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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_015634 Bacillus coagulans 2-6, complete sequence 7 crisprs cas14j,cas8c,csa3,cas3,DEDDh,RT,DinG,cas2,cas1,cas4,cas5,cas7b,cas8b1,PrimPol 0 14 6 0

Results visualization

1. NC_015634
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015634_1 1070861-1070954 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015634_2 1750631-1750719 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015634_3 2072285-2072442 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015634_4 2119982-2120082 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015634_5 2497017-2497370 TypeI-B NA
5 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015634_6 2499794-2503038 TypeI-B II-B
49 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015634_7 2834622-2834729 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57355-57409 5 0.909
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64784-64838 6 0.891
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NZ_CP015439 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence 255881-255935 7 0.873
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 832-886 8 0.855
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75819-75873 8 0.855
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10428-10482 8 0.855
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70775-70829 8 0.855
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1329-1383 8 0.855
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1971-2025 8 0.855
NC_015634_5 5.2|2497115|34|NC_015634|PILER-CR 2497115-2497148 34 MN694285 Marine virus AFVG_250M134, complete genome 3028-3061 8 0.765
NC_015634_6 6.4|2500019|35|NC_015634|CRISPRCasFinder,CRT,PILER-CR 2500019-2500053 35 MN693125 Marine virus AFVG_25M7, complete genome 41004-41038 8 0.771
NC_015634_6 6.4|2500019|35|NC_015634|CRISPRCasFinder,CRT,PILER-CR 2500019-2500053 35 MN693570 Marine virus AFVG_25M8, complete genome 14080-14114 8 0.771
NC_015634_6 6.30|2501732|34|NC_015634|CRISPRCasFinder,CRT 2501732-2501765 34 MN693401 Marine virus AFVG_25M126, complete genome 7819-7852 8 0.765
NC_015634_6 6.67|2501734|34|NC_015634|PILER-CR 2501734-2501767 34 MN693401 Marine virus AFVG_25M126, complete genome 7819-7852 8 0.765
NC_015634_6 6.4|2500019|35|NC_015634|CRISPRCasFinder,CRT,PILER-CR 2500019-2500053 35 NZ_CP043858 Arcobacter cibarius strain H743 plasmid pACIB, complete sequence 171922-171956 9 0.743
NC_015634_6 6.44|2502646|34|NC_015634|CRISPRCasFinder,CRT 2502646-2502679 34 AP012341 Staphylococcus phage phi7401PVL DNA, complete genome 942-975 9 0.735
NC_015634_6 6.44|2502646|34|NC_015634|CRISPRCasFinder,CRT 2502646-2502679 34 NC_009761 Staphylococcus phage tp310-1, complete sequence 79-112 9 0.735
NC_015634_6 6.44|2502646|34|NC_015634|CRISPRCasFinder,CRT 2502646-2502679 34 LC541428 Staphylococcus phage vB_SauS_JS02 DNA, complete genome 420-453 9 0.735
NC_015634_6 6.81|2502648|34|NC_015634|PILER-CR 2502648-2502681 34 AP012341 Staphylococcus phage phi7401PVL DNA, complete genome 942-975 9 0.735
NC_015634_6 6.81|2502648|34|NC_015634|PILER-CR 2502648-2502681 34 NC_009761 Staphylococcus phage tp310-1, complete sequence 79-112 9 0.735
NC_015634_6 6.81|2502648|34|NC_015634|PILER-CR 2502648-2502681 34 LC541428 Staphylococcus phage vB_SauS_JS02 DNA, complete genome 420-453 9 0.735
NC_015634_4 4.1|2120005|55|NC_015634|CRISPRCasFinder 2120005-2120059 55 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483785-483839 10 0.818
NC_015634_5 5.4|2497247|34|NC_015634|PILER-CR 2497247-2497280 34 MN908694 Microbacterium phage RubyRalph, complete genome 3916-3949 10 0.706
NC_015634_6 6.29|2501667|35|NC_015634|CRISPRCasFinder,CRT 2501667-2501701 35 MT774411 CrAssphage cr273_1, complete genome 74595-74629 10 0.714
NC_015634_6 6.31|2501796|36|NC_015634|CRISPRCasFinder,CRT 2501796-2501831 36 MG198570 Lake Baikal phage Baikal-20-5m-C28, complete genome 9472-9507 10 0.722
NC_015634_6 6.39|2502320|36|NC_015634|CRISPRCasFinder,CRT 2502320-2502355 36 MG198570 Lake Baikal phage Baikal-20-5m-C28, complete genome 9472-9507 10 0.722
NC_015634_6 6.66|2501669|35|NC_015634|PILER-CR 2501669-2501703 35 MT774411 CrAssphage cr273_1, complete genome 74595-74629 10 0.714
NC_015634_6 6.68|2501798|36|NC_015634|PILER-CR 2501798-2501833 36 MG198570 Lake Baikal phage Baikal-20-5m-C28, complete genome 9472-9507 10 0.722
NC_015634_6 6.76|2502322|36|NC_015634|PILER-CR 2502322-2502357 36 MG198570 Lake Baikal phage Baikal-20-5m-C28, complete genome 9472-9507 10 0.722

1. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.909

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacaacagcttggaaggctgtagttttaccactaaactacacccgcatagtaag	Protospacer
**********************.************************** . *.*

2. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 6, identity: 0.891

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcataataat	Protospacer
***** *************** *************************** * *. 

3. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 7, identity: 0.873

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatattata	Protospacer
***** *************** ***************************   * .

4. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

5. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

6. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

7. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

8. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
cgacatcagcttggaaggctgaggttttaccactaaactacacccgcatatttta	Protospacer
***** *************** ***************************     .

9. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 8, identity: 0.855

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
catcatcagcttggaaggctgaggttttaccactaaactacacccgcattttagt	Protospacer
*. ** *************** ***************************.  ** 

10. spacer 5.2|2497115|34|NC_015634|PILER-CR matches to MN694285 (Marine virus AFVG_250M134, complete genome) position: , mismatch: 8, identity: 0.765

attttttgcgcagccagctgtgcttctttctttt	CRISPR spacer
aagtcaatcgcagccgtctgtgcttctttctttt	Protospacer
*  *.   *******. *****************

11. spacer 6.4|2500019|35|NC_015634|CRISPRCasFinder,CRT,PILER-CR matches to MN693125 (Marine virus AFVG_25M7, complete genome) position: , mismatch: 8, identity: 0.771

cttttattataacaataaaagtaacttttttcaaa	CRISPR spacer
attaaattataaaaataaaaataactttttgtcaa	Protospacer
 **  ******* *******.********* . **

12. spacer 6.4|2500019|35|NC_015634|CRISPRCasFinder,CRT,PILER-CR matches to MN693570 (Marine virus AFVG_25M8, complete genome) position: , mismatch: 8, identity: 0.771

cttttattataacaataaaagtaacttttttcaaa	CRISPR spacer
attaaattataaaaataaaaataactttttgtcaa	Protospacer
 **  ******* *******.********* . **

13. spacer 6.30|2501732|34|NC_015634|CRISPRCasFinder,CRT matches to MN693401 (Marine virus AFVG_25M126, complete genome) position: , mismatch: 8, identity: 0.765

cagacgacg-cttacgattgggaccagatgcttat	CRISPR spacer
-gggctatgtcttacgtttgggaccagatgcctac	Protospacer
 .*.* *.* ****** **************.**.

14. spacer 6.67|2501734|34|NC_015634|PILER-CR matches to MN693401 (Marine virus AFVG_25M126, complete genome) position: , mismatch: 8, identity: 0.765

cagacgacg-cttacgattgggaccagatgcttat	CRISPR spacer
-gggctatgtcttacgtttgggaccagatgcctac	Protospacer
 .*.* *.* ****** **************.**.

15. spacer 6.4|2500019|35|NC_015634|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043858 (Arcobacter cibarius strain H743 plasmid pACIB, complete sequence) position: , mismatch: 9, identity: 0.743

cttttattataacaataaaagtaacttttttcaaa	CRISPR spacer
aaccgtctataacaatagaagtaacttttttaaaa	Protospacer
  ..  .**********.************* ***

16. spacer 6.44|2502646|34|NC_015634|CRISPRCasFinder,CRT matches to AP012341 (Staphylococcus phage phi7401PVL DNA, complete genome) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*  

17. spacer 6.44|2502646|34|NC_015634|CRISPRCasFinder,CRT matches to NC_009761 (Staphylococcus phage tp310-1, complete sequence) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*  

18. spacer 6.44|2502646|34|NC_015634|CRISPRCasFinder,CRT matches to LC541428 (Staphylococcus phage vB_SauS_JS02 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*  

19. spacer 6.81|2502648|34|NC_015634|PILER-CR matches to AP012341 (Staphylococcus phage phi7401PVL DNA, complete genome) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*  

20. spacer 6.81|2502648|34|NC_015634|PILER-CR matches to NC_009761 (Staphylococcus phage tp310-1, complete sequence) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*  

21. spacer 6.81|2502648|34|NC_015634|PILER-CR matches to LC541428 (Staphylococcus phage vB_SauS_JS02 DNA, complete genome) position: , mismatch: 9, identity: 0.735

gatataaacttggtgaaaaagcaaaggtatattg	CRISPR spacer
aatataaattttgtgaaaaagcaaaatgatgtat	Protospacer
.*******.** *************.  **.*  

22. spacer 4.1|2120005|55|NC_015634|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.818

cgacaacagcttggaaggctgtggttttaccactaaactacacccgcatcaaagg	CRISPR spacer
catcatcagcttggaaggctgaggttttaccactaaactacacccgcatggttaa	Protospacer
*. ** *************** *************************** .  ..

23. spacer 5.4|2497247|34|NC_015634|PILER-CR matches to MN908694 (Microbacterium phage RubyRalph, complete genome) position: , mismatch: 10, identity: 0.706

gcgaactcccacgtttcatccctcatttcattat	CRISPR spacer
gcgaacgcccacgcttcatccctccgcgtatcgg	Protospacer
****** ******.**********  . .**.. 

24. spacer 6.29|2501667|35|NC_015634|CRISPRCasFinder,CRT matches to MT774411 (CrAssphage cr273_1, complete genome) position: , mismatch: 10, identity: 0.714

tggagagacattgatgaggcagaaggtgttgtcct	CRISPR spacer
ttagatgacattgatgaagaagaaggtgttgccag	Protospacer
* ... ***********.* ***********.*  

25. spacer 6.31|2501796|36|NC_015634|CRISPRCasFinder,CRT matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 10, identity: 0.722

gctggaggaagggaaggaacagaaaaagcttataaa	CRISPR spacer
gaacatatgagagaagcaacagaaaaagcttataaa	Protospacer
*   . . .**.**** *******************

26. spacer 6.39|2502320|36|NC_015634|CRISPRCasFinder,CRT matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 10, identity: 0.722

gctggaggaagggaaggaacagaaaaagcttataaa	CRISPR spacer
gaacatatgagagaagcaacagaaaaagcttataaa	Protospacer
*   . . .**.**** *******************

27. spacer 6.66|2501669|35|NC_015634|PILER-CR matches to MT774411 (CrAssphage cr273_1, complete genome) position: , mismatch: 10, identity: 0.714

tggagagacattgatgaggcagaaggtgttgtcct	CRISPR spacer
ttagatgacattgatgaagaagaaggtgttgccag	Protospacer
* ... ***********.* ***********.*  

28. spacer 6.68|2501798|36|NC_015634|PILER-CR matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 10, identity: 0.722

gctggaggaagggaaggaacagaaaaagcttataaa	CRISPR spacer
gaacatatgagagaagcaacagaaaaagcttataaa	Protospacer
*   . . .**.**** *******************

29. spacer 6.76|2502322|36|NC_015634|PILER-CR matches to MG198570 (Lake Baikal phage Baikal-20-5m-C28, complete genome) position: , mismatch: 10, identity: 0.722

gctggaggaagggaaggaacagaaaaagcttataaa	CRISPR spacer
gaacatatgagagaagcaacagaaaaagcttataaa	Protospacer
*   . . .**.**** *******************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1864344 : 1925132 57 Moraxella_phage(22.22%) tRNA,protease,coat,transposase NA
DBSCAN-SWA_2 2549902 : 2568419 12 Streptococcus_phage(66.67%) transposase NA
DBSCAN-SWA_3 2740223 : 2748539 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 2776802 : 2837211 56 Bacillus_virus(17.65%) tRNA,protease,transposase NA
DBSCAN-SWA_5 2939446 : 3003520 57 Bacillus_phage(16.67%) transposase,tRNA,bacteriocin,coat,holin NA
DBSCAN-SWA_6 3054138 : 3062208 10 Staphylococcus_phage(66.67%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage