CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015707	Pseudothermotoga thermarum DSM 5069, complete sequence	6 crisprs	DEDDh,csa3,cas3,csx1,csm6,cas6,cas8b1,cas7,cas5,cas4,cas1,cas2,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csm2gr11,csm3gr7,csm4gr5,csm5gr7	0	5	0	0

1. NC_015707

CRISPR-Cas detection and classification

Crispr_ID: NC_015707_1

• CRISPR_ID: NC_015707_1
• CRISPR_location: 1136555-1138406
• CRISPR_type: TypeI-B
• Repeat_type: NA
• Spacer_info: 27 spacers
• Cas_protein_info: csx1,csm6,cas6,cas8b1,cas7,cas5,cas3,cas4

Consensus repeat of NC_015707_1

Consensus_repeat	Method
GTTTGAACCCTACCTATAAGGAATGGAAAC	PILER-CR
GTTTGAACCCTACCTATAAGGAATGGAAAC	CRISPRCasFinder
GTTTGAACCCTACCTATAAGGAATGGAAAC	CRT

spacers of NC_015707_1

>1.1|1136585|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GTATTCAACGTATTCATTTTTGATTGTGGTTGGTCTT
>1.2|1136652|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTGAACTTTGAAGCTCTACACTCACACCATATAC
>1.3|1136717|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACGTAGTGGGATATACAGACGAGTGGCATATATTCAT
>1.4|1136784|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GTGTCTGGATGCGTTGTTGTTGTGTAAACACATCCATC
>1.5|1136852|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTATATCTTCTCTGTTACTTATGCCTACCCATGGGCC
>1.6|1136920|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATTCTCGTTCCATACGAAGTTTTAATTGGACCCACCC
>1.7|1136987|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGTATCTGACAAAAGCAGGAATGGCTTGTGGTTTACT
>1.8|1137054|41|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TCGCCAGATACCGATATGACTTCGTTTGTTTTGACGCGCTT
>1.9|1137125|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AGTTGTTCAAGCAATTCTTGAAGCACTTCTGGATCAT
>1.10|1137192|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATTTTATATTTCTTCTACTCAACCGGTATGGTCTAT
>1.11|1137258|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCGGATTTTGTTCATCTGTAACTTTAAATGCTCTTGG
>1.12|1137325|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACCGCAAAACTGGCAACCCTGGTTACCTGGTTGCCAA
>1.13|1137392|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AGGCGTCAGCCCGGGGTTATGTGGACGAGCTATTGT
>1.14|1137458|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGCTTTTTGAAGCAGAGCCATGGTGATTGGTGTATA
>1.15|1137524|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AGCACTGACATGCTGTCCCTCCTTTCGTTTTTTGCGC
>1.16|1137591|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGTTGTGCGATCGCTGCTATGACTTGGATTCTGTTT
>1.17|1137657|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TCTTTAGCTTCTCATGTAGCTCAGTAGGCAACCTTAA
>1.18|1137724|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CGCTTTAGCTTTTCCTGCGTAACGAGTGCACCTATA
>1.19|1137790|42|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GTACTTTTACACGCAAACCAATCTTCCGCCCAGCTTGGCACG
>1.20|1137862|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATTTCACAAATCAGCGGAACACTTGACGAGATTGCGT
>1.21|1137929|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCTTTGAAACTGGCAACTTCTGTAACCTTGTTGCCAGT
>1.22|1137997|40|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GTGATTGTATCTGTTGCTTTACAATCGATTACTACGTCTG
>1.23|1138067|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GGCCTAAGGGCAATAAGGTTCTCACTTGCTTTGCTCGC
>1.24|1138135|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACGTACAGTCTGCGATGATAATTTCCACCATCATTATG
>1.25|1138203|41|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTGTATGTTTCGTCTGCTATTTCATTGAGTCCTTTCGCCAT
>1.26|1138274|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AAAGACTTAATTAGACACATCAACAGTTGGTTAGGC
>1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CGCTTCACAGCTTCATTTTCCATCTTTAACTTCTTCA

CRISPR arrays and Neighbor proteins around NC_015707_1

CRISPR arrays

The CRISPR arrays of NC_015707_1

>merge|NC_015707|1|1136555-1138406|PILER-CR,CRISPRCasFinder,CRT
GTTTGAACCCTACCTATAAGGAATGGAAACGTATTCAACGTATTCATTTTTGATTGTGGTTGGTCTTGTTTGAACCCTACCTATAAGGAATGGAAACTTTGAACTTTGAAGCTCTACACTCACACCATATACGTTTGAACCCTACCTATAAGGAATGGAAACACGTAGTGGGATATACAGACGAGTGGCATATATTCATGTTTGAACCCTACCTATAAGGAATGGAAACGTGTCTGGATGCGTTGTTGTTGTGTAAACACATCCATCGTTTGAACCCTACCTATAAGGAATGGAAACTTTATATCTTCTCTGTTACTTATGCCTACCCATGGGCCGTTTGAACCCTACCTATAAGGAATGGAAACATTCTCGTTCCATACGAAGTTTTAATTGGACCCACCCGTTTGAACCCTACCTATAAGGAATGGAAACTGTATCTGACAAAAGCAGGAATGGCTTGTGGTTTACTGTTTGAACCCTACCTATAAGGAATGGAAACTCGCCAGATACCGATATGACTTCGTTTGTTTTGACGCGCTTGTTTGAACCCTACCTATAAGGAATGGAAACAGTTGTTCAAGCAATTCTTGAAGCACTTCTGGATCATGTTTGAACCCTACCTATAAGGAATGGAAACATTTTATATTTCTTCTACTCAACCGGTATGGTCTATGTTTGAACCCTACCTATAAGGAATGGAAACGCGGATTTTGTTCATCTGTAACTTTAAATGCTCTTGGGTTTGAACCCTACCTATAAGGAATGGAAACACCGCAAAACTGGCAACCCTGGTTACCTGGTTGCCAAGTTTGAACCCTACCTATAAGGAATGGAAACAGGCGTCAGCCCGGGGTTATGTGGACGAGCTATTGTGTTTGAACCCTACCTATAAGGAATGGAAACTGCTTTTTGAAGCAGAGCCATGGTGATTGGTGTATAGTTTGAACCCTACCTATAAGGAATGGAAACAGCACTGACATGCTGTCCCTCCTTTCGTTTTTTGCGCGTTTGAACCCTACCTATAAGGAATGGAAACTGTTGTGCGATCGCTGCTATGACTTGGATTCTGTTTGTTTGAACCCTACCTATAAGGAATGGAAACTCTTTAGCTTCTCATGTAGCTCAGTAGGCAACCTTAAGTTTGAACCCTACCTATAAGGAATGGAAACCGCTTTAGCTTTTCCTGCGTAACGAGTGCACCTATAGTTTGAACCCTACCTATAAGGAATGGAAACGTACTTTTACACGCAAACCAATCTTCCGCCCAGCTTGGCACGGTTTGAACCCTACCTATAAGGAATGGAAACATTTCACAAATCAGCGGAACACTTGACGAGATTGCGTGTTTGAACCCTACCTATAAGGAATGGAAACGCTTTGAAACTGGCAACTTCTGTAACCTTGTTGCCAGTGTTTGAACCCTACCTATAAGGAATGGAAACGTGATTGTATCTGTTGCTTTACAATCGATTACTACGTCTGGTTTGAACCCTACCTATAAGGAATGGAAACGGCCTAAGGGCAATAAGGTTCTCACTTGCTTTGCTCGCGTTTGAACCCTACCTATAAGGAATGGAAACACGTACAGTCTGCGATGATAATTTCCACCATCATTATGGTTTGAACCCTACCTATGAGGAATGGAAACTTGTATGTTTCGTCTGCTATTTCATTGAGTCCTTTCGCCATGTTTGAACCCTACCTATGAGGAATGGAAACAAAGACTTAATTAGACACATCAACAGTTGGTTAGGCGTTTGAACCCTACCTATGAGGAATGGAAACCGCTTCACAGCTTCATTTTCCATCTTTAACTTCTTCAGTTTGAACCCTACCTATAAGGAATGGAAAA

>NC_015707|1|1|1136555-1138406|PILER-CR
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTATTCAACGTATTCATTTTTGATTGTGGTTGGTCTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTGAACTTTGAAGCTCTACACTCACACCATATAC
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACGTAGTGGGATATACAGACGAGTGGCATATATTCAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTGTCTGGATGCGTTGTTGTTGTGTAAACACATCCATC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTATATCTTCTCTGTTACTTATGCCTACCCATGGGCC
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATTCTCGTTCCATACGAAGTTTTAATTGGACCCACCC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGTATCTGACAAAAGCAGGAATGGCTTGTGGTTTACT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TCGCCAGATACCGATATGACTTCGTTTGTTTTGACGCGCTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGTTGTTCAAGCAATTCTTGAAGCACTTCTGGATCAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATTTTATATTTCTTCTACTCAACCGGTATGGTCTAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GCGGATTTTGTTCATCTGTAACTTTAAATGCTCTTGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACCGCAAAACTGGCAACCCTGGTTACCTGGTTGCCAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGGCGTCAGCCCGGGGTTATGTGGACGAGCTATTGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGCTTTTTGAAGCAGAGCCATGGTGATTGGTGTATA
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGCACTGACATGCTGTCCCTCCTTTCGTTTTTTGCGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGTTGTGCGATCGCTGCTATGACTTGGATTCTGTTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TCTTTAGCTTCTCATGTAGCTCAGTAGGCAACCTTAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	CGCTTTAGCTTTTCCTGCGTAACGAGTGCACCTATA
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTACTTTTACACGCAAACCAATCTTCCGCCCAGCTTGGCACG
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATTTCACAAATCAGCGGAACACTTGACGAGATTGCGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GCTTTGAAACTGGCAACTTCTGTAACCTTGTTGCCAGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTGATTGTATCTGTTGCTTTACAATCGATTACTACGTCTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGCCTAAGGGCAATAAGGTTCTCACTTGCTTTGCTCGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACGTACAGTCTGCGATGATAATTTCCACCATCATTATG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGTATGTTTCGTCTGCTATTTCATTGAGTCCTTTCGCCAT
GTTTGAACCCTACCTATGAGGAATGGAAAC	AAAGACTTAATTAGACACATCAACAGTTGGTTAGGC
GTTTGAACCCTACCTATGAGGAATGGAAAC	CGCTTCACAGCTTCATTTTCCATCTTTAACTTCTTCA
GTTTGAACCCTACCTATAAGGAATGGAAAA

>NC_015707|1|1|1136555-1138406|CRISPRCasFinder
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTATTCAACGTATTCATTTTTGATTGTGGTTGGTCTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTGAACTTTGAAGCTCTACACTCACACCATATAC
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACGTAGTGGGATATACAGACGAGTGGCATATATTCAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTGTCTGGATGCGTTGTTGTTGTGTAAACACATCCATC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTATATCTTCTCTGTTACTTATGCCTACCCATGGGCC
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATTCTCGTTCCATACGAAGTTTTAATTGGACCCACCC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGTATCTGACAAAAGCAGGAATGGCTTGTGGTTTACT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TCGCCAGATACCGATATGACTTCGTTTGTTTTGACGCGCTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGTTGTTCAAGCAATTCTTGAAGCACTTCTGGATCAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATTTTATATTTCTTCTACTCAACCGGTATGGTCTAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GCGGATTTTGTTCATCTGTAACTTTAAATGCTCTTGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACCGCAAAACTGGCAACCCTGGTTACCTGGTTGCCAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGGCGTCAGCCCGGGGTTATGTGGACGAGCTATTGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGCTTTTTGAAGCAGAGCCATGGTGATTGGTGTATA
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGCACTGACATGCTGTCCCTCCTTTCGTTTTTTGCGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGTTGTGCGATCGCTGCTATGACTTGGATTCTGTTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TCTTTAGCTTCTCATGTAGCTCAGTAGGCAACCTTAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	CGCTTTAGCTTTTCCTGCGTAACGAGTGCACCTATA
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTACTTTTACACGCAAACCAATCTTCCGCCCAGCTTGGCACG
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATTTCACAAATCAGCGGAACACTTGACGAGATTGCGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GCTTTGAAACTGGCAACTTCTGTAACCTTGTTGCCAGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTGATTGTATCTGTTGCTTTACAATCGATTACTACGTCTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGCCTAAGGGCAATAAGGTTCTCACTTGCTTTGCTCGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACGTACAGTCTGCGATGATAATTTCCACCATCATTATG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGTATGTTTCGTCTGCTATTTCATTGAGTCCTTTCGCCAT
GTTTGAACCCTACCTATGAGGAATGGAAAC	AAAGACTTAATTAGACACATCAACAGTTGGTTAGGC
GTTTGAACCCTACCTATGAGGAATGGAAAC	CGCTTCACAGCTTCATTTTCCATCTTTAACTTCTTCA
GTTTGAACCCTACCTATAAGGAATGGAAAA

>NC_015707|1|1|1136555-1138406|CRT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTATTCAACGTATTCATTTTTGATTGTGGTTGGTCTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTGAACTTTGAAGCTCTACACTCACACCATATAC
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACGTAGTGGGATATACAGACGAGTGGCATATATTCAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTGTCTGGATGCGTTGTTGTTGTGTAAACACATCCATC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTATATCTTCTCTGTTACTTATGCCTACCCATGGGCC
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATTCTCGTTCCATACGAAGTTTTAATTGGACCCACCC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGTATCTGACAAAAGCAGGAATGGCTTGTGGTTTACT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TCGCCAGATACCGATATGACTTCGTTTGTTTTGACGCGCTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGTTGTTCAAGCAATTCTTGAAGCACTTCTGGATCAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATTTTATATTTCTTCTACTCAACCGGTATGGTCTAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GCGGATTTTGTTCATCTGTAACTTTAAATGCTCTTGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACCGCAAAACTGGCAACCCTGGTTACCTGGTTGCCAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGGCGTCAGCCCGGGGTTATGTGGACGAGCTATTGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGCTTTTTGAAGCAGAGCCATGGTGATTGGTGTATA
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGCACTGACATGCTGTCCCTCCTTTCGTTTTTTGCGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGTTGTGCGATCGCTGCTATGACTTGGATTCTGTTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TCTTTAGCTTCTCATGTAGCTCAGTAGGCAACCTTAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	CGCTTTAGCTTTTCCTGCGTAACGAGTGCACCTATA
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTACTTTTACACGCAAACCAATCTTCCGCCCAGCTTGGCACG
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATTTCACAAATCAGCGGAACACTTGACGAGATTGCGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GCTTTGAAACTGGCAACTTCTGTAACCTTGTTGCCAGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTGATTGTATCTGTTGCTTTACAATCGATTACTACGTCTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGCCTAAGGGCAATAAGGTTCTCACTTGCTTTGCTCGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACGTACAGTCTGCGATGATAATTTCCACCATCATTATG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGTATGTTTCGTCTGCTATTTCATTGAGTCCTTTCGCCAT
GTTTGAACCCTACCTATGAGGAATGGAAAC	AAAGACTTAATTAGACACATCAACAGTTGGTTAGGC
GTTTGAACCCTACCTATGAGGAATGGAAAC	CGCTTCACAGCTTCATTTTCCATCTTTAACTTCTTCA
GTTTGAACCCTACCTATAAGGAATGGAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015707.1|WP_013932435.1|1126563_1127439_-|RnfABCDGE-type-electron-transport-complex-subunit-D	unknown	unknown	gnl|CDD|376991
NC_015707.1|WP_013932451.1|1146428_1147148_+|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl|CDD|187824
NC_015707.1|WP_013932439.1|1131939_1132860_+|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl|CDD|259802
NC_015707.1|WP_041446618.1|1132859_1133705_+|protease-modulator-HflC	unknown	unknown	gnl|CDD|259803
NC_015707.1|WP_013932441.1|1133706_1134381_+|noncanonical-pyrimidine-nucleotidase,-YjjG-family	unknown	unknown	gnl|CDD|162788
NC_015707.1|WP_013932449.1|1143968_1145471_+|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_015707.1|WP_169310349.1|1139373_1139622_+|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932450.1|1145463_1146432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|274215
NC_015707.1|WP_013932448.1|1143177_1143927_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl|CDD|224499
NC_015707.1|WP_013932453.1|1149348_1149846_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_015707.1|WP_013932434.1|1125955_1126567_-|FMN-binding-protein	unknown	unknown	gnl|CDD|235423
NC_015707.1|WP_013932445.1|1139680_1140508_+|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932447.1|1142021_1143164_+|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_015707.1|WP_013932446.1|1141127_1142006_+|CRISPR-associated-protein-Csx14	csx1	cd09741_csx1_CAS-III	gnl|CDD|187872
NC_015707.1|WP_013932452.1|1147135_1149328_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|273707
NC_015707.1|WP_013932437.1|1128904_1129840_+|DUF1848-domain-containing-protein	unknown	unknown	gnl|CDD|378091
NC_015707.1|WP_013932438.1|1130091_1131825_+|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|214599
NC_015707.1|WP_013932436.1|1127724_1128888_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|100107
NC_015707.1|WP_013932442.1|1134350_1135154_-|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932443.1|1135231_1136260_+|zinc-binding-dehydrogenase	unknown	unknown	gnl|CDD|176227

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015707.1|WP_013932446.1|1141127_1142006_+|CRISPR-associated-protein-Csx14	csx1	cd09741_csx1_CAS-III	6.7e-45	148.0	0.5
NC_015707.1|WP_013932452.1|1147135_1149328_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	1.3e-79	262.5	0.5
NC_015707.1|WP_013932449.1|1143968_1145471_+|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	3.8e-133	439.4	0.0
NC_015707.1|WP_013932448.1|1143177_1143927_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	3.3e-48	159.4	1.7
NC_015707.1|WP_013932453.1|1149348_1149846_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	8.2e-48	157.3	1.0
NC_015707.1|WP_013932450.1|1145463_1146432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	1.9e-68	225.6	0.0
NC_015707.1|WP_013932447.1|1142021_1143164_+|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	3.8e-42	138.4	0.0
NC_015707.1|WP_013932451.1|1146428_1147148_+|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	8.1e-18	59.6	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015707.1|WP_013932435.1|1126563_1127439_-|RnfABCDGE-type-electron-transport-complex-subunit-D	gnl|CDD|376991	pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family. This family of bacterial proteins includes a sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT. The family also includes proteins involved in nitrogen fixation, RnfD and RnfE. The similarity of these proteins to NADH-ubiquinone oxidoreductases was previously noted.	4.05694e-85
NC_015707.1|WP_013932446.1|1141127_1142006_+|CRISPR-associated-protein-Csx14	gnl|CDD|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	3.06749e-43
NC_015707.1|WP_041446618.1|1132859_1133705_+|protease-modulator-HflC	gnl|CDD|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.59343e-113
NC_015707.1|WP_013932441.1|1133706_1134381_+|noncanonical-pyrimidine-nucleotidase,-YjjG-family	gnl|CDD|162788	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family. This HAD superfamily includes including YjjG from E. coli and YfnB from B. subtilis. YjjG has been shown to act as a house-cleaning enzyme, cleaving nucleotides with non-canonical nucleotide bases. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).	1.79023e-52
NC_015707.1|WP_013932434.1|1125955_1126567_-|FMN-binding-protein	gnl|CDD|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	5.89453e-24
NC_015707.1|WP_013932450.1|1145463_1146432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	3.33305e-69
NC_015707.1|WP_013932448.1|1143177_1143927_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.74495e-42
NC_015707.1|WP_013932453.1|1149348_1149846_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.39822e-61
NC_015707.1|WP_013932447.1|1142021_1143164_+|putative-CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	4.64834e-39
NC_015707.1|WP_013932451.1|1146428_1147148_+|CRISPR-associated-protein-Cas5	gnl|CDD|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.0378e-14
NC_015707.1|WP_013932439.1|1131939_1132860_+|FtsH-protease-activity-modulator-HflK	gnl|CDD|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.76732e-124
NC_015707.1|WP_013932452.1|1147135_1149328_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	4.64664e-69
NC_015707.1|WP_013932437.1|1128904_1129840_+|DUF1848-domain-containing-protein	gnl|CDD|378091	pfam08902, DUF1848, Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.	3.19278e-161
NC_015707.1|WP_013932438.1|1130091_1131825_+|methyl-accepting-chemotaxis-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	9.72131e-55
NC_015707.1|WP_013932436.1|1127724_1128888_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|100107	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).	0.000172474
NC_015707.1|WP_013932443.1|1135231_1136260_+|zinc-binding-dehydrogenase	gnl|CDD|176227	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0

Protein sequences

>NC_015707.1|WP_013932443.1|1135231_1136260_+|zinc-binding-dehydrogenase
MKAVILKDFGGVENLHYVEDFPTPQIREDEVLVRVKAVALNHLDIWVRTGALAVKPELPHILGSDVSGIVEKVGSLVSNVKEKDEVIIAPGLSCGVCHECQSGRDNLCKDYDILGMKNKGGYAEFVKVPERNVIKKPSNLSFEEAASYPLTFLTAWNALVSKGKIRPHQKVLIWAGSSGVGVAAIQLAKLLGAFVITTTGNEEKMRKCKDLGADVVLNHYTDDIPRKVRELFKEGIDLVVDHVGAQTFWKSVECLKKGGKLVFFGTTTGSQAQIDIRYLFVGEIELLGAYMGSRADLFKITQLMERGVLKPIVDKIFPLQQAREAHLYLEQSKHFGKIVLTV
>NC_015707.1|WP_013932442.1|1134350_1135154_-|hypothetical-protein
MNIEAVTNEIKLVASRISNQKLWVITENAFKEAFKMTFIHKYYAFKFFLAASYKALKALAKYFKESFQAKGIKGILIEAPIRAKNKAVEKINQFWKDWKSMDEKERFDKLLGYVVFGISAVITGGGFDFEGGIPDTDIKLGGIGSHRNLLSHTIIIGFISEFAIRFVTQLAVEAEKEEIAENLPFIKLLAEFSRKYQDYLVNGMWFGLFVHFLKDSKIFSSSRTKPYVGLKNLTVKQHKQIFAANAFTSMAFSVGKANHNKRLKSSS
>NC_015707.1|WP_013932441.1|1133706_1134381_+|noncanonical-pyrimidine-nucleotidase,-YjjG-family
MKYEMVYFDLDNTLLDFSRSEKEALTSIFEEKGFDLTDELINQYVLINKKWWQYYAKGLYPKDYIVVARFEEFLNLLGRTDLNTVEIAENYLEKLSNLAYFLPGAEEFLEKLKSKGQRMAILTNGVQAVQEKRCKLLKLERFVEFVLTSEAVGKPKPDPTIFHVASKMSGVSLEKSVYVGDDPVIDFEASKNADVDFILFDPTGACSFSGKTVKNYDELLSLLL
>NC_015707.1|WP_041446618.1|1132859_1133705_+|protease-modulator-HflC
MKTAILIISLVILAVVGMFLAFSFFIVDQAEYAIVLRFGEIRKVIEEPGLYMKTPFVENVVRFSKKYYIYDIPVEKVITLDKKTLLVDSYAVWRISDPRRFMERLRTVSLALPRIDDVVYSGLRNILAKYEFDDIVTSERLYLKDITDFAKTNLADFGIEVIDVRVKHTDLPQENQQAVFERMKSERQSIAAMIRAEGQREAQRIKAEADKRAAIIRAEAMSESEKIKGMGEAMAAKIYAEAFGKDEYFYRLWRTLESYKTVIPGSIVILDKNLSILEQVK
>NC_015707.1|WP_013932439.1|1131939_1132860_+|FtsH-protease-activity-modulator-HflK
MKTKFVVIMIVLLLLIVYFATGIYQVDPSEVALVKTFGKHVATVGPGIHLRAPWPFQSHMKVDVQTVRKIEIGFRTIKPGQYAAKPNEALMLTGDGNIVSVEAVAQFKVSDPAKFVFKVTNPNDLVKFTVESVLRDRVAKRTVDEVLTSERDRIATEVAQIAQELLNAYDCGVTILNVLLQEVVPPQPVIAAFDDVNNAKQDKERYINEAMKYANSLIPAVEGEARRILLEAEAYTEQRILKAQGEAERFASILREYKSSPGITEQRLRIETLEEVLPKATRIIVLDISQKILFFNLQDLLVGGSK
>NC_015707.1|WP_013932438.1|1130091_1131825_+|methyl-accepting-chemotaxis-protein
MKLSIRIIGVIIAIVLAGTATGVLFWFSIVALKTSTVQLSELAFQDKVTAAINMFVDLVARTYGKLRIENNRLVDANGVPLDGRFELVDTISKNMDIVATIFKAEGDDFIIVVTSIRKDDGSRAVGTFLGKDSAAYNPVRNKQRYIGRAMILGKEYFTAYDPYLDDKGNVIGILFVGVPAEKLNALAKEQQSKAMKNMSIALAIIVAGSIILVVVIFEITMAKAVKKLYPVIKSFSEGDFTAAYNIKTISKEFTELKTHLDELRSKLTPLFQQLQASAEKMLSASRDLSTTAEELSATSEELAAQMDNVNKNAQNASASIQEVTSGVQEVAASAQNVSKAAQSLTEKASSVKTAADRGNEAVKTIVQMITQTKESAQRTEKVVLELAESAKNIGQIVETINSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESKNATQKISEILSQIQQSAQKASMETVEAVKQVEKTAEQSVVIEKELSNILSEVREISGMIESLAASSQQMSAAAEEMSSAMDAATRSITDIAHQIDEMLNAVKQQAEASQQVSGSSEELSAIAESLVEQVKKFKI
>NC_015707.1|WP_013932437.1|1128904_1129840_+|DUF1848-domain-containing-protein
MILSVSRRTDIPSFYSEWFINRVREGFVYVRNPFNAKQISKVKITPDVVDGIVFWSKDPKPLMRYLDEIDSYGYVYYFHFTITGYGKEIEPNLRDKAEIIETFIELSERLGKHRVILRYDPIFLTEKYSVDFHIETFEKLVEKLGKYTEKIVISFLDDYRKVSRNMKNIEVKELTEDDIYRLAEKFGKIASTRNLAVETCAEKIDLDNFGIKHGRCVDAELIERISKVKLKIPRLDKQRPACLCHQCIDIGEYDTCLHGCVYCYANVNKEAALKNYKLHDPNSPILFGEYDEKGVKERDVKSLAMNQDRLF
>NC_015707.1|WP_013932436.1|1127724_1128888_+|class-I-SAM-dependent-methyltransferase
MIFKVEFPTYLEQAVRKITNQENISIDCIVKALEGMYNKNEENLVENYSTNYSKEKKIAYLWYYFPYNLFKIHRPLSELHSANLLPEKVNVLDIACGPGTLSVGIAEFYKKLALKNPSKSYLLRICLVDKEEEFLSYAKILLDTVKDSAPKNLKIVYSTVTQTIQPQTRFRVEELFDIICAGNFLNYYEHGKKSMSYLPFFENVLEILDEKGSLILIEQSKKELSRPLKGIRDILVKSRRCNLFSPCLVDPSNGNEKCYDCYQAFEVEIENCGLIQALVDCGANKRKHHTRHPFSYVILRKDGQKRFDKGQRSSRSVFGVVKAKSWDHNSFAICDGENEIWVRLPNHDLIRRIDTGAIVSVKSGRILCNQKEISVQCDSQIEIIREF
>NC_015707.1|WP_013932435.1|1126563_1127439_-|RnfABCDGE-type-electron-transport-complex-subunit-D
MALFQKQPLMRRVLYSLVPIYVFAFFLYGLRVLWYSLVIFTVGILTEYVMEKRKGKSVTEAVLVTCSLLTLSMPPSAPLWVAGIASFFGVFIAKEVYGGFGRNVFNPAIVGRLFVYITFPVYMTTGWIIPRTDAITSATPLDLLRAGETVKFSELIVGVRSGSLGESPILLIVAAAVYLIVTKTASWRIILSTVGSAFGLNLLLNAFGKGMPVLPAMLSGSLLFVAVFMATDPVSAPKKTISQWFYGMIIGCVTVIIRNFSLFSEGTSFGVLMGNIFASLLDELRIKKVKK
>NC_015707.1|WP_013932434.1|1125955_1126567_-|FMN-binding-protein
MNKESKLFTVIFTFVSTFAFVLILSIINFATTARIKRNEELFKIRAILNAFGFEYKSDQEAFKIFNEKVSTQKIRDVVVYKATVNGEEYLAFIFTGSGLWGTIQGVIAFDSNIEKVVGIDFISHSETPGLGGRIEEKWFKDQFKGKKIPDGGFVLRIGGSGDYDPDSGRFDAITGATSTSKAVEKIVNEAILTFKKVVGGERR
>NC_015707.1|WP_169310349.1|1139373_1139622_+|hypothetical-protein
METGRMGVKMGVERKEIPQRMKEEMRNSHESTGFITFSFLKRPYDELAVNLKKFRGLDFKYEDVLKELNSTCYSMRPGFESR
>NC_015707.1|WP_013932445.1|1139680_1140508_+|hypothetical-protein
MTVYGNLKLAYMKDGQLLKFYICHNTNEIAFHKLLTRKLSYAFFKKIYTDLKLDKLEDFGKYVIYMDTFDESPILGDHSGGGMLFSIYLLQVLGQNRYKIEKMTGGFFSCMEQYPDTIAPMRGMYSLLCKITLENSERKHKMREVLDKLNEDRPLIKRIIGDEVALEELRDICPVNVIQNSEKVRDALSLCNTEDNDRVDIRFYMGLNDDSHVFDLGYHRDESRKPDDPIKTTEMGREFPYNYLSPSVVYYRISLGFGAKLLMPELKQMPELDEM
>NC_015707.1|WP_013932446.1|1141127_1142006_+|CRISPR-associated-protein-Csx14
MLARKKRGGKSSVLIATLGTEPQVVTITLDKLLEQKYLVEKVVVIYTSDNNVSNGLATLKQEFSQNENYSNITLTCEPVQHNNVILSDFTSEEALNALFRTIYKVVRDEKKSGRIVHLSISGGRKVMGVVATVVAQLLFGEEDKLWYLITKNWKAGCERKFHLEQHEEAWLIDMPVIRWSEADTFMEQVAQLNDPKEISIWYKKLTKKANQQKLSEFVEQHLGERERQLLKLVCKGLSNEEIAREMYIEKQTVANHLQNINNKLRDFLGKEDMKINRKVLITMFMPIFESED
>NC_015707.1|WP_013932447.1|1142021_1143164_+|putative-CRISPR-associated-protein
MKAAKLIFMVSTVGTSLLTNAAVKDQQLQSLLRETANLKEKDLKEDQKEVLQKLIDQVGKRLELSTVQEIKRMSAELNGILSYFNNQKPDPTSIHVLMSTDTYQGISTAKLVQERLRQFGVENVQIFTPPNFDVSTTKNFSEGMKAIVKWCYEVAKGYREEGYHVVFNLVGGFKSFQSVMNTLGMFYADEVIYIFEAPSADLIRIPKLPIKMEDQPILKEKVVLFAMMEHCYIAEPHEVSNIPEIYLEKDQNGRATLSEWGLLVWNENKYEILKNMELEKLTFPKIVYEKSFLKDFEQIANSKQKVDLILTLAKVSVNYSEKGIAALKADPGLLYENYKNREDRLGHFRINEGWRVSCEERNGMLFLRHVGTHDYVNRNP
>NC_015707.1|WP_013932448.1|1143177_1143927_+|CRISPR-associated-endoribonuclease-Cas6
MRLTITLQSDEKINLPVNYNHMIQAMIYNVMDDPTFRAYLHEHGFELGKRSFKMFTFSWLMGKSVFEESTKRIIFEPPVKLVVCSPMNSIMRELGSGLLKKKYIRLGENLLQISEIATMNNDVNESRIRVKMLSPIVVYSTFEKPDQNKQTHYYSPFEERFNELVKQNLEKKYFIVYGENLSEDGFLIEPVKVGGRHFVITSYKNTWIKGWMGEYELRGNPKLLKLALDAGLGSKNSLGYGCCEVVQGK
>NC_015707.1|WP_013932449.1|1143968_1145471_+|hypothetical-protein
MNTNPPIKVDYTPTGNFWIDNGLVHLLIKKGPGIYPANDLLRELRNDLLQPTGKMDQYYDQNTKQLVTYPKLGWIAPASHFIKVNDTSSNKISVAGKEYRTAPANPELNLKYKSKIADCEICGTHGLVVDTSMWIFPMVAAVDKFGNFYSGSKKGTLLCPRCAVAGVACYLSLLWVVQGRQTLHIFLFHGDLKDLELLRKEVIDYLKLSESKAGNVKLPFYGDYPHETILALLLELFSHIGSSKTLSDERRKILASIFGVETAAVGSKGSKLSLYCLSGSIEGTRQVFKARHLSNITQLHALYKLYEGWIAALADSQNPKQALTQVFRQFTVSQKQREETIWREKIAWAILEFSDPLPYVEDYLFEGKLRSDNKTPLVWGTVNVIDYYCKEVLSMEEKLIKVLMGFGSNLGKQSAEKKDMSVLYALRNAKNVEEYLKVLNDAQFRFEMMVPREIVELQEESKIFNTPWVRVKTLLSIYAMNSYLRTLKGGNEGQGGEKDE
>NC_015707.1|WP_013932450.1|1145463_1146432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNKPKAVCIGYLSKVSVGNVNSSHTEGNVIVAKKVTLPDGNFIPYYSGQCIRRIIKDRFEDFSLEVSDLAAKVENKQVLPPVRPWEFIDEDLFGYMEPGGRKRTSPVRVSAAIGLFQYQGDRDLGTRNFQRFGLEASEGGNMYETEVYANLFRGNILVELDRLGVFSDLEIGEEAGKHLKDLERVEKNGRIIWVLPKEKRVERLKWLLEAVKTLWGGGRTARLLSDLSPKFFAYAKLTTKHPVFLESIEVKYSQGKYELILDPLLSTVKKFGDYADRFIFGFESGFLSNENDIRKAFSEHNKVTVCHIHEAFEEAKKDVESI
>NC_015707.1|WP_013932451.1|1146428_1147148_+|CRISPR-associated-protein-Cas5
MKALWVKVIAQACSFRPPLDHVYQRTLPLPPPTTILGFAGAALGLEDKAIWSQESPLLNVKVSALLLNKPGFAKDMWKILKIDNYKISERSPYFREMLFNARYMLVYGSADEDFLKRLKEAILDPVYALSLGREDELVLVEECDIAELQVGGTTFYGTALAGDISKMKFHWIPKGGVKFEPPICENMPVAFEVDKDGRRYPRSKQLLTFLPYDLHVVLNEPVNSYTLEILKGRNFTWMS
>NC_015707.1|WP_013932452.1|1147135_1149328_+|CRISPR-associated-helicase/endonuclease-Cas3
MDVLDVLAKPDVPLIKHSSEVVQLAQKIAKILIIENGISQRAILACAFHDIGKSTHSFQKFVRKETKKAYPHALASLPFIMLVESILFDENLLATAAVLTHHSPFTPMLYKGFESSSKEPDYLDKEIIKKLLAQLLQEINMRLPNSQTVDEITQQALTLGKNPAAILDTQITYQDGDTETIRLKLMNLPIDDFSNVKAILQLSDWLVSSSSLSVRNLFLGKSNAWIEKIKSTYNLRNFQRKVLSSPGYVLWLKAPTGTGKTEALLLWARDSKKLIYLLPTQATVNAMWKRLAKLFGKRKVSISHGMSGYLLRSQEKDEQEYWNEKLLAKVFGKPVTVATLDQFLLAHLNTRHWEIQRTLIRNSTVIIDEIHCYDGYTLGLLSQALEFEKPLKIAFASATMPEFLKNILPQGQEIEAEKKLWNRRRHFVELVENPLEDCVDEILRYANQGKNVLVVCNTVKKAQQMYQNISQRYRKVKLLHARFIYKDRLKKERHLIENQNKMRGVILVSTQVVEVSLNISFDVLFTQIAPIDALVQRLGRVNRFPSRSNQAAPVFVSLYEDEDSKRIYDAEILQESRQITMNLPKTPTEREWAEAADQLYKAIWESQTFQQEFNEGKRTLYELRKMLGCYTIDLRDEDMRRRFSTRKGQLSIDVLPAKFFDEARKLMETNQSWQIVEYLVPVPIGWLYAYKDWFQPISDLSCFQVDLEYDQKLGLLPPSKDKMPSNMEIL
>NC_015707.1|WP_013932453.1|1149348_1149846_+|CRISPR-associated-protein-Cas4
MTPKITGILVNCYLICPRKVWLVSRQIGPSKDNIHLQLGEILRQESYERELREVHIEHLALDVVIIRDENLIIAEVKKSSKAKKAARMQLAFYLYELKRMGIEAEGELRFPEERKRERLILDESLQKEIEIVMEDIKQLLKSEKPPQPKWIGYCRNCAHSEFCWA

Crispr_ID: NC_015707_2

• CRISPR_ID: NC_015707_2
• CRISPR_location: 1151411-1152854
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 21 spacers
• Cas_protein_info: cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6,csm6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11

Consensus repeat of NC_015707_2

Consensus_repeat	Method
GTTTGGACACTACCTATGAGGAATGGAAAC	PILER-CR
GTTTGGACACTACCTATGAGGAATGGAAAC	CRISPRCasFinder
GTTTGGACACTACCTATGAGGAATGGAAAC	CRT

spacers of NC_015707_2

>2.1|1151441|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTTTTCAAAAATATACTTCGCAGTCGAAATTGACA
>2.2|1151507|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCTAAAATATTCGGGACAGCGGGCTTTGCTGTTCCA
>2.3|1151573|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACGTCTAAAACCTTGTGCATTGCTAGTCTATCCGTAC
>2.4|1151640|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTGTGCATCTTCCGGCAGTTCTGTTGCTCCCTCT
>2.5|1151705|39|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATGATTTTAATAAAGGGGGGGTTTGATGGGTAAAAAACC
>2.6|1151774|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATGGTGGGCGCAAAAAGAAGGAGGGATTTACATGATA
>2.7|1151841|34|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GGTGTACTAGCCAACAGGCACGGCATCTGGCAGA
>2.8|1151905|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TCTTTTTCTGATTCGCCGTTGATACTAACTCTGATTA
>2.9|1151972|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGTATTTCACGGATCTATGCAGCTTCAGATGGATC
>2.10|1152037|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCCTGCAAGGCGTTCAAGTTGACGCTAAGACCTATCTC
>2.11|1152105|42|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATGTCAATCGCCTTCGCTGCGGCACGTAACGGAGACATACCC
>2.12|1152177|39|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CCGTTAACATACTTAATCGTAAACGGTGGATTCTCCCCA
>2.13|1152246|41|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TCCGCTGCCCCTTCTTTGCCTGCAGGTTCTTCTCTATATCC
>2.14|1152317|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CCTTATTCGTGATGTTTAATCTTTCCAACACTGAAG
>2.15|1152383|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TCTGGCTTAAAAGCAAAGTGATGAGTTCTCTGCCAGT
>2.16|1152450|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCTTCAAGCAGGTGGACTACAACCCGCTTGTTAAAG
>2.17|1152516|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATGCCTTGTGTATTCCAACAATTCCGCATAGAAAATC
>2.18|1152583|39|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TCCGAATGCGGATTATAGTATCTCTGTTTTCTTAGACAT
>2.19|1152652|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATTAATGGGATCTACGTAAATGGCATTGGCCCGCTTA
>2.20|1152719|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTGCGGCACGGCGGCAAATTTCGTCATAGTTCATTT
>2.21|1152785|40|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TCGTCATACCCTGCGCCGTCGTAAGCTGCGATGCTGACCG

CRISPR arrays and Neighbor proteins around NC_015707_2

CRISPR arrays

The CRISPR arrays of NC_015707_2

>merge|NC_015707|2|1151411-1152854|PILER-CR,CRISPRCasFinder,CRT
GTTTGGACACTACCTATGAGGAATGGAAACTTTTTTCAAAAATATACTTCGCAGTCGAAATTGACAGTTTGGACACTACCTATGAGGAATGGAAACGCTAAAATATTCGGGACAGCGGGCTTTGCTGTTCCAGTTTGGACACTACCTATGAGGAATGGAAACACGTCTAAAACCTTGTGCATTGCTAGTCTATCCGTACGTTTGGACACTACCTATGAGGAATGGAAACTTTGTGCATCTTCCGGCAGTTCTGTTGCTCCCTCTGTTTGGACACTACCTATGAGGAATGGAAACATGATTTTAATAAAGGGGGGGTTTGATGGGTAAAAAACCGTTTGGACACTACCTATGAGGAATGGAAACATGGTGGGCGCAAAAAGAAGGAGGGATTTACATGATAGTTTGGACACTACCTATGAGGAATGGAAACGGTGTACTAGCCAACAGGCACGGCATCTGGCAGAGTTTGGACACTACCTATGAGGAATGGAAACTCTTTTTCTGATTCGCCGTTGATACTAACTCTGATTAGTTTGGACACTACCTATGAGGAATGGAAACTGTATTTCACGGATCTATGCAGCTTCAGATGGATCGTTTGGACACTACCTATGAGGAATGGAAACGCCTGCAAGGCGTTCAAGTTGACGCTAAGACCTATCTCGTTTGGACACTACCTATGAGGAATGGAAACATGTCAATCGCCTTCGCTGCGGCACGTAACGGAGACATACCCGTTTGGACACTACCTATGAGGAATGGAAACCCGTTAACATACTTAATCGTAAACGGTGGATTCTCCCCAGTTTGGACACTACCTATGAGGAATGGAAACTCCGCTGCCCCTTCTTTGCCTGCAGGTTCTTCTCTATATCCGTTTGGACACTACCTATGAGGAATGGAAACCCTTATTCGTGATGTTTAATCTTTCCAACACTGAAGGTTTGGACACTACCTATGAGGAATGGAAACTCTGGCTTAAAAGCAAAGTGATGAGTTCTCTGCCAGTGTTTGGACACTACCTATGAGGAATGGAAACGCTTCAAGCAGGTGGACTACAACCCGCTTGTTAAAGGTTTGGACACTACCTATGAGGAATGGAAACATGCCTTGTGTATTCCAACAATTCCGCATAGAAAATCGTTTGGACACTACCTATGAGGAATGGAAACTCCGAATGCGGATTATAGTATCTCTGTTTTCTTAGACATGTTTGGACACTACCTATGAGGAATGAAAACATTAATGGGATCTACGTAAATGGCATTGGCCCGCTTAGTTTGGACACTACCTATGAGGAATGGAAACTTGCGGCACGGCGGCAAATTTCGTCATAGTTCATTTGTTTGGACACTACCTATGAGGAATGGAAACTCGTCATACCCTGCGCCGTCGTAAGCTGCGATGCTGACCGGTTTGGACACTACCTATGAGGAATGGAAAC

>NC_015707|2|2|1151411-1152854|PILER-CR
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTTTTCAAAAATATACTTCGCAGTCGAAATTGACA
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTAAAATATTCGGGACAGCGGGCTTTGCTGTTCCA
GTTTGGACACTACCTATGAGGAATGGAAAC	ACGTCTAAAACCTTGTGCATTGCTAGTCTATCCGTAC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTGTGCATCTTCCGGCAGTTCTGTTGCTCCCTCT
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGATTTTAATAAAGGGGGGGTTTGATGGGTAAAAAACC
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGGTGGGCGCAAAAAGAAGGAGGGATTTACATGATA
GTTTGGACACTACCTATGAGGAATGGAAAC	GGTGTACTAGCCAACAGGCACGGCATCTGGCAGA
GTTTGGACACTACCTATGAGGAATGGAAAC	TCTTTTTCTGATTCGCCGTTGATACTAACTCTGATTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGTATTTCACGGATCTATGCAGCTTCAGATGGATC
GTTTGGACACTACCTATGAGGAATGGAAAC	GCCTGCAAGGCGTTCAAGTTGACGCTAAGACCTATCTC
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGTCAATCGCCTTCGCTGCGGCACGTAACGGAGACATACCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CCGTTAACATACTTAATCGTAAACGGTGGATTCTCCCCA
GTTTGGACACTACCTATGAGGAATGGAAAC	TCCGCTGCCCCTTCTTTGCCTGCAGGTTCTTCTCTATATCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CCTTATTCGTGATGTTTAATCTTTCCAACACTGAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	TCTGGCTTAAAAGCAAAGTGATGAGTTCTCTGCCAGT
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTTCAAGCAGGTGGACTACAACCCGCTTGTTAAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGCCTTGTGTATTCCAACAATTCCGCATAGAAAATC
GTTTGGACACTACCTATGAGGAATGGAAAC	TCCGAATGCGGATTATAGTATCTCTGTTTTCTTAGACAT
GTTTGGACACTACCTATGAGGAATGAAAAC	ATTAATGGGATCTACGTAAATGGCATTGGCCCGCTTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGCGGCACGGCGGCAAATTTCGTCATAGTTCATTT
GTTTGGACACTACCTATGAGGAATGGAAAC	TCGTCATACCCTGCGCCGTCGTAAGCTGCGATGCTGACCG
GTTTGGACACTACCTATGAGGAATGGAAAC

>NC_015707|2|2|1151411-1152854|CRISPRCasFinder
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTTTTCAAAAATATACTTCGCAGTCGAAATTGACA
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTAAAATATTCGGGACAGCGGGCTTTGCTGTTCCA
GTTTGGACACTACCTATGAGGAATGGAAAC	ACGTCTAAAACCTTGTGCATTGCTAGTCTATCCGTAC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTGTGCATCTTCCGGCAGTTCTGTTGCTCCCTCT
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGATTTTAATAAAGGGGGGGTTTGATGGGTAAAAAACC
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGGTGGGCGCAAAAAGAAGGAGGGATTTACATGATA
GTTTGGACACTACCTATGAGGAATGGAAAC	GGTGTACTAGCCAACAGGCACGGCATCTGGCAGA
GTTTGGACACTACCTATGAGGAATGGAAAC	TCTTTTTCTGATTCGCCGTTGATACTAACTCTGATTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGTATTTCACGGATCTATGCAGCTTCAGATGGATC
GTTTGGACACTACCTATGAGGAATGGAAAC	GCCTGCAAGGCGTTCAAGTTGACGCTAAGACCTATCTC
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGTCAATCGCCTTCGCTGCGGCACGTAACGGAGACATACCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CCGTTAACATACTTAATCGTAAACGGTGGATTCTCCCCA
GTTTGGACACTACCTATGAGGAATGGAAAC	TCCGCTGCCCCTTCTTTGCCTGCAGGTTCTTCTCTATATCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CCTTATTCGTGATGTTTAATCTTTCCAACACTGAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	TCTGGCTTAAAAGCAAAGTGATGAGTTCTCTGCCAGT
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTTCAAGCAGGTGGACTACAACCCGCTTGTTAAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGCCTTGTGTATTCCAACAATTCCGCATAGAAAATC
GTTTGGACACTACCTATGAGGAATGGAAAC	TCCGAATGCGGATTATAGTATCTCTGTTTTCTTAGACAT
GTTTGGACACTACCTATGAGGAATGAAAAC	ATTAATGGGATCTACGTAAATGGCATTGGCCCGCTTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGCGGCACGGCGGCAAATTTCGTCATAGTTCATTT
GTTTGGACACTACCTATGAGGAATGGAAAC	TCGTCATACCCTGCGCCGTCGTAAGCTGCGATGCTGACCG
GTTTGGACACTACCTATGAGGAATGGAAAC

>NC_015707|2|2|1151411-1152854|CRT
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTTTTCAAAAATATACTTCGCAGTCGAAATTGACA
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTAAAATATTCGGGACAGCGGGCTTTGCTGTTCCA
GTTTGGACACTACCTATGAGGAATGGAAAC	ACGTCTAAAACCTTGTGCATTGCTAGTCTATCCGTAC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTGTGCATCTTCCGGCAGTTCTGTTGCTCCCTCT
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGATTTTAATAAAGGGGGGGTTTGATGGGTAAAAAACC
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGGTGGGCGCAAAAAGAAGGAGGGATTTACATGATA
GTTTGGACACTACCTATGAGGAATGGAAAC	GGTGTACTAGCCAACAGGCACGGCATCTGGCAGA
GTTTGGACACTACCTATGAGGAATGGAAAC	TCTTTTTCTGATTCGCCGTTGATACTAACTCTGATTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGTATTTCACGGATCTATGCAGCTTCAGATGGATC
GTTTGGACACTACCTATGAGGAATGGAAAC	GCCTGCAAGGCGTTCAAGTTGACGCTAAGACCTATCTC
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGTCAATCGCCTTCGCTGCGGCACGTAACGGAGACATACCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CCGTTAACATACTTAATCGTAAACGGTGGATTCTCCCCA
GTTTGGACACTACCTATGAGGAATGGAAAC	TCCGCTGCCCCTTCTTTGCCTGCAGGTTCTTCTCTATATCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CCTTATTCGTGATGTTTAATCTTTCCAACACTGAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	TCTGGCTTAAAAGCAAAGTGATGAGTTCTCTGCCAGT
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTTCAAGCAGGTGGACTACAACCCGCTTGTTAAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	ATGCCTTGTGTATTCCAACAATTCCGCATAGAAAATC
GTTTGGACACTACCTATGAGGAATGGAAAC	TCCGAATGCGGATTATAGTATCTCTGTTTTCTTAGACAT
GTTTGGACACTACCTATGAGGAATGAAAAC	ATTAATGGGATCTACGTAAATGGCATTGGCCCGCTTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGCGGCACGGCGGCAAATTTCGTCATAGTTCATTT
GTTTGGACACTACCTATGAGGAATGGAAAC	TCGTCATACCCTGCGCCGTCGTAAGCTGCGATGCTGACCG
GTTTGGACACTACCTATGAGGAATGGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015707.1|WP_013932465.1|1163240_1164155_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|274210
NC_015707.1|WP_013932464.1|1161148_1163209_+|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_015707.1|WP_013932446.1|1141127_1142006_+|CRISPR-associated-protein-Csx14	csx1	cd09741_csx1_CAS-III	gnl|CDD|187872
NC_015707.1|WP_013932452.1|1147135_1149328_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|273707
NC_015707.1|WP_013932449.1|1143968_1145471_+|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_015707.1|WP_013932463.1|1160061_1161165_+|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|187879
NC_015707.1|WP_041446409.1|1156329_1157433_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_015707.1|WP_013932453.1|1149348_1149846_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_015707.1|WP_013932450.1|1145463_1146432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl|CDD|274215
NC_015707.1|WP_013932462.1|1157419_1160047_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl|CDD|187810
NC_015707.1|WP_013932451.1|1146428_1147148_+|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl|CDD|187824
NC_015707.1|WP_041446620.1|1155469_1155862_+|DUF86-domain-containing-protein	unknown	unknown	gnl|CDD|378048
NC_015707.1|WP_013932447.1|1142021_1143164_+|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_015707.1|WP_013932454.1|1149859_1150855_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|274695
NC_015707.1|WP_013932466.1|1164151_1164583_+|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl|CDD|378242
NC_015707.1|WP_013932448.1|1143177_1143927_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl|CDD|224499
NC_015707.1|WP_013932455.1|1150882_1151146_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_015707.1|WP_169310350.1|1153676_1153847_-|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932456.1|1153246_1153426_-|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_169310351.1|1154135_1155470_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015707.1|WP_013932464.1|1161148_1163209_+|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.3e-68	224.7	3.5
NC_015707.1|WP_013932446.1|1141127_1142006_+|CRISPR-associated-protein-Csx14	csx1	cd09741_csx1_CAS-III	6.7e-45	148.0	0.5
NC_015707.1|WP_013932452.1|1147135_1149328_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	1.3e-79	262.5	0.5
NC_015707.1|WP_013932449.1|1143968_1145471_+|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	3.8e-133	439.4	0.0
NC_015707.1|WP_013932465.1|1163240_1164155_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	1.2e-82	272.5	0.2
NC_015707.1|WP_041446409.1|1156329_1157433_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	7.9e-37	121.8	2.0
NC_015707.1|WP_013932453.1|1149348_1149846_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	8.2e-48	157.3	1.0
NC_015707.1|WP_013932450.1|1145463_1146432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	1.9e-68	225.6	0.0
NC_015707.1|WP_013932462.1|1157419_1160047_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	5.7e-104	343.4	14.5
NC_015707.1|WP_013932451.1|1146428_1147148_+|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	8.1e-18	59.6	0.0
NC_015707.1|WP_013932447.1|1142021_1143164_+|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	3.8e-42	138.4	0.0
NC_015707.1|WP_013932454.1|1149859_1150855_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1.4e-131	433.1	9.1
NC_015707.1|WP_013932466.1|1164151_1164583_+|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	3.3e-36	119.1	0.3
NC_015707.1|WP_013932448.1|1143177_1143927_+|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	3.3e-48	159.4	1.7
NC_015707.1|WP_013932455.1|1150882_1151146_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	9.9e-29	94.2	0.1
NC_015707.1|WP_013932463.1|1160061_1161165_+|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.2e-70	233.5	0.0
NC_015707.1|WP_169310351.1|1154135_1155470_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	2.7e-36	120.1	3.7

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015707.1|WP_013932464.1|1161148_1163209_+|putative-CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	3.60824e-28
NC_015707.1|WP_013932446.1|1141127_1142006_+|CRISPR-associated-protein-Csx14	gnl|CDD|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	3.06749e-43
NC_015707.1|WP_013932452.1|1147135_1149328_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	4.64664e-69
NC_015707.1|WP_013932465.1|1163240_1164155_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	6.40838e-81
NC_015707.1|WP_041446409.1|1156329_1157433_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.85838e-28
NC_015707.1|WP_013932453.1|1149348_1149846_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.39822e-61
NC_015707.1|WP_013932450.1|1145463_1146432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl|CDD|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	3.33305e-69
NC_015707.1|WP_013932462.1|1157419_1160047_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	3.80027e-78
NC_015707.1|WP_013932451.1|1146428_1147148_+|CRISPR-associated-protein-Cas5	gnl|CDD|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.0378e-14
NC_015707.1|WP_041446620.1|1155469_1155862_+|DUF86-domain-containing-protein	gnl|CDD|378048	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like. Nucleotidyltransferases (EC 2.7.7) comprise a large enzyme family with diverse roles in polynucleotide synthesis and modification. This domain is structurally related to kanamycin nucleotidyltransferase (KNTase) and forms a complex with HI0073, a sequence homolog of the nucleotide-binding domain of this nucleotidyltransferase superfamily.	1.18393e-34
NC_015707.1|WP_013932447.1|1142021_1143164_+|putative-CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	4.64834e-39
NC_015707.1|WP_013932454.1|1149859_1150855_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.43615e-162
NC_015707.1|WP_013932466.1|1164151_1164583_+|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl|CDD|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	8.98388e-47
NC_015707.1|WP_013932448.1|1143177_1143927_+|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.74495e-42
NC_015707.1|WP_013932455.1|1150882_1151146_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.36294e-30
NC_015707.1|WP_013932463.1|1160061_1161165_+|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl|CDD|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.65554e-67
NC_015707.1|WP_169310351.1|1154135_1155470_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.07503e-23

Protein sequences

>NC_015707.1|WP_013932455.1|1150882_1151146_+|CRISPR-associated-endonuclease-Cas2
MYIILVYDVNVKRVNKVLKIARKYLTWVQNSVLEGELTEATLKKLQRDLSKVIDPNEDALIFYKLPDGKNLSRETIGTQKGKETWVL
>NC_015707.1|WP_013932454.1|1149859_1150855_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MAKKTLYIFASGRLQRKDNTICAETEEGKKYFPVESVRDIFIMGEVDLNKKFLEFLEEKEIVAHFFGYYGNYVGTFYPREHNNSGYMIVKQVEHYLNPSLRLKLARKFVEGSLENMLQVLKYYEKRKKNLEEYCEKVSSLLRTLENCNSIEELMAIEGNARRCYYESFNVILEDTPFSLAKREKRPATDPINALISYGNSLVYMKLLTEIYMTHLDPRIGYLHTTNFRSFTLNLDVAEIFKPILADRTLFSILGKRMIDEEGFEYKGEMCILKEKTAKKYVQEFEEKLSTTLYHRELKRNISYQNLMRMELYKLEKHLMGEKEYEPFVSRW
>NC_015707.1|WP_013932453.1|1149348_1149846_+|CRISPR-associated-protein-Cas4
MTPKITGILVNCYLICPRKVWLVSRQIGPSKDNIHLQLGEILRQESYERELREVHIEHLALDVVIIRDENLIIAEVKKSSKAKKAARMQLAFYLYELKRMGIEAEGELRFPEERKRERLILDESLQKEIEIVMEDIKQLLKSEKPPQPKWIGYCRNCAHSEFCWA
>NC_015707.1|WP_013932452.1|1147135_1149328_+|CRISPR-associated-helicase/endonuclease-Cas3
MDVLDVLAKPDVPLIKHSSEVVQLAQKIAKILIIENGISQRAILACAFHDIGKSTHSFQKFVRKETKKAYPHALASLPFIMLVESILFDENLLATAAVLTHHSPFTPMLYKGFESSSKEPDYLDKEIIKKLLAQLLQEINMRLPNSQTVDEITQQALTLGKNPAAILDTQITYQDGDTETIRLKLMNLPIDDFSNVKAILQLSDWLVSSSSLSVRNLFLGKSNAWIEKIKSTYNLRNFQRKVLSSPGYVLWLKAPTGTGKTEALLLWARDSKKLIYLLPTQATVNAMWKRLAKLFGKRKVSISHGMSGYLLRSQEKDEQEYWNEKLLAKVFGKPVTVATLDQFLLAHLNTRHWEIQRTLIRNSTVIIDEIHCYDGYTLGLLSQALEFEKPLKIAFASATMPEFLKNILPQGQEIEAEKKLWNRRRHFVELVENPLEDCVDEILRYANQGKNVLVVCNTVKKAQQMYQNISQRYRKVKLLHARFIYKDRLKKERHLIENQNKMRGVILVSTQVVEVSLNISFDVLFTQIAPIDALVQRLGRVNRFPSRSNQAAPVFVSLYEDEDSKRIYDAEILQESRQITMNLPKTPTEREWAEAADQLYKAIWESQTFQQEFNEGKRTLYELRKMLGCYTIDLRDEDMRRRFSTRKGQLSIDVLPAKFFDEARKLMETNQSWQIVEYLVPVPIGWLYAYKDWFQPISDLSCFQVDLEYDQKLGLLPPSKDKMPSNMEIL
>NC_015707.1|WP_013932451.1|1146428_1147148_+|CRISPR-associated-protein-Cas5
MKALWVKVIAQACSFRPPLDHVYQRTLPLPPPTTILGFAGAALGLEDKAIWSQESPLLNVKVSALLLNKPGFAKDMWKILKIDNYKISERSPYFREMLFNARYMLVYGSADEDFLKRLKEAILDPVYALSLGREDELVLVEECDIAELQVGGTTFYGTALAGDISKMKFHWIPKGGVKFEPPICENMPVAFEVDKDGRRYPRSKQLLTFLPYDLHVVLNEPVNSYTLEILKGRNFTWMS
>NC_015707.1|WP_013932450.1|1145463_1146432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNKPKAVCIGYLSKVSVGNVNSSHTEGNVIVAKKVTLPDGNFIPYYSGQCIRRIIKDRFEDFSLEVSDLAAKVENKQVLPPVRPWEFIDEDLFGYMEPGGRKRTSPVRVSAAIGLFQYQGDRDLGTRNFQRFGLEASEGGNMYETEVYANLFRGNILVELDRLGVFSDLEIGEEAGKHLKDLERVEKNGRIIWVLPKEKRVERLKWLLEAVKTLWGGGRTARLLSDLSPKFFAYAKLTTKHPVFLESIEVKYSQGKYELILDPLLSTVKKFGDYADRFIFGFESGFLSNENDIRKAFSEHNKVTVCHIHEAFEEAKKDVESI
>NC_015707.1|WP_013932449.1|1143968_1145471_+|hypothetical-protein
MNTNPPIKVDYTPTGNFWIDNGLVHLLIKKGPGIYPANDLLRELRNDLLQPTGKMDQYYDQNTKQLVTYPKLGWIAPASHFIKVNDTSSNKISVAGKEYRTAPANPELNLKYKSKIADCEICGTHGLVVDTSMWIFPMVAAVDKFGNFYSGSKKGTLLCPRCAVAGVACYLSLLWVVQGRQTLHIFLFHGDLKDLELLRKEVIDYLKLSESKAGNVKLPFYGDYPHETILALLLELFSHIGSSKTLSDERRKILASIFGVETAAVGSKGSKLSLYCLSGSIEGTRQVFKARHLSNITQLHALYKLYEGWIAALADSQNPKQALTQVFRQFTVSQKQREETIWREKIAWAILEFSDPLPYVEDYLFEGKLRSDNKTPLVWGTVNVIDYYCKEVLSMEEKLIKVLMGFGSNLGKQSAEKKDMSVLYALRNAKNVEEYLKVLNDAQFRFEMMVPREIVELQEESKIFNTPWVRVKTLLSIYAMNSYLRTLKGGNEGQGGEKDE
>NC_015707.1|WP_013932448.1|1143177_1143927_+|CRISPR-associated-endoribonuclease-Cas6
MRLTITLQSDEKINLPVNYNHMIQAMIYNVMDDPTFRAYLHEHGFELGKRSFKMFTFSWLMGKSVFEESTKRIIFEPPVKLVVCSPMNSIMRELGSGLLKKKYIRLGENLLQISEIATMNNDVNESRIRVKMLSPIVVYSTFEKPDQNKQTHYYSPFEERFNELVKQNLEKKYFIVYGENLSEDGFLIEPVKVGGRHFVITSYKNTWIKGWMGEYELRGNPKLLKLALDAGLGSKNSLGYGCCEVVQGK
>NC_015707.1|WP_013932447.1|1142021_1143164_+|putative-CRISPR-associated-protein
MKAAKLIFMVSTVGTSLLTNAAVKDQQLQSLLRETANLKEKDLKEDQKEVLQKLIDQVGKRLELSTVQEIKRMSAELNGILSYFNNQKPDPTSIHVLMSTDTYQGISTAKLVQERLRQFGVENVQIFTPPNFDVSTTKNFSEGMKAIVKWCYEVAKGYREEGYHVVFNLVGGFKSFQSVMNTLGMFYADEVIYIFEAPSADLIRIPKLPIKMEDQPILKEKVVLFAMMEHCYIAEPHEVSNIPEIYLEKDQNGRATLSEWGLLVWNENKYEILKNMELEKLTFPKIVYEKSFLKDFEQIANSKQKVDLILTLAKVSVNYSEKGIAALKADPGLLYENYKNREDRLGHFRINEGWRVSCEERNGMLFLRHVGTHDYVNRNP
>NC_015707.1|WP_013932446.1|1141127_1142006_+|CRISPR-associated-protein-Csx14
MLARKKRGGKSSVLIATLGTEPQVVTITLDKLLEQKYLVEKVVVIYTSDNNVSNGLATLKQEFSQNENYSNITLTCEPVQHNNVILSDFTSEEALNALFRTIYKVVRDEKKSGRIVHLSISGGRKVMGVVATVVAQLLFGEEDKLWYLITKNWKAGCERKFHLEQHEEAWLIDMPVIRWSEADTFMEQVAQLNDPKEISIWYKKLTKKANQQKLSEFVEQHLGERERQLLKLVCKGLSNEEIAREMYIEKQTVANHLQNINNKLRDFLGKEDMKINRKVLITMFMPIFESED
>NC_015707.1|WP_013932456.1|1153246_1153426_-|hypothetical-protein
MEILGYALFGILLIILIRGPIGRLLGDLTNGDWESIKKGLWWKNYWRDVKAAREEQNKK
>NC_015707.1|WP_169310350.1|1153676_1153847_-|hypothetical-protein
MDTSLKLRFTVDKCKVFVNLDNLVLATDKGSCVIMPEGYYPNKAITLNNLKESTEI
>NC_015707.1|WP_169310351.1|1154135_1155470_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTRVKTVSFLCEVITPLFMSGSNVQTFELRPSEIKGMMRFWWRAVKALDDKEKLREEETDIFGGIKPTNLKSPVSIRIIQNLNDTSEQKAVKLGENIQGRINQRAGIKYLFYSTFSLKFAGERLVRKYLQPGTKFELILSCRDDDYEKFQKVLAAFWLTVNLGGLRTRSKRGAGDIRILQPKELKLREETLSFVKDDDNNVTKWIVDNFYVVRKIINGCKDFCSSYSNLSLSRFLISKESFNSWEDALDDLGKKYIDFRRKNSSKKPQIGVFGLPVNYRRTRITWKKVNDQNEDSDHDRRTSPLIFKVFRFGNKYRWMVLRMSGEFLPEGSVLNLSGRTQKPDFSLIDEFWNILKEHAVEDILSVPETLNKLAAEIKKELDARKVILFGSRARGDATKKSDIDIAVVTGKAVSNFEKIANVDLVNLNKVSNDLREKIIKEGIEL
>NC_015707.1|WP_041446620.1|1155469_1155862_+|DUF86-domain-containing-protein
MRERVQQYFTQFQNALRNLEEAVQYAKTDIEIDGTIKRFELCYELSWKLIKEYLADLGLICKNPRDCFRLAYQNGLIANDQIWMEMIDARNRLVRTYSAEESREMFIDIKEKFLHELKYLYDKILNAGQI
>NC_015707.1|WP_041446409.1|1156329_1157433_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MKRLSFECEIITPMFMSGSDTMTAELRPSEIKGMMRFWWRAARALDDLSSLKKEETEIFGGMDQGNTKSLKSSVSVIIERESLKAGNNILDLINSQQGNNYQGIKYLLYSTFSLKSGGKRLIKGYLKPGSRFKLILSFRDDNDEKIKAVLASFWLAMYLGAFGSRSRRGAGSVNVISHDFAFDFLDFNPKGSTKEELENWYRKNLAEIKKVIQPAKTGRYSNLSKAKIYIADPKPTWIDALEEVGIVFKEYRSKNKGKIFDMAAFGMPIHHNQFSVRLVPYDQKGRISDRFASPLIIKIVRSNGKYFPVLIHLTVDPIFAGKESKDGKRWMTATVNERKKLNFSVIDEFTKEFTKFLNAVVIEYEKL
>NC_015707.1|WP_013932462.1|1157419_1160047_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MKNCERILKGFLHDPIDKVLRIPGHVGRAKMCMEILGISGFEEAKDSDMIAAAMERTLLEDTEKIQPFTEIRHPLCEGKLDVPEGFPEGIPEILEDVLKKIKYLQPEEMVYWLYRNYIDEVVAKLKVKGDVELSKYMPILPADTRVPDHSIFEHLKIASAINSYEKYQDNSLFFFSIGPVQSFISQSRKTQDLYNSSYLLSYLTFVATWVVAEEYGPMSIIYPELYGQPLFDWFLEKKKQIEVKNSLSSLVDLATIPNKFVAILPTSKQEELEDIVKKCEKEVREKWNDIVEYVLDNFLTSKPQQEIIDRQIKDFPEIYWVIVPWRINGKEVQIEAFRELKIETETIEKIIKTLKKQSLPVNVGIYYPLIYSLGEKFLKARKQLRNFVQTEEYGKKCTICGEREGVVSQGNVKPDKKHILKDKECLCVNCFAKRMLDEYLEKKEFPGATFGGFPSTAEICLADFREKILSSEDCRTAYEEFSKEFSKLLSVRIVKDSVVPKLKDDFDKIAENIYGEWLFEENLTQRKIKEELGEVERIEKNLPELRERLKELHKKVGKPSPYYAVIMLDGDNMGKWLSGELLPDIRYSYNTEVYESFSDSFKNNLPERKLLTPAIHASISHALRNYAIEFVKPIVEKEHLGKLVYAGGDDVLAFVNLKDLIPVLRKLRAAFSGQVEIVDGRIQVKSDNKTGFVEKDDKLILTMGPNATASCGVVIAHYKEPLKYVLNKVREMEEKAKQNDRNSFAINLIRRGKERIIVSKWFVEDNKTDVLSELENILRYFKEEKLSKTFVSKVYDSVVKTVNSTNGQLRLRGKMLEYELKRLIKRSSDPNKITNEEIESLAEKLHKLTYASFHYNFGSFICFIYLAAFLSDYLL
>NC_015707.1|WP_013932463.1|1160061_1161165_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MVINIKPVDTLFFRNSKPFEVGGENWAEIVFPPLPRTVYGALRTYLILQKGSIEEFKQGKFEEDLGTIDTYGKFKLKGIFLNKDGTLYFKIPYDSVLIEGKDKLKTLELMEKPKLMISNYPLEYVLFYRGGEKVEEPSGWIDTYELKKYLTGKDATVSKNSFYKISEKIGIARDEKSLSSKESYIYKIPLVQLERDVCISAVLEDSLRCLFDKEVDMLQLGGERKSAVFEIDKTDIDDDLNDLKDLNVDLKDGFFKVCLLTPTVFKKGWLPSWIDEATKEGKIGKLKVKLVAAATGRYIKVGGWDLARNKPKPLKKAVPAGAVYYFKLLEGDEKDVFETFHFKNISDEFSEEGFGFSVVGVVNGDGR
>NC_015707.1|WP_013932464.1|1161148_1163209_+|putative-CRISPR-associated-protein
MAMEDKIFVITSVGLSLVENYSKNGGTAYLSSDLLQKSKSENCHIYKDEIEKRDIKSWISKLEEKECINCCAEIKSLEKIVRRLENKSSNQALEVVLIKSDTIGCHISVEVLLKVLPDVLGSVLQENIQLQISKKFIKDLNLENPKTFRQGIKNLVCEVSSFFDKGKLVFDITGGYKSVIAVLSILAQINQSPAFYVYEDTDCLIEIPPAPIRPDLAFFEKYKELFQKDGIVPENEIPNGFPEELLDILDENENGKFYYLNPFAKELFKKCGKYALDSKSFLETYEHSSYEEIERIITVVGSSVFERNELLGKDDIEKAERSPANCEERECKKLEKKLKDKQNENLNCAELDSIMTILKKNNIDHSRVEIYLLYTDTLISKLAAEYVKNRLEKMGIKSKSSVIQGLRIDDSDKFIKMGLVNLLNEVYKIADRNWKKVCFNITTGFKSIVPYLTFLAMVNKSRIFYKFELADELFQIPPLPISIDWSLIKNNEKNLLEVEFGDCCISKQSYEELRSLVEKSGDKYVFTGVGRILWKKYLEINDIHALYLSDSALKKYEKLKKSDENHSTAFEKSLKELLKELHNVGENFKSRDKLCHDVGCEELKKKGFCIFKDEKERLQLRIIWKCEKTELYNTYKVYVNEFYIGKEVHNAENEYVNKCRESAEKILKVGGYRLCKLCKDGLIVLT
>NC_015707.1|WP_013932465.1|1163240_1164155_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MWKKRCAMFIACETSVHPGSGSSIGIVDLPIQREVHTNFPKIESTSLKGCLRETFRRMQKNSFAIVEEIFGPEEIGEEAYAGAISITDAKLLLFPVKSVKGVFAYVTCPLTLNRFKKEFSSILGGKVFENVQIKESTVCMGSDLLVDSKSIILEEFSFDVGEDEGTTNIAKELSNLVFPNDPAYKFWREKLQKSLVILPDNDFRDFVTNSTEVVTRIKIDTTTGTVQRGALWTEEYLPQDTILYSFVLASEPRKKGATLKDENEVFEKFKVIDNLVMQIGGNQTVGKGLVRVKLYESNQEGDGK
>NC_015707.1|WP_013932466.1|1164151_1164583_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MTSLIEQDKDRKSKIEFGRAEFAYKCVENVIEKSKDIGKDLAEDYKSYSKKLPMMILTNGLAQALAFVFSKKKETNAWGMLYKHIKEYLCNHSIRKFDIGNEELTKWIISCDKETYRAATKEVLAFLSWVKRFAEGMIEDSEV

Crispr_ID: NC_015707_3

• CRISPR_ID: NC_015707_3
• CRISPR_location: 1165766-1167042
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 19 spacers
• Cas_protein_info: cmr6gr7,cmr5gr11,cmr4gr7,csm6,cmr3gr5,cas10,cmr1gr7,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1

Consensus repeat of NC_015707_3

Consensus_repeat	Method
GTTTGGACACTACCTATGAGGAATGGAAAC	PILER-CR
GTTTGGACACTACCTATGAGGAATGGAAAC	CRISPRCasFinder
GTTTGGACACTACCTATGAGGAATGGAAAC	CRT

spacers of NC_015707_3

>3.1|1165796|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTGTATACACAAGTGATGAAGGGTCTGGATATTGT
>3.2|1165862|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CATTCATGCTTTCTAGATATTACAAATCCCACTACA
>3.3|1165928|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACTTGAACGCCTTGCGGGCAGACTAAGAGAATATCC
>3.4|1165994|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCTCGTTTGCTTCTTCAAGCAGTTTTGCGGTGATTGC
>3.5|1166061|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GAGGCTTTTTCGGCTCAACTGGCAACGTCGGTTCAA
>3.6|1166127|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AATGGGAGGAACTGTATACTACTGCGACACAGATTC
>3.7|1166193|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTGTGAATTCTTATAACATCACCTTCGATCCACTCTA
>3.8|1166260|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGGGTATGTGGGCGCAAGTTTTGAATCAAAAGACTTA
>3.9|1166327|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATTTCCGTTTGCGTGTGTTCGCCTGTCACTGTTACGA
>3.10|1166394|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACTACGTAACATCTACACGTGTGTTCACGTTCACCTC
>3.11|1166461|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCTTTTTGACTTATTGCACTGACGTTTGTGTTGATT
>3.12|1166527|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CTTTCAACATAATTGGTTGTGATGTATCAGCACCAA
>3.13|1166593|39|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CAGCGTTTATTCGATGAAAACTAAGAAGTATTCTATACG
>3.14|1166662|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACGCTTGCCTCTCTGTGTCTGAGGCCAACTGCAATCAA
>3.15|1166730|36|NC_015707|CRISPRCasFinder,CRT
TTTCCAAGTTTAGATTTAGCGAGTCTGAACAAATGT
>3.16|1166796|37|NC_015707|CRISPRCasFinder,CRT
GTTGCTTTGCAGGGCAGACATATGTCTGCCCATTCCT
>3.17|1166863|35|NC_015707|CRISPRCasFinder,CRT
GCCTACAACAGCAACTTTCACTCCACTCACCTCCC
>3.18|1166928|23|NC_015707|CRISPRCasFinder,CRT
CCTATCCAGACTCTGTAGTGCGT
>3.19|1166981|32|NC_015707|CRT
AAGCCTTAGGGGCTTGGGAGGCTGTTTCTGCG

CRISPR arrays and Neighbor proteins around NC_015707_3

CRISPR arrays

The CRISPR arrays of NC_015707_3

>merge|NC_015707|3|1165766-1167042|PILER-CR,CRISPRCasFinder,CRT
GTTTGGACACTACCTATGAGGAATGGAAACTTTGTATACACAAGTGATGAAGGGTCTGGATATTGTGTTTGGACACTACCTATGAGGAATGGAAACCATTCATGCTTTCTAGATATTACAAATCCCACTACAGTTTGGACACTACCTATGAGGAATGGAAACACTTGAACGCCTTGCGGGCAGACTAAGAGAATATCCGTTTGGACACTACCTATGAGGAATGGAAACGCTCGTTTGCTTCTTCAAGCAGTTTTGCGGTGATTGCGTTTGGACACTACCTATGAGGAATGGAAACGAGGCTTTTTCGGCTCAACTGGCAACGTCGGTTCAAGTTTGGACACTACCTATGAGGAATGGAAACAATGGGAGGAACTGTATACTACTGCGACACAGATTCGTTTGGACACTACCTATGAGGAATGGAAACTTGTGAATTCTTATAACATCACCTTCGATCCACTCTAGTTTGGACACTACCTATGAGGAATGGAAACTGGGTATGTGGGCGCAAGTTTTGAATCAAAAGACTTAGTTTGGACACTACCTATGAGGAATGGAAACATTTCCGTTTGCGTGTGTTCGCCTGTCACTGTTACGAGTTTGGACACTACCTATGAGGAATGGAAACACTACGTAACATCTACACGTGTGTTCACGTTCACCTCGTTTGGACACTACCTATGAGGAATGGAAACGCTTTTTGACTTATTGCACTGACGTTTGTGTTGATTGTTTGGACACTACCTATGAGGAATGGAAACCTTTCAACATAATTGGTTGTGATGTATCAGCACCAAGTTTGGACACTACCTATGAGGAATGGAAACCAGCGTTTATTCGATGAAAACTAAGAAGTATTCTATACGGTTTGGACACTACCTATGAGGAATGGAAACACGCTTGCCTCTCTGTGTCTGAGGCCAACTGCAATCAAGTTTGGACACTACCTATGAGGAATGGAAACTTTCCAAGTTTAGATTTAGCGAGTCTGAACAAATGTGTTTGGACACTACCTATGAGGAATGGAAACGTTGCTTTGCAGGGCAGACATATGTCTGCCCATTCCTGTTTGAACCCTACCTATGAGGAATGGAAACGCCTACAACAGCAACTTTCACTCCACTCACCTCCCGTTTGGACACTACCTATGAGGAATGGAAACCCTATCCAGACTCTGTAGTGCGTTTTTGAACCTTACCTATGAGGAATAGAAACAAGCCTTAGGGGCTTGGGAGGCTGTTTCTGCGTTTTGAATTTACACTGTTGGGAAGACAGAC

>NC_015707|3|3|1165766-1166729|PILER-CR
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTGTATACACAAGTGATGAAGGGTCTGGATATTGT
GTTTGGACACTACCTATGAGGAATGGAAAC	CATTCATGCTTTCTAGATATTACAAATCCCACTACA
GTTTGGACACTACCTATGAGGAATGGAAAC	ACTTGAACGCCTTGCGGGCAGACTAAGAGAATATCC
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTCGTTTGCTTCTTCAAGCAGTTTTGCGGTGATTGC
GTTTGGACACTACCTATGAGGAATGGAAAC	GAGGCTTTTTCGGCTCAACTGGCAACGTCGGTTCAA
GTTTGGACACTACCTATGAGGAATGGAAAC	AATGGGAGGAACTGTATACTACTGCGACACAGATTC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGTGAATTCTTATAACATCACCTTCGATCCACTCTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGGGTATGTGGGCGCAAGTTTTGAATCAAAAGACTTA
GTTTGGACACTACCTATGAGGAATGGAAAC	ATTTCCGTTTGCGTGTGTTCGCCTGTCACTGTTACGA
GTTTGGACACTACCTATGAGGAATGGAAAC	ACTACGTAACATCTACACGTGTGTTCACGTTCACCTC
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTTTTTGACTTATTGCACTGACGTTTGTGTTGATT
GTTTGGACACTACCTATGAGGAATGGAAAC	CTTTCAACATAATTGGTTGTGATGTATCAGCACCAA
GTTTGGACACTACCTATGAGGAATGGAAAC	CAGCGTTTATTCGATGAAAACTAAGAAGTATTCTATACG
GTTTGGACACTACCTATGAGGAATGGAAAC	ACGCTTGCCTCTCTGTGTCTGAGGCCAACTGCAATCAA
GTTTGGACACTACCTATGAGGAATGGAAAC

>NC_015707|3|3|1165766-1166980|CRISPRCasFinder
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTGTATACACAAGTGATGAAGGGTCTGGATATTGT
GTTTGGACACTACCTATGAGGAATGGAAAC	CATTCATGCTTTCTAGATATTACAAATCCCACTACA
GTTTGGACACTACCTATGAGGAATGGAAAC	ACTTGAACGCCTTGCGGGCAGACTAAGAGAATATCC
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTCGTTTGCTTCTTCAAGCAGTTTTGCGGTGATTGC
GTTTGGACACTACCTATGAGGAATGGAAAC	GAGGCTTTTTCGGCTCAACTGGCAACGTCGGTTCAA
GTTTGGACACTACCTATGAGGAATGGAAAC	AATGGGAGGAACTGTATACTACTGCGACACAGATTC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGTGAATTCTTATAACATCACCTTCGATCCACTCTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGGGTATGTGGGCGCAAGTTTTGAATCAAAAGACTTA
GTTTGGACACTACCTATGAGGAATGGAAAC	ATTTCCGTTTGCGTGTGTTCGCCTGTCACTGTTACGA
GTTTGGACACTACCTATGAGGAATGGAAAC	ACTACGTAACATCTACACGTGTGTTCACGTTCACCTC
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTTTTTGACTTATTGCACTGACGTTTGTGTTGATT
GTTTGGACACTACCTATGAGGAATGGAAAC	CTTTCAACATAATTGGTTGTGATGTATCAGCACCAA
GTTTGGACACTACCTATGAGGAATGGAAAC	CAGCGTTTATTCGATGAAAACTAAGAAGTATTCTATACG
GTTTGGACACTACCTATGAGGAATGGAAAC	ACGCTTGCCTCTCTGTGTCTGAGGCCAACTGCAATCAA
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTCCAAGTTTAGATTTAGCGAGTCTGAACAAATGT
GTTTGGACACTACCTATGAGGAATGGAAAC	GTTGCTTTGCAGGGCAGACATATGTCTGCCCATTCCT
GTTTGAACCCTACCTATGAGGAATGGAAAC	GCCTACAACAGCAACTTTCACTCCACTCACCTCCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CCTATCCAGACTCTGTAGTGCGT
TTTTGAACCTTACCTATGAGGAATAGAAAC

>NC_015707|3|3|1165766-1167042|CRT
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTGTATACACAAGTGATGAAGGGTCTGGATATTGT
GTTTGGACACTACCTATGAGGAATGGAAAC	CATTCATGCTTTCTAGATATTACAAATCCCACTACA
GTTTGGACACTACCTATGAGGAATGGAAAC	ACTTGAACGCCTTGCGGGCAGACTAAGAGAATATCC
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTCGTTTGCTTCTTCAAGCAGTTTTGCGGTGATTGC
GTTTGGACACTACCTATGAGGAATGGAAAC	GAGGCTTTTTCGGCTCAACTGGCAACGTCGGTTCAA
GTTTGGACACTACCTATGAGGAATGGAAAC	AATGGGAGGAACTGTATACTACTGCGACACAGATTC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGTGAATTCTTATAACATCACCTTCGATCCACTCTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGGGTATGTGGGCGCAAGTTTTGAATCAAAAGACTTA
GTTTGGACACTACCTATGAGGAATGGAAAC	ATTTCCGTTTGCGTGTGTTCGCCTGTCACTGTTACGA
GTTTGGACACTACCTATGAGGAATGGAAAC	ACTACGTAACATCTACACGTGTGTTCACGTTCACCTC
GTTTGGACACTACCTATGAGGAATGGAAAC	GCTTTTTGACTTATTGCACTGACGTTTGTGTTGATT
GTTTGGACACTACCTATGAGGAATGGAAAC	CTTTCAACATAATTGGTTGTGATGTATCAGCACCAA
GTTTGGACACTACCTATGAGGAATGGAAAC	CAGCGTTTATTCGATGAAAACTAAGAAGTATTCTATACG
GTTTGGACACTACCTATGAGGAATGGAAAC	ACGCTTGCCTCTCTGTGTCTGAGGCCAACTGCAATCAA
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTCCAAGTTTAGATTTAGCGAGTCTGAACAAATGT
GTTTGGACACTACCTATGAGGAATGGAAAC	GTTGCTTTGCAGGGCAGACATATGTCTGCCCATTCCT
GTTTGAACCCTACCTATGAGGAATGGAAAC	GCCTACAACAGCAACTTTCACTCCACTCACCTCCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CCTATCCAGACTCTGTAGTGCGT
TTTTGAACCTTACCTATGAGGAATAGAAAC	AAGCCTTAGGGGCTTGGGAGGCTGTTTCTGCG
TTTTGAATTTACACTGTTGGGAAGACAGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015707.1|WP_157723315.1|1173139_1173643_+|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	unknown
NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl|CDD|378186
NC_015707.1|WP_013932465.1|1163240_1164155_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl|CDD|274210
NC_015707.1|WP_013932463.1|1160061_1161165_+|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl|CDD|187879
NC_015707.1|WP_083815682.1|1175293_1175524_+|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|379311
NC_015707.1|WP_041446409.1|1156329_1157433_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_015707.1|WP_013932467.1|1164587_1165478_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_015707.1|WP_013932462.1|1157419_1160047_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl|CDD|187810
NC_015707.1|WP_013932477.1|1178433_1179072_+|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932464.1|1161148_1163209_+|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl|CDD|187873
NC_015707.1|WP_041446620.1|1155469_1155862_+|DUF86-domain-containing-protein	unknown	unknown	gnl|CDD|378048
NC_015707.1|WP_013932475.1|1175096_1175321_+|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|379311
NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl|CDD|187793
NC_015707.1|WP_013932466.1|1164151_1164583_+|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl|CDD|378242
NC_015707.1|WP_013932469.1|1169640_1170078_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl|CDD|367635
NC_015707.1|WP_169310350.1|1153676_1153847_-|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932470.1|1170088_1170910_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
NC_015707.1|WP_013932471.1|1170916_1171915_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl|CDD|187794
NC_015707.1|WP_013932468.1|1167201_1169637_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl|CDD|187811
NC_015707.1|WP_169310351.1|1154135_1155470_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015707.1|WP_157723315.1|1173139_1173643_+|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	1.5e-78	257.8	0.6
NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	5.1e-77	254.1	0.3
NC_015707.1|WP_013932465.1|1163240_1164155_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	1.2e-82	272.5	0.2
NC_015707.1|WP_013932463.1|1160061_1161165_+|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	1.2e-70	233.5	0.0
NC_015707.1|WP_041446409.1|1156329_1157433_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	7.9e-37	121.8	2.0
NC_015707.1|WP_013932467.1|1164587_1165478_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	2.7e-57	189.0	0.6
NC_015707.1|WP_013932462.1|1157419_1160047_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	5.7e-104	343.4	14.5
NC_015707.1|WP_013932464.1|1161148_1163209_+|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	1.3e-68	224.7	3.5
NC_015707.1|WP_013932469.1|1169640_1170078_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	3.1e-29	96.6	0.7
NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	2e-34	114.1	1.9
NC_015707.1|WP_013932466.1|1164151_1164583_+|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	3.3e-36	119.1	0.3
NC_015707.1|WP_013932470.1|1170088_1170910_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	4.8e-71	233.6	0.2
NC_015707.1|WP_013932471.1|1170916_1171915_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	2.3e-53	176.1	0.1
NC_015707.1|WP_013932468.1|1167201_1169637_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	5.3e-138	456.0	2.1
NC_015707.1|WP_169310351.1|1154135_1155470_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	2.7e-36	120.1	3.7

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein	gnl|CDD|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	9.45442e-75
NC_015707.1|WP_013932465.1|1163240_1164155_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl|CDD|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	6.40838e-81
NC_015707.1|WP_013932463.1|1160061_1161165_+|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl|CDD|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	1.65554e-67
NC_015707.1|WP_083815682.1|1175293_1175524_+|HEAT-repeat-domain-containing-protein	gnl|CDD|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	2.92787e-16
NC_015707.1|WP_041446409.1|1156329_1157433_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.85838e-28
NC_015707.1|WP_013932467.1|1164587_1165478_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	9.09252e-52
NC_015707.1|WP_013932462.1|1157419_1160047_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	3.80027e-78
NC_015707.1|WP_013932464.1|1161148_1163209_+|putative-CRISPR-associated-protein	gnl|CDD|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	3.60824e-28
NC_015707.1|WP_013932469.1|1169640_1170078_+|type-III-A-CRISPR-associated-protein-Csm2	gnl|CDD|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	6.00775e-28
NC_015707.1|WP_013932475.1|1175096_1175321_+|HEAT-repeat-domain-containing-protein	gnl|CDD|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	6.14675e-10
NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl|CDD|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.52475e-27
NC_015707.1|WP_013932466.1|1164151_1164583_+|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl|CDD|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	8.98388e-47
NC_015707.1|WP_041446620.1|1155469_1155862_+|DUF86-domain-containing-protein	gnl|CDD|378048	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like. Nucleotidyltransferases (EC 2.7.7) comprise a large enzyme family with diverse roles in polynucleotide synthesis and modification. This domain is structurally related to kanamycin nucleotidyltransferase (KNTase) and forms a complex with HI0073, a sequence homolog of the nucleotide-binding domain of this nucleotidyltransferase superfamily.	1.18393e-34
NC_015707.1|WP_013932470.1|1170088_1170910_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.15601e-81
NC_015707.1|WP_013932471.1|1170916_1171915_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl|CDD|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	5.33723e-41
NC_015707.1|WP_013932468.1|1167201_1169637_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.70402e-120
NC_015707.1|WP_169310351.1|1154135_1155470_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.07503e-23

Protein sequences

>NC_015707.1|WP_013932467.1|1164587_1165478_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MKKEDVIIRDEIKSVINKIDNFAIDNFALRFRFPEITESEKKGERKIKIEIINDIDKVGKSIFTSQKSIISDINERRKKSILTLEKFGYKVIEFTAKPCWRMVVGLGGTHPQETSMILHHVYGFPYIPGSSIKGVTRSMFILDWFEKVKKALVSENIDLSKFVAGLENYNPKSAKNQLPEYYDRELVDLYSNIFGTQEYQGKVIFFDAFPVGEINLVLDIINPHYPDYYSGNKPPADYQNPNPIKFLTVANTNFLFVLAGENEKIVIEAERYLKQALQAIGIGAKTSLGYGLFEIL
>NC_015707.1|WP_013932466.1|1164151_1164583_+|type-III-B-CRISPR-module-associated-protein-Cmr5
MTSLIEQDKDRKSKIEFGRAEFAYKCVENVIEKSKDIGKDLAEDYKSYSKKLPMMILTNGLAQALAFVFSKKKETNAWGMLYKHIKEYLCNHSIRKFDIGNEELTKWIISCDKETYRAATKEVLAFLSWVKRFAEGMIEDSEV
>NC_015707.1|WP_013932465.1|1163240_1164155_+|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MWKKRCAMFIACETSVHPGSGSSIGIVDLPIQREVHTNFPKIESTSLKGCLRETFRRMQKNSFAIVEEIFGPEEIGEEAYAGAISITDAKLLLFPVKSVKGVFAYVTCPLTLNRFKKEFSSILGGKVFENVQIKESTVCMGSDLLVDSKSIILEEFSFDVGEDEGTTNIAKELSNLVFPNDPAYKFWREKLQKSLVILPDNDFRDFVTNSTEVVTRIKIDTTTGTVQRGALWTEEYLPQDTILYSFVLASEPRKKGATLKDENEVFEKFKVIDNLVMQIGGNQTVGKGLVRVKLYESNQEGDGK
>NC_015707.1|WP_013932464.1|1161148_1163209_+|putative-CRISPR-associated-protein
MAMEDKIFVITSVGLSLVENYSKNGGTAYLSSDLLQKSKSENCHIYKDEIEKRDIKSWISKLEEKECINCCAEIKSLEKIVRRLENKSSNQALEVVLIKSDTIGCHISVEVLLKVLPDVLGSVLQENIQLQISKKFIKDLNLENPKTFRQGIKNLVCEVSSFFDKGKLVFDITGGYKSVIAVLSILAQINQSPAFYVYEDTDCLIEIPPAPIRPDLAFFEKYKELFQKDGIVPENEIPNGFPEELLDILDENENGKFYYLNPFAKELFKKCGKYALDSKSFLETYEHSSYEEIERIITVVGSSVFERNELLGKDDIEKAERSPANCEERECKKLEKKLKDKQNENLNCAELDSIMTILKKNNIDHSRVEIYLLYTDTLISKLAAEYVKNRLEKMGIKSKSSVIQGLRIDDSDKFIKMGLVNLLNEVYKIADRNWKKVCFNITTGFKSIVPYLTFLAMVNKSRIFYKFELADELFQIPPLPISIDWSLIKNNEKNLLEVEFGDCCISKQSYEELRSLVEKSGDKYVFTGVGRILWKKYLEINDIHALYLSDSALKKYEKLKKSDENHSTAFEKSLKELLKELHNVGENFKSRDKLCHDVGCEELKKKGFCIFKDEKERLQLRIIWKCEKTELYNTYKVYVNEFYIGKEVHNAENEYVNKCRESAEKILKVGGYRLCKLCKDGLIVLT
>NC_015707.1|WP_013932463.1|1160061_1161165_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MVINIKPVDTLFFRNSKPFEVGGENWAEIVFPPLPRTVYGALRTYLILQKGSIEEFKQGKFEEDLGTIDTYGKFKLKGIFLNKDGTLYFKIPYDSVLIEGKDKLKTLELMEKPKLMISNYPLEYVLFYRGGEKVEEPSGWIDTYELKKYLTGKDATVSKNSFYKISEKIGIARDEKSLSSKESYIYKIPLVQLERDVCISAVLEDSLRCLFDKEVDMLQLGGERKSAVFEIDKTDIDDDLNDLKDLNVDLKDGFFKVCLLTPTVFKKGWLPSWIDEATKEGKIGKLKVKLVAAATGRYIKVGGWDLARNKPKPLKKAVPAGAVYYFKLLEGDEKDVFETFHFKNISDEFSEEGFGFSVVGVVNGDGR
>NC_015707.1|WP_013932462.1|1157419_1160047_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MKNCERILKGFLHDPIDKVLRIPGHVGRAKMCMEILGISGFEEAKDSDMIAAAMERTLLEDTEKIQPFTEIRHPLCEGKLDVPEGFPEGIPEILEDVLKKIKYLQPEEMVYWLYRNYIDEVVAKLKVKGDVELSKYMPILPADTRVPDHSIFEHLKIASAINSYEKYQDNSLFFFSIGPVQSFISQSRKTQDLYNSSYLLSYLTFVATWVVAEEYGPMSIIYPELYGQPLFDWFLEKKKQIEVKNSLSSLVDLATIPNKFVAILPTSKQEELEDIVKKCEKEVREKWNDIVEYVLDNFLTSKPQQEIIDRQIKDFPEIYWVIVPWRINGKEVQIEAFRELKIETETIEKIIKTLKKQSLPVNVGIYYPLIYSLGEKFLKARKQLRNFVQTEEYGKKCTICGEREGVVSQGNVKPDKKHILKDKECLCVNCFAKRMLDEYLEKKEFPGATFGGFPSTAEICLADFREKILSSEDCRTAYEEFSKEFSKLLSVRIVKDSVVPKLKDDFDKIAENIYGEWLFEENLTQRKIKEELGEVERIEKNLPELRERLKELHKKVGKPSPYYAVIMLDGDNMGKWLSGELLPDIRYSYNTEVYESFSDSFKNNLPERKLLTPAIHASISHALRNYAIEFVKPIVEKEHLGKLVYAGGDDVLAFVNLKDLIPVLRKLRAAFSGQVEIVDGRIQVKSDNKTGFVEKDDKLILTMGPNATASCGVVIAHYKEPLKYVLNKVREMEEKAKQNDRNSFAINLIRRGKERIIVSKWFVEDNKTDVLSELENILRYFKEEKLSKTFVSKVYDSVVKTVNSTNGQLRLRGKMLEYELKRLIKRSSDPNKITNEEIESLAEKLHKLTYASFHYNFGSFICFIYLAAFLSDYLL
>NC_015707.1|WP_041446409.1|1156329_1157433_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MKRLSFECEIITPMFMSGSDTMTAELRPSEIKGMMRFWWRAARALDDLSSLKKEETEIFGGMDQGNTKSLKSSVSVIIERESLKAGNNILDLINSQQGNNYQGIKYLLYSTFSLKSGGKRLIKGYLKPGSRFKLILSFRDDNDEKIKAVLASFWLAMYLGAFGSRSRRGAGSVNVISHDFAFDFLDFNPKGSTKEELENWYRKNLAEIKKVIQPAKTGRYSNLSKAKIYIADPKPTWIDALEEVGIVFKEYRSKNKGKIFDMAAFGMPIHHNQFSVRLVPYDQKGRISDRFASPLIIKIVRSNGKYFPVLIHLTVDPIFAGKESKDGKRWMTATVNERKKLNFSVIDEFTKEFTKFLNAVVIEYEKL
>NC_015707.1|WP_041446620.1|1155469_1155862_+|DUF86-domain-containing-protein
MRERVQQYFTQFQNALRNLEEAVQYAKTDIEIDGTIKRFELCYELSWKLIKEYLADLGLICKNPRDCFRLAYQNGLIANDQIWMEMIDARNRLVRTYSAEESREMFIDIKEKFLHELKYLYDKILNAGQI
>NC_015707.1|WP_169310351.1|1154135_1155470_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MTRVKTVSFLCEVITPLFMSGSNVQTFELRPSEIKGMMRFWWRAVKALDDKEKLREEETDIFGGIKPTNLKSPVSIRIIQNLNDTSEQKAVKLGENIQGRINQRAGIKYLFYSTFSLKFAGERLVRKYLQPGTKFELILSCRDDDYEKFQKVLAAFWLTVNLGGLRTRSKRGAGDIRILQPKELKLREETLSFVKDDDNNVTKWIVDNFYVVRKIINGCKDFCSSYSNLSLSRFLISKESFNSWEDALDDLGKKYIDFRRKNSSKKPQIGVFGLPVNYRRTRITWKKVNDQNEDSDHDRRTSPLIFKVFRFGNKYRWMVLRMSGEFLPEGSVLNLSGRTQKPDFSLIDEFWNILKEHAVEDILSVPETLNKLAAEIKKELDARKVILFGSRARGDATKKSDIDIAVVTGKAVSNFEKIANVDLVNLNKVSNDLREKIIKEGIEL
>NC_015707.1|WP_169310350.1|1153676_1153847_-|hypothetical-protein
MDTSLKLRFTVDKCKVFVNLDNLVLATDKGSCVIMPEGYYPNKAITLNNLKESTEI
>NC_015707.1|WP_013932468.1|1167201_1169637_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MVVFKQTSENDLFILLGALLHDIGKFYMRTEDQTTKSRVSEKYSYFIQQEGSYAPMHQHWGAYFVEQVLPSSLKGVQSIVLNHHKPSSYEELLVAVADKLSASVDRESYDQNQFEERIAQMTSVFSSIKLTDSNTTPVHFKELVAKYDVRFPSPSAANNLADAYKKLWKSFESQMRKLKDSYERSFIDLNDYVTAVYNLIQVYTYNIPSAYYYSKPDISLWAHSKSTAAIAFCLDRQLKMVFGGNKDLMKRKLEQMVEKLNNRAPLSDENIQFLLVKGDASGIQDFVFDTSTEGALKALKGKSFYISYLLDTIAKYILKEINLPICNMLYNGGGHFYLLLPKYSEESLNDFQSKIDEVLFKAHNGSLNVFIEGIEVSLNDFQQNMGTKFDSITRKLQIKKVKKLNQLMKREDFFEPFIDPENACPYCGNPMTTNTASEGNCRYCESFVELGDLLIKSQFIKEEWQMEKVSQKPKNVLEVFAEFGRKVQLVEEEDKISNTTVIDMAKIQEKYGQPAEEFYIYEALDLSTHAPLTAPFAGGGQILSLDDIVKYAKGVETWGMLRGDVDSLGKIFKEGLGERNSLSRIMTLSQEFSLFFGYHFNKLVKEESYYSIVVYAGGDDFCVIGPWSDLPYLARLIREDFSKYVCSNPDITVSMGFEISESRKFPIYRVAVACGESLEKAKAYVRQNGKKKDCICFGGNQVGWEEFDKMKDLKEKLVELLEVKGVARSLINSIYKTCMLEEEAKREKEVFKSWRLVYYIARMMDRYKDLKKELEELLYKWLIEKQTNTLYKHAYLSTRWAELETRSKGGE
>NC_015707.1|WP_013932469.1|1169640_1170078_+|type-III-A-CRISPR-associated-protein-Csm2
MPQFDPRANQQTRGREGRGPTQELLSTILQNLDTALDPQKDPDGNVFSEVAEGTGRFISNVNPTQLRRIFTEVKRLSANDPAYKYKMKLVRARVAYAAGRFSELKEFAEIVKKAITVAEKNAENFKRFLDFFEAIVAYHKYFSVK
>NC_015707.1|WP_013932470.1|1170088_1170910_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNVILKGKFVVSCEIEAVTGLHIGTGRNSMEIGGNDNPVIKDAEGKPYIPGSSLKGKMRSLMEFAEEKVKENLLIEGKKGEIYMHMCDDPDCVVCGLFGRNHGDHTFKNGQKRDFTKSVLPTRLLVRDAKLVEDSISEEMKDYLDMEWTEVKWENSLDRITSKANPRQTERIPAGAKFSAEFVVNRLVVDNQDDGTKFIEKLIQAMKLLEDDYLGGHGSRGSGKVRFVNIKLSYRSKEYYEGSKKEEEILQADNLQQLTEKLADFAQKISSKE
>NC_015707.1|WP_013932471.1|1170916_1171915_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKRGKVYKIKLKLNSPFHLGRKEKTHGSVDTISHSDTLFSGIMNCHSLLYGDERTTKLVQAFLEGQPPFRISSTMPYINDIFFVFKPLGMNLKIYAPDEEEKKLKKAKYIPEENLLNGFKGSFTTVGELFVKKEDADKLTPFAIPQERVRVSLDRTSSASNVYYFPTYSYHKNSGLWFYIEILDESVEKEIFAAIKLLGDEGLGGDRSIGLGFFELATAPVPMDLPFAQHDETQLYTTLSLVNPRKGEAEKFRYYDIVNRSGYLYSKGDQGIKRKAVRMFIEGSVFEGEAFGRAVDVTPPSFKEHPALRYGLTFPVPLPKEVSFIDNSLENL
>NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MITHSKTYEITVLTPLFICSDLRDKLTEIDFFLENGKIVVIDFDKLLSLTKNNERLLDEILLGLEGSVASFDLKRILQKYQIKVEQCKRYAMNFRGTFPSGTRKEIACFVKTAGKVYIPGSSLKGAIRSFITKALQKKFIALYDNEIARVKTNDKISDAGVERQVFGDPYASVFKYLQISDSNPISPENLEVFEVKILNICNGRAKWYAKPQNVENPKDALSNFVEGLPSKMSVTGSIKIDPQFVEKLKEKVEVQVDDPVKFLAKLINHAAKHYIENEMNFYKKYGIYEIADLYQKILDNMPKLRENEFILQVGFSTGYLSKTVGMLLKPDSLKRVAEIAYRNAKPELFPKTRRIVFNNGKILAIPGWIRVKIM
>NC_015707.1|WP_157723315.1|1173139_1173643_+|hypothetical-protein
MKTDIFSISPIITKNKKEVQDGLWVFKDFRVYLVSPFIESVGRNFVDFHEILNAYHEGIELSQVVLRSAPVRKTGKLLSGVFANLDGRCIDYEQSPELFSECLRQYLLQIHKLKYGTIPDDVRFFIRLKGEIRKQKLLADRLEFFGDVQIFSSDELAKTFCEMFSLR
>NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein
MKALCFLGTGKYQAVTYTWVDTDGNAKSYSTELFPEAVYHIFEPSMVYVFVTKEAKERYLPKLQERLKDKLYPVDIPDGKSEGQLWEIFEKCADIVKDGDEIILDITHAFRSLPLIVFTVAMYLRQTKNVTVKHIVYGAFEARDENNCAPIFDLTAMVDLLDWINGVNAFVNYAAAEIFAEKLVHTQKKLRMGGGTISSELPTHLQEIGKKLRTLSLNLHMNRPIEVMKDANDLLSMLGRAQAELQTWAKPFAAIAKTLSKEISELAYAEAEKLTKQNLEKQLAIIAYCIRKNLIIQALTLARELAINCLFFSCGMKDRWLKQREREEIEKLINSYAQEQREESQKDGRIEPSCPDELKASLGRIWKDISTVRNDIAHCGMRESPIRADTAVEKAKGIYDELRRLLDHISE
>NC_015707.1|WP_013932475.1|1175096_1175321_+|HEAT-repeat-domain-containing-protein
MFENQQTNQFSEIASSKGIEKLIQALEDGDWRIRRLAAETLGKTGDPKAVEPLIQALEDNDSILRKLALKLLVE
>NC_015707.1|WP_083815682.1|1175293_1175524_+|HEAT-repeat-domain-containing-protein
MSAEALGRIGDPKAVEPLIERLKDSDPYVRKSTAEALGKIGDSRAVEPLIQALKDDDENVRSSASKALEKITGQKY
>NC_015707.1|WP_013932477.1|1178433_1179072_+|hypothetical-protein
MVKPIYALSDEEYQRLKDLSGMDNEGRLPMMLEPLDFESDVEAYFKIFGVLAQTQQEVLVIGTAIIKNKKKQKTIKMLTRALIKPGCIVYKTPIVINEVDSIMKTMSENTDLEVYSNEDNYLGLMKGGSSVVSDFLKALSKFSEVTEDALNVLHLSVQELESLANLLPTERGYTIEVQNLRDEAQEAFKKIYGLIVKATELYVRMSKSMVEE

Crispr_ID: NC_015707_4

• CRISPR_ID: NC_015707_4
• CRISPR_location: 1176111-1178074
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 29 spacers
• Cas_protein_info: csx1,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cmr6gr7

Consensus repeat of NC_015707_4

Consensus_repeat	Method
GTTTGAACCCTACCTATAAGGAATGGAAAC	PILER-CR
GTTTGAACCCTACCTATAAGGAATGGAAAC	CRISPRCasFinder
GTTTGAACCCTACCTATAAGGAATGGAAAC	CRT

spacers of NC_015707_4

>4.1|1176141|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AACTCTAACTTCGAATCTGTCGGGATATATTGCTGA
>4.2|1176207|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AGGATTGATTCTTCCACCACCTTCAAATGTTAATGCA
>4.3|1176274|39|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACAAACTTTCCATCTTTGAACAACAGTGAAGCACTTAAC
>4.4|1176343|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CTACATTCATTGTAATCATTCAACCACCTCCAATC
>4.5|1176408|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GTACGTATAGTCTCCGATGATAATTTCCGCCATTG
>4.6|1176473|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTGTTTTTTTGCAAAATTGATTCGATACACGAAATGA
>4.7|1176540|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATGTTTTCCACCAATGCGTCCAATCGATCCCGTTCA
>4.8|1176606|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACCATATGATGTGTTCGTTCGTACTATGGACCAGGT
>4.9|1176672|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TACGTATACACAAACGTCTGATAAATTTGAATCACA
>4.10|1176738|41|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC
>4.11|1176809|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA
>4.12|1176875|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTGATTCGGTAACTTTTATTTTTTGCTTTATAAAG
>4.13|1176941|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCGTTAGACAAATTTGTTAATTCAACAGGCTTCTCTGG
>4.14|1177009|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGATATATACGCGTGAAATCCGTAATCACTCGGAAAAT
>4.15|1177077|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGTATCTGAGTGTAAGAGATAGTGCCTTGAAAGATT
>4.16|1177143|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AGTACTAGTACATGCCGGCAATCTATCCAACCGCTGT
>4.17|1177210|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTTCTTCGCCGTTCCTACGCTTAGTCTATATTCTT
>4.18|1177276|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GGATCTGTTACTGCATCTGGTCTTTCGTTAAGCATC
>4.19|1177342|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AGCTTGTCTGCACTTGGCGCAGATTGTATGCTAAG
>4.20|1177407|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TATTGTGATAGACTGTGACCACATTTTTATCTCTGAC
>4.21|1177474|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GTATTCAGAACACGGTGTCACGTACAATTTGAAATCC
>4.22|1177541|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTGGTTTTAGCGGGCGCTGCGAAGGCGGGCGAGC
>4.23|1177606|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TACGTATACACAAACGTCTGATAAATTTGAATCACA
>4.24|1177672|41|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC
>4.25|1177743|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA
>4.26|1177809|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CACGTCCGTTCATAATCACCCCTAATAAGACCTACCGT
>4.27|1177877|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TCGTCGTGCGAGCCGTGCGAGCTTGCTTCTGTCGT
>4.28|1177942|35|NC_015707|CRISPRCasFinder,CRT
GGTCTTCCGTTACCAATTGATTGCCTTACGCTTTT
>4.29|1178007|38|NC_015707|CRISPRCasFinder
GGTATTACAGGCACAAAAGTGTAATGTCCGCAACAAAC

CRISPR arrays and Neighbor proteins around NC_015707_4

CRISPR arrays

The CRISPR arrays of NC_015707_4

>merge|NC_015707|4|1176111-1178074|PILER-CR,CRISPRCasFinder,CRT
GTTTGAACCCTACCTATAAGGAATGGAAACAACTCTAACTTCGAATCTGTCGGGATATATTGCTGAGTTTGAACCCTACCTATAAGGAATGGAAACAGGATTGATTCTTCCACCACCTTCAAATGTTAATGCAGTTTGAACCCTACCTATAAGGAATGGAAACACAAACTTTCCATCTTTGAACAACAGTGAAGCACTTAACGTTTGAACCCTACCTATAAGGAATGGAAACCTACATTCATTGTAATCATTCAACCACCTCCAATCGTTTGAACCCTACCTATAAGGAATGGAAACGTACGTATAGTCTCCGATGATAATTTCCGCCATTGGTTTGAACCCTACCTATAAGGAATGGAAACTTGTTTTTTTGCAAAATTGATTCGATACACGAAATGAGTTTGAACCCTACCTATAAGGAATGGAAACATGTTTTCCACCAATGCGTCCAATCGATCCCGTTCAGTTTGAACCCTACCTATAAGGAATGGAAACACCATATGATGTGTTCGTTCGTACTATGGACCAGGTGTTTGAACCCTACCTATAAGGAATGGAAACTACGTATACACAAACGTCTGATAAATTTGAATCACAGTTTGAACCCTACCTATAAGGAATGGAAACTTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAACGTTTGAACCCTACCTATAAGGAATGGAAATTTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAAGTTTGAACCCTACCTATAAGGAATGGAAACTTTGATTCGGTAACTTTTATTTTTTGCTTTATAAAGGTTTGAACCCTACCTATAAGGAATGGAAACGCGTTAGACAAATTTGTTAATTCAACAGGCTTCTCTGGGTTTGAACCCTACCTATAAGGAATGGAAACTGATATATACGCGTGAAATCCGTAATCACTCGGAAAATGTTTGAACCCTACCTATAAGGAATGGAAACTGTATCTGAGTGTAAGAGATAGTGCCTTGAAAGATTGTTTGAACCCTACCTATAAGGAATGGAAACAGTACTAGTACATGCCGGCAATCTATCCAACCGCTGTGTTTGAACCCTACCTATAAGGAATGGAAACTTTTCTTCGCCGTTCCTACGCTTAGTCTATATTCTTGTTTGAACCCTACCTATAAGGAATGGAAACGGATCTGTTACTGCATCTGGTCTTTCGTTAAGCATCGTTTGAACCCTACCTATAAGGAATGGAAACAGCTTGTCTGCACTTGGCGCAGATTGTATGCTAAGGTTTGAACCCTACCTATAAGGAATGGAAACTATTGTGATAGACTGTGACCACATTTTTATCTCTGACGTTTGAACCCTACCTATAAGGAATGGAAACGTATTCAGAACACGGTGTCACGTACAATTTGAAATCCGTTTGAACCCTACCTATAAGGAATGGAAACTTTGGTTTTAGCGGGCGCTGCGAAGGCGGGCGAGCGTTTGAACCCTACCTATAAGGAATGGAAACTACGTATACACAAACGTCTGATAAATTTGAATCACAGTTTGAACCCTACCTATAAGGAATGGAAACTTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAACGTTTGAACCCTACCTATAAGGAATGGAAATTTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAAGTTTGAACCCTACCTATAAGGAATGGAAACCACGTCCGTTCATAATCACCCCTAATAAGACCTACCGTGTTTGAACCCTACCTATAAGGAATGGAAACTCGTCGTGCGAGCCGTGCGAGCTTGCTTCTGTCGTGTTTGAACCCTACCTATAAGGAATGGAAACGGTCTTCCGTTACCAATTGATTGCCTTACGCTTTTGTTTGGACCCTACCTATGAAGAATGGAAACGGTATTACAGGCACAAAAGTGTAATGTCCGCAACAAACGTGTGTGCGTCACCTAAAAGGAATGAAAAC

>NC_015707|4|4|1176111-1177941|PILER-CR
GTTTGAACCCTACCTATAAGGAATGGAAAC	AACTCTAACTTCGAATCTGTCGGGATATATTGCTGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGGATTGATTCTTCCACCACCTTCAAATGTTAATGCA
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACAAACTTTCCATCTTTGAACAACAGTGAAGCACTTAAC
GTTTGAACCCTACCTATAAGGAATGGAAAC	CTACATTCATTGTAATCATTCAACCACCTCCAATC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTACGTATAGTCTCCGATGATAATTTCCGCCATTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTGTTTTTTTGCAAAATTGATTCGATACACGAAATGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATGTTTTCCACCAATGCGTCCAATCGATCCCGTTCA
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACCATATGATGTGTTCGTTCGTACTATGGACCAGGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TACGTATACACAAACGTCTGATAAATTTGAATCACA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC
GTTTGAACCCTACCTATAAGGAATGGAAAT	TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTGATTCGGTAACTTTTATTTTTTGCTTTATAAAG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GCGTTAGACAAATTTGTTAATTCAACAGGCTTCTCTGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGATATATACGCGTGAAATCCGTAATCACTCGGAAAAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGTATCTGAGTGTAAGAGATAGTGCCTTGAAAGATT
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGTACTAGTACATGCCGGCAATCTATCCAACCGCTGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTTCTTCGCCGTTCCTACGCTTAGTCTATATTCTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGATCTGTTACTGCATCTGGTCTTTCGTTAAGCATC
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGCTTGTCTGCACTTGGCGCAGATTGTATGCTAAG
GTTTGAACCCTACCTATAAGGAATGGAAAC	TATTGTGATAGACTGTGACCACATTTTTATCTCTGAC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTATTCAGAACACGGTGTCACGTACAATTTGAAATCC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTGGTTTTAGCGGGCGCTGCGAAGGCGGGCGAGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TACGTATACACAAACGTCTGATAAATTTGAATCACA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC
GTTTGAACCCTACCTATAAGGAATGGAAAT	TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	CACGTCCGTTCATAATCACCCCTAATAAGACCTACCGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TCGTCGTGCGAGCCGTGCGAGCTTGCTTCTGTCGT
GTTTGAACCCTACCTATAAGGAATGGAAAC

>NC_015707|4|4|1176111-1178074|CRISPRCasFinder
GTTTGAACCCTACCTATAAGGAATGGAAAC	AACTCTAACTTCGAATCTGTCGGGATATATTGCTGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGGATTGATTCTTCCACCACCTTCAAATGTTAATGCA
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACAAACTTTCCATCTTTGAACAACAGTGAAGCACTTAAC
GTTTGAACCCTACCTATAAGGAATGGAAAC	CTACATTCATTGTAATCATTCAACCACCTCCAATC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTACGTATAGTCTCCGATGATAATTTCCGCCATTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTGTTTTTTTGCAAAATTGATTCGATACACGAAATGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATGTTTTCCACCAATGCGTCCAATCGATCCCGTTCA
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACCATATGATGTGTTCGTTCGTACTATGGACCAGGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TACGTATACACAAACGTCTGATAAATTTGAATCACA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC
GTTTGAACCCTACCTATAAGGAATGGAAAT	TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTGATTCGGTAACTTTTATTTTTTGCTTTATAAAG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GCGTTAGACAAATTTGTTAATTCAACAGGCTTCTCTGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGATATATACGCGTGAAATCCGTAATCACTCGGAAAAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGTATCTGAGTGTAAGAGATAGTGCCTTGAAAGATT
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGTACTAGTACATGCCGGCAATCTATCCAACCGCTGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTTCTTCGCCGTTCCTACGCTTAGTCTATATTCTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGATCTGTTACTGCATCTGGTCTTTCGTTAAGCATC
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGCTTGTCTGCACTTGGCGCAGATTGTATGCTAAG
GTTTGAACCCTACCTATAAGGAATGGAAAC	TATTGTGATAGACTGTGACCACATTTTTATCTCTGAC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTATTCAGAACACGGTGTCACGTACAATTTGAAATCC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTGGTTTTAGCGGGCGCTGCGAAGGCGGGCGAGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TACGTATACACAAACGTCTGATAAATTTGAATCACA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC
GTTTGAACCCTACCTATAAGGAATGGAAAT	TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	CACGTCCGTTCATAATCACCCCTAATAAGACCTACCGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TCGTCGTGCGAGCCGTGCGAGCTTGCTTCTGTCGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGTCTTCCGTTACCAATTGATTGCCTTACGCTTTT
GTTTGGACCCTACCTATGAAGAATGGAAAC	GGTATTACAGGCACAAAAGTGTAATGTCCGCAACAAAC
GTGTGTGCGTCACCTAAAAGGAATGAAAAC

>NC_015707|4|4|1176111-1178006|CRT
GTTTGAACCCTACCTATAAGGAATGGAAAC	AACTCTAACTTCGAATCTGTCGGGATATATTGCTGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGGATTGATTCTTCCACCACCTTCAAATGTTAATGCA
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACAAACTTTCCATCTTTGAACAACAGTGAAGCACTTAAC
GTTTGAACCCTACCTATAAGGAATGGAAAC	CTACATTCATTGTAATCATTCAACCACCTCCAATC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTACGTATAGTCTCCGATGATAATTTCCGCCATTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTGTTTTTTTGCAAAATTGATTCGATACACGAAATGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	ATGTTTTCCACCAATGCGTCCAATCGATCCCGTTCA
GTTTGAACCCTACCTATAAGGAATGGAAAC	ACCATATGATGTGTTCGTTCGTACTATGGACCAGGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TACGTATACACAAACGTCTGATAAATTTGAATCACA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC
GTTTGAACCCTACCTATAAGGAATGGAAAT	TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTGATTCGGTAACTTTTATTTTTTGCTTTATAAAG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GCGTTAGACAAATTTGTTAATTCAACAGGCTTCTCTGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGATATATACGCGTGAAATCCGTAATCACTCGGAAAAT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TGTATCTGAGTGTAAGAGATAGTGCCTTGAAAGATT
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGTACTAGTACATGCCGGCAATCTATCCAACCGCTGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTTCTTCGCCGTTCCTACGCTTAGTCTATATTCTT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGATCTGTTACTGCATCTGGTCTTTCGTTAAGCATC
GTTTGAACCCTACCTATAAGGAATGGAAAC	AGCTTGTCTGCACTTGGCGCAGATTGTATGCTAAG
GTTTGAACCCTACCTATAAGGAATGGAAAC	TATTGTGATAGACTGTGACCACATTTTTATCTCTGAC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTATTCAGAACACGGTGTCACGTACAATTTGAAATCC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTTGGTTTTAGCGGGCGCTGCGAAGGCGGGCGAGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	TACGTATACACAAACGTCTGATAAATTTGAATCACA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTGTTCCTGATGTTTAGCGCCTTAAGCACGGAATCCTCAAC
GTTTGAACCCTACCTATAAGGAATGGAAAT	TTTTCGAGTATACCAGTAAGTTCGGAACTGTGCAAA
GTTTGAACCCTACCTATAAGGAATGGAAAC	CACGTCCGTTCATAATCACCCCTAATAAGACCTACCGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	TCGTCGTGCGAGCCGTGCGAGCTTGCTTCTGTCGT
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGTCTTCCGTTACCAATTGATTGCCTTACGCTTTT
GTTTGGACCCTACCTATGAAGAATGGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015707.1|WP_157723315.1|1173139_1173643_+|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	unknown
NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl|CDD|378186
NC_015707.1|WP_013932482.1|1181233_1182478_+|hypothetical-protein	unknown	unknown	gnl|CDD|276809
NC_015707.1|WP_013932485.1|1187510_1189196_+|M3-family-oligoendopeptidase	unknown	unknown	gnl|CDD|341069
NC_015707.1|WP_157723316.1|1180159_1181212_+|DUF1998-domain-containing-protein	unknown	unknown	gnl|CDD|378167
NC_015707.1|WP_083815682.1|1175293_1175524_+|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|379311
NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl|CDD|187793
NC_015707.1|WP_013932467.1|1164587_1165478_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl|CDD|187792
NC_015707.1|WP_013932486.1|1189566_1190388_+|DegV-family-protein	unknown	unknown	gnl|CDD|273257
NC_015707.1|WP_013932477.1|1178433_1179072_+|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932469.1|1169640_1170078_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl|CDD|367635
NC_015707.1|WP_013932475.1|1175096_1175321_+|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|379311
NC_015707.1|WP_013932487.1|1190440_1190941_+|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932479.1|1179307_1179727_+|DUF1232-domain-containing-protein	unknown	unknown	gnl|CDD|377712
NC_015707.1|WP_013932484.1|1186864_1187443_-|HAD-IA-family-hydrolase	unknown	unknown	gnl|CDD|319790
NC_015707.1|WP_013932470.1|1170088_1170910_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
NC_015707.1|WP_013932471.1|1170916_1171915_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl|CDD|187794
NC_015707.1|WP_013932468.1|1167201_1169637_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl|CDD|187811
NC_015707.1|WP_013932483.1|1185249_1186602_+|ATP-binding-protein	unknown	unknown	gnl|CDD|224586
NC_015707.1|WP_013932478.1|1179100_1179286_+|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015707.1|WP_157723315.1|1173139_1173643_+|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	1.5e-78	257.8	0.6
NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	5.1e-77	254.1	0.3
NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	2e-34	114.1	1.9
NC_015707.1|WP_013932467.1|1164587_1165478_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	2.7e-57	189.0	0.6
NC_015707.1|WP_013932470.1|1170088_1170910_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	4.8e-71	233.6	0.2
NC_015707.1|WP_013932471.1|1170916_1171915_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	2.3e-53	176.1	0.1
NC_015707.1|WP_013932468.1|1167201_1169637_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	5.3e-138	456.0	2.1
NC_015707.1|WP_013932469.1|1169640_1170078_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	3.1e-29	96.6	0.7

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein	gnl|CDD|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	9.45442e-75
NC_015707.1|WP_013932482.1|1181233_1182478_+|hypothetical-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.40818e-06
NC_015707.1|WP_083815682.1|1175293_1175524_+|HEAT-repeat-domain-containing-protein	gnl|CDD|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	2.92787e-16
NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl|CDD|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.52475e-27
NC_015707.1|WP_013932467.1|1164587_1165478_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl|CDD|187792	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	9.09252e-52
NC_015707.1|WP_013932486.1|1189566_1190388_+|DegV-family-protein	gnl|CDD|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	9.17928e-67
NC_015707.1|WP_013932485.1|1187510_1189196_+|M3-family-oligoendopeptidase	gnl|CDD|341069	cd09606, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3 oligopeptidase F (oligendopeptidase) is mostly bacterial and includes oligoendopeptidase F from Geobacillus stearothermophilus. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids and may cleave proteins at Leu-Gly. The PepF gene is duplicated in Lactococcus lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.	0
NC_015707.1|WP_013932469.1|1169640_1170078_+|type-III-A-CRISPR-associated-protein-Csm2	gnl|CDD|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	6.00775e-28
NC_015707.1|WP_157723316.1|1180159_1181212_+|DUF1998-domain-containing-protein	gnl|CDD|378167	pfam09369, DUF1998, Domain of unknown function (DUF1998). This family of proteins are functionally uncharacterized. They are mainly found in helicase proteins so could be RNA binding. This family includes a probable zinc binding motif at its C-terminus.	2.41205e-06
NC_015707.1|WP_013932479.1|1179307_1179727_+|DUF1232-domain-containing-protein	gnl|CDD|377712	pfam06803, DUF1232, Protein of unknown function (DUF1232). This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function.	3.52807e-09
NC_015707.1|WP_013932475.1|1175096_1175321_+|HEAT-repeat-domain-containing-protein	gnl|CDD|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	6.14675e-10
NC_015707.1|WP_013932484.1|1186864_1187443_-|HAD-IA-family-hydrolase	gnl|CDD|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.97239e-30
NC_015707.1|WP_013932470.1|1170088_1170910_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.15601e-81
NC_015707.1|WP_013932471.1|1170916_1171915_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl|CDD|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	5.33723e-41
NC_015707.1|WP_013932468.1|1167201_1169637_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.70402e-120
NC_015707.1|WP_013932483.1|1185249_1186602_+|ATP-binding-protein	gnl|CDD|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	2.33814e-26

Protein sequences

>NC_015707.1|WP_083815682.1|1175293_1175524_+|HEAT-repeat-domain-containing-protein
MSAEALGRIGDPKAVEPLIERLKDSDPYVRKSTAEALGKIGDSRAVEPLIQALKDDDENVRSSASKALEKITGQKY
>NC_015707.1|WP_013932475.1|1175096_1175321_+|HEAT-repeat-domain-containing-protein
MFENQQTNQFSEIASSKGIEKLIQALEDGDWRIRRLAAETLGKTGDPKAVEPLIQALEDNDSILRKLALKLLVE
>NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein
MKALCFLGTGKYQAVTYTWVDTDGNAKSYSTELFPEAVYHIFEPSMVYVFVTKEAKERYLPKLQERLKDKLYPVDIPDGKSEGQLWEIFEKCADIVKDGDEIILDITHAFRSLPLIVFTVAMYLRQTKNVTVKHIVYGAFEARDENNCAPIFDLTAMVDLLDWINGVNAFVNYAAAEIFAEKLVHTQKKLRMGGGTISSELPTHLQEIGKKLRTLSLNLHMNRPIEVMKDANDLLSMLGRAQAELQTWAKPFAAIAKTLSKEISELAYAEAEKLTKQNLEKQLAIIAYCIRKNLIIQALTLARELAINCLFFSCGMKDRWLKQREREEIEKLINSYAQEQREESQKDGRIEPSCPDELKASLGRIWKDISTVRNDIAHCGMRESPIRADTAVEKAKGIYDELRRLLDHISE
>NC_015707.1|WP_157723315.1|1173139_1173643_+|hypothetical-protein
MKTDIFSISPIITKNKKEVQDGLWVFKDFRVYLVSPFIESVGRNFVDFHEILNAYHEGIELSQVVLRSAPVRKTGKLLSGVFANLDGRCIDYEQSPELFSECLRQYLLQIHKLKYGTIPDDVRFFIRLKGEIRKQKLLADRLEFFGDVQIFSSDELAKTFCEMFSLR
>NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MITHSKTYEITVLTPLFICSDLRDKLTEIDFFLENGKIVVIDFDKLLSLTKNNERLLDEILLGLEGSVASFDLKRILQKYQIKVEQCKRYAMNFRGTFPSGTRKEIACFVKTAGKVYIPGSSLKGAIRSFITKALQKKFIALYDNEIARVKTNDKISDAGVERQVFGDPYASVFKYLQISDSNPISPENLEVFEVKILNICNGRAKWYAKPQNVENPKDALSNFVEGLPSKMSVTGSIKIDPQFVEKLKEKVEVQVDDPVKFLAKLINHAAKHYIENEMNFYKKYGIYEIADLYQKILDNMPKLRENEFILQVGFSTGYLSKTVGMLLKPDSLKRVAEIAYRNAKPELFPKTRRIVFNNGKILAIPGWIRVKIM
>NC_015707.1|WP_013932471.1|1170916_1171915_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKRGKVYKIKLKLNSPFHLGRKEKTHGSVDTISHSDTLFSGIMNCHSLLYGDERTTKLVQAFLEGQPPFRISSTMPYINDIFFVFKPLGMNLKIYAPDEEEKKLKKAKYIPEENLLNGFKGSFTTVGELFVKKEDADKLTPFAIPQERVRVSLDRTSSASNVYYFPTYSYHKNSGLWFYIEILDESVEKEIFAAIKLLGDEGLGGDRSIGLGFFELATAPVPMDLPFAQHDETQLYTTLSLVNPRKGEAEKFRYYDIVNRSGYLYSKGDQGIKRKAVRMFIEGSVFEGEAFGRAVDVTPPSFKEHPALRYGLTFPVPLPKEVSFIDNSLENL
>NC_015707.1|WP_013932470.1|1170088_1170910_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNVILKGKFVVSCEIEAVTGLHIGTGRNSMEIGGNDNPVIKDAEGKPYIPGSSLKGKMRSLMEFAEEKVKENLLIEGKKGEIYMHMCDDPDCVVCGLFGRNHGDHTFKNGQKRDFTKSVLPTRLLVRDAKLVEDSISEEMKDYLDMEWTEVKWENSLDRITSKANPRQTERIPAGAKFSAEFVVNRLVVDNQDDGTKFIEKLIQAMKLLEDDYLGGHGSRGSGKVRFVNIKLSYRSKEYYEGSKKEEEILQADNLQQLTEKLADFAQKISSKE
>NC_015707.1|WP_013932469.1|1169640_1170078_+|type-III-A-CRISPR-associated-protein-Csm2
MPQFDPRANQQTRGREGRGPTQELLSTILQNLDTALDPQKDPDGNVFSEVAEGTGRFISNVNPTQLRRIFTEVKRLSANDPAYKYKMKLVRARVAYAAGRFSELKEFAEIVKKAITVAEKNAENFKRFLDFFEAIVAYHKYFSVK
>NC_015707.1|WP_013932468.1|1167201_1169637_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MVVFKQTSENDLFILLGALLHDIGKFYMRTEDQTTKSRVSEKYSYFIQQEGSYAPMHQHWGAYFVEQVLPSSLKGVQSIVLNHHKPSSYEELLVAVADKLSASVDRESYDQNQFEERIAQMTSVFSSIKLTDSNTTPVHFKELVAKYDVRFPSPSAANNLADAYKKLWKSFESQMRKLKDSYERSFIDLNDYVTAVYNLIQVYTYNIPSAYYYSKPDISLWAHSKSTAAIAFCLDRQLKMVFGGNKDLMKRKLEQMVEKLNNRAPLSDENIQFLLVKGDASGIQDFVFDTSTEGALKALKGKSFYISYLLDTIAKYILKEINLPICNMLYNGGGHFYLLLPKYSEESLNDFQSKIDEVLFKAHNGSLNVFIEGIEVSLNDFQQNMGTKFDSITRKLQIKKVKKLNQLMKREDFFEPFIDPENACPYCGNPMTTNTASEGNCRYCESFVELGDLLIKSQFIKEEWQMEKVSQKPKNVLEVFAEFGRKVQLVEEEDKISNTTVIDMAKIQEKYGQPAEEFYIYEALDLSTHAPLTAPFAGGGQILSLDDIVKYAKGVETWGMLRGDVDSLGKIFKEGLGERNSLSRIMTLSQEFSLFFGYHFNKLVKEESYYSIVVYAGGDDFCVIGPWSDLPYLARLIREDFSKYVCSNPDITVSMGFEISESRKFPIYRVAVACGESLEKAKAYVRQNGKKKDCICFGGNQVGWEEFDKMKDLKEKLVELLEVKGVARSLINSIYKTCMLEEEAKREKEVFKSWRLVYYIARMMDRYKDLKKELEELLYKWLIEKQTNTLYKHAYLSTRWAELETRSKGGE
>NC_015707.1|WP_013932467.1|1164587_1165478_+|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MKKEDVIIRDEIKSVINKIDNFAIDNFALRFRFPEITESEKKGERKIKIEIINDIDKVGKSIFTSQKSIISDINERRKKSILTLEKFGYKVIEFTAKPCWRMVVGLGGTHPQETSMILHHVYGFPYIPGSSIKGVTRSMFILDWFEKVKKALVSENIDLSKFVAGLENYNPKSAKNQLPEYYDRELVDLYSNIFGTQEYQGKVIFFDAFPVGEINLVLDIINPHYPDYYSGNKPPADYQNPNPIKFLTVANTNFLFVLAGENEKIVIEAERYLKQALQAIGIGAKTSLGYGLFEIL
>NC_015707.1|WP_013932477.1|1178433_1179072_+|hypothetical-protein
MVKPIYALSDEEYQRLKDLSGMDNEGRLPMMLEPLDFESDVEAYFKIFGVLAQTQQEVLVIGTAIIKNKKKQKTIKMLTRALIKPGCIVYKTPIVINEVDSIMKTMSENTDLEVYSNEDNYLGLMKGGSSVVSDFLKALSKFSEVTEDALNVLHLSVQELESLANLLPTERGYTIEVQNLRDEAQEAFKKIYGLIVKATELYVRMSKSMVEE
>NC_015707.1|WP_013932478.1|1179100_1179286_+|hypothetical-protein
MKNFLHALRSIGLISIAVILLIALPVIIIVTTYIFGIFVVCLAVFFIVKGILGLKELKQRK
>NC_015707.1|WP_013932479.1|1179307_1179727_+|DUF1232-domain-containing-protein
MASLGDFFNRLKNLVSNKRLDELFNEVLRYLRRYHVPEIVYIVRRFMVFLRLIGKPKALLIASLVLGYVLLPLDLCPDFIPFFGLLDDVLLIITAMEMIAAGVYNFQTIFRRMIKRFQQQRIKQKPSREIYRKLIQLGC
>NC_015707.1|WP_157723316.1|1180159_1181212_+|DUF1998-domain-containing-protein
MLVNRTLLTYKFIHYKIEESDVPRKRKKYIYDRYVEVKCSSFDVQEDSNEKSPMKFWLAKKCRIRYINNGRECGKRIAGKSNYNVIPFEVKTEDGNLTGAIGCEIARDCLVIRFDKRFFNYTMVINLCSAVCKAIEKLFNYGENELFFLVDEKMNLNDSDHIFALFYDRTGNEEIEFETIAENFMDILKVAYDSLNTCNCVKGCTNCMAIRRVDYEYIFDKQKAIKALKLSIFERDETTKYCDEESAVVEEVTVISEPNTGKFRVQSSLINREFEYYESTLDKQKKVNLEYKNLAKILKLYCGRADEIVIKSKQQWVVEKINFLTSSDDTYIDEFCFYRLAYKNVVGIKI
>NC_015707.1|WP_013932482.1|1181233_1182478_+|hypothetical-protein
MNQQPKRSNQMLREMYNSLKTHLNAKDFQKAYEIATAILNENDPFWTKQVNRYLPWILFNLKLKSQRISLEELHQTVETIVTLSERKNGFVLRSVSILASETLKKADRKKGLQILQSANELLDKINVDELSDKPLESSKYKDKAGKNKVLPSEREKWYQLKTKILLVLKKYDECIQQCRNALKVSNLIDPVWFYYRIACASSYIGKYEEGLEALEKVLLYKDDWYVQKLFFEIYAKMKDFDNALKYGCRTALNSASDSQKLTFYLNFADFLKAHNYKREADLHYYLYLKTLEKMKDGQKNDTNVKRVYGSLTDKNVVKMREQDVRSELAKFWKDNKFRNEKQLEGTVAKVINNGAGFIKSSDSQSYYFKLEDVENAPKSAHELRNKKVKFYPTKSYDKKKGMESWAAVGIVVVE
>NC_015707.1|WP_013932483.1|1185249_1186602_+|ATP-binding-protein
MLINREKECEFLRKKVASNKAELLVIYGRRRVGKTFLLQNCLQNALFFTADLSNNLQLMNRFLDEIKDILKLPPTLRISSWDEFFALLKNVFESRNNLKTIVFDEFQYIPMRDESFMSIFQRWWDEVFSKMKVKIILCGSYVGIIEKIALSQNSPLYGRRTGQYEILPLDFFDSIKFLSFESKEDYVKAYSITDGIPIYLLEFAEYKDFETALMEKILSPGEFLVDEGKFITLEEFNDPSNYFSILVSIANGKTTPNEIAADSGVDYKSINVYLSKLVDLKFVEKEFPFSISKKPKQKPHYRISDEYLRFYFRYLHVYKDLIHRGKKEEVKEKILASFDQHVSFTFEKIARQHLLRKFGVEKVGRWWSKDVEIDLVAIKNDILYVGECKWTNKKVDNRTLNKLKGKVPYLLKELQMDNLNVVYCLYSKSGFENLKESEELKLIDLEEIFK
>NC_015707.1|WP_013932484.1|1186864_1187443_-|HAD-IA-family-hydrolase
MKLFIFDVGNVVYSNTSVAPKIAKYLGITLEEFLKLAKSSGLDLLQKGLISVEDFWSNFSKLFGKSISEDLWAKFFDPLPIDGTIELIKKLRKHFRVVAGTNTILSHYEIHLKKGHYDIFDAVYASHVIHYTKPDPNFFMYILKSENAAPEETFFTDDDPKNVQCALALKINAFVFTDPKELESKLKQLLGH
>NC_015707.1|WP_013932485.1|1187510_1189196_+|M3-family-oligoendopeptidase
MKFSEFVYQRPNVDQLEEKLRNLIESFKKANSFEQARDILNQINQLRNDFSTASAIATIRYCMNTLDDFYKKEKEYFDEASPRMEGVIVELYKALVSSPFKDQLQKEFGNQLFTIAQLQTKTFKPEVLEDLILENKLGTEYSNLVSSAKIPFEGQNLTLPQVAAFMQVADRQVRKKAAEAYFSFFERNEEKTDKIYDQLVEVRTKIAHKLGYENFVQLAYDRLGRSDYNPKMVAKFREAIKKYIVPVVSELREEQRKRLEVDVLKYYDFSVVLKEGNPKPKGEPDEIIQKARQMYEEMSPETGEFFNFMLEDELMDLKSREGKYPGGFCHFIPNYKSPFIFANFNGTQDDVEVLTHEAGHAFQVYRSRNFTVPEYYWPTTESCEIHSMSMEFFAWPWLELFYGQDAEKAKFVHLSSALFFIPYGTLVDEFQHLVYENPSMTPQQRKKLWRSLEKIYMPELDYDGNKFLENGGRWHRQTHIFESPFYYIDYVLAQICAFQFWIKWEENRKKAFEDYLKLCDAGGSKSFMELVKLANLSSPFEEETIKKVAEKVVLWLEKQKI
>NC_015707.1|WP_013932486.1|1189566_1190388_+|DegV-family-protein
MNCAIVVDSTIDIPEDYVCPIPLYILPLRIFIDNKEYKDRVDISCEEIYEELEKGKKITTSLPSPSDALSLLQKLSKQFEQIVVLTVSSKLSGTFNMIKMLVEQMSLKKVNVFDTKAVSGKIFHIVQRVAADLLKGEKITQEKILEYNKSSLMLFVLNSLEYLKKGGRIGKLSAFMGKLFNLKPILSIDEEGEVYKVTTAKSEEQMIDKIVELVERFAPDRRTVYAGYGKKTMERLVFKLQEKLGKIAGLARIGPAVAAHAGPETFGVLVVKE
>NC_015707.1|WP_013932487.1|1190440_1190941_+|hypothetical-protein
MRKIFVLILVCISLVNFSQDFLARIKEIQAFYDALDLSLVKVSILDAVRISGIKDPMVCYLDLSKDEYVWVVLSVVERVEISAIDGRMLARSTLKMDNYSYSINLQNAISLAILSIGKNVLFAYPTHEGWIVGTKEKVAAVSMKTTAVIWIKDRREYFESLKVQGG

Crispr_ID: NC_015707_5

• CRISPR_ID: NC_015707_5
• CRISPR_location: 1182746-1184713
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 29 spacers
• Cas_protein_info: csx1,cas6,csm5gr7

Consensus repeat of NC_015707_5

Consensus_repeat	Method
GTTTGGACACTACCTATGAGGAATGGAAAC	PILER-CR
GTTTGGACACTACCTATGAGGAATGGAAAC	CRISPRCasFinder
GTTTGAACCCTACCTATGAGGAATGGAAAC	CRT
GTTTGAACCCTACCTATGAGGAATGGAAAC	PILER-CR

spacers of NC_015707_5

>5.1|1182776|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AGTTCTTCTTCCAATGCCAATGCCGGAAGACTGTCC
>5.2|1182842|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CAGCATACAGCATTGCACCAACAACATCGGAATCTG
>5.3|1182908|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCATACCAATTCACAAAACTTTGGTACTTTTCCAATT
>5.4|1182975|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GGGAATGTGGTACAATTATTTATGAGCGCATAATTA
>5.5|1183041|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGCCGTATTCGTTCATACCAACTATAATCCAGTCAAG
>5.6|1183108|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AATCCTGCCGGGACATATTCGCTTTTAACACCTAC
>5.7|1183173|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTGTTTTAGCGCCCTGATTTTGGGCGCAGATTTAGT
>5.8|1183239|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTTTTTAGCATAAACATCACTTTCTAATAAAGAAA
>5.9|1183304|36|NC_015707|CRISPRCasFinder,CRT
CTTTTCTTGATTGCATATAGTGCTACGTTTGCAAGA
>5.10|1183370|37|NC_015707|CRISPRCasFinder,CRT,PILER-CR
CCAGAAAAGCAGGAAGGCGTTTACTATATTGTATCGC
>5.11|1183437|36|NC_015707|CRISPRCasFinder,CRT,PILER-CR
TCGAAATCTGCAGAAAGGTTGTTTCTCGAGTAAGTG
>5.12|1183503|41|NC_015707|CRISPRCasFinder,CRT,PILER-CR
TTTAAACATCCAATCGAGAAAAAACTTATCTTCCCAGTCGG
>5.13|1183574|37|NC_015707|CRISPRCasFinder,CRT,PILER-CR
TTGAGTTCCTCGTCGTTTACAGAACCACTCACATCTA
>5.14|1183641|36|NC_015707|CRISPRCasFinder,CRT,PILER-CR
TTGAGCGACCACGACGGAATGTGGAAATCTGTATAG
>5.15|1183707|37|NC_015707|CRISPRCasFinder,CRT,PILER-CR
CTCTATAAACAATTCAAAAACGAAATCCATCAATACC
>5.16|1183774|36|NC_015707|CRISPRCasFinder,CRT,PILER-CR
TATTAGAAAGTTGGTCGTGGTGTGATATAAGATATA
>5.17|1183840|37|NC_015707|CRISPRCasFinder,CRT,PILER-CR
TTTTCAACCAACCAGACCGCAACCCGCTCGTTAATGC
>5.18|1183907|36|NC_015707|CRISPRCasFinder,CRT,PILER-CR
GTTTCATACCTTTGACCTTTCCCGGAACACCATCGA
>5.19|1183973|38|NC_015707|CRISPRCasFinder,CRT,PILER-CR
TTCGTTTCCAGTACGAACCTGAACATCCTGAACCCCTG
>5.20|1184041|36|NC_015707|CRISPRCasFinder,CRT,PILER-CR
CTTCTGAGATTTTGCGCCCGCCATGGGTATGGGGGG
>5.21|1184107|35|NC_015707|CRISPRCasFinder,CRT,PILER-CR
GGGAATTTCTCCCTGGTATCTGTGACAAGTAAAAA
>5.22|1184172|38|NC_015707|CRISPRCasFinder,CRT,PILER-CR
TAAGCCTCCTGCGGCTATTTCATCACCAATATTTTCAC
>5.23|1184240|36|NC_015707|CRISPRCasFinder,CRT,PILER-CR
ATACGCACTAACATTTTCCGCAATCCAATTTGTAAT
>5.24|1184306|38|NC_015707|CRISPRCasFinder,CRT,PILER-CR
AGTGATGATCGTATTGGTCCATACCACGGACAATTCAA
>5.25|1184374|38|NC_015707|CRISPRCasFinder,CRT,PILER-CR
AGTAACGGATTGACAGATCCCAGCAGGGATCCACCCTG
>5.26|1184442|37|NC_015707|CRISPRCasFinder,CRT,PILER-CR
CGTGTGTCTGTATGCAGTAGATAGTACTTGGAAAGTT
>5.27|1184509|39|NC_015707|CRISPRCasFinder,CRT,PILER-CR
GTTTCTACCAAATGGACCACAACCTGCTCGTTGAAGCAG
>5.28|1184578|41|NC_015707|CRISPRCasFinder,CRT,PILER-CR
TACCGAAATAAGGTTCTCGGCGGCTTTGGCCGCGATTACCC
>5.29|1184649|35|NC_015707|CRISPRCasFinder,CRT
CCCAATTTAAACGTTGAAACCGTGCTGAATAAAGG

CRISPR arrays and Neighbor proteins around NC_015707_5

CRISPR arrays

The CRISPR arrays of NC_015707_5

>merge|NC_015707|5|1182746-1184713|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTGGACACTACCTATGAGGAATGGAAACAGTTCTTCTTCCAATGCCAATGCCGGAAGACTGTCCGTTTGGACACTACCTATGAGGAATGGAAACCAGCATACAGCATTGCACCAACAACATCGGAATCTGGTTTGGACACTACCTATGAGGAATGGAAACGCATACCAATTCACAAAACTTTGGTACTTTTCCAATTGTTTGGACACTACCTATGAGGAATGGAAACGGGAATGTGGTACAATTATTTATGAGCGCATAATTAGTTTGGACACTACCTATGAGGAATGGAAACTGCCGTATTCGTTCATACCAACTATAATCCAGTCAAGGTTTGGACACTACCTATGAGGAATGGAAACAATCCTGCCGGGACATATTCGCTTTTAACACCTACGTTTGGACACTACCTATGAGGAATGGAAACTTGTTTTAGCGCCCTGATTTTGGGCGCAGATTTAGTGTTTGGACACTACCTATGAGGAATGGAAACTTTTTTAGCATAAACATCACTTTCTAATAAAGAAAGTTTGGACACTACCTATGAGGAATGGAAACCTTTTCTTGATTGCATATAGTGCTACGTTTGCAAGAGTTTGAACCCTACCTATGAGGAATGGAAACCCAGAAAAGCAGGAAGGCGTTTACTATATTGTATCGCGTTTGAACCCTACCTATGAGGAATGGAAACTCGAAATCTGCAGAAAGGTTGTTTCTCGAGTAAGTGGTTTGAACCCTACCTATGAGGAATGGAAACTTTAAACATCCAATCGAGAAAAAACTTATCTTCCCAGTCGGGTTTGAACCCTACCTATGAGGAATGGAAACTTGAGTTCCTCGTCGTTTACAGAACCACTCACATCTAGTTTGAACCCTACCTATGAGGAATGGAAACTTGAGCGACCACGACGGAATGTGGAAATCTGTATAGGTTTGAACCCTACCTATGAGGAATGGAAACCTCTATAAACAATTCAAAAACGAAATCCATCAATACCGTTTGAACCCTACCTATGAGGAATGGAAACTATTAGAAAGTTGGTCGTGGTGTGATATAAGATATAGTTTGAACCCTACCTATGAGGAATGGAAACTTTTCAACCAACCAGACCGCAACCCGCTCGTTAATGCGTTTGAACCCTACCTATAAGGAATGGAAACGTTTCATACCTTTGACCTTTCCCGGAACACCATCGAGTTTGAACCCTACCTATAAGGAATGGAAACTTCGTTTCCAGTACGAACCTGAACATCCTGAACCCCTGGTTTGAACCCTACCTATAAGGAATGGAAACCTTCTGAGATTTTGCGCCCGCCATGGGTATGGGGGGGTTTGAACCCTACCTATAAGGAATGGAAACGGGAATTTCTCCCTGGTATCTGTGACAAGTAAAAAGTTTGAACCCTACCTATGAGGAATGGAAACTAAGCCTCCTGCGGCTATTTCATCACCAATATTTTCACGTTTGAACCCTACCTATGAGGAATGGAAACATACGCACTAACATTTTCCGCAATCCAATTTGTAATGTTTGAACCCTACCTATGAGGAATGGAAACAGTGATGATCGTATTGGTCCATACCACGGACAATTCAAGTTTGAACCCTACCTATGAGGAATGGAAACAGTAACGGATTGACAGATCCCAGCAGGGATCCACCCTGGTTTGAACCCTACCTATGAGGAATGGAAACCGTGTGTCTGTATGCAGTAGATAGTACTTGGAAAGTTGTTTGAACCCTACCTATGAGGAATGGAAACGTTTCTACCAAATGGACCACAACCTGCTCGTTGAAGCAGGTTTGAACCCTACCTATGAGGAATGGAAACTACCGAAATAAGGTTCTCGGCGGCTTTGGCCGCGATTACCCGTTTGAACCCTACCTATGAGGAATGGAAACCCCAATTTAAACGTTGAAACCGTGCTGAATAAAGGGTTTGAACCCTACCCATGAGGAGTGGAAAC

>NC_015707|5|5|1182746-1183303|PILER-CR
GTTTGGACACTACCTATGAGGAATGGAAAC	AGTTCTTCTTCCAATGCCAATGCCGGAAGACTGTCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CAGCATACAGCATTGCACCAACAACATCGGAATCTG
GTTTGGACACTACCTATGAGGAATGGAAAC	GCATACCAATTCACAAAACTTTGGTACTTTTCCAATT
GTTTGGACACTACCTATGAGGAATGGAAAC	GGGAATGTGGTACAATTATTTATGAGCGCATAATTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGCCGTATTCGTTCATACCAACTATAATCCAGTCAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	AATCCTGCCGGGACATATTCGCTTTTAACACCTAC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGTTTTAGCGCCCTGATTTTGGGCGCAGATTTAGT
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTTTTAGCATAAACATCACTTTCTAATAAAGAAA
GTTTGGACACTACCTATGAGGAATGGAAACCTTTTCTTGATTGCATATAGTGCTACGTTTGCAAGAGTTTGAACCCTACCTATGAGGAATGGAAAC	CCAGAAAAGCAGGAAGGCGTTTACTATATTGTATCGC
GTTTGAACCCTACCTATGAGGAATGGAAAC	TCGAAATCTGCAGAAAGGTTGTTTCTCGAGTAAGTG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTTAAACATCCAATCGAGAAAAAACTTATCTTCCCAGTCGG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGAGTTCCTCGTCGTTTACAGAACCACTCACATCTA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGAGCGACCACGACGGAATGTGGAAATCTGTATAG
GTTTGAACCCTACCTATGAGGAATGGAAAC	CTCTATAAACAATTCAAAAACGAAATCCATCAATACC
GTTTGAACCCTACCTATGAGGAATGGAAAC	TATTAGAAAGTTGGTCGTGGTGTGATATAAGATATA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTTTCAACCAACCAGACCGCAACCCGCTCGTTAATGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTTTCATACCTTTGACCTTTCCCGGAACACCATCGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTCGTTTCCAGTACGAACCTGAACATCCTGAACCCCTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	CTTCTGAGATTTTGCGCCCGCCATGGGTATGGGGGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGGAATTTCTCCCTGGTATCTGTGACAAGTAAAAA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TAAGCCTCCTGCGGCTATTTCATCACCAATATTTTCAC
GTTTGAACCCTACCTATGAGGAATGGAAAC	ATACGCACTAACATTTTCCGCAATCCAATTTGTAAT
GTTTGAACCCTACCTATGAGGAATGGAAAC	AGTGATGATCGTATTGGTCCATACCACGGACAATTCAA
GTTTGAACCCTACCTATGAGGAATGGAAAC	AGTAACGGATTGACAGATCCCAGCAGGGATCCACCCTG
GTTTGAACCCTACCTATGAGGAATGGAAAC	CGTGTGTCTGTATGCAGTAGATAGTACTTGGAAAGTT
GTTTGAACCCTACCTATGAGGAATGGAAAC	GTTTCTACCAAATGGACCACAACCTGCTCGTTGAAGCAG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TACCGAAATAAGGTTCTCGGCGGCTTTGGCCGCGATTACCC


>NC_015707|5|5|1182746-1184713|CRISPRCasFinder
GTTTGGACACTACCTATGAGGAATGGAAAC	AGTTCTTCTTCCAATGCCAATGCCGGAAGACTGTCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CAGCATACAGCATTGCACCAACAACATCGGAATCTG
GTTTGGACACTACCTATGAGGAATGGAAAC	GCATACCAATTCACAAAACTTTGGTACTTTTCCAATT
GTTTGGACACTACCTATGAGGAATGGAAAC	GGGAATGTGGTACAATTATTTATGAGCGCATAATTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGCCGTATTCGTTCATACCAACTATAATCCAGTCAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	AATCCTGCCGGGACATATTCGCTTTTAACACCTAC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGTTTTAGCGCCCTGATTTTGGGCGCAGATTTAGT
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTTTTAGCATAAACATCACTTTCTAATAAAGAAA
GTTTGGACACTACCTATGAGGAATGGAAAC	CTTTTCTTGATTGCATATAGTGCTACGTTTGCAAGA
GTTTGAACCCTACCTATGAGGAATGGAAAC	CCAGAAAAGCAGGAAGGCGTTTACTATATTGTATCGC
GTTTGAACCCTACCTATGAGGAATGGAAAC	TCGAAATCTGCAGAAAGGTTGTTTCTCGAGTAAGTG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTTAAACATCCAATCGAGAAAAAACTTATCTTCCCAGTCGG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGAGTTCCTCGTCGTTTACAGAACCACTCACATCTA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGAGCGACCACGACGGAATGTGGAAATCTGTATAG
GTTTGAACCCTACCTATGAGGAATGGAAAC	CTCTATAAACAATTCAAAAACGAAATCCATCAATACC
GTTTGAACCCTACCTATGAGGAATGGAAAC	TATTAGAAAGTTGGTCGTGGTGTGATATAAGATATA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTTTCAACCAACCAGACCGCAACCCGCTCGTTAATGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTTTCATACCTTTGACCTTTCCCGGAACACCATCGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTCGTTTCCAGTACGAACCTGAACATCCTGAACCCCTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	CTTCTGAGATTTTGCGCCCGCCATGGGTATGGGGGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGGAATTTCTCCCTGGTATCTGTGACAAGTAAAAA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TAAGCCTCCTGCGGCTATTTCATCACCAATATTTTCAC
GTTTGAACCCTACCTATGAGGAATGGAAAC	ATACGCACTAACATTTTCCGCAATCCAATTTGTAAT
GTTTGAACCCTACCTATGAGGAATGGAAAC	AGTGATGATCGTATTGGTCCATACCACGGACAATTCAA
GTTTGAACCCTACCTATGAGGAATGGAAAC	AGTAACGGATTGACAGATCCCAGCAGGGATCCACCCTG
GTTTGAACCCTACCTATGAGGAATGGAAAC	CGTGTGTCTGTATGCAGTAGATAGTACTTGGAAAGTT
GTTTGAACCCTACCTATGAGGAATGGAAAC	GTTTCTACCAAATGGACCACAACCTGCTCGTTGAAGCAG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TACCGAAATAAGGTTCTCGGCGGCTTTGGCCGCGATTACCC
GTTTGAACCCTACCTATGAGGAATGGAAAC	CCCAATTTAAACGTTGAAACCGTGCTGAATAAAGG
GTTTGAACCCTACCCATGAGGAGTGGAAAC

>NC_015707|5|5|1182746-1184713|CRT
GTTTGGACACTACCTATGAGGAATGGAAAC	AGTTCTTCTTCCAATGCCAATGCCGGAAGACTGTCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CAGCATACAGCATTGCACCAACAACATCGGAATCTG
GTTTGGACACTACCTATGAGGAATGGAAAC	GCATACCAATTCACAAAACTTTGGTACTTTTCCAATT
GTTTGGACACTACCTATGAGGAATGGAAAC	GGGAATGTGGTACAATTATTTATGAGCGCATAATTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGCCGTATTCGTTCATACCAACTATAATCCAGTCAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	AATCCTGCCGGGACATATTCGCTTTTAACACCTAC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGTTTTAGCGCCCTGATTTTGGGCGCAGATTTAGT
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTTTTAGCATAAACATCACTTTCTAATAAAGAAA
GTTTGGACACTACCTATGAGGAATGGAAAC	CTTTTCTTGATTGCATATAGTGCTACGTTTGCAAGA
GTTTGAACCCTACCTATGAGGAATGGAAAC	CCAGAAAAGCAGGAAGGCGTTTACTATATTGTATCGC
GTTTGAACCCTACCTATGAGGAATGGAAAC	TCGAAATCTGCAGAAAGGTTGTTTCTCGAGTAAGTG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTTAAACATCCAATCGAGAAAAAACTTATCTTCCCAGTCGG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGAGTTCCTCGTCGTTTACAGAACCACTCACATCTA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGAGCGACCACGACGGAATGTGGAAATCTGTATAG
GTTTGAACCCTACCTATGAGGAATGGAAAC	CTCTATAAACAATTCAAAAACGAAATCCATCAATACC
GTTTGAACCCTACCTATGAGGAATGGAAAC	TATTAGAAAGTTGGTCGTGGTGTGATATAAGATATA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTTTCAACCAACCAGACCGCAACCCGCTCGTTAATGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTTTCATACCTTTGACCTTTCCCGGAACACCATCGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTCGTTTCCAGTACGAACCTGAACATCCTGAACCCCTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	CTTCTGAGATTTTGCGCCCGCCATGGGTATGGGGGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGGAATTTCTCCCTGGTATCTGTGACAAGTAAAAA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TAAGCCTCCTGCGGCTATTTCATCACCAATATTTTCAC
GTTTGAACCCTACCTATGAGGAATGGAAAC	ATACGCACTAACATTTTCCGCAATCCAATTTGTAAT
GTTTGAACCCTACCTATGAGGAATGGAAAC	AGTGATGATCGTATTGGTCCATACCACGGACAATTCAA
GTTTGAACCCTACCTATGAGGAATGGAAAC	AGTAACGGATTGACAGATCCCAGCAGGGATCCACCCTG
GTTTGAACCCTACCTATGAGGAATGGAAAC	CGTGTGTCTGTATGCAGTAGATAGTACTTGGAAAGTT
GTTTGAACCCTACCTATGAGGAATGGAAAC	GTTTCTACCAAATGGACCACAACCTGCTCGTTGAAGCAG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TACCGAAATAAGGTTCTCGGCGGCTTTGGCCGCGATTACCC
GTTTGAACCCTACCTATGAGGAATGGAAAC	CCCAATTTAAACGTTGAAACCGTGCTGAATAAAGG
GTTTGAACCCTACCCATGAGGAGTGGAAAC

>NC_015707|5|6|1183340-1184648|PILER-CR
	AGTTCTTCTTCCAATGCCAATGCCGGAAGACTGTCC
GTTTGGACACTACCTATGAGGAATGGAAAC	CAGCATACAGCATTGCACCAACAACATCGGAATCTG
GTTTGGACACTACCTATGAGGAATGGAAAC	GCATACCAATTCACAAAACTTTGGTACTTTTCCAATT
GTTTGGACACTACCTATGAGGAATGGAAAC	GGGAATGTGGTACAATTATTTATGAGCGCATAATTA
GTTTGGACACTACCTATGAGGAATGGAAAC	TGCCGTATTCGTTCATACCAACTATAATCCAGTCAAG
GTTTGGACACTACCTATGAGGAATGGAAAC	AATCCTGCCGGGACATATTCGCTTTTAACACCTAC
GTTTGGACACTACCTATGAGGAATGGAAAC	TTGTTTTAGCGCCCTGATTTTGGGCGCAGATTTAGT
GTTTGGACACTACCTATGAGGAATGGAAAC	TTTTTTAGCATAAACATCACTTTCTAATAAAGAAA
GTTTGGACACTACCTATGAGGAATGGAAACCTTTTCTTGATTGCATATAGTGCTACGTTTGCAAGAGTTTGAACCCTACCTATGAGGAATGGAAAC	CCAGAAAAGCAGGAAGGCGTTTACTATATTGTATCGC
GTTTGAACCCTACCTATGAGGAATGGAAAC	TCGAAATCTGCAGAAAGGTTGTTTCTCGAGTAAGTG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTTAAACATCCAATCGAGAAAAAACTTATCTTCCCAGTCGG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGAGTTCCTCGTCGTTTACAGAACCACTCACATCTA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTGAGCGACCACGACGGAATGTGGAAATCTGTATAG
GTTTGAACCCTACCTATGAGGAATGGAAAC	CTCTATAAACAATTCAAAAACGAAATCCATCAATACC
GTTTGAACCCTACCTATGAGGAATGGAAAC	TATTAGAAAGTTGGTCGTGGTGTGATATAAGATATA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TTTTCAACCAACCAGACCGCAACCCGCTCGTTAATGC
GTTTGAACCCTACCTATAAGGAATGGAAAC	GTTTCATACCTTTGACCTTTCCCGGAACACCATCGA
GTTTGAACCCTACCTATAAGGAATGGAAAC	TTCGTTTCCAGTACGAACCTGAACATCCTGAACCCCTG
GTTTGAACCCTACCTATAAGGAATGGAAAC	CTTCTGAGATTTTGCGCCCGCCATGGGTATGGGGGG
GTTTGAACCCTACCTATAAGGAATGGAAAC	GGGAATTTCTCCCTGGTATCTGTGACAAGTAAAAA
GTTTGAACCCTACCTATGAGGAATGGAAAC	TAAGCCTCCTGCGGCTATTTCATCACCAATATTTTCAC
GTTTGAACCCTACCTATGAGGAATGGAAAC	ATACGCACTAACATTTTCCGCAATCCAATTTGTAAT
GTTTGAACCCTACCTATGAGGAATGGAAAC	AGTGATGATCGTATTGGTCCATACCACGGACAATTCAA
GTTTGAACCCTACCTATGAGGAATGGAAAC	AGTAACGGATTGACAGATCCCAGCAGGGATCCACCCTG
GTTTGAACCCTACCTATGAGGAATGGAAAC	CGTGTGTCTGTATGCAGTAGATAGTACTTGGAAAGTT
GTTTGAACCCTACCTATGAGGAATGGAAAC	GTTTCTACCAAATGGACCACAACCTGCTCGTTGAAGCAG
GTTTGAACCCTACCTATGAGGAATGGAAAC	TACCGAAATAAGGTTCTCGGCGGCTTTGGCCGCGATTACCC
GTTTGAACCCTACCTATGAGGAATGGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015707.1|WP_157723315.1|1173139_1173643_+|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	unknown
NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl|CDD|378186
NC_015707.1|WP_013932482.1|1181233_1182478_+|hypothetical-protein	unknown	unknown	gnl|CDD|276809
NC_015707.1|WP_013932487.1|1190440_1190941_+|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_083815682.1|1175293_1175524_+|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|379311
NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl|CDD|187793
NC_015707.1|WP_013932485.1|1187510_1189196_+|M3-family-oligoendopeptidase	unknown	unknown	gnl|CDD|341069
NC_015707.1|WP_013932486.1|1189566_1190388_+|DegV-family-protein	unknown	unknown	gnl|CDD|273257
NC_015707.1|WP_013932477.1|1178433_1179072_+|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932491.1|1193832_1194495_-|thioredoxin-family-protein	unknown	unknown	gnl|CDD|274021
NC_015707.1|WP_013932475.1|1175096_1175321_+|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|379311
NC_015707.1|WP_013932479.1|1179307_1179727_+|DUF1232-domain-containing-protein	unknown	unknown	gnl|CDD|377712
NC_015707.1|WP_013932489.1|1191619_1192888_+|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NC_015707.1|WP_013932488.1|1190942_1191623_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NC_015707.1|WP_013932484.1|1186864_1187443_-|HAD-IA-family-hydrolase	unknown	unknown	gnl|CDD|319790
NC_015707.1|WP_013932483.1|1185249_1186602_+|ATP-binding-protein	unknown	unknown	gnl|CDD|224586
NC_015707.1|WP_157723316.1|1180159_1181212_+|DUF1998-domain-containing-protein	unknown	unknown	gnl|CDD|378167
NC_015707.1|WP_013932490.1|1192884_1193829_-|thioredoxin-disulfide-reductase	unknown	unknown	gnl|CDD|273540
NC_015707.1|WP_157723317.1|1194559_1195069_-|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932478.1|1179100_1179286_+|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015707.1|WP_157723315.1|1173139_1173643_+|hypothetical-protein	cas6	mkCas0062_cas6_CAS-I:CAS-III	1.5e-78	257.8	0.6
NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	5.1e-77	254.1	0.3
NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	2e-34	114.1	1.9

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015707.1|WP_013932491.1|1193832_1194495_-|thioredoxin-family-protein	gnl|CDD|274021	TIGR02187, glutaredoxin-like_protein, Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.	1.72234e-81
NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein	gnl|CDD|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	9.45442e-75
NC_015707.1|WP_013932482.1|1181233_1182478_+|hypothetical-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.40818e-06
NC_015707.1|WP_083815682.1|1175293_1175524_+|HEAT-repeat-domain-containing-protein	gnl|CDD|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	2.92787e-16
NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl|CDD|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.52475e-27
NC_015707.1|WP_013932486.1|1189566_1190388_+|DegV-family-protein	gnl|CDD|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	9.17928e-67
NC_015707.1|WP_013932485.1|1187510_1189196_+|M3-family-oligoendopeptidase	gnl|CDD|341069	cd09606, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3 oligopeptidase F (oligendopeptidase) is mostly bacterial and includes oligoendopeptidase F from Geobacillus stearothermophilus. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids and may cleave proteins at Leu-Gly. The PepF gene is duplicated in Lactococcus lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid.	0
NC_015707.1|WP_157723316.1|1180159_1181212_+|DUF1998-domain-containing-protein	gnl|CDD|378167	pfam09369, DUF1998, Domain of unknown function (DUF1998). This family of proteins are functionally uncharacterized. They are mainly found in helicase proteins so could be RNA binding. This family includes a probable zinc binding motif at its C-terminus.	2.41205e-06
NC_015707.1|WP_013932479.1|1179307_1179727_+|DUF1232-domain-containing-protein	gnl|CDD|377712	pfam06803, DUF1232, Protein of unknown function (DUF1232). This family represents a conserved region of approximately 60 residues within a number of hypothetical bacterial and archaeal proteins of unknown function.	3.52807e-09
NC_015707.1|WP_013932489.1|1191619_1192888_+|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.92869e-41
NC_015707.1|WP_013932484.1|1186864_1187443_-|HAD-IA-family-hydrolase	gnl|CDD|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.97239e-30
NC_015707.1|WP_013932483.1|1185249_1186602_+|ATP-binding-protein	gnl|CDD|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	2.33814e-26
NC_015707.1|WP_013932475.1|1175096_1175321_+|HEAT-repeat-domain-containing-protein	gnl|CDD|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	6.14675e-10
NC_015707.1|WP_013932490.1|1192884_1193829_-|thioredoxin-disulfide-reductase	gnl|CDD|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	3.67195e-134
NC_015707.1|WP_013932488.1|1190942_1191623_+|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.91314e-84

Protein sequences

>NC_015707.1|WP_013932482.1|1181233_1182478_+|hypothetical-protein
MNQQPKRSNQMLREMYNSLKTHLNAKDFQKAYEIATAILNENDPFWTKQVNRYLPWILFNLKLKSQRISLEELHQTVETIVTLSERKNGFVLRSVSILASETLKKADRKKGLQILQSANELLDKINVDELSDKPLESSKYKDKAGKNKVLPSEREKWYQLKTKILLVLKKYDECIQQCRNALKVSNLIDPVWFYYRIACASSYIGKYEEGLEALEKVLLYKDDWYVQKLFFEIYAKMKDFDNALKYGCRTALNSASDSQKLTFYLNFADFLKAHNYKREADLHYYLYLKTLEKMKDGQKNDTNVKRVYGSLTDKNVVKMREQDVRSELAKFWKDNKFRNEKQLEGTVAKVINNGAGFIKSSDSQSYYFKLEDVENAPKSAHELRNKKVKFYPTKSYDKKKGMESWAAVGIVVVE
>NC_015707.1|WP_157723316.1|1180159_1181212_+|DUF1998-domain-containing-protein
MLVNRTLLTYKFIHYKIEESDVPRKRKKYIYDRYVEVKCSSFDVQEDSNEKSPMKFWLAKKCRIRYINNGRECGKRIAGKSNYNVIPFEVKTEDGNLTGAIGCEIARDCLVIRFDKRFFNYTMVINLCSAVCKAIEKLFNYGENELFFLVDEKMNLNDSDHIFALFYDRTGNEEIEFETIAENFMDILKVAYDSLNTCNCVKGCTNCMAIRRVDYEYIFDKQKAIKALKLSIFERDETTKYCDEESAVVEEVTVISEPNTGKFRVQSSLINREFEYYESTLDKQKKVNLEYKNLAKILKLYCGRADEIVIKSKQQWVVEKINFLTSSDDTYIDEFCFYRLAYKNVVGIKI
>NC_015707.1|WP_013932479.1|1179307_1179727_+|DUF1232-domain-containing-protein
MASLGDFFNRLKNLVSNKRLDELFNEVLRYLRRYHVPEIVYIVRRFMVFLRLIGKPKALLIASLVLGYVLLPLDLCPDFIPFFGLLDDVLLIITAMEMIAAGVYNFQTIFRRMIKRFQQQRIKQKPSREIYRKLIQLGC
>NC_015707.1|WP_013932478.1|1179100_1179286_+|hypothetical-protein
MKNFLHALRSIGLISIAVILLIALPVIIIVTTYIFGIFVVCLAVFFIVKGILGLKELKQRK
>NC_015707.1|WP_013932477.1|1178433_1179072_+|hypothetical-protein
MVKPIYALSDEEYQRLKDLSGMDNEGRLPMMLEPLDFESDVEAYFKIFGVLAQTQQEVLVIGTAIIKNKKKQKTIKMLTRALIKPGCIVYKTPIVINEVDSIMKTMSENTDLEVYSNEDNYLGLMKGGSSVVSDFLKALSKFSEVTEDALNVLHLSVQELESLANLLPTERGYTIEVQNLRDEAQEAFKKIYGLIVKATELYVRMSKSMVEE
>NC_015707.1|WP_083815682.1|1175293_1175524_+|HEAT-repeat-domain-containing-protein
MSAEALGRIGDPKAVEPLIERLKDSDPYVRKSTAEALGKIGDSRAVEPLIQALKDDDENVRSSASKALEKITGQKY
>NC_015707.1|WP_013932475.1|1175096_1175321_+|HEAT-repeat-domain-containing-protein
MFENQQTNQFSEIASSKGIEKLIQALEDGDWRIRRLAAETLGKTGDPKAVEPLIQALEDNDSILRKLALKLLVE
>NC_015707.1|WP_013932474.1|1173664_1174900_+|TIGR02221-family-CRISPR-associated-protein
MKALCFLGTGKYQAVTYTWVDTDGNAKSYSTELFPEAVYHIFEPSMVYVFVTKEAKERYLPKLQERLKDKLYPVDIPDGKSEGQLWEIFEKCADIVKDGDEIILDITHAFRSLPLIVFTVAMYLRQTKNVTVKHIVYGAFEARDENNCAPIFDLTAMVDLLDWINGVNAFVNYAAAEIFAEKLVHTQKKLRMGGGTISSELPTHLQEIGKKLRTLSLNLHMNRPIEVMKDANDLLSMLGRAQAELQTWAKPFAAIAKTLSKEISELAYAEAEKLTKQNLEKQLAIIAYCIRKNLIIQALTLARELAINCLFFSCGMKDRWLKQREREEIEKLINSYAQEQREESQKDGRIEPSCPDELKASLGRIWKDISTVRNDIAHCGMRESPIRADTAVEKAKGIYDELRRLLDHISE
>NC_015707.1|WP_157723315.1|1173139_1173643_+|hypothetical-protein
MKTDIFSISPIITKNKKEVQDGLWVFKDFRVYLVSPFIESVGRNFVDFHEILNAYHEGIELSQVVLRSAPVRKTGKLLSGVFANLDGRCIDYEQSPELFSECLRQYLLQIHKLKYGTIPDDVRFFIRLKGEIRKQKLLADRLEFFGDVQIFSSDELAKTFCEMFSLR
>NC_015707.1|WP_013932472.1|1171889_1173014_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MITHSKTYEITVLTPLFICSDLRDKLTEIDFFLENGKIVVIDFDKLLSLTKNNERLLDEILLGLEGSVASFDLKRILQKYQIKVEQCKRYAMNFRGTFPSGTRKEIACFVKTAGKVYIPGSSLKGAIRSFITKALQKKFIALYDNEIARVKTNDKISDAGVERQVFGDPYASVFKYLQISDSNPISPENLEVFEVKILNICNGRAKWYAKPQNVENPKDALSNFVEGLPSKMSVTGSIKIDPQFVEKLKEKVEVQVDDPVKFLAKLINHAAKHYIENEMNFYKKYGIYEIADLYQKILDNMPKLRENEFILQVGFSTGYLSKTVGMLLKPDSLKRVAEIAYRNAKPELFPKTRRIVFNNGKILAIPGWIRVKIM
>NC_015707.1|WP_013932483.1|1185249_1186602_+|ATP-binding-protein
MLINREKECEFLRKKVASNKAELLVIYGRRRVGKTFLLQNCLQNALFFTADLSNNLQLMNRFLDEIKDILKLPPTLRISSWDEFFALLKNVFESRNNLKTIVFDEFQYIPMRDESFMSIFQRWWDEVFSKMKVKIILCGSYVGIIEKIALSQNSPLYGRRTGQYEILPLDFFDSIKFLSFESKEDYVKAYSITDGIPIYLLEFAEYKDFETALMEKILSPGEFLVDEGKFITLEEFNDPSNYFSILVSIANGKTTPNEIAADSGVDYKSINVYLSKLVDLKFVEKEFPFSISKKPKQKPHYRISDEYLRFYFRYLHVYKDLIHRGKKEEVKEKILASFDQHVSFTFEKIARQHLLRKFGVEKVGRWWSKDVEIDLVAIKNDILYVGECKWTNKKVDNRTLNKLKGKVPYLLKELQMDNLNVVYCLYSKSGFENLKESEELKLIDLEEIFK
>NC_015707.1|WP_013932484.1|1186864_1187443_-|HAD-IA-family-hydrolase
MKLFIFDVGNVVYSNTSVAPKIAKYLGITLEEFLKLAKSSGLDLLQKGLISVEDFWSNFSKLFGKSISEDLWAKFFDPLPIDGTIELIKKLRKHFRVVAGTNTILSHYEIHLKKGHYDIFDAVYASHVIHYTKPDPNFFMYILKSENAAPEETFFTDDDPKNVQCALALKINAFVFTDPKELESKLKQLLGH
>NC_015707.1|WP_013932485.1|1187510_1189196_+|M3-family-oligoendopeptidase
MKFSEFVYQRPNVDQLEEKLRNLIESFKKANSFEQARDILNQINQLRNDFSTASAIATIRYCMNTLDDFYKKEKEYFDEASPRMEGVIVELYKALVSSPFKDQLQKEFGNQLFTIAQLQTKTFKPEVLEDLILENKLGTEYSNLVSSAKIPFEGQNLTLPQVAAFMQVADRQVRKKAAEAYFSFFERNEEKTDKIYDQLVEVRTKIAHKLGYENFVQLAYDRLGRSDYNPKMVAKFREAIKKYIVPVVSELREEQRKRLEVDVLKYYDFSVVLKEGNPKPKGEPDEIIQKARQMYEEMSPETGEFFNFMLEDELMDLKSREGKYPGGFCHFIPNYKSPFIFANFNGTQDDVEVLTHEAGHAFQVYRSRNFTVPEYYWPTTESCEIHSMSMEFFAWPWLELFYGQDAEKAKFVHLSSALFFIPYGTLVDEFQHLVYENPSMTPQQRKKLWRSLEKIYMPELDYDGNKFLENGGRWHRQTHIFESPFYYIDYVLAQICAFQFWIKWEENRKKAFEDYLKLCDAGGSKSFMELVKLANLSSPFEEETIKKVAEKVVLWLEKQKI
>NC_015707.1|WP_013932486.1|1189566_1190388_+|DegV-family-protein
MNCAIVVDSTIDIPEDYVCPIPLYILPLRIFIDNKEYKDRVDISCEEIYEELEKGKKITTSLPSPSDALSLLQKLSKQFEQIVVLTVSSKLSGTFNMIKMLVEQMSLKKVNVFDTKAVSGKIFHIVQRVAADLLKGEKITQEKILEYNKSSLMLFVLNSLEYLKKGGRIGKLSAFMGKLFNLKPILSIDEEGEVYKVTTAKSEEQMIDKIVELVERFAPDRRTVYAGYGKKTMERLVFKLQEKLGKIAGLARIGPAVAAHAGPETFGVLVVKE
>NC_015707.1|WP_013932487.1|1190440_1190941_+|hypothetical-protein
MRKIFVLILVCISLVNFSQDFLARIKEIQAFYDALDLSLVKVSILDAVRISGIKDPMVCYLDLSKDEYVWVVLSVVERVEISAIDGRMLARSTLKMDNYSYSINLQNAISLAILSIGKNVLFAYPTHEGWIVGTKEKVAAVSMKTTAVIWIKDRREYFESLKVQGG
>NC_015707.1|WP_013932488.1|1190942_1191623_+|response-regulator-transcription-factor
MRILIVEDNEDLLKTVKKFLEKEGYVVDTATDGDEGLDKAFENRYDCIVLDIMLPGIDGFEFVKALRESGIEVPVLMLTALDAVEDKVKGLSLGADDYLTKPFDLRELSARIASLIRRSQMVKGEELKFKDLKINTKAKSVRIKDVELKLSKREYELLEFFLRNPNVVFTREEILEKVWQNERYIRSNVVDVYISYLRNKLRDFGYDKYIETVPTLGYRFRWEERL
>NC_015707.1|WP_013932489.1|1191619_1192888_+|HAMP-domain-containing-histidine-kinase
MKSLRKSIEKFYLSILIISLCSIALVLFFVVERLSINQIDRELEYFMADLIRYLEEPTKEPVALFGKRDVGFLVVEDGKTIASFQIPSDLIFQLVSFQEGFRFFSGYKVFVKPFEVYKVIIVKSTKQRNTMLLTLAFSLISTLVGVILLAMYFGSKLVEKLVKPIEDIGLQMDEVSKGLREKIEVQATSKEVFKLQTQINEALDRLKKTMEELRSFASYLSHQLRNPLASAKAQVEFLLSYQEHSQELESVLKNLNKMVRIIEGLLLLARIQHQKEGNFVQEDLSSILMESLEQLMQKFPHIEFELDIQPKVTFSCIKDLMEHVFTNLVENACKYCEGSNQVFVRLYKDDSTVIFKVENFGRAIPEEERNKIFERFFRGSKTKGEGLGLGLPIAKAIVELHKGQIRYYHDQGKNVFEVLFND
>NC_015707.1|WP_013932490.1|1192884_1193829_-|thioredoxin-disulfide-reductase
MFFDFQFAKQIKDYYDVVIVGGGPAALGAAVYARRAGLSVLVVEKVLEGGQLNFTTTIDNYLGFPNIEGKELASKMKEHAEYLGTEFLNETVEEVILNGDLKAIRTDSERIVSGKVLMIATGAEPKKLSVEGEKELAGKGVSYCATCDGYFFKDKKVAVVGGGDTAISDALYLARIAESVTVIHRRDKLRAVKSLQEKAFATPKIKFMWDTVVEKFEGDQYLRAVVVKNVKTGETSKLEVDGVFIAIGLTPNSGLVKDIVQLDEQGYIITNEWMETSVKGIYAIGDVRKKNVRQIITAVADGAIAAIHAAENYF
>NC_015707.1|WP_013932491.1|1193832_1194495_-|thioredoxin-family-protein
MALLSEKDVQYLKRAFEEQLKDKVKILLFVDDATECEYCDLTNQVLNELASIDNRIEVTTYHIKRDKEVAQRYNIDKTPAIVMLDKNGNDTRIRFFGIPSGHEFSTLLQDIVAVSTGKPVLFNQKQIEEIKSINKPVNIKVFVTPTCPYCPKAVLLAHMAALVNPNIVGEMIEANEFPELSIRYGIASVPHTFINDKVDFIGAYPEGAFIRELLRAVGGA
>NC_015707.1|WP_157723317.1|1194559_1195069_-|hypothetical-protein
MMEIVTDLILGLICSSIGIVGALLLAWLQFTETVIFSLSPFSSINFLVVTGLLIMYNSSFSKNSIGSVVIYCIIAFLYHIGRITEYLEKEDKRFRILFLSFGYTKKEYVGMYLFRKSTHRNLSSLLSCWGLLTTGLVLSDFYANASGKLILGGLLIILGFTSALLDRKE

Crispr_ID: NC_015707_6

• CRISPR_ID: NC_015707_6
• CRISPR_location: 1714941-1717563
• CRISPR_type: TypeI-B
• Repeat_type: III-A
• Spacer_info: 39 spacers
• Cas_protein_info: cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6

Consensus repeat of NC_015707_6

Consensus_repeat	Method
GTTTCAATCGAACTTAAGAGGGATGGAAAC	PILER-CR
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CRISPRCasFinder
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CRT

spacers of NC_015707_6

>6.1|1714971|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATGTGCGTGAATTTCCACGCCACTTTACTGCCTCCTG
>6.2|1715038|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CGCTTGTTGGTATACAACAGACTCAAATGCTGGCATG
>6.3|1715105|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CGGTTATAGTGCGCCGGGCAGGTATACGGTATCGAT
>6.4|1715171|38|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CAGGTTGCCTACCGAAGTGTATGGACACATTGAATTGT
>6.5|1715239|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGCTAAGTGCGCTTGAAAAAATTTATATGAATTTAA
>6.6|1715305|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CTCAAGAAGACACAACATTGTTTGTTGCAGCCTGCAC
>6.7|1715372|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACGCCTTTTTCAAATGTTTTCTTCTCATTCCTTGGC
>6.8|1715438|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ATGTGTGTAGTCGATCTTATTGTCCGAAAGCCACCTT
>6.9|1715505|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CGACTATGATACGTACTTGTTCGTTTTGGCTAAAGAA
>6.10|1715572|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CCGTTCCTTCATGATTACCTCTAAAAACTCCCACTC
>6.11|1715638|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACTTTAACCTTCCTTTTACATTTCATTAACCCAAAT
>6.12|1715704|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GATTTTTTTTGAGGACATTAATCATACCCCCTTGTAA
>6.13|1715771|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GGAGCATAAATACTGCTTTTTCGAGGTTGTACATTC
>6.14|1715837|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TATACTTCTTCTTCAACGAAGTCGTAAGATCCTACA
>6.15|1715903|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GGCGACTTAGTAGCACAACTAGAATACTTAGATAGAG
>6.16|1715970|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TAGTTCAAAACGTGTTATTCCGGATCGTAATTCTTT
>6.17|1716036|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CTTTTTCAAGAGATTAAGCAACTGCAGGAAGAAGTTC
>6.18|1716103|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACCAGTCTGCGCTGCACGGAAAATCGATATAATCTTC
>6.19|1716170|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AAATGTGATTGAAATAAGGGAGGCGTGAGCCTCCCTT
>6.20|1716237|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACGATTCTGTAACTTGACAAGTTATAGATAAGGTATA
>6.21|1716304|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CATAGCCCCTTGTCACTTATCGCCAATATTTTTTTA
>6.22|1716370|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TATTGTCTGCAAGATATTACATGGCACAAGCTTGCC
>6.23|1716436|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GCGTGCCTATGCTGTTGAAGCTCAGCCACGAATAGTG
>6.24|1716503|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AATGGCATTTGCTCGGTTTCTCCTTCTCCGAATACC
>6.25|1716569|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GATTTTCTTTGAGGACATTAATCATACCCCCTTGTAA
>6.26|1716636|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CCTTGCCGGTGTAGAGAACCGCTTTTCGGTCTAAAT
>6.27|1716702|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CCGTGTTTGGTAGCTTGCCATATTGAAGCTCAAGGT
>6.28|1716768|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTGGCACAATGTAACACCTTACCGTTCCGCTGCGTT
>6.29|1716834|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACCATTTCGTTTCCAACATTTTACTTTTTCTTAACA
>6.30|1716900|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
AATCGTGGCCGCATATGCACATGTCATTGAGGGAACA
>6.31|1716967|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TGAACCTGATTTACTTTATGGTACTGATCGGCGTTAA
>6.32|1717034|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTGCGTGTTCTCTCGAATACATTTGCGCTATTACGAT
>6.33|1717101|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CTAGAACCTAATGTTGAAAGAGATGTGTGCTTCTGG
>6.34|1717167|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CAAACCACCGGTGGCTTAAGTCCCCTTGCAACTAAC
>6.35|1717233|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
GTTTCGAGCAGAAATATGTCTACCCGCTCCGCTACCC
>6.36|1717300|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CAGTGATCCCAAGCGAGTAATCGTGACAACATGTTCA
>6.37|1717367|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
TTCTGCTCAAGCCACTTTTCTGTCGAAAGGTGGCGC
>6.38|1717433|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT
ACATTTGCAGAAATGCGATACGAAATAAGAGACGGA
>6.39|1717499|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT
CAGACGGGGTGAAAAAGAGGAGGGGTTTAGATGTA

CRISPR arrays and Neighbor proteins around NC_015707_6

CRISPR arrays

The CRISPR arrays of NC_015707_6

>merge|NC_015707|6|1714941-1717563|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCGAACTTAAGAGGGATGGAAACATGTGCGTGAATTTCCACGCCACTTTACTGCCTCCTGGTTTCAATCGAACTTAAGAGGGATGGAAACCGCTTGTTGGTATACAACAGACTCAAATGCTGGCATGGTTTCAATCGAACTTAAGAGGGATGGAAACCGGTTATAGTGCGCCGGGCAGGTATACGGTATCGATGTTTCAATCGAACTTAAGAGGGATGGAAACCAGGTTGCCTACCGAAGTGTATGGACACATTGAATTGTGTTTCAATCGAACTTAAGAGGGATGGAAACTGCTAAGTGCGCTTGAAAAAATTTATATGAATTTAAGTTTCAATCGAACTTAAGAGGGATGGAAACCTCAAGAAGACACAACATTGTTTGTTGCAGCCTGCACGTTTCAATCGAACTTAAGAGGGATGGAAACACGCCTTTTTCAAATGTTTTCTTCTCATTCCTTGGCGTTTCAATCGAACTTAAGAGGGATGGAAACATGTGTGTAGTCGATCTTATTGTCCGAAAGCCACCTTGTTTCAATCGAACTTAAGAGGGATGGAAACCGACTATGATACGTACTTGTTCGTTTTGGCTAAAGAAGTTTCAATCGAACTTAAGAGGGATGGAAACCCGTTCCTTCATGATTACCTCTAAAAACTCCCACTCGTTTCAATCGAACTTAAGAGGGATGGAAACACTTTAACCTTCCTTTTACATTTCATTAACCCAAATGTTTCAATCGAACTTAAGAGGGATGGAAACGATTTTTTTTGAGGACATTAATCATACCCCCTTGTAAGTTTCAATCGAACTTAAGAGGGATGGAAACGGAGCATAAATACTGCTTTTTCGAGGTTGTACATTCGTTTCAATCGAACTTAAGAGGGATGGAAACTATACTTCTTCTTCAACGAAGTCGTAAGATCCTACAGTTTCAATCGAACTTAAGAGGGATGGAAACGGCGACTTAGTAGCACAACTAGAATACTTAGATAGAGGTTTCAATCGAACTTAAGAGGGATGGAAACTAGTTCAAAACGTGTTATTCCGGATCGTAATTCTTTGTTTCAATCGAACTTAAGAGGGATGGAAACCTTTTTCAAGAGATTAAGCAACTGCAGGAAGAAGTTCGTTTCAATCGAACTTAAGAGGGATGGAAACACCAGTCTGCGCTGCACGGAAAATCGATATAATCTTCGTTTCAATCGAACTTAAGAGGGATGGAAACAAATGTGATTGAAATAAGGGAGGCGTGAGCCTCCCTTGTTTCAATCGAACTTAAGAGGGATGGAAACACGATTCTGTAACTTGACAAGTTATAGATAAGGTATAGTTTCAATCGAACTTAAGAGGGATGGAAACCATAGCCCCTTGTCACTTATCGCCAATATTTTTTTAGTTTCAATCGAACTTAAGAGGGATGGAAACTATTGTCTGCAAGATATTACATGGCACAAGCTTGCCGTTTCAATCGAACTTAAGAGGGATGGAAACGCGTGCCTATGCTGTTGAAGCTCAGCCACGAATAGTGGTTTCAATCGAACTTAAGAGGGATGGAAACAATGGCATTTGCTCGGTTTCTCCTTCTCCGAATACCGTTTCAATCGAACTTAAGAGGGATGGAAACGATTTTCTTTGAGGACATTAATCATACCCCCTTGTAAGTTTCAATCGAACTTAAGAGGGATGGAAACCCTTGCCGGTGTAGAGAACCGCTTTTCGGTCTAAATGTTTCAATCGAACTTAAGAGGGATGGAAACCCGTGTTTGGTAGCTTGCCATATTGAAGCTCAAGGTGTTTCAATCGAACTTAAGAGGGATGGAAACTTGGCACAATGTAACACCTTACCGTTCCGCTGCGTTGTTTCAATCGAACTTAAGAGGGATGGAAACACCATTTCGTTTCCAACATTTTACTTTTTCTTAACAGTTTCAATCGAACTTAAGAGGGATGGAAACAATCGTGGCCGCATATGCACATGTCATTGAGGGAACAGTTTCAATCGAACTTAAGAGGGATGGAAACTGAACCTGATTTACTTTATGGTACTGATCGGCGTTAAGTTTCAATCGAACTTAAGAGGGATGGAAACTTGCGTGTTCTCTCGAATACATTTGCGCTATTACGATGTTTCAATCGAACTTAAGAGGGATGGAAACCTAGAACCTAATGTTGAAAGAGATGTGTGCTTCTGGGTTTCAATCGAACTTAAGAGGGATGGAAACCAAACCACCGGTGGCTTAAGTCCCCTTGCAACTAACGTTTCAATCGAACTTAAGAGGGATGGAAACGTTTCGAGCAGAAATATGTCTACCCGCTCCGCTACCCGTTTCAATCGAACTTAAGAGGGATGGAAACCAGTGATCCCAAGCGAGTAATCGTGACAACATGTTCAGTTTCAATCGAACTTAAGAGGGATGGAAACTTCTGCTCAAGCCACTTTTCTGTCGAAAGGTGGCGCGTTTCAATCGAACTTAAGAGGGATGGAAACACATTTGCAGAAATGCGATACGAAATAAGAGACGGAGTTTCAATCGAACTTAAGAGGGATGGAAACCAGACGGGGTGAAAAAGAGGAGGGGTTTAGATGTAGTTTCAATCGAACTTAAGAGGGATGGAAAA

>NC_015707|6|7|1714941-1717563|PILER-CR
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ATGTGCGTGAATTTCCACGCCACTTTACTGCCTCCTG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CGCTTGTTGGTATACAACAGACTCAAATGCTGGCATG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CGGTTATAGTGCGCCGGGCAGGTATACGGTATCGAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAGGTTGCCTACCGAAGTGTATGGACACATTGAATTGT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TGCTAAGTGCGCTTGAAAAAATTTATATGAATTTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CTCAAGAAGACACAACATTGTTTGTTGCAGCCTGCAC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACGCCTTTTTCAAATGTTTTCTTCTCATTCCTTGGC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ATGTGTGTAGTCGATCTTATTGTCCGAAAGCCACCTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CGACTATGATACGTACTTGTTCGTTTTGGCTAAAGAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CCGTTCCTTCATGATTACCTCTAAAAACTCCCACTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACTTTAACCTTCCTTTTACATTTCATTAACCCAAAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GATTTTTTTTGAGGACATTAATCATACCCCCTTGTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GGAGCATAAATACTGCTTTTTCGAGGTTGTACATTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TATACTTCTTCTTCAACGAAGTCGTAAGATCCTACA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GGCGACTTAGTAGCACAACTAGAATACTTAGATAGAG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TAGTTCAAAACGTGTTATTCCGGATCGTAATTCTTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CTTTTTCAAGAGATTAAGCAACTGCAGGAAGAAGTTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACCAGTCTGCGCTGCACGGAAAATCGATATAATCTTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	AAATGTGATTGAAATAAGGGAGGCGTGAGCCTCCCTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACGATTCTGTAACTTGACAAGTTATAGATAAGGTATA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CATAGCCCCTTGTCACTTATCGCCAATATTTTTTTA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TATTGTCTGCAAGATATTACATGGCACAAGCTTGCC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GCGTGCCTATGCTGTTGAAGCTCAGCCACGAATAGTG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	AATGGCATTTGCTCGGTTTCTCCTTCTCCGAATACC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GATTTTCTTTGAGGACATTAATCATACCCCCTTGTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CCTTGCCGGTGTAGAGAACCGCTTTTCGGTCTAAAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CCGTGTTTGGTAGCTTGCCATATTGAAGCTCAAGGT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TTGGCACAATGTAACACCTTACCGTTCCGCTGCGTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACCATTTCGTTTCCAACATTTTACTTTTTCTTAACA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	AATCGTGGCCGCATATGCACATGTCATTGAGGGAACA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TGAACCTGATTTACTTTATGGTACTGATCGGCGTTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TTGCGTGTTCTCTCGAATACATTTGCGCTATTACGAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CTAGAACCTAATGTTGAAAGAGATGTGTGCTTCTGG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAAACCACCGGTGGCTTAAGTCCCCTTGCAACTAAC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GTTTCGAGCAGAAATATGTCTACCCGCTCCGCTACCC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAGTGATCCCAAGCGAGTAATCGTGACAACATGTTCA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TTCTGCTCAAGCCACTTTTCTGTCGAAAGGTGGCGC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACATTTGCAGAAATGCGATACGAAATAAGAGACGGA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAGACGGGGTGAAAAAGAGGAGGGGTTTAGATGTA
GTTTCAATCGAACTTAAGAGGGATGGAAAA

>NC_015707|6|6|1714941-1717563|CRISPRCasFinder
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ATGTGCGTGAATTTCCACGCCACTTTACTGCCTCCTG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CGCTTGTTGGTATACAACAGACTCAAATGCTGGCATG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CGGTTATAGTGCGCCGGGCAGGTATACGGTATCGAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAGGTTGCCTACCGAAGTGTATGGACACATTGAATTGT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TGCTAAGTGCGCTTGAAAAAATTTATATGAATTTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CTCAAGAAGACACAACATTGTTTGTTGCAGCCTGCAC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACGCCTTTTTCAAATGTTTTCTTCTCATTCCTTGGC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ATGTGTGTAGTCGATCTTATTGTCCGAAAGCCACCTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CGACTATGATACGTACTTGTTCGTTTTGGCTAAAGAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CCGTTCCTTCATGATTACCTCTAAAAACTCCCACTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACTTTAACCTTCCTTTTACATTTCATTAACCCAAAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GATTTTTTTTGAGGACATTAATCATACCCCCTTGTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GGAGCATAAATACTGCTTTTTCGAGGTTGTACATTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TATACTTCTTCTTCAACGAAGTCGTAAGATCCTACA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GGCGACTTAGTAGCACAACTAGAATACTTAGATAGAG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TAGTTCAAAACGTGTTATTCCGGATCGTAATTCTTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CTTTTTCAAGAGATTAAGCAACTGCAGGAAGAAGTTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACCAGTCTGCGCTGCACGGAAAATCGATATAATCTTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	AAATGTGATTGAAATAAGGGAGGCGTGAGCCTCCCTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACGATTCTGTAACTTGACAAGTTATAGATAAGGTATA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CATAGCCCCTTGTCACTTATCGCCAATATTTTTTTA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TATTGTCTGCAAGATATTACATGGCACAAGCTTGCC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GCGTGCCTATGCTGTTGAAGCTCAGCCACGAATAGTG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	AATGGCATTTGCTCGGTTTCTCCTTCTCCGAATACC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GATTTTCTTTGAGGACATTAATCATACCCCCTTGTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CCTTGCCGGTGTAGAGAACCGCTTTTCGGTCTAAAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CCGTGTTTGGTAGCTTGCCATATTGAAGCTCAAGGT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TTGGCACAATGTAACACCTTACCGTTCCGCTGCGTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACCATTTCGTTTCCAACATTTTACTTTTTCTTAACA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	AATCGTGGCCGCATATGCACATGTCATTGAGGGAACA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TGAACCTGATTTACTTTATGGTACTGATCGGCGTTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TTGCGTGTTCTCTCGAATACATTTGCGCTATTACGAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CTAGAACCTAATGTTGAAAGAGATGTGTGCTTCTGG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAAACCACCGGTGGCTTAAGTCCCCTTGCAACTAAC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GTTTCGAGCAGAAATATGTCTACCCGCTCCGCTACCC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAGTGATCCCAAGCGAGTAATCGTGACAACATGTTCA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TTCTGCTCAAGCCACTTTTCTGTCGAAAGGTGGCGC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACATTTGCAGAAATGCGATACGAAATAAGAGACGGA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAGACGGGGTGAAAAAGAGGAGGGGTTTAGATGTA
GTTTCAATCGAACTTAAGAGGGATGGAAAA

>NC_015707|6|6|1714941-1717563|CRT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ATGTGCGTGAATTTCCACGCCACTTTACTGCCTCCTG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CGCTTGTTGGTATACAACAGACTCAAATGCTGGCATG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CGGTTATAGTGCGCCGGGCAGGTATACGGTATCGAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAGGTTGCCTACCGAAGTGTATGGACACATTGAATTGT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TGCTAAGTGCGCTTGAAAAAATTTATATGAATTTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CTCAAGAAGACACAACATTGTTTGTTGCAGCCTGCAC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACGCCTTTTTCAAATGTTTTCTTCTCATTCCTTGGC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ATGTGTGTAGTCGATCTTATTGTCCGAAAGCCACCTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CGACTATGATACGTACTTGTTCGTTTTGGCTAAAGAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CCGTTCCTTCATGATTACCTCTAAAAACTCCCACTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACTTTAACCTTCCTTTTACATTTCATTAACCCAAAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GATTTTTTTTGAGGACATTAATCATACCCCCTTGTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GGAGCATAAATACTGCTTTTTCGAGGTTGTACATTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TATACTTCTTCTTCAACGAAGTCGTAAGATCCTACA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GGCGACTTAGTAGCACAACTAGAATACTTAGATAGAG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TAGTTCAAAACGTGTTATTCCGGATCGTAATTCTTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CTTTTTCAAGAGATTAAGCAACTGCAGGAAGAAGTTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACCAGTCTGCGCTGCACGGAAAATCGATATAATCTTC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	AAATGTGATTGAAATAAGGGAGGCGTGAGCCTCCCTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACGATTCTGTAACTTGACAAGTTATAGATAAGGTATA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CATAGCCCCTTGTCACTTATCGCCAATATTTTTTTA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TATTGTCTGCAAGATATTACATGGCACAAGCTTGCC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GCGTGCCTATGCTGTTGAAGCTCAGCCACGAATAGTG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	AATGGCATTTGCTCGGTTTCTCCTTCTCCGAATACC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GATTTTCTTTGAGGACATTAATCATACCCCCTTGTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CCTTGCCGGTGTAGAGAACCGCTTTTCGGTCTAAAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CCGTGTTTGGTAGCTTGCCATATTGAAGCTCAAGGT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TTGGCACAATGTAACACCTTACCGTTCCGCTGCGTT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACCATTTCGTTTCCAACATTTTACTTTTTCTTAACA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	AATCGTGGCCGCATATGCACATGTCATTGAGGGAACA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TGAACCTGATTTACTTTATGGTACTGATCGGCGTTAA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TTGCGTGTTCTCTCGAATACATTTGCGCTATTACGAT
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CTAGAACCTAATGTTGAAAGAGATGTGTGCTTCTGG
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAAACCACCGGTGGCTTAAGTCCCCTTGCAACTAAC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	GTTTCGAGCAGAAATATGTCTACCCGCTCCGCTACCC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAGTGATCCCAAGCGAGTAATCGTGACAACATGTTCA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	TTCTGCTCAAGCCACTTTTCTGTCGAAAGGTGGCGC
GTTTCAATCGAACTTAAGAGGGATGGAAAC	ACATTTGCAGAAATGCGATACGAAATAAGAGACGGA
GTTTCAATCGAACTTAAGAGGGATGGAAAC	CAGACGGGGTGAAAAAGAGGAGGGGTTTAGATGTA
GTTTCAATCGAACTTAAGAGGGATGGAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015707.1|WP_013932948.1|1708934_1710662_+|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	gnl|CDD|187861
NC_015707.1|WP_013932957.1|1725119_1725926_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213224
NC_015707.1|WP_013932951.1|1712281_1714510_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_015707.1|WP_013932943.1|1705839_1706184_+|DUF86-domain-containing-protein	unknown	unknown	gnl|CDD|225236
NC_015707.1|WP_013932960.1|1728284_1730228_+|carbohydrate-binding-domain-containing-protein	unknown	unknown	gnl|CDD|185693
NC_015707.1|WP_083815735.1|1718096_1718639_-|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl|CDD|225853
NC_015707.1|WP_013932942.1|1705529_1705847_+|nucleotidyltransferase	unknown	unknown	gnl|CDD|224583
NC_015707.1|WP_041446695.1|1711598_1712297_+|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl|CDD|131641
NC_015707.1|WP_013932955.1|1723284_1724127_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|224094
NC_015707.1|WP_083815785.1|1710663_1711593_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl|CDD|274217
NC_015707.1|WP_013932944.1|1706221_1706968_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl|CDD|224499
NC_015707.1|WP_169310363.1|1717811_1718105_+|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932945.1|1707168_1707660_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_015707.1|WP_041446696.1|1719250_1720360_+|ROK-family-protein	unknown	unknown	gnl|CDD|224851
NC_015707.1|WP_041446449.1|1725925_1726123_+|hypothetical-protein	unknown	unknown	unknown
NC_015707.1|WP_013932946.1|1707671_1708652_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_015707.1|WP_013932947.1|1708654_1708915_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_015707.1|WP_013932954.1|1722262_1723279_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223674
NC_015707.1|WP_013932959.1|1726106_1728272_+|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl|CDD|224389
NC_015707.1|WP_013932956.1|1724130_1725123_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|223521

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015707.1|WP_013932948.1|1708934_1710662_+|TIGR02556-family-CRISPR-associated-protein	cas8b1	pfam09484_cas8b1_CAS-I-B	9.8e-103	339.5	13.8
NC_015707.1|WP_013932945.1|1707168_1707660_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	2.5e-43	142.7	0.2
NC_015707.1|WP_013932951.1|1712281_1714510_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	8.7e-63	207.4	14.5
NC_015707.1|WP_013932946.1|1707671_1708652_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	1.8e-136	449.2	12.7
NC_015707.1|WP_013932947.1|1708654_1708915_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	7e-29	94.6	1.3
NC_015707.1|WP_041446695.1|1711598_1712297_+|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	2.4e-44	146.4	0.0
NC_015707.1|WP_083815785.1|1710663_1711593_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	1.9e-99	327.3	0.1
NC_015707.1|WP_013932944.1|1706221_1706968_-|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	2.4e-60	199.1	3.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015707.1|WP_013932948.1|1708934_1710662_+|TIGR02556-family-CRISPR-associated-protein	gnl|CDD|187861	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as TM1802 family.	1.17367e-91
NC_015707.1|WP_013932951.1|1712281_1714510_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.11638e-50
NC_015707.1|WP_013932943.1|1705839_1706184_+|DUF86-domain-containing-protein	gnl|CDD|225236	COG2361, COG2361, Uncharacterized conserved protein [Function unknown].	3.79364e-38
NC_015707.1|WP_013932960.1|1728284_1730228_+|carbohydrate-binding-domain-containing-protein	gnl|CDD|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	1.3548e-109
NC_015707.1|WP_013932957.1|1725119_1725926_+|ABC-transporter-ATP-binding-protein	gnl|CDD|213224	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters. The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.	1.18828e-96
NC_015707.1|WP_013932942.1|1705529_1705847_+|nucleotidyltransferase	gnl|CDD|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	2.48991e-26
NC_015707.1|WP_041446695.1|1711598_1712297_+|type-I-B-CRISPR-associated-protein-Cas5	gnl|CDD|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	1.35885e-40
NC_015707.1|WP_013932955.1|1723284_1724127_+|ABC-transporter-permease	gnl|CDD|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.95824e-66
NC_015707.1|WP_083815785.1|1710663_1711593_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl|CDD|274217	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csh2 protein of the Hmari subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02589, the Csd3 protein of the Dvulg CRISPR subtype.	2.37755e-106
NC_015707.1|WP_013932944.1|1706221_1706968_-|CRISPR-associated-endoribonuclease-Cas6	gnl|CDD|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.68243e-53
NC_015707.1|WP_083815735.1|1718096_1718639_-|DDE-type-integrase/transposase/recombinase	gnl|CDD|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.2388e-07
NC_015707.1|WP_013932945.1|1707168_1707660_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.8128e-54
NC_015707.1|WP_041446696.1|1719250_1720360_+|ROK-family-protein	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	4.15422e-41
NC_015707.1|WP_013932946.1|1707671_1708652_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.47364e-163
NC_015707.1|WP_013932947.1|1708654_1708915_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.50911e-28
NC_015707.1|WP_013932954.1|1722262_1723279_+|ABC-transporter-permease	gnl|CDD|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.17499e-108
NC_015707.1|WP_013932959.1|1726106_1728272_+|glycoside-hydrolase-family-3-protein	gnl|CDD|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	3.84247e-89
NC_015707.1|WP_013932956.1|1724130_1725123_+|ABC-transporter-ATP-binding-protein	gnl|CDD|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.31995e-130

Protein sequences

>NC_015707.1|WP_013932951.1|1712281_1714510_+|CRISPR-associated-helicase/endonuclease-Cas3
MLDRLKSHEDRYLIDHLDSVTNLMLKKGKLINWEFFDLPWQKMEKILKVCGYCHDYAKATSYFQEYIEKRRKKGVETNHALLSAIVGFEASRKLGLDGKTSAFIYLVIKHHHDRLDNFGPFEIEHMQILQNQIKTISDEFKRWVEQKLGIELELSLENEIKKIKRLFLLNTVDERDYLFVHLLLSLLASADMEDAAFHGLAPSWPEGGLTGSLIDNYVSKIPRKTSIDELRQRFYKSTLEKLKKAAGNVFSVTAPTGVGKTLVNLRIAAELVGENGLIVYCLPFISIIDQTVKVIERLFSSEIDANILLPYHHLADPEYKEYEYDKPNEQQTRVLIEDWHSKIVVTTFVSLFESLFTNRKVPFLHKLSNAVIILDEVQAVPYKYWEPIKIMLSMLSKLGTKIILSTATQPGILDNCTELADRNLFKDLDRTKINFCGEIFIEDFAEKLSKLTKEKLIKGQKMLVICNTIRESQNLYLALREAIGSKDIYYLSASVIPKHRLERISKLKSLSKPVICISTQVVEAGVDLSFDYVIRDEGPMDSVVQAVGRCNRNFEKKLGIADIFTVKDERRALSKYIYDSINIDVTRRILEKNKTFSEQQFHGVVEEYFQEIKLISNQDKENLCEKLRNLMFDEIATSFRLIEDKGETVAVYIEYDDEAIQLRKEYNQIVEDNSLTKFEKLAKLSKKYKQMSSYIVDVRIDKRLVENALVVEHGLIVVPSDQLDLWYDKTTGFGRKDGIIEI
>NC_015707.1|WP_041446695.1|1711598_1712297_+|type-I-B-CRISPR-associated-protein-Cas5
MKILVFDVKGKFALFRRSYTTTSSTTYPFPPRTAICGIIAAILGIENPPDRPSWYLRKFDNARISIRLLNPIKKIRLGINYVETKPDKDTPRTQILAEIIKDPAYRIYISEFEKFDELVKLIRSHECVFTPYLGLSEFIADFSYVGVFEAKKVSLPTLVNSVVKIIDGTKSFPERGTALIRERMVLRMDDKRTPLEFAEYWVEKNGKALQILEYSEDILEIEELNERICWID
>NC_015707.1|WP_083815785.1|1710663_1711593_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MNEVIRNRSELLFLYDVKWANPNGDPLEENKPRIDEETERCIVSDVRLKRTIRDELMAMGETIWVSGEAVTPDERAKELEITSEEDATKKCIDVRLFGGVMPIKPKEKGAKGQSINLTGPVQFRFGMSLHPVKVVFMQGTAAFTSEAKAEQRSFREEYVIPYALICFYGVANENSAKKTNLTEQDMQKLLKAMWNGTKNLITRSKMEHNPRLLLRIIYKEGQNFHIGELDSYISFVAEKSPKELRDISDLQLDVTMLMDALGKNKDKIEKVQLIIDERLKMLKNNSPTCIVRELQELGIKFENIAQLMG
>NC_015707.1|WP_013932948.1|1708934_1710662_+|TIGR02556-family-CRISPR-associated-protein
MIDKLIRLSKIYPPKDLIENLSRPLTAKQGFAIKISRDAFEDVIVIDQTKKLLFYDQKGNVSGKSPTVKISGSNVDDFKKVVKKVAEFFNETALQNVYETIVGNLEAITEKAFQKYSESLGKDKPSFFTVIIDGKFPEDHPIVREIFVERVMEKSKSGIDGICATCGKKTKVTASANQVFKFITFDKPGFCPNLDKSQAVKVFPICENCLLLLENASNLIKNKLTFDFVGSNLWIIPSIVGDDPEILKAVTEKIASIGIGSVEITASKTLRDFSKLELSAEEILSEEGENVLYDFLLIKQSQSQQRIELHVSEVSPTRLRKLYECSKSISKLFEENGLDISMEKSSFKPGFEQLWYLFGKPAADEAGRKEYLNLVEACFTQNQFNYDRFLWYIMKKLRQTFHQFPENLKNDALSAFGNLLYLTAINVLRPTQGGAKMPQEEGIFDSFFDKFKEFFDEPWKKAVFLTGVLVKRVMEVQESRKGKSPFLKKLGGLKMNYNQIKYLLTESWKKLQQYDAFQSSDEILFSEASKYFLQASDVKASIDLLNFVLTLGMTFPRNLLLKNFERKVEGVSVNE
>NC_015707.1|WP_013932947.1|1708654_1708915_+|CRISPR-associated-endonuclease-Cas2
MYVIVCYDIEVERVAKALKICRKYLNWVQNSVFEGQITRGNLERLKHELSKIVKDSDSIRFYIFQSEDVFELEILGQDKCMNDLII
>NC_015707.1|WP_013932946.1|1707671_1708652_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MEPVYIFSSGFLRRKNETLVLETEQGSKYIPVENVSEIKIFGEVDINKRALEFLTEKSIVVHFFNYYGYYVGTFYPREHLNSGYVILKQAEFYLNPAKRLNLAKKFVFGAIKNAINVLKSRNENLESEIKKIQEHLSLIDKCDSIEQLMAIEGNVKEIYYSCFDKILQGSDFVFERRTRQPPENELNAMISFGNSLLYTSVLSEIYKTHLDPRIGYLHTTNNRRFTLNLDVAEIFKPVIVDRLIFALVNRKQIKKNDFEPIVNGLVLKEKARQTFIRAFEDRLKETVYHRSLKRNVSYRSLIRMEIYKIEKHLMEDEEYKPYIFEG
>NC_015707.1|WP_013932945.1|1707168_1707660_+|CRISPR-associated-protein-Cas4
MVTGSSLLSYTVCKRQAWLMQRNVEPDQANEYLVIGRLIHSESYKDKAIREITLPGMKIDLVWESGGLTIVGEIKKSSRYLKGAKLQLLFYLSELRKRGIKAVGKILIPKEKKQINVELTEENLKELYTAIEELEELSKIEKIPPKKRTSFCTKCGFEEFCWS
>NC_015707.1|WP_013932944.1|1706221_1706968_-|CRISPR-associated-endoribonuclease-Cas6
MLLRLKISFSAYPCSIPLNYNYHLAAFIYKRLKIADEALASILHESGYGGFKLFTFSQLFLTMYTVNKDVLILKEGCKGTWFVSSINDDFLKAFMSSLLQKPYLEICGENFEIVEIEVPTNIEFSSRMKFKMLSPMVLSIPVEFKGKLSHKYLVPSDPEYQNAFERNLKKKFMAIYGKESTGSVKIYPDWEYISSRSKITKLIQIKDTFIKACLFPFEVEGDVELIKIGYEAGFGEKNAMGFGMVECV
>NC_015707.1|WP_013932943.1|1705839_1706184_+|DUF86-domain-containing-protein
MSKRNVKLFVEDMLNAIEKIEKYCKGIGSYEEFSKQDIVVDAVLRNLEIIGEAASKIPENIRSRFSEIPWKRVVGLRNIIVHGYFVVDLQIVWRIITSQLPELRIALEKMRAEL
>NC_015707.1|WP_013932942.1|1705529_1705847_+|nucleotidyltransferase
MRATGKKSVKLEDIKRILAENKKRLQEKYGIKEIAIFGSFARGDETSKSDIDILLEFERPIGWEFVDLCEELENLLGLKVDVLTKNALMSKPALWESIRKDIVYV
>NC_015707.1|WP_169310363.1|1717811_1718105_+|hypothetical-protein
MWESLLKKRITKEMFVETFELKNREFDLEEDEKALDFVCGGLNSGKDIEFNFQTLCHLHFAGVPKDKDRKTLVTVLMKRKSKFGFKSMITKESDLST
>NC_015707.1|WP_083815735.1|1718096_1718639_-|DDE-type-integrase/transposase/recombinase
MRRKYELALRKAAAIIGVSHEALRKWWARMKEEIFAEKIEGNAVVAVDEMKVNINGYCWYVWIAFEVKRKKVIYALVSKTREKDKASLVMKMVKKRVTGKLRIITDKGPWYWEASEENMGYWEHEHERFGERSLVESVIGITRYRLRRFNRNKLWYKRRDEDIVKWLFPFLLLVQFSFLS
>NC_015707.1|WP_041446696.1|1719250_1720360_+|ROK-family-protein
MKSENKRMILRYLIENGSQSRMDIVRKTKLAQSAVWRITEELIEEGLLEISTRRKRATIVAPTKSFMTAVVFNVEVSETTVAMGFLNGSWKVVKRFSTPKVFEEFKEEVRSSLQEAIKIQQVVDGKLPKLVFSLPGMVNNEKAFLIHAPNIGWKHIDFRKEFEDLGMEILADNDSNLSLLAELFFSQDVKKSKTSFFLYLSEGVGGAISLNRNIARGENFAAGEIGHVIIDLNGSREVEEFLSISKLIERVEKLVQLKGKTPKEKFHHLLHLWLLGDHGVKKVVEEYLRHLAVVLRNIIYFLNPGVIILGGLVNNLWETFGFFVKTELQKITDEEIAKVIIRDTVFKEVSPSLVGGNVLAIESFLKSVN
>NC_015707.1|WP_013932954.1|1722262_1723279_+|ABC-transporter-permease
MSLKPMMKYLLRRFVFLLITYLVATTIVFILPRAIPGNPLAQLLGNLSRVAQANPEAVRAAERRLMEEFGLDKPWYVQYFEFIGKTLRGDLGTSIAFYPRKVVDLIIPVIPWTLALLLPATVVAWILGNSLGALAAFRRNSWIDKGVLTTSLIVSQIPYYWLGMIFIFFFGVRLGWLPVQGAYSQGTIPSLSWSFFVDVAKHYILPFLSIVVSAMGGWAIGMRLMVIYELGSDYAMFSEYLGMKDERIFKYVFRNSLLPQVTGLALSLGGILGGALITEIVFNYPGTGYLLFRALTTLDYSLIQGIFVILIASVYLANFVVDFLYALIDPRIRLGQEA
>NC_015707.1|WP_013932955.1|1723284_1724127_+|ABC-transporter-permease
MFLIMIKPLFKNKKFLVGISIFLFFLLLGILGPVFYKVDPMEMTWDWEKPPSSEHPLGTDTYGRDILAQLLHGIRASLYVGFLAAVISLSIGTVIGSLSAVKRGIVDDTLMAITNIVLTTPSILIAILIASYFRVRSIEMVAVILGLFQWPWYARAIRAQLMSLMARDYVNLSILAGYSDLRLAVEDLIPSIATYAFMSFVLFINGGIMGEAGLSLIGLGPTRGISLGIMLQWAVLMEAVRRGLWWWFVPPGVAIVAITASLLVISTAMDEVFNPRLREE
>NC_015707.1|WP_013932956.1|1724130_1725123_+|ABC-transporter-ATP-binding-protein
MKEVLLAVENVRAYYELEKICVKAVDGVSFEIFEDEVVGVVGESGCGKTTLSNVVFMNIVKPLKFVDGRVVLKANGKYEEISSMNREEVRKRFWGKEITIIPQSAMNALMPTIKMESYVKHLAQSHEIDVEELLDKAKKRFEEVGLKPMWLKRYPFELSGGMRQRAVIAIATILNPSLLIADEPTSALDVVNQKVFLKVLMQMKKQGIVKSIMFITHDIATVRQIADRMIIMYAGKIVEFSKMEDILKKPLHPYAQVLFNSVLTPEPEVKKRGITVIPGAPPNLINPPSGCRFHPRCPKVMEICKADEPPLREVEPGRKVACWLYMEEVV
>NC_015707.1|WP_013932957.1|1725119_1725926_+|ABC-transporter-ATP-binding-protein
MNRLVVKNLTKIFTLGFFSKRRIEAVKNVSFEVKAKEIVSLVGESGSGKTTTAKMILRLLPPTSGEIIFEGKDIWKDIKDRESVLWFRRKVHAVFQDPFSSYNPFYPVERTIWQAINLLEKKPSNKKEALELIKESLFRVGIDPNDVLGKYPHQISGGQKQRIMIARCWILKPLLIVADEPTSMIDASSRGGIIKLLEELREEQGTSIIFITHDLGLAYYVSDNIYVMKDGEIVERGHPDKIVLEPSHEYAKILVKSIPKLYEKMEDL
>NC_015707.1|WP_041446449.1|1725925_1726123_+|hypothetical-protein
MFTKALITLFAWALVLEVLVLLYYLWRGFRPVEFYLNIFLMIFTIPILVFLIFREKRRRKDEGGE
>NC_015707.1|WP_013932959.1|1726106_1728272_+|glycoside-hydrolase-family-3-protein
MKEVNEILSKLTLEEKVKLVVGVGMPGFFGNPPSKVHGAAGETHPIPRLGMPAAVLADGPAGLRINPTRENDEKTYHATAFPVETMLASTWNKELLEKVGQAVGEEVREYGVDILLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMAAAFVKGVQSQGVGACVKHFVANEQETNRMQVDTIVSERALREIYLKAFEIAIKKAKPWTVMSAYNKLNGKYCSQNAWLLKKVLREDWGFEGFVMSDWYAGDNPVEQIKAGNDLIMPGKTYQVNFQRKDEIEEIMQALKEGKLSEDELNECVRNILNVLLKTPSFRKYSYSNKPDLDAHAKIAYEAGAEGVVLLKNNDVLPFDKTTPFALFGTGQIETIKGGTGSGDTHPRYIVSILDGIKEAGLKVDEQLMKRYEDYIAKMRETEQYKPRAGLWGTIEKPKLPENFLSEDEIKVIAERNDVGIIVISRISGEGYDRKPIKGDFYLSDDEFELIQKVSSQFHKLEKKVLVILNIGSPIEIASWRDMVDGILLIWQAGQETGRIVADTLVGKINPSGKLPTTFPKDYKDIPSWNFPGEPVDNPQKVVYEEDIYVGYRYYDTFNVEPAYEFGFGLSYTKFEYKDLNVSLDGDLVKISYVVTNVGKYPGKEISQVYVKAPKGKINKPFQELKAFHKTRLLNPGESETINLEIPLRELASFVKDEWFVEKGEYEIRIGASSRDIRLRKIFSIEKERTFKP
>NC_015707.1|WP_013932960.1|1728284_1730228_+|carbohydrate-binding-domain-containing-protein
MKRAWRVFFLICFLMITSYGLSEPANMLFNGSFDQTIFIAGLNIEPPAPDGSIDTKQNWVFFTNSGGEGKAYVQDGVLVVEITNGGNHTWSVQILQSPISVEKFHRYKVSFTAKASSKRKIGVKIGGTAGRGWVAYNPGTDESGGIVFELGTDWKTYEFEFVMRQESDTNARFEFQLGKAVGVVWIDNVFMEMIGVVERKEKQKIYTEEDEDKVEDWQLVWSQEFDDETIDTSLWNFEIGNGHAKGIPGWGNAELQYYTDRNAFIEQGCLVIEARKERASDEYGTYDYTSARMTTEGKFEIKYGRIEIRAKLPKGKGIWPALWMLGSNIGQVGWPRCGEIDIMEMLGHDTRTVYGTVHGPGYSGGASIGVAYKLPESVADFSEDFHVFAIEWDEDEIEWYVDDQLYHVLSKDEIEELGLEWVFDQPFFLIMNVAVGGYWPGYPDETTVFPQRMYIDYIRVFEDKNPEKVVGEVNDCEYELIIKKAGPKVTFEEINNGSFDEPIVNDQANQPDEWFIWQAGTYGISGAKVSNYGTKDGYAYINLANTGTETWHIQFNQWIGLYRGKTYLISFKAKSDTPRTINVKILQNHDPWINYFVQTVNLTKEWQTFTFTYTHPETADEIVQISFELGTGPVTTVYFDDISISSK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015707_4	4.12|1176875|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1176875-1176910	36	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	547400-547435	9	0.75
NC_015707_5	5.8|1183239|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1183239-1183273	35	MH375074	Enterococcus phage LY0323, complete genome	29905-29939	9	0.743
NC_015707_5	5.8|1183239|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1183239-1183273	35	MK721190	Enterococcus phage vB_EfaS_Ef6.4, complete genome	10785-10819	9	0.743
NC_015707_5	5.8|1183239|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1183239-1183273	35	KF728385	Enterococcus phage IME_EF3, complete genome	11178-11212	9	0.743
NC_015707_5	5.8|1183239|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1183239-1183273	35	MK721187	Enterococcus phage vB_EfaS_Ef6.1, complete genome	10564-10598	9	0.743
NC_015707_1	1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1138340-1138376	37	AP013582	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S24-C232, *** SEQUENCING IN PROGRESS ***	1621-1657	10	0.73
NC_015707_1	1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1138340-1138376	37	AP013592	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S41-C163, *** SEQUENCING IN PROGRESS ***	5482-5518	10	0.73
NC_015707_1	1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1138340-1138376	37	AP013589	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S34-C223, *** SEQUENCING IN PROGRESS ***	4298-4334	10	0.73
NC_015707_1	1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1138340-1138376	37	AP013587	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S30-C206, *** SEQUENCING IN PROGRESS ***	5710-5746	10	0.73
NC_015707_1	1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1138340-1138376	37	AP013590	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S35-C247, *** SEQUENCING IN PROGRESS ***	4092-4128	10	0.73
NC_015707_1	1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1138340-1138376	37	AP013585	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S26-C235, *** SEQUENCING IN PROGRESS ***	5472-5508	10	0.73
NC_015707_4	4.22|1177541|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT	1177541-1177575	35	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1777745-1777779	10	0.714
NC_015707_3	3.16|1166796|37|NC_015707|CRISPRCasFinder,CRT	1166796-1166832	37	NZ_CP039909	Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence	290369-290405	12	0.676

1. spacer 4.12|1176875|36|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 9, identity: 0.75

tttgattcggtaacttttattttttgctttataaag	CRISPR spacer
ttacgttcggtaaattttattttttcctttacgcat	Protospacer
**  .******** *********** *****.. * 

2. spacer 5.8|1183239|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to MH375074 (Enterococcus phage LY0323, complete genome) position: , mismatch: 9, identity: 0.743

ttttttagcataaacatcactt--tctaataaagaaa	CRISPR spacer
ttttttagcataaacaacacttgctttagctaggt--	Protospacer
**************** *****  *.**.. *.*   

3. spacer 5.8|1183239|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to MK721190 (Enterococcus phage vB_EfaS_Ef6.4, complete genome) position: , mismatch: 9, identity: 0.743

ttttttagcataaacatcactt--tctaataaagaaa	CRISPR spacer
ttttttagcataaacaacacttgctttagctaggt--	Protospacer
**************** *****  *.**.. *.*   

4. spacer 5.8|1183239|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to KF728385 (Enterococcus phage IME_EF3, complete genome) position: , mismatch: 9, identity: 0.743

ttttttagcataaacatcactt--tctaataaagaaa	CRISPR spacer
ttttttagcataaacaacacttgctttagctaggt--	Protospacer
**************** *****  *.**.. *.*   

5. spacer 5.8|1183239|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to MK721187 (Enterococcus phage vB_EfaS_Ef6.1, complete genome) position: , mismatch: 9, identity: 0.743

ttttttagcataaacatcactt--tctaataaagaaa	CRISPR spacer
ttttttagcataaacaacacttgctttagctaggt--	Protospacer
**************** *****  *.**.. *.*   

6. spacer 1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to AP013582 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S24-C232, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.73

----cgcttcacagcttcattttccatctttaacttcttca	CRISPR spacer
actaaatttaa----ttaattttccatctataacttcttca	Protospacer
     ..** *    ** *********** ***********

7. spacer 1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to AP013592 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S41-C163, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.73

----cgcttcacagcttcattttccatctttaacttcttca	CRISPR spacer
actaaatttaa----ttaattttccatctataacttcttca	Protospacer
     ..** *    ** *********** ***********

8. spacer 1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to AP013589 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S34-C223, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.73

----cgcttcacagcttcattttccatctttaacttcttca	CRISPR spacer
actaaatttaa----ttaattttccatctataacttcttca	Protospacer
     ..** *    ** *********** ***********

9. spacer 1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to AP013587 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S30-C206, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.73

----cgcttcacagcttcattttccatctttaacttcttca	CRISPR spacer
actaaatttaa----ttaattttccatctataacttcttca	Protospacer
     ..** *    ** *********** ***********

10. spacer 1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to AP013590 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S35-C247, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.73

----cgcttcacagcttcattttccatctttaacttcttca	CRISPR spacer
actaaatttaa----ttaattttccatctataacttcttca	Protospacer
     ..** *    ** *********** ***********

11. spacer 1.27|1138340|37|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to AP013585 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S26-C235, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.73

----cgcttcacagcttcattttccatctttaacttcttca	CRISPR spacer
actaaatttaa----ttaattttccatctataacttcttca	Protospacer
     ..** *    ** *********** ***********

12. spacer 4.22|1177541|35|NC_015707|PILER-CR,CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 10, identity: 0.714

tttggttttagcgggcgctgcgaaggcgggcgagc	CRISPR spacer
ggcgcgcgaagcgggcgcagcgaaggcggtcgagc	Protospacer
  .*  .  ********* ********** *****

13. spacer 3.16|1166796|37|NC_015707|CRISPRCasFinder,CRT matches to NZ_CP039909 (Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence) position: , mismatch: 12, identity: 0.676

gttgctttgcagggcagacatatgtctgcccattcct	CRISPR spacer
gacctgttgcagggcagacagttgtctgcccaggtga	Protospacer
* . . **************  **********  .