAATTAGTCCTCTTTTTTTTCGCTTTTTTTACGATATTACCCATTAAAGCTTTGGCCTTAAGTTATCTTCCGGAAAAGCCTTATCCAGGGGCACCGTTGCTTCTAGAGCTACCTAAAAAAGTAAAGAAAGTTGAATTCCTCGGTAAAAATTATAGGCCTTTTGCCTATCGCCAAAGGTTCTATGCCCTTTTAGCCGTGCCTTTAAATACCAAACCAGGATCTTATCCCTTAAAAATTTACGCCGAAAAAATTTATTCCTATCAAGTCAAAATTTATCCCAAAAAGTATCCTGAAGAGCATCTGGAAGTGCCTCCTAAGATGATTCATTACCCGCCAGAGGTGATTGACCGCATAAAAAGAGAAGTAAAAGCCATTAAGCAGGCGCTAAGAGGCTTTACTCCCGAGCCTTTGCTTGAAGGCCCTTTTGTGTGGCCGGTGGCCGGGCGTCTTTCAAGCCCTTTTGGCTTTAGAAGGGTTTACAATGGCGTGCCAAGGAGCCATCATTCTGGCATTGATATCGCTGTTCCTAAAGGTACACCTGTAAAAGCGGCCAATAGCGGACGGGTGGTCTTGACCGGAGATTTTTATTTGCCGGGGAAAATCGTAATCATTGACCACGGCCTGGGCATCTACACTGTTTATTGTCACCTTGATAAAATTTTGGTTAAAACCGGGCAAGCGGTGGACAAAGGCGAAAAAATTGCCCTCTCTGGCGCCAGCGGGAGAGTTACTGGCCCGCATCTCCACTTTGGCTGTTACATTGAAGGTGTTAAAGTAGACCCTAAAATGCTCCTTGAGGTGTTTTGATGCGCTACGAAGAGGCCTTAAAAAGGCTTGAAGTCATTGTTCACGAGCTTGAAGAAAATGAGCTCCCCCTTGAAGAGGCGTTAAAGCGTTATGAAGAAGGCGTAAGGCTTGTGCGCTACTGCGAAAGTCTCCTTCAGGAAGCCCAGAAAAAAATAGAAGTCTTGTTAAAAGACTCTGAAGGCCATTTAGTGCGCCAGGAATTTTCTTTATTCGAGGAATAGATGGGGCTTTCAGCAGATTTTTTTGATTGGCTTAAGAGCAAACAGGAGCTCGTTAATAGGGCCTTAGAATTTTATGTTCCTTATCTTGACGGTCAGGCCAGGCGTCTTTTTGAAGCCATGCACTATAGCCTTATGTCAGGCGGAAAGAGGCTAAGGCCCATCCTCGTTATGGCTGGCGCTGAGGCTGCCGGAGGTAAGCCAGAAGACGTTTTGCCAGCAGCCTGTGCCATTGAGTGTATCCACACTTATTCTCTTATTCACGACGACCTGCCTGCTATGGACGATGACGACTTACGCCGCGGCAAGCCCACCTGCCACAAGGCCTTTGATGAGGCCACGGCTATCCTTGCTGGCGACGGGCTTTTGACCCATGCCTTTCGCCTTCTGGCGCACGAAGAGCTGGCCGATAAATTCCCGCAAGAAAATTTACTTGAAGGCATTCGCCTGGTGGCCGAAGCCGCTGGTCTTTACGGTATGGTGGCCGGGCAAATGGCTGACCTTCTGGCTGAAGGTCGAAACGTAACGGCCGAAGAACTAGCTTTTATCCACCGCCACAAGACCGCCGCTTTGATTAGGGCCTCAGTGCTTCTGGGAGCCACGCTCGTAGGGACAGGCAAAAAAGAAAAAGAGGCCTTATCAAGCTACGGCTGGAATATCGGCCATGCCTTTCAGATTATTGACGATATCCTTGACCTTACCGCTGATGAAAAGACCCTTGGGAAGCCCATAGGCTCTGACCTCAAAAAGAAAAAGGCTACTTATCCGGCCTTATTTGGGCTTGAAGCTTCACGTGCTAAAGCCCGAAGCCTCCTTGAAGAGGCTCTCTCTTCTATAGCCATATTGGGTGATAAAGCTAAAACCCTGGCGGACATTGCCTATTACGTGCTTGAAAGAAAGCTTTAAAATTTGAGCCTTTGGGCCAAGGTTTTTAAAGTTAACCCCTGCCCTATCACGGAAAATACTACGTTGAAATAAGTAAGAGATAACAAAGTAGATTTTAAGGGATGTTCAGGCAGAGAAAAGGCAAGGGCAACGGCAATACCACCTTTTAGACCGCACCAGGTAAAAAATAAAATTTTCTGAAAAGAAAGGGATTTTAGCGGTTTGGCTATAGCCATACTTACCGAAACGCTTAAAAAGCGCCCACAAAGAACTAGAAATATACTGGCTAAAGCCAGAAACAGATTAAATTGATTGATAACCAAAATTTCAAGGCCGATTAGCAAAAACAAAACAGCGTTTAACAGGCTATCAACAAGACGCCAGAAAGTATCTATATGTTCTATGGTCTTGGGGCTCATGGCCAAACGCCGACCGTGGTTCCCGATAAGGAGCCCAGCGGCTACTACCGCTAAGGGACCAGATAGATGAAATTTTTCTGCCAGAGAAAAACAGAGCATAACTAAGGCTACGGTAATTAGGACTTCCAGTTCATAATCATCAACATCTTTTAGCAATAAAAAAGCCAAAAATCCTAGTAAAGCACCTAGGACCAGACCTCCGAAACATTCCTGGACAAGAAAGACCAGAATGTGGAAAACATCAATTCCTGCTTGGGTTTTAAGCATTTCCAGTAAGGCCAAAAAGATAACTACAGCCACACCGTCATTTAATAAAGATTCGCCCACAATTACTATCTCGGTTTCTTTAGATACGCCGGCTTTTCTTAAAGTAGCAAGTACGGCTACGGGATCAGTCGGAGAAATCAAAGCCCCGAATAATAAGGCCCAAAGGATTGGCAGGTGTAAACCAAAAATCTTGGCTAAAAAATAAAGAGAAAAACCAATTATGGTGGTTGACAAAAACACACCAAGGGTAGCCAAACTAAGAATACTTCGTAAACGTTTAAGCAGGGTATCTAATTCTACGTGAAGAGCTCCGGCAAAAAGAAGAAAACCTAGCATCCAGTGTAAAACCGCTTCTTCAAATTCAATATCCTGAACAACTTTTTTAAGGTGAATGGTTAAGGGACATTCAGGCCAAAGACTTTCCGCGGCAAGAGCCAAAAAGCCAATAAAAATAGCTACTAAAGTGGCCCCTATACCGCTTGGCAACTTAAGTAGACGATAATTAAGGTAGCCAGAAAGTACGGCGAGACAGAGTAACAAGGTTACCAAAGTATAAAGGGACAT

Protein sequences of DBSCAN-SWA_1

>NC_015681|1590705:1599308|1596954_1597176_+|WP_013908141.1|DBSCAN-SWA
MRYEEALKRLEVIVHELEENELPLEEALKRYEEGVRLVRYCESLLQEAQKKIEVLLKDSEGHLVRQEFSLFEE
>NC_015681|1590705:1599308|1591684_1592311_+|WP_013908135.1|DBSCAN-SWA
MKTIELTATIRPKTGKEIARKLRAQGLVPGVIYGPETEPVPLAVKLNELKKYLYRYRDEQLIFNLTLENNGSTLKKIALVKDLQYHPVTDEILHVDFYEISMEREVEVEVPIELVGKAKGVETGGHLQQLLQTMTVACLPGLIPDKIEVDVSELDQGDVIHVKDLTPPEGVRYLDNPDEPVVTVLAPEEEKEEAEVEETAETETETSE
>NC_015681|1590705:1599308|1598075_1599308_-|WP_013908143.1|DBSCAN-SWA
MSLYTLVTLLLCLAVLSGYLNYRLLKLPSGIGATLVAIFIGFLALAAESLWPECPLTIHLKKVVQDIEFEEAVLHWMLGFLLFAGALHVELDTLLKRLRSILSLATLGVFLSTTIIGFSLYFLAKIFGLHLPILWALLFGALISPTDPVAVLATLRKAGVSKETEIVIVGESLLNDGVAVVIFLALLEMLKTQAGIDVFHILVFLVQECFGGLVLGALLGFLAFLLLKDVDDYELEVLITVALVMLCFSLAEKFHLSGPLAVVAAGLLIGNHGRRLAMSPKTIEHIDTFWRLVDSLLNAVLFLLIGLEILVINQFNLFLALASIFLVLCGRFLSVSVSMAIAKPLKSLSFQKILFFTWCGLKGGIAVALAFSLPEHPLKSTLLSLTYFNVVFSVIGQGLTLKTLAQRLKF
>NC_015681|1590705:1599308|1592909_1593452_-|WP_013908137.1|DBSCAN-SWA
MQVKIGNCVLELVKGDITQQDTEAIVNAANEELIPGGGVDGAIHRAGGPSIAEEARRYGRCPTGSAVITGAGNLKAKYVIHAVGPIWRGGNHGEPELLASAYRSALKLCLEKDINSVAFPSLSTGAYGYPLKEAARVALSTIISFLKEHQKPALVRLVLFGEDAYQTYEKALKELMGTPK
>NC_015681|1590705:1599308|1592313_1592883_+|WP_013908136.1|tRNA|DBSCAN-SWA
MGKYSWLWVGLGNPGPRYRFTRHNFGFLVLDELASLKGLKFSQGAYQSLVSAYKDAFLVKPQTFMNLSGEAVAPWSRKLKISSERILVIHDDLDLPLGRLKFVPKGGAGGHRGVKSVIDALGTKEFPRLKLGIGRPPQGVTVREYVLSPFSESEIPLVKKVLERAVEALDYLLEHDLPKTMSTFNRPVD
>NC_015681|1590705:1599308|1590705_1591653_+|WP_013908134.1|DBSCAN-SWA
MFLNHLKIFTGNANPDLARKISAYLSIPLGQAVVKTFSDGEIYVEIKENVRGSDAFVIQPTCPPVNDNLMELLIMVDALRRASARRITAVIPYYGYARQDRKVIPRTPITAKLVANLITVAGARRVLTIDLHAGQIQGFFDIPVDHLYAAPVLIRYIKEEFRGKDLVIVSPDAGGVERARAYAKRLEAGLAIIDKRRLRPNESEVMNVVGDVKGKVAIILDDMIDTAGTMCKAAEALSERGAKEVHGMATHPVLSGPALERIKKSPMKSIVVTDTIPLREEAKKLKKIKVLSVAELLGEAIRRIHHDDSVSSLFV
>NC_015681|1590705:1599308|1597176_1598079_+|WP_013908142.1|DBSCAN-SWA
MGLSADFFDWLKSKQELVNRALEFYVPYLDGQARRLFEAMHYSLMSGGKRLRPILVMAGAEAAGGKPEDVLPAACAIECIHTYSLIHDDLPAMDDDDLRRGKPTCHKAFDEATAILAGDGLLTHAFRLLAHEELADKFPQENLLEGIRLVAEAAGLYGMVAGQMADLLAEGRNVTAEELAFIHRHKTAALIRASVLLGATLVGTGKKEKEALSSYGWNIGHAFQIIDDILDLTADEKTLGKPIGSDLKKKKATYPALFGLEASRAKARSLLEEALSSIAILGDKAKTLADIAYYVLERKL
>NC_015681|1590705:1599308|1596199_1596955_+|WP_148236949.1|DBSCAN-SWA
MALSYLPEKPYPGAPLLLELPKKVKKVEFLGKNYRPFAYRQRFYALLAVPLNTKPGSYPLKIYAEKIYSYQVKIYPKKYPEEHLEVPPKMIHYPPEVIDRIKREVKAIKQALRGFTPEPLLEGPFVWPVAGRLSSPFGFRRVYNGVPRSHHSGIDIAVPKGTPVKAANSGRVVLTGDFYLPGKIVIIDHGLGIYTVYCHLDKILVKTGQAVDKGEKIALSGASGRVTGPHLHFGCYIEGVKVDPKMLLEVF
>NC_015681|1590705:1599308|1593475_1594555_-|WP_013908138.1|DBSCAN-SWA
MVKKDLYEILGVSPDASQEEIKKAYRRLARKYHPDLHPGDKEAEEKFKEIQEAYEILSDPQKRAEYDKLRQAASAFSFTTPGGERAYDFSFFMDEESPFGGFADIFADLFGFERGWEPGPEPGADVLYRVEVPFRQAALGGEIEIEVPLEKPCPACHGQGIDLSSAETCPYCNGKGKKEYKRGAVRMIEICPHCKGVGRKATKLCPTCQGAGTIRETERLKVKIPAGAETGTRLRIPGKGMPGRKGGPPGDLYLELVVKPDPRFERKGYDLYLKQPIGLFTAVLGGQVEVPTLDGKVRMKVPPGTQCGQKFRLRGKGIPRPDGGRGDLYVEAMITVPKNLTPEARKKFEELKAMIPEAT
>NC_015681|1590705:1599308|1594639_1595863_+|WP_013908139.1|DBSCAN-SWA
MEALARGDIKNNRRVLSVSELTAELKDLLEQKFPFVWVEGEVSNTKSSANGHLYFSLKDDGAVLKAVMFRSYRPNLAFKLEDGLHVLCFGRLSLYEPRGEYQLIVQQVEPVGYGAFRLALEQLKKKLAVEGLLDEARKRPLPFWPKAVGLITSLHGAAIHDFLRVGFFRNPKARVIIYPVKVQGDEAPQEIVEALYSLGRFSEVEVIVIARGGGSFEDLLPFNHEGLARAIAASPVPVVSAVGHEIDVTICDLVADARAPTPTAAAELVFPNLNELAYDLGLKFRALHKALKEKLLREEQKLNHLKKQLKDPRQKIYESRERLGLLKRRLDLSFARHLETKRNKLVSLVRQLESLSPLAVLARGYSITRKPSGKVIKEAREVLPGDELDILLHQGKLRVEVKEIFHV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013908134.1|1590705_1591653_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	3.4e-48	35.9
WP_013908135.1|1591684_1592311_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_013908136.1|1592313_1592883_+|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_013908137.1|1592909_1593452_-	macro domain-containing protein	A0A0K1L687	Scale_drop_disease_virus	4.0e-30	45.9
WP_013908138.1|1593475_1594555_-	molecular chaperone DnaJ	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	1.4e-21	33.7
WP_013908139.1|1594639_1595863_+	exodeoxyribonuclease VII large subunit	A0A1B3AYB4	Gordonia_phage	2.5e-35	36.3
WP_148236949.1|1596199_1596955_+	peptidoglycan DD-metalloendopeptidase family protein	A0A1P8BMJ0	Lactococcus_phage	8.2e-13	37.9
WP_013908141.1|1596954_1597176_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_013908142.1|1597176_1598079_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_013908143.1|1598075_1599308_-	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	6.0e-37	37.8