CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	0 crisprs	RT,WYL,DEDDh	0	6
NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	0 crisprs	csa3,RT	0	1
NC_017325	Sinorhizobium meliloti SM11, complete sequence	4 crisprs	csa3,WYL,cas3,RT,DEDDh	2	9

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

88614 : 160408

uncultured_virus(22.22%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012477324.1\|88614_90123_-\|transposase	IS21-like element ISRm9 family transposase	NA	NA	NA	NA
WP_162145869.1\|90852_91323_+\|transposase	transposase	NA	NA	NA	NA
WP_017272622.1\|93250_94846_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_014530949.1\|96047_96482_-	helix-turn-helix transcriptional regulator	Q8W6G2	Sinorhizobium_phage	2.7e-24	47.4
WP_014530951.1\|96823_97243_-	helix-turn-helix transcriptional regulator	A0A1V0EEW3	Caulobacter_phage	8.9e-09	39.5
WP_017275891.1\|97535_97784_-	hypothetical protein	NA	NA	NA	NA
WP_014530953.1\|98033_98252_-	hypothetical protein	NA	NA	NA	NA
WP_041862553.1\|99439_101050_+	tyrosinase family protein	NA	NA	NA	NA
WP_014530957.1\|101172_101505_+	hypothetical protein	NA	NA	NA	NA
WP_017266263.1\|103159_103594_+\|transposase	transposase	NA	NA	NA	NA
WP_127616802.1\|103676_104435_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.3e-21	43.0
WP_017266261.1\|105101_105830_-	hypothetical protein	NA	NA	NA	NA
WP_014530965.1\|105989_106766_-	hypothetical protein	NA	NA	NA	NA
WP_014530968.1\|107828_108062_+	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA
WP_014530968.1\|108370_108604_+	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA
WP_017266275.1\|108743_109865_+	YcaO-like family protein	NA	NA	NA	NA
WP_014530970.1\|109864_111235_+	hypothetical protein	NA	NA	NA	NA
WP_014530971.1\|111231_112449_+	YcaO-like family protein	NA	NA	NA	NA
WP_014530972.1\|112508_113471_+	hypothetical protein	NA	NA	NA	NA
WP_017266279.1\|113778_114327_+	hypothetical protein	NA	NA	NA	NA
WP_014530974.1\|114343_114643_+	MoaD/ThiS family protein	NA	NA	NA	NA
WP_014530975.1\|114647_115790_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_017274615.1\|115810_116431_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_017266283.1\|116496_116790_-	hypothetical protein	NA	NA	NA	NA
WP_014530979.1\|117431_120353_-	type 2 lantipeptide synthetase LanM family protein	NA	NA	NA	NA
WP_017266285.1\|120469_121645_+	C1 family peptidase	NA	NA	NA	NA
WP_080567551.1\|123072_123549_+	thermonuclease family protein	NA	NA	NA	NA
WP_014530987.1\|125562_127200_-	chaperonin GroEL	A0A219YK78	uncultured_virus	1.9e-176	63.1
WP_014530988.1\|127275_127572_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	3.2e-21	57.6
WP_013845245.1\|128841_129099_-	acyl carrier protein	NA	NA	NA	NA
WP_013845247.1\|130216_130396_-	hypothetical protein	NA	NA	NA	NA
WP_014530994.1\|131166_131790_+	hypothetical protein	F1C5D5	Cronobacter_phage	1.1e-52	51.5
WP_017277577.1\|131790_132036_-	hypothetical protein	NA	NA	NA	NA
WP_014531000.1\|133982_135185_+	cytochrome P450	NA	NA	NA	NA
WP_013845251.1\|136550_138500_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_014528052.1\|138527_138920_+	hypothetical protein	NA	NA	NA	NA
WP_014531003.1\|138983_140594_+	tyrosinase family protein	NA	NA	NA	NA
WP_013845254.1\|140722_141052_+	hypothetical protein	NA	NA	NA	NA
WP_003532601.1\|142268_143234_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
WP_014531006.1\|143313_143604_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.4e-08	53.3
WP_003532599.1\|144259_145027_+	response regulator transcription factor	NA	NA	NA	NA
WP_003532595.1\|146204_146981_+	hypothetical protein	NA	NA	NA	NA
WP_013845255.1\|147144_147873_+	hypothetical protein	NA	NA	NA	NA
WP_014528047.1\|147933_148455_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_013845257.1\|148583_149174_+	NYN domain-containing protein	NA	NA	NA	NA
WP_017265677.1\|150288_152094_+	EAL domain-containing protein	G3MA91	Bacillus_virus	7.0e-18	33.9
WP_026029944.1\|153600_153843_-	hypothetical protein	NA	NA	NA	NA
WP_013845262.1\|155490_156510_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_003532569.1\|156653_157130_+	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA
WP_017266461.1\|157305_157647_-	thiazole synthase	NA	NA	NA	NA
WP_013845264.1\|157799_158918_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_086017831.1\|159305_160408_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.7e-11	29.0

DBSCAN-SWA_2

167135 : 173686

Sinorhizobium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014531028.1\|167135_167459_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.8e-18	47.5
WP_003532546.1\|167588_167741_-	hypothetical protein	A0A076GD42	Sinorhizobium_phage	1.3e-07	60.5
WP_014531029.1\|168803_169025_-	hypothetical protein	NA	NA	NA	NA
WP_026029965.1\|169904_170156_+	hypothetical protein	A0A291AUV5	Sinorhizobium_phage	3.8e-31	80.7
WP_013845271.1\|170276_170516_+	hypothetical protein	J7F8X5	Agrobacterium_phage	8.6e-17	61.8
WP_014528036.1\|170905_171427_-	hypothetical protein	NA	NA	NA	NA
WP_014528033.1\|172402_172606_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	8.0e-08	51.7
WP_017267115.1\|173092_173686_+	NUDIX hydrolase	A0A2H4IB87	Erwinia_phage	1.9e-09	35.3

DBSCAN-SWA_3

896131 : 924362

Acidithiobacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010967204.1\|896131_897334_-\|transposase	IS256-like element ISRm3 family transposase	A0A218MNI5	uncultured_virus	1.0e-41	43.3
WP_014531565.1\|897524_898199_+	iron-sulfur cluster repair di-iron protein	NA	NA	NA	NA
WP_014531566.1\|898214_899423_+	NnrS family protein	NA	NA	NA	NA
WP_010967629.1\|899445_899739_+	hypothetical protein	NA	NA	NA	NA
WP_014531567.1\|899817_901029_-	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_014528623.1\|901695_902565_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
WP_013845420.1\|902681_903605_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014531570.1\|904584_905460_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013845417.1\|906177_906447_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_014531572.1\|906443_906863_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_014531574.1\|907016_907430_-	hypothetical protein	NA	NA	NA	NA
WP_017266244.1\|907699_908011_+	type II toxin-antitoxin system HigB family toxin	F5A3A2	Riemerella_phage	1.3e-12	36.9
WP_003526626.1\|908028_908409_+	transcriptional regulator	A0A222YXG1	Escherichia_phage	2.9e-19	41.7
WP_014531093.1\|908668_909670_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.1e-44	34.8
WP_014531577.1\|909795_911169_+\|transposase	ISNCY family transposase	Q4VFZ2	Porcine_endogenous_retrovirus	7.9e-06	27.7
WP_014531578.1\|911528_912956_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_017265570.1\|913482_914130_-	autoinducer binding domain-containing protein	NA	NA	NA	NA
WP_014531024.1\|917028_918558_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.7e-119	43.9
WP_012477343.1\|918570_919308_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-57	47.5
WP_014531585.1\|919712_920333_-	autoinducer synthase	NA	NA	NA	NA
WP_014531586.1\|920506_920830_+	hypothetical protein	NA	NA	NA	NA
WP_014529334.1\|922044_922857_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.0e-28	35.7
WP_012477324.1\|922853_924362_-\|transposase	IS21-like element ISRm9 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1037616 : 1101213

Bacillus_virus(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_186808768.1\|1037616_1038559_+\|transposase	IS630 family transposase	A0A2P0VP61	Tetraselmis_virus	4.9e-15	27.2
WP_010967428.1\|1038928_1039567_-	hypothetical protein	NA	NA	NA	NA
WP_014531690.1\|1039811_1040267_-\|transposase	transposase	NA	NA	NA	NA
WP_010967426.1\|1040626_1042099_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013845764.1\|1042180_1043260_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-30	39.3
WP_014528554.1\|1043256_1044057_-	ABC transporter permease	NA	NA	NA	NA
WP_014531691.1\|1044058_1044934_-	ABC transporter permease	NA	NA	NA	NA
WP_014531692.1\|1045026_1046037_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003536940.1\|1046074_1046401_-	NIPSNAP family protein	NA	NA	NA	NA
WP_010967420.1\|1046406_1047870_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_014531693.1\|1047875_1048916_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_015242446.1\|1048912_1049848_-	flavin reductase family protein	NA	NA	NA	NA
WP_014531695.1\|1049844_1050678_-	alpha/beta fold hydrolase	A0A1D8EVD1	Mycobacterium_phage	2.5e-07	37.4
WP_014531696.1\|1050696_1051299_-	amino acid synthesis family protein	NA	NA	NA	NA
WP_012477343.1\|1051609_1052347_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-57	47.5
WP_014531024.1\|1052359_1053889_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.7e-119	43.9
WP_014528546.1\|1054369_1055065_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014531698.1\|1056198_1057860_-	nodulation protein NoeB	NA	NA	NA	NA
WP_014531699.1\|1057866_1059297_-	nodulation protein NoeA	NA	NA	NA	NA
WP_003534891.1\|1059274_1059490_-	hypothetical protein	NA	NA	NA	NA
WP_014531700.1\|1059686_1060238_-	nodulation acetyltransferase NodL	NA	NA	NA	NA
WP_014531703.1\|1061564_1062428_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA
WP_010967642.1\|1062431_1062584_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA
WP_014531704.1\|1062596_1063328_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA
WP_014531705.1\|1063339_1064959_-	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA
WP_014531707.1\|1065721_1066357_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_026030503.1\|1066436_1066784_-	hypothetical protein	NA	NA	NA	NA
WP_014531712.1\|1068578_1069271_-	flavin reductase family protein	NA	NA	NA	NA
WP_167389272.1\|1072727_1074095_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	9.6e-28	29.7
WP_014531721.1\|1075718_1076645_-	transcriptional regulator NodD2	NA	NA	NA	NA
WP_017267143.1\|1077001_1077154_+	hypothetical protein	NA	NA	NA	NA
WP_086017841.1\|1077755_1078974_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.9e-76	53.2
WP_014531728.1\|1081000_1082014_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-14	29.9
WP_014531729.1\|1082006_1083017_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.0e-14	28.9
WP_014531730.1\|1083013_1083967_-	ABC transporter permease	NA	NA	NA	NA
WP_017272050.1\|1083966_1084965_-	ABC transporter permease	NA	NA	NA	NA
WP_017272049.1\|1086781_1088206_-	C69 family dipeptidase	NA	NA	NA	NA
WP_014531735.1\|1088500_1089220_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020479503.1\|1089395_1090025_-	6-aminohexanoate-dimer hydrolase	NA	NA	NA	NA
WP_127616699.1\|1090104_1090494_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014531738.1\|1090734_1092018_-	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_014531740.1\|1092687_1092918_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA
WP_017274279.1\|1092935_1093349_-	hypothetical protein	NA	NA	NA	NA
WP_014531743.1\|1095236_1096643_+	hypothetical protein	NA	NA	NA	NA
WP_014531744.1\|1096717_1097893_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	5.6e-77	41.2
WP_013845338.1\|1098790_1099261_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_014531665.1\|1099638_1101213_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	8.3e-76	36.1

DBSCAN-SWA_5

1114882 : 1149670

Stx2-converting_phage(33.33%)

transposase,integrase

attL 1108046:1108105|attR 1127441:1129006

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1108046:1108105	attL	NA	NA	NA	NA
WP_020479558.1\|1114882_1115140_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_144005760.1\|1116233_1116569_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.3e-20	60.5
WP_014531761.1\|1116951_1118148_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_017275604.1\|1118155_1119037_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.7e-31	31.5
WP_014531764.1\|1120533_1121445_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_017275604.1\|1122556_1123438_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.7e-31	31.5
WP_014531761.1\|1123445_1124642_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_014531768.1\|1125135_1125510_-\|transposase	transposase	NA	NA	NA	NA
WP_003537652.1\|1125969_1127280_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_014531769.1\|1127308_1128001_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014531752.1\|1128007_1128961_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014531770.1\|1129079_1130573_+	M81 family metallopeptidase	NA	NA	NA	NA
1127441:1129006	attR	NA	NA	NA	NA
WP_003537613.1\|1130640_1131132_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014531772.1\|1132761_1133277_-	hypothetical protein	NA	NA	NA	NA
WP_014531773.1\|1133571_1134663_-	uridylate kinase	NA	NA	NA	NA
WP_014531774.1\|1134665_1135706_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_029728238.1\|1135929_1136217_-	hypothetical protein	NA	NA	NA	NA
WP_003537756.1\|1137543_1138773_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_014531777.1\|1138855_1139938_+	lysine-2,3-aminomutase-like protein	NA	NA	NA	NA
WP_014531779.1\|1141272_1141569_-	hypothetical protein	NA	NA	NA	NA
WP_017266853.1\|1142108_1142288_+	hypothetical protein	NA	NA	NA	NA
WP_014531100.1\|1142274_1144350_+	recombinase family protein	D2KRD2	Lactobacillus_phage	1.5e-08	22.7
WP_012477217.1\|1145841_1146189_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.7e-26	57.1
WP_012477218.1\|1146185_1146560_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_041862567.1\|1146704_1147943_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_014531784.1\|1148473_1149670_+\|transposase	IS256-like element ISRm5 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.5e-74	43.6

DBSCAN-SWA_6

1161270 : 1169597

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014531795.1\|1161270_1162149_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	5.6e-21	27.6
WP_014531797.1\|1162740_1163190_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	3.8e-18	48.3
WP_010967386.1\|1163559_1163721_-	hypothetical protein	NA	NA	NA	NA
WP_010968824.1\|1164275_1164572_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	8.4e-22	58.7
WP_013845862.1\|1164648_1166286_+	chaperonin GroEL	A0A219YK78	uncultured_virus	6.7e-177	63.3
WP_003535606.1\|1168473_1168677_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-07	51.7
WP_107592306.1\|1169228_1169597_-	DUF4055 domain-containing protein	A0A0A0RTF5	Escherichia_phage	5.0e-08	33.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017326

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

269712 : 278547

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010976194.1\|269712_270990_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-74	42.8
WP_014530159.1\|270993_271770_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_041862621.1\|271781_272687_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	5.1e-70	49.3
WP_014530161.1\|272829_273834_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	3.7e-13	26.5
WP_014530162.1\|273850_274528_+	aldolase	A0A077SK32	Escherichia_phage	1.5e-50	50.2
WP_014530163.1\|274827_275592_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_014530164.1\|275636_276620_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_014530165.1\|276621_277398_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.6e-06	28.6
WP_014530166.1\|277482_278547_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G3M9Y6	Bacillus_virus	4.5e-25	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_017325

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_017325_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017325_1

734795-734908

Orphan

Consensus_repeat	Method
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017325_1

>merge|NC_017325|1|734795-734908|CRISPRCasFinder
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAAGGGGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTCCGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAA

>NC_017325|1|1|734795-734908|CRISPRCasFinder
CGGAGAGGCAGGCCCGTACGGACTCCCGCCGGGAGAAA	GGGGGCGAAGGGCCGGTCTATCCGAACATGTGAATGTC
CGGAGAGGCAGGCCCGTACGGACTCCCGCCAGGAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017325.1\|WP_010968999.1\|733124_734789_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NC_017325.1\|WP_010969005.1\|741624_742644_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_017325.1\|WP_003527334.1\|736572_737460_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NC_017325.1\|WP_013844143.1\|721861_724189_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_017325.1\|WP_014529126.1\|738662_739064_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_017325.1\|WP_003527344.1\|730317_730494_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_003527321.1\|743724_745227_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NC_017325.1\|WP_003527345.1\|730124_730280_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_003527322.1\|742739_743696_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NC_017325.1\|WP_010968996.1\|727622_728561_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_017325.1\|WP_026029880.1\|718890_721851_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NC_017325.1\|WP_010969003.1\|739202_740129_+\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NC_017325.1\|WP_010969000.1\|735353_736352_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NC_017325.1\|WP_010968998.1\|731565_732855_-\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NC_017325.1\|WP_010969006.1\|745701_745875_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_013844144.1\|724542_727197_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NC_017325.1\|WP_003527320.1\|745306_745627_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|224656
NC_017325.1\|WP_010968997.1\|730632_731493_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NC_017325.1\|WP_003527346.1\|728570_729860_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NC_017325.1\|WP_010969004.1\|740144_741632_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720

Protein	Function_ID	Function_description	E-value
NC_017325.1\|WP_010968999.1\|733124_734789_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.40481e-104
NC_017325.1\|WP_010969005.1\|741624_742644_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.67535e-71
NC_017325.1\|WP_013844143.1\|721861_724189_-\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.74445e-54
NC_017325.1\|WP_014529126.1\|738662_739064_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.14068e-41
NC_017325.1\|WP_010969003.1\|739202_740129_+\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.46621e-74
NC_017325.1\|WP_003527321.1\|743724_745227_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NC_017325.1\|WP_010968998.1\|731565_732855_-\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NC_017325.1\|WP_003527322.1\|742739_743696_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.0146e-08
NC_017325.1\|WP_010968996.1\|727622_728561_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.33806e-16
NC_017325.1\|WP_026029880.1\|718890_721851_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NC_017325.1\|WP_010969000.1\|735353_736352_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.87733e-106
NC_017325.1\|WP_003527334.1\|736572_737460_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	2.97932e-138
NC_017325.1\|WP_013844144.1\|724542_727197_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NC_017325.1\|WP_003527320.1\|745306_745627_-\|YnfA-family-protein	gnl\|CDD\|224656	COG1742, COG1742, Uncharacterized conserved protein [Function unknown].	3.23612e-41
NC_017325.1\|WP_010968997.1\|730632_731493_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.76855e-63
NC_017325.1\|WP_003527346.1\|728570_729860_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41852e-81
NC_017325.1\|WP_010969004.1\|740144_741632_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	4.60612e-52

>NC_017325.1|WP_010968999.1|733124_734789_+|electron-transfer-flavoprotein-ubiquinone-oxidoreductase
MTEQQELPERESMEFDVVIVGAGPAGLAAAIRLKQVSPELSVVVLEKGAEVGAHILSGAVVDPIGIDRLLPGWRDEPDHPFKTEVTDDQFLFLGPAGSVRLPNFLMPPLMNNHGNYVVSLGNVCRWLATQAEALGVEIYPGFAATEVLYNDEGAVIGVATGDMGIERNGEPGPNFARGMELLGKYTLIGEGVRGSLAKQLIAKYKLDAGCDVPKFGIGLKELWEVKPENHKPGLVQHSFGWPLGMKTGGGSFLYHLEDNLVAVGFVVHLNYKNPYLYPFEEFQRFKTHPAIRGTFEGGKRLSYGARAITEGGYQSVPKLSFPGGALIGCSAGFVNVPRIKGSHNAVLSGILAAEKLAAAIADGRANDEPIEIERGWRESAIGQDLKRVRNVKPLWSKFGTAVGVALGGLDMWTNQLFGFSFFGTLKHGKTDAQSLEPAAKHERIDYPKPDGVLTFDRLSSVFLSNTNHEEDQPVHLQVKDWDLQKRSEYEVYAGPSSRYCPAGVYEWVEKDGQQTFVINAQNCVHCKTCDIKDPNQNINWVPPQGGEGPVYPNM
>NC_017325.1|WP_010968998.1|731565_732855_-|Hsp70-family-protein
MASALGLDFGTTNSVLAQTEGASTRSIVVESPTGRSDTTRTALSFLKDAGPSPLKVEAGQAAIREFIDNPGECRFLQSIKTFAASALFQGTLIFGKRYEFEDLMQRFLTRLRDYAGNNWEATFRRVVIGRPVHFAGANPDEKLALERYNRALTRMGFPEVHYVYEPVAAAFYFARNLDRDATVLVADFGGGTTDYSIIRFESQAGRLTATPIGHSGVGIAGDHFDFRIIDNIVSPLIGKGSLFKSFDKLLEVPSSYYANFGRWNQLSIFKTLRDFTELKKLVRASLEPEKLESFVELIEHDEGYPLYQAVSATKMRLSQAEETEFAFAPLGERARRTVRRDEFEGWIAPDLARIEEALDEVLSTTATTPDGIDKVFLTGGTSFVPAVRRLFENRFGKERIESGGELLSIAHGLALIGERDDIAAWTAAA
>NC_017325.1|WP_010968997.1|730632_731493_-|uracil-DNA-glycosylase
MISANDLSRSELAALLAFHAEAGVEWLLEEEPVDRLAEFEAMKSRRAQSRAVPQTGATAAEPQQSAPPAAARERRPAPPAPPPVVAIPDEQAIKEAQFVADAARSLGELRTAMEAFAGCNLRNSARNLVFAEGSAASGVMIIGPMPYADDDRDGRPFAGRHGEMLERMLSGIGLSREDVLLANAVPWRPPGNRVPSAREADICRPFIERQIALAEPKQLLLLGNFTARFFFGGETIHQLRGEWRELTFGGTSIPTLATLHPQDLVAAPINKRFAWLDLLAFKSRLG
>NC_017325.1|WP_003527344.1|730317_730494_-|hypothetical-protein
MTARYRPIHSSFETLRYAGASSRTPFNSFGSAANEQLTAIGLARTTRPAQIFAEFIQR
>NC_017325.1|WP_003527345.1|730124_730280_-|hypothetical-protein
MSKPLDSIRALVDTISDIRTAVRASREYSRLSIASDGRRVHDGAASRLLPS
>NC_017325.1|WP_003527346.1|728570_729860_-|MFS-transporter
MLANFASVFSLMLSTFLMMVAFGLQSYVIPVRSVAESWSTLTISIFATGYTLGFTLSCIVTPKFVLRVGHVRVFTALITLLSIAILMCGLVVDWRAWIGFRAVSGFAIAGSYLVIESWLNERVTNENRGLLFSLYLITTMVGTIGGQYLVPLGDPSNTSLFILCGVLFSLALLPTALSSSPMPAPPARANFDIPALYRRSPVAVVGGFLAGALSGAWLNLGGVFTQKIGLSTGEGATLLASLLAGSAISQVPIGRASDRMDRRIVMVACGIAGVVSCLAMSVSIASSPPVLYALAACIGTVLFPIYALNVAHANDLARPDEYVEISSGLMITYGLGTISGPLMVGPVMDRFGPVALFIALAVYFALYSGYAAWRILQREQHDGLVAKTDFQATTVLPTPGPDVTGPLAQQDAGELIEDDTVPAWEQRAE
>NC_017325.1|WP_010968996.1|727622_728561_+|DMT-family-transporter
MDADDASPMKGIVLKVLSVVVFVCMSTCIKAAGDDIPTGQITFYRSAFAMVPILGFLACRGALRDAFRTTDITGHLVRGFVGILAMSCGFYGLVHLPLPEAIAIGYAMPLLAVAFAAIFLGEIVRLYRWSAVFVGLAGVFIITWPRLTLFNEGGFGSAEAMGAVAVLLSAALGATAMVLVRKLVQKERTHTIVLYFSLSAAVFSLATLPFGWSELSWQAFVLLTIAGFCGGVGQILLTESYRHADMSTIAPFEYTSIVLGIVIGYFLFGDVPTATMLAGTAIVVGAGIFIIYREHRLGLERKGARKHVTPQG
>NC_017325.1|WP_013844144.1|724542_727197_-|aminopeptidase-N
MRTNTGQIVHLENYRPTDFVLERVDLTFELDPRETKVEARMIFHRREGVSPSAPLVLDGDELTMTGLLLDQVAVPGTLYEATDDTLTIRGLPEAAPFEITVTTALSPETNTKLMGLYRTSDVYCTQCEAEGFRRITYFPDRPDVLAVYTVNIIADKASAPLLLSNGNYLGGADMGDGRHFASWFDPHPKPSYLFALVAGDLGVVEDAFTTASGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEEVFGREYDLDIFMIVAVSDFNMGAMENKGLNIFNDKYVLADPETATDADYANIEAIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADMRSRAVKRIAEVRHLKSEQFPEDAGPLAHPVRPTQYREINNFYTTTVYEKGSEVTRMIATILGRDLFKKGMDLYFERHDGQAVTIEDFIACFEAASGRDLKQFSLWYHQAGTPLVTASGTYDAARQTYTLSLEQTVPPTPGQSSKAPMHIPLRFGLLLPDGSEARPSAVSGAEITGDVLHLTERKQTVTFSGIPSEPVPSFNRGFSAPVNLHLTQSAEHRALIARHETDLFARWQALNAMALDNLVKAAAEARTGQPIDCDDALVDALLAAAGDDRLEPAFRSQVMSLPSETDIGREIGSNNDPDAIYAGRQAILAAIATAGKDTFARLVNEMSLSGPFRPDADSAGRRALRNSGLSYLVYADGSPDKAADAFSSANNMTDLSQALTLLAHRFPDARETADALAVFKKRFADNALVIDKWFAIQATIPGASTLDRVRALMSDPLFNASNPNRVRSLVGTFAFANATGFNRIDGEGYRFLARQILDIDTRNPQLAARILTSMRSWRSLEKIRAGHARSALEEIARASNLSADVSDIVDRMLKDEH
>NC_017325.1|WP_013844143.1|721861_724189_-|PAS-domain-containing-protein
MDKMADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAFLLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTEFLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKRTRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDAARLMHVEDRGIYRVARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVIRTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQISSGLTMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKVRGAVTLTIADSGIGIPKGALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIPDRG
>NC_017325.1|WP_026029880.1|718890_721851_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAEAIERSLSDIDVVAIRPASQADAKAALSVLKDAAKGSDHIAKLIASDAPLKDFLVAAFALSPFLRDTARSHPAILEALLSETLPAFLKRRIEAARVAWRGDAAGAALPDAEIMTRLRRAKREVAFAVALADLSRLFGGRETTGWLSDFAEAAVSAAIDHLLLGAHESGKFVLKDSSAPSTASGVVVLGMGKLGAGELNYSSDIDLVVFYDPQSSIITNRDDAPETFARLLRRLIRILQERTGDGYVFRTDLRLRPDPGSTPLAIPVEAAMLYYESRGQNWERAAFIKARPIAGDLEAGERFLKELTPFVFRKYLDYAAIADIHSIKRQIHAHKGHGEIAVKGHNIKLGRGGIREIEFFVQTQQLIAGGRTPALRLRQTETMLRMLAESGWIDGATAEELIEAYWFLRDVEHRIQMVHDEQTHLLPETEPELRRIAYMLGFEDTASFSNALSRVLRTVERRYAQLFEQEAKLSTETGNLVFTGQQDDPDTLETLKKLGFQRPSDIANIIRTWHYGRYRATQSVEARERLTELTPELLRVFGESRRADEAFLRFDHFLSGLPAGIQLFSLLGNNPGLLSLIVNIMSSAPRLADIIAAKPHVFDGMLEPGLLAELPTRDYLAPRIATFVGGGRHYEEVLDRLRIIAAEQRFLIGIRLLTGAITGLQAGRALTDLADLIIAAALDAVLEEVRSAHGRFPGGRVAIVGMGKLGSHELTAGSDIDLILLYDYDDEVLESDGAKPLDPVRYFTRVTQRLIAALSAPTAEGILYDVDMRLRPSGNKGPVATRITAFAKYQRTEAWTWEHLALTRARRICGDESLVGEAEAIFAEILTEKRDIAKIRKDVEEMRGLIDKEKPPKDIWDFKLIPGGLVDIEFIAQYLALVAPARGVTSPPAGTHTLEALKALGAGMMNANDLDTAAEALVLFTELSQLVRLCIDGDFDPKEAPAGLVDLVCRAGDYPDLTHLEADIRRLSKAVRRIFQGVVAAA
>NC_017325.1|WP_010969000.1|735353_736352_+|ABC-transporter-substrate-binding-protein
MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAELVVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVPKYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAGFTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCNTVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQASGEEGAKHFLEENPDLWTKWVSPEVAEKIKAAL
>NC_017325.1|WP_003527334.1|736572_737460_+|proline/glycine-betaine-ABC-transporter-permease
MEWLTKFPHMDDDRLRQLKKIIDEGFRSFTRAYGDAIESFFDPLQFFLIHAERFMTRTPWPIILILIAVIAWFASRNWKIVAGAIGTLLLIGYLDMWDDTMKTISMIFVCTVLSIAIGIPMGIIMSRSDRFQNIVNPVLDVMQTMPSFVYLIPVVMLLGIGKVPGLIAVVIYAIPPMIRLTNLGIRLVDKDVLEAADAFGSSNWQKLKNVQMPLALPTIMAGINQTIMMALAMVVIASMIGVQGLGQPVLKAIANQYFTLGIFNGLAIVGIAIIFDRVSQAYGRRLQRHREIIHG
>NC_017325.1|WP_014529126.1|738662_739064_+|helix-turn-helix-transcriptional-regulator
MSRPRAKLTNTFPGCPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSLTPRMLTRQLRELEEAALLSRTVFPVVPPRVDYALTARGESLKPVIMALKAWGDENVLCDGDSMTLKPLESRSRPELKRA
>NC_017325.1|WP_010969003.1|739202_740129_+|diacylglycerol-kinase-family-lipid-kinase
MKVKAIFNRDGGTFRTTDMDAYSRKVEEDFRAAGHEIEIAVVGADEMRDTLETACGRGDLDAIVAGGGDGTISAAAGVAWKTGMPLGIVPAGTMNLVARSLKLPLDIWKVPEVLANGRIIDADIGSADGRAFVHQFSMGLHARMVRYRQSYRFASRLGKISASTRAAIGVIFNPPDFEIEFDADGHRERRHVSAISVSNNHFGHDTLMYAEDLTSGHLGFYTAPPLSPAGVAKLSFDILRGKFRSSTLITEMSALTVDLHFPKMDRKINCVIDGELVPIRSGRVALRVHPGELKLLVGSQESNAGKTV
>NC_017325.1|WP_010969004.1|740144_741632_-|glycosyltransferase-family-39-protein
MLEAVNRRPGAAVLAVAGYFLLCIILRVSVSSSLEIDEAEQAFLSQFLALGYGPQPPFYNWLQYGLAELIGPSLATMTILKNGLLFLCCLFYGLAARLVLADRRLPPIAMLGVLTLPPVFLLAQRDLSHTIAALFAVSLFLYGFLRTLKRPSLFSYLLTGVAVGIGLMAKYNFVLVPVAAIVAVLPERELRARILDWRILPAIAIATLIVLPHAYWMLQNFGFASGGTLNEMREREAEGLLLQAFYGVYSLGSAIIGGSLGPLLVFGLVFRGKLRAIWQAESQWSRIIGRMLALCLIAVLLVVLGVAATHVREKWLVLFLVLIPLYLCLKIEAANIDLTDSLRRFFLLVCVIALGALVMVSARAVVRPWFGDYSRLNIPYAAFAEAVAQAEGGQPALILANDKQIAGNLRTQFSRAQVTMPRPSNALPVDMSRRPLLLVWHDDAQPEAPVPDLLRNALSELGVPGAAAAPRHLALPYLYGTGSDRYGFSYIWVAE
>NC_017325.1|WP_010969005.1|741624_742644_-|glycosyltransferase-family-2-protein
MNRIEEPVKPMTEVLEGVELSIVVPVFNEEESVGPLVTRIRAAMAGFLKSWELILVDDGSTDRTLPNARKELSNPDLQLKIIELQKNFGQTAAMQAGIDAASGRLIATLDGDLQNDPADIPNMVAAIEERGLDLLVGWRQNRRDALILRKIPSWCANVLIGKITGVRLHDYGCSLKIYRGSIIKQVKLMGEMHRFIPAWVAGVVPSSRIGEMPVTHHARHYGTSKYGISRTFRVILDLLAVLFFMRYKARPGHFFGSIGLAAGGLSVLILLYLAIDKFILGNDIGTRPMLIVGVMLFLSSIQLITTGILSEMMARAYFRDDEVTSYIVRQTFEREQPHA
>NC_017325.1|WP_003527322.1|742739_743696_+|flippase-like-domain-containing-protein
MNTNWERSRRSWLARNRLALISAAAIAAYAIFVEWVWGWPVLLRQWAEIGVGPVLSALALLVATYFIRCYRIHDYFPGETRGRFLSLFRVTQVHNLLNIMLPFRAGETSFPLLMRSEFGVPLVRGTAALFVMRLLDLHALLTVAAVGLVAGRGQGAIGWVLWLIAFLSPLAFFLMKEKALTVMRRVAPAKAGPLLDEAEAGLPIGIPAFLRAWAMTMLNWAVKVVVLAWVLAIMGVAPLAASFGGALGGELSSVLPVHAPAGVGTYAAAIVAGAVSFGASADQATLETLGRASVNAHLMVIVSAVAGTMLSLLLRPKA
>NC_017325.1|WP_003527321.1|743724_745227_-|AMP-nucleosidase
MNKRISSNSVLSVATPEPFEPQLFDDPTEAVDCLEALYERNTRFLCEGFEGLGKSGRPLTRFRACYPQVSIETSSFGHVDSRLSFGYVSAPGVYTTTITRPKLFRHYLKEQLGHLMRNHGVGVTVSESSTPIPLHFAFGEGAHVEASAAESIDIPLRDLFDAPDLTTTDDEIANGSYEPGPGEPSPLAPFTAQRIDYSLARLSHYTATSARHFQNFVLFTNYQFYVDEFCAWARQQMAEGGNGYTAFIEPGNITTPAGADRPDADYSLARLPQMPAYHLKKKGHGGITLVNIGVGPSNAKTITDHIAVLRPHVWLMLGHCAGLRNSQRLGDYVLAHAYMREDHVLDDDLPVWIPLPALAEVQVALQDAVAEVTGYKGYDLKQIMRTGTVATIDNRNWELRDQRGPVKRLSQARAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRTQVSQHLKIGILALQKLAAMPPEKLHSRKLRSFYETSFQ
>NC_017325.1|WP_003527320.1|745306_745627_-|YnfA-family-protein
MPAYAIYFLAALAEITGCFAFWSWLRLGKSALWLIPGMASLALFAWLLTMVDAAAAGRTYAAYGGVYIVASLSWLWLAEGVRPDHWDMTGAAVALAGSAIILAGPR
>NC_017325.1|WP_010969006.1|745701_745875_-|hypothetical-protein
MAALVSSAILSLRLLILAGLLIAPIGAVAYSKVAGYGIGKNGAGFVLFVTLQRQAMS

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Crispr_ID: NC_017325_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017325_2

1555925-1556037

Orphan

Consensus_repeat	Method
ATTCCTGTGACGAGCACAGGAATGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017325_2

>merge|NC_017325|2|1555925-1556037|CRISPRCasFinder
ATTCCTGTGACGAGCACAGGAATGAGGGAGGCGGGGATGCACGGCCTGCGAGAAGTATTCCGATGGACCGTACCCTCTCTGCCTCATTCCTGTGACAAGCACAGGAATGAGGG

>NC_017325|2|2|1555925-1556037|CRISPRCasFinder
ATTCCTGTGACGAGCACAGGAATGAGGG	AGGCGGGGATGCACGGCCTGCGAGAAGTATTCCGATGGACCGTACCCTCTCTGCCTC
ATTCCTGTGACAAGCACAGGAATGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017325.1\|WP_014529459.1\|1563558_1564380_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180462
NC_017325.1\|WP_010969508.1\|1564677_1565361_+\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NC_017325.1\|WP_010969518.1\|1551917_1552313_+\|GFA-family-protein	unknown	unknown	gnl\|CDD\|226314
NC_017325.1\|WP_013844511.1\|1552334_1553273_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_003534108.1\|1567480_1568218_-\|autoinducer-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|99777
NC_017325.1\|WP_003535070.1\|1550408_1551782_+\|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl\|CDD\|366662
NC_017325.1\|WP_010969515.1\|1555113_1555536_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NC_017325.1\|WP_014529457.1\|1553378_1555112_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227002
NC_017325.1\|WP_010969519.1\|1548784_1550176_+\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|213618
NC_017325.1\|WP_003534093.1\|1556162_1558082_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NC_017325.1\|WP_003535074.1\|1548037_1548580_+\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NC_017325.1\|WP_010969520.1\|1546327_1547011_-\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NC_017325.1\|WP_013844508.1\|1560873_1561896_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NC_017325.1\|WP_010969513.1\|1558350_1560033_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NC_017325.1\|WP_003534106.1\|1566679_1567324_-\|autoinducer-synthase	unknown	unknown	gnl\|CDD\|226430
NC_017325.1\|WP_013844507.1\|1565384_1566512_-\|DUF2865-domain-containing-protein	unknown	unknown	gnl\|CDD\|371363
NC_017325.1\|WP_010969521.1\|1544399_1546295_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225536
NC_017325.1\|WP_003535076.1\|1547230_1547926_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_017325.1\|WP_010969512.1\|1560035_1560863_+\|TolB-family-protein	unknown	unknown	gnl\|CDD\|223893
NC_017325.1\|WP_014529458.1\|1561993_1563187_+\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|227609

Protein	Function_ID	Function_description	E-value
NC_017325.1\|WP_014529459.1\|1563558_1564380_+\|SDR-family-oxidoreductase	gnl\|CDD\|180462	PRK06198, PRK06198, short chain dehydrogenase; Provisional.	1.03274e-164
NC_017325.1\|WP_010969508.1\|1564677_1565361_+\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	4.8092e-111
NC_017325.1\|WP_010969518.1\|1551917_1552313_+\|GFA-family-protein	gnl\|CDD\|226314	COG3791, COG3791, Uncharacterized conserved protein [Function unknown].	6.93053e-44
NC_017325.1\|WP_003534108.1\|1567480_1568218_-\|autoinducer-binding-domain-containing-protein	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	3.50703e-21
NC_017325.1\|WP_010969519.1\|1548784_1550176_+\|glutathione-disulfide-reductase	gnl\|CDD\|213618	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. [Energy metabolism, Electron transport].	0
NC_017325.1\|WP_010969515.1\|1555113_1555536_-\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	2.76293e-23
NC_017325.1\|WP_014529457.1\|1553378_1555112_-\|hypothetical-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	0
NC_017325.1\|WP_003535070.1\|1550408_1551782_+\|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl\|CDD\|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NC_017325.1\|WP_003534093.1\|1556162_1558082_-\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	7.21123e-140
NC_017325.1\|WP_003535074.1\|1548037_1548580_+\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	3.19008e-64
NC_017325.1\|WP_010969520.1\|1546327_1547011_-\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	2.43772e-103
NC_017325.1\|WP_013844508.1\|1560873_1561896_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	1.08222e-88
NC_017325.1\|WP_010969513.1\|1558350_1560033_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NC_017325.1\|WP_003534106.1\|1566679_1567324_-\|autoinducer-synthase	gnl\|CDD\|226430	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.55042e-97
NC_017325.1\|WP_013844507.1\|1565384_1566512_-\|DUF2865-domain-containing-protein	gnl\|CDD\|371363	pfam11064, DUF2865, Protein of unknown function (DUF2865). This bacterial family of proteins has no known function.	1.21353e-30
NC_017325.1\|WP_010969521.1\|1544399_1546295_+\|murein-L,D-transpeptidase	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_017325.1\|WP_003535076.1\|1547230_1547926_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.21528e-117
NC_017325.1\|WP_010969512.1\|1560035_1560863_+\|TolB-family-protein	gnl\|CDD\|223893	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].	1.73907e-62
NC_017325.1\|WP_014529458.1\|1561993_1563187_+\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	7.15591e-103

>NC_017325.1|WP_010969515.1|1555113_1555536_-|pilus-assembly-protein
MSVFNRLLASRKGAAAIEFAIIAPLFFMCVLTLIAYGIYLSAAHSIQQVAADAARTAIAGLSLEERERLATDYIRRTTMNQTFIDSSRMNVTVRDDANNTNQFTVTISYDASDLPIWKLFTFALPGEQIERYATIRVGGI
>NC_017325.1|WP_014529457.1|1553378_1555112_-|hypothetical-protein
MHGATTAFRRCLKSRTGNIGVSAALVMPLVVASMGLGIDYGYLTLQRRELQSVADLASIAAAADVSSAEEAVLAHFRSNDLGFAVSTPSGLMTVDGKLLPNDVETAAKGVATIVRGRYVPDPAIDAGQRFIRGALPADAVQVTLEKKGDIYLAALFSEPPDLSVIGTAASSKIAAFSVGSRLASLNGGLLNAILGQMLGTNIALKVMDYEALIDADIDIQPFLKIIATRLSLTAASYEDVLTAELTVPQLLGSLRLVQGLSGTVTSALKTVELATAGNKQTLTLAQILNIDPKKSLGVDAGSDWAMKVSALQIVSAAAVIANGEHQIALDAVAGLPGIASVKVRLAIGEPPLETPSHRLGSPGAAVRTAQTRLAVEVVIDGLAALAGTRIRLPIYVELAHAEAKQSDIRCYGGTPENAAVIIDAVPGVAEIALGDVDPTVLSSFSSDARVTRARLLDGLIKIDGIAHVESKNLQPSRLAFSPAEVSSRTIKSVSTRDILSSTTRTLLGNLDAQINVGGLLSIGSPTLLQQALAQTLGAVTAPVDQLLYNLLLLVGVRVGEADVRVTGVKCQRPVLVQ
>NC_017325.1|WP_013844511.1|1552334_1553273_-|hypothetical-protein
MPPAQEWGHAQQMQRVAEKGSSEQQVPTGLTVGDLVRNPNFPQILQAGARTLIALNDLFPRVARLVASHQKWMLTQAAYSLHLERDVNNPESGITAARLLKFMRDTGGASRNTAAAFLAELVAYKMLQPASGGRTKRARPLEPTEVSETAMRLWFKSQMSTIDLLDGGTRVERVEADKSIFERAQPLAARRLLSDSRWTTPPKGVAIFVWSESGGVILDDLMTRVSEFAPMDGKVWVEVSLAKLAEHYLISNTHVRRIFARADAAGFLGKSEDGRRGRFWLSARLIEEYVSWQAVKIEALASAYDQASDWAA
>NC_017325.1|WP_010969518.1|1551917_1552313_+|GFA-family-protein
MEINEGGCLCGAVRFKTRGKLRELIFCHCSQCRKQTGLYYAATNVLDREMEVEGVENVTWYRSSNEARRGFCRYCGSALFWKADGLDYTSILAGTFDGSVALEPGYHIFCADKGHYYDISDDLPRFAGSRP
>NC_017325.1|WP_003535070.1|1550408_1551782_+|3-deoxy-7-phosphoheptulonate-synthase-class-II
MAQTWTPNSWRQKPIQQVPDYPDLAVLDSVEARLAKYPPLVFAGEARRLKSALANVAEGRGFLLQGGDCAESFAEHGADTIRDFFRAFLQMAVVLTFGAQQPVVKVGRIAGQFAKPRSSGVEKQGDVTLPSYRGDIINGIEFTEEARVPNPERQVMAYRQSAATLNLLRAFAMGGYANLENVHQWMLGFVKDSPQAERYRKLADRISETMDFMKAIGITAENHPSLRETDFFTSHEALLLGYEQALTRVDSTSGDWYATSGHMIWIGDRTRQPDHAHIEYCRGIKNPLGLKCGPSLTADGLLELIDILNPANEAGRLTLICRFGHDKVAEHLPRLIRAVEREGKKVVWSCDPMHGNTITLNNYKTRPFERILSEVESFFQIHRAEGSHPGGIHIEMTGNDVTECTGGARALSGDDLADRYHTHCDPRLNADQALELAFLLAERMKGGRDEKKMVVNG
>NC_017325.1|WP_010969519.1|1548784_1550176_+|glutathione-disulfide-reductase
MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYRVRNGERVG
>NC_017325.1|WP_003535074.1|1548037_1548580_+|DUF2059-domain-containing-protein
MNKFAGLARTFATAAILVSVSVPAVRAQDVTEDQIKAARATIAALGVTNSFDNILPNLAERLKNTLIQASPNHQELITATVDEKALSLAGRRSDLEREAATIYAKTFTVEELNAIADFYNSTAGKKLLNDGPIASREMLKAADIWAAGVSRDLTSEATKSLDEKIGNAPAANAGAAAPAQ
>NC_017325.1|WP_003535076.1|1547230_1547926_+|ribose-5-phosphate-isomerase-RpiA
MDARQMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASGFQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLGAFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGRIPDADALAVELNAIPGVVEHGLFIDVASMAIIAGPEGARTLTAS
>NC_017325.1|WP_010969520.1|1546327_1547011_-|phosphoglycolate-phosphatase
MSLPLVVFDLDGTLVDTAPDLVASLNHAVTQAGIEPVTYADLTHLVGHGARAMIERTFALRGRTIAEEELTWQMKEFVDFYHGSMPGESLPYPGLIEALDRLQDAGLKLAVCTNKPEMLAKRLLEGLGLLGRFAAISGGDTFTVRKPHADHLLSTVSNAGGMAERAVMVGDSLNDVLVARNASVPSIVVPFGYSDVPIESLLPDRIIGHFDELTPDLVETVLSRKPK
>NC_017325.1|WP_010969521.1|1544399_1546295_+|murein-L,D-transpeptidase
MRIIKSAAIVTLMSGCVVATMDVQPASAITFMDFIRGGKKRDVQEQVQPRRQLPGVDMFAPQRLDQKAAKPPRITGPRYYTYKAEPLRRIATDRLVDPVVTGSVLNGALPPMLRSPLADARQFLPEVDVRAPAEVAKAVENFYGTRTDFLWIEGTGVSGRAKAALGVLSDAAKVGLDPLDYAVIVPPEDFDRGDMIAREKDLVRFEIAMSAAVLTYVQDTVRGRIDPNRISGYHDFKRKNVDLLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAAPRVEIAPGTLLKPGESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGGRVVPSTAVNWYGSTNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLGVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNKDGTVEYFDDVYERDMYMNRAFEATRKARSLEG
>NC_017325.1|WP_003534093.1|1556162_1558082_-|LTA-synthase-family-protein
MARIDSAVSSSQVYADGESSSARYTRTLSGARSALFTLLIAIALVFTVEVIVRWSWPDTVAYFADPMRPAWTTVAVFFLAMLGVDALFGREHKAALLIAPLAVVPAFISQQKQVFLSDPLYPTDFLFGRQIMELMPVLVKDRPWTAVGVVAGLIAAIVVGALLLRFAWQNFPKLTRRERLMRIAFALPLLVAFWNIMDYNQFSWIRDRLRVIPIMWDQTENYRHNGFALAFAINLPMANVNAPAGYMADAIDRIPVKPLPAGTTHRGKPDVIVLMSESFWDPTRLPKVKLTPDPMPTIRELQGGNVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRNPIPSLATFFRGEGYVSRAIHPFQGWFWNRTAVYKAFGFDMFRSEENMPAMQKRGIFASDESLTKEIIRQADEVEDPFFFFAVTLQGHGPYEANRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDSLKMLMDWAKERDRETIIVLFGDHLPPLNTVYSSTGYMKGITAERKGPKDQMKAEHETPLVVWSNKTGPKKNIGTISPAFLSYQILKQAGYEHPYYTGFLGKVYDHYRVLDRYMLIRKNGKDVADWLRQPKVPASLRDYRFLQHDMMFGKRYSTERFFKSHAELYSAGL
>NC_017325.1|WP_010969513.1|1558350_1560033_+|NAD+-synthase
MTAQKAAPSTLRIAVAQLNPTVGDIAGNVAKAREARTAAAREGADLLLLTELFISGYPPEDLVLKPAFLKACEQAVEKLAAETADGGPGVVIGFPRQAAGLRHNSVAVLDGGRVIAIRDKVDLPNYGEFDEKRVFDAGEMPGPVNFRGVRIGIPVCEDIWGDLGVCETLAESGAEILLSPNGSPYYRGKVDVRHQVVLRQVIETGLPMIYANQLGGQDELVFDGASFAFNADKSLAFQMSQFEEAVAVSEWKRGAGGWISANGLKSRIPEGEEADYRACMLGFRDYVNKNGFRNVVLGLSGGIDSAICTALAVDALGEERVRTVMLPYRYTSRESLRDAEACAKALGCRYDIVAIEEPVEGFLSALADTFEGTEAGITEENLQSRTRGTILMAISNKFGSMVVTTGNKSEMSVGYATLYGDMNGGFNPIKDLYKMQVYALARWRNGTVPPGALGPSGEVIPQNIIDKAPSAELRPDQTDQDSLPPYPVLDDILECLVEKEMSTEEIVARGHEEATVHRIEHLLYIAEYKRRQSAPGVKITRKNFGRDRRYPITNRFRDRG
>NC_017325.1|WP_010969512.1|1560035_1560863_+|TolB-family-protein
MRSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDGRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYEPEE
>NC_017325.1|WP_013844508.1|1560873_1561896_-|LacI-family-DNA-binding-transcriptional-regulator
MAHPFLVKDIAFQAGLSTATVDRVLNGRRGVRQQTVMRVNAAIRELERQQAGLEVQGRKYAVDVVMEAPERFTEAVRKAFESEAATFMPTVFRSRFHFAETMRPQDISQLLDRIRLRGTDGVVLKAPDVPEIAAAVARLENAGVAVVTLVTDLPHSSRTAYAGADNRAAGETAAYLIGERFADRPATVLVTISSSRFRGEEEREIGFRRVLREKYPHIGVVEISEGHGRNEETGALALKAIASHPEINAAYSIGGGNRAVLDAFGQLQRGCVLFVAHDLDEDNLDLLRQGLVQFVLHHDLKTDVRMAFHAVLERRGALRASEKRHLSAVEVITPYNLPRI
>NC_017325.1|WP_014529458.1|1561993_1563187_+|phytanoyl-CoA-dioxygenase-family-protein
MKTDNPARARLERVWLNEAARDIEEFRAAVEHRVSLADYPHAADCQKNILIYDSARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVANLLQVSSAFGRAMETVDREHMCVVLFPALKVLAAGGKLTQDEIANAVAACAEGYSFPTNLDRDPPVGGLAPRTQAQLMHEALAGEWSVEAFAEALADQAAKKLS
>NC_017325.1|WP_014529459.1|1563558_1564380_+|SDR-family-oxidoreductase
MSTDHALLDGKIAIVTGGTQGLGATIAALFAERGAAGVVICGRNAAKGEAKAAEIAAATGSKVVYVPADLERVEDARAVAAACDRAFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEVIKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHDAPANWLEKAAASQPFGRLVDPAEVARACAYLSSAESGLMTGSVICFDQSIWGAYDASPHPEAPL
>NC_017325.1|WP_010969508.1|1564677_1565361_+|5,6-dimethylbenzimidazole-synthase
MLPDPNGCLTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
>NC_017325.1|WP_013844507.1|1565384_1566512_-|DUF2865-domain-containing-protein
MSASPKVASKIRRIAAVLVPLALAAAGPAAASGVCERLSARLAGLPTGFTTNASLRDFTGAVSRQNIELRRAKNDRRRMECSSDSVVVIGGDDEAACAELDDTIARMEANLRQLKAQRRHLIGGGDDDVRRRILAAMELNGCSGAPREGWDAGSAEGQFASAADGTEVHRNILRDLPPDSGAYPLLLDAPRAELPLTDDDFAGSLRTMCVRTCDGAFFPISSHATPADFGRDADLCRARCPGAETELYYHVLATEEADQMVSATTGRPYTDLPTAFAYRARSVGSPGICGCGIPDPATDANGQKAVSAGKLTVVSPSVITIGSEKKAPAKPIAERPYDPAKNKVRVVGPTFLPQEESAIDLKHPLGPRYQPLQEN
>NC_017325.1|WP_003534106.1|1566679_1567324_-|autoinducer-synthase
MIRIVNGNGRSQHPQAIDEMFRLRKRVFHDFLKWDVKTEGDWEIDHYDKANPLYVMSYSPDTGKIRGSLRLLPTLGPNMLDDTFPILLGDNPEIRSASVWESSRFCIDPEISQDRASNQVTIAAAELMCGVGEMSLASGISHIVTVTDVFLERMFRRMGCPGERIADPHRIGSVHAVAIAWEVSRNLLETMKAVASIEGTVLDRPMSLETARAA
>NC_017325.1|WP_003534108.1|1567480_1568218_-|autoinducer-binding-domain-containing-protein
MANQQAVLNLLDIVEYGGCADPERFFALMRRTFNISHLLYLEAESLPDGLRICRLHHTFGAYAAEIYAARGLYRIDPILKLALGGVRPVEWATARRRFPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLAIGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALIPTI

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Crispr_ID: NC_017325_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017325_3

2845539-2845623

Orphan

Consensus_repeat	Method
CCGCTGCGCACTTTTCCTGGAATTGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017325_3

>merge|NC_017325|3|2845539-2845623|CRISPRCasFinder
CCGCTGCGCACTTTTCCTGGAATTGCTCACCCTTCTGCCGCAACTCCGGACGGAAAACCGCTGCGCACTTTTCCTGGAATTGCTC

>NC_017325|3|3|2845539-2845623|CRISPRCasFinder
CCGCTGCGCACTTTTCCTGGAATTGCTC	ACCCTTCTGCCGCAACTCCGGACGGAAAA
CCGCTGCGCACTTTTCCTGGAATTGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017325.1\|WP_010970142.1\|2838778_2839636_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NC_017325.1\|WP_010970149.1\|2845886_2846222_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_010970151.1\|2852923_2853292_-\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NC_017325.1\|WP_013844832.1\|2847454_2848651_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_017325.1\|WP_003527522.1\|2843292_2843886_+\|HutD-family-protein	unknown	unknown	gnl\|CDD\|226281
NC_017325.1\|WP_003527539.1\|2846436_2846697_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_003527557.1\|2851847_2852549_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_017325.1\|WP_003527524.1\|2843940_2844195_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_010970145.1\|2841979_2843305_+\|YjiH-family-protein	unknown	unknown	gnl\|CDD\|225851
NC_017325.1\|WP_003527531.1\|2844875_2845076_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_003527560.1\|2853534_2854197_-\|histidine-phosphotransferase	unknown	unknown	gnl\|CDD\|227675
NC_017325.1\|WP_003527553.1\|2850492_2850774_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225261
NC_017325.1\|WP_003527546.1\|2850066_2850342_+\|DUF1153-domain-containing-protein	unknown	unknown	gnl\|CDD\|369009
NC_017325.1\|WP_003527528.1\|2844581_2844782_+\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_014529883.1\|2839628_2840456_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NC_017325.1\|WP_003527555.1\|2850946_2851297_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_003527526.1\|2844248_2844437_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_010970147.1\|2845057_2845387_-\|hypothetical-protein	unknown	unknown	unknown
NC_017325.1\|WP_013844833.1\|2848914_2849880_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|99777
NC_017325.1\|WP_010970144.1\|2840448_2841948_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|225533

Protein	Function_ID	Function_description	E-value
NC_017325.1\|WP_010970142.1\|2838778_2839636_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	2.32462e-130
NC_017325.1\|WP_013844832.1\|2847454_2848651_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NC_017325.1\|WP_003527522.1\|2843292_2843886_+\|HutD-family-protein	gnl\|CDD\|226281	COG3758, COG3758, Uncharacterized protein conserved in bacteria [Function unknown].	7.32236e-87
NC_017325.1\|WP_010970145.1\|2841979_2843305_+\|YjiH-family-protein	gnl\|CDD\|225851	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown].	9.48505e-137
NC_017325.1\|WP_003527560.1\|2853534_2854197_-\|histidine-phosphotransferase	gnl\|CDD\|227675	COG5385, COG5385, Uncharacterized protein conserved in bacteria [Function unknown].	1.02406e-121
NC_017325.1\|WP_010970151.1\|2852923_2853292_-\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	7.39962e-12
NC_017325.1\|WP_003527557.1\|2851847_2852549_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.01451e-76
NC_017325.1\|WP_013844833.1\|2848914_2849880_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|99777	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental nitrate or nitrite is present under anerobic conditions. FixJ is involved in the transcriptional activation of nitrogen fixation genes. The group also includes small proteins which lack an N-terminal signaling domain, such as Bacillus subtilis GerE. GerE is dimeric and acts in conjunction with sigmaK as an activator or a repressor modulating the expression of various genes in particular those encoding the spore-coat. These LuxR family regulators may share a similar organization of their target binding sites. For example the LuxR dimer binds the lux box, a 20bp inverted repeat, GerE dimers bind two 12bp consensus sequences in inverted orientation having the central four bases overlap, and the NarL dimer binds two 7bp inverted repeats separated by 2 bp.	2.02106e-18
NC_017325.1\|WP_014529883.1\|2839628_2840456_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	6.67975e-167
NC_017325.1\|WP_003527546.1\|2850066_2850342_+\|DUF1153-domain-containing-protein	gnl\|CDD\|369009	pfam06627, DUF1153, Protein of unknown function (DUF1153). This family consists of several short, hypothetical bacterial proteins of unknown function.	1.64665e-53
NC_017325.1\|WP_003527553.1\|2850492_2850774_+\|N-acetyltransferase	gnl\|CDD\|225261	COG2388, COG2388, Predicted acetyltransferase [General function prediction only].	2.75564e-39
NC_017325.1\|WP_010970144.1\|2840448_2841948_+\|histidine-ammonia-lyase	gnl\|CDD\|225533	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism].	0

>NC_017325.1|WP_010970147.1|2845057_2845387_-|hypothetical-protein
MTVIDCTKLERDAGGKPHTLFLIPLRVGQEDRMPAPKEMDSALTSLPLRIGAYVPDDLLEDWFAPGTGMNPPSEKALTEAAAYGRRFECEFKYYPERKEGVFWKWVPAI
>NC_017325.1|WP_003527531.1|2844875_2845076_-|hypothetical-protein
MGTSHLNEGNLEAKAINAVIEELQRQAAENPSKLQVRQAGDKLAVHGEIDVDAVVMVVVGSMAGGP
>NC_017325.1|WP_003527528.1|2844581_2844782_+|hypothetical-protein
MSRTWERLALIGAAVIIIASAIFYVYVDRFSSTNSTRIEDTKVNADGINTIDENPPSATGDKDNPS
>NC_017325.1|WP_003527526.1|2844248_2844437_-|hypothetical-protein
MRHAEIGKLDKSQARHVWDVAEYCRRTGINKAEERRLIRVLGRFASSHELQMNIVRPQTRIR
>NC_017325.1|WP_003527524.1|2843940_2844195_-|hypothetical-protein
MQPQEARVWATLAGALLFISGLLYMAWEALGRRRLSEPPQPAERNPKQTLEPRGQGLRFLSPLRNWLGVALMLVGGILLLFGMR
>NC_017325.1|WP_003527522.1|2843292_2843886_+|HutD-family-protein
MARLTMMRILRSSEYRHMPWKNGGGETVEIAVSPDRATIADFDWRISMATVATNGAFSIFPGIDRTLSILEGSGMTLAIEGRQPKLLTTSDTPLTFPADVPTSATLVDGPVTDLNVMTRRQALKHRVRRIHVEGSQPVTTSARDLVLFCHRGSVALVTEGVSATLHGLDAAVLVQPGTLTLSADIASEAFLIEIGPA
>NC_017325.1|WP_010970145.1|2841979_2843305_+|YjiH-family-protein
MTHITTEAGGSRGGAALRLILFSLIGIFLFFVPVEINGKSTILLDHAATAISTHARPVAIGFVLLLMAYGAFGPIAKGTWRKTTTDAVFSVLRVLGLVLAGLYLAGIGPEVFFAPDMLPFLFDKLVLSVGLIVPIGALALAFLIGYGLLEFTGVLVQPVMRPIWRTPGWSAIDAVASFVGSYSLALLITDRVFREGKYTVREAAIIATGFSTVSATFMIIVAKTLGLMDIWNFYFWTTLVVTFIVSAITARIWPLSRLAHEGDRDQPLPPGRSRLSVAVETGLEQAAIAKGLPTLLRESFLDGLRMAAMILPSIMAVGLIGLLAAKFTPIFDILGLTLYPFTWLAQFGEPMQAAKALASGLAEMFLPAILLKEAVPEVKFLAAVVSVSQVLFLSASVPCMLATSIPLSFRDLLVIWYIRVVLSIVVTAPIIWVGTSMGWLG
>NC_017325.1|WP_010970144.1|2840448_2841948_+|histidine-ammonia-lyase
MGEMISLDGPLTWREIASIAEGASLDLSGPARLRIAQARRIVDALVERGIRGYGINTGVGALCDVIISRENQQALSRNIILSHACGVGDPLGRVEARAVMAAQIANLTHGYSGVRVETAEMLLALLNADIIPLIPSRGSVGYLTHAAAIGLVLIGHGSAMQGTERLSGADALARLGLAPLRLEAKEGLSLVNGTPCATGLAALALARTERLFAWADAAAAMTYENLGSQANAFAELPLALRQSPGLSAVGEGLRDWLADSPMLAGTAGTRTQDPLSLRAVPQVHGAARDAFGQVAEIVDRELASVTDNPAVAGSPEAPEVHSQAHAVGAALGLAMDSLAVAVAEVAAISERRIDRLVNPLVSGLPAFLAGDSGVSSGFMIAQYTAAALVAENRRLAAPASLDGGITSALQEDMLTHATPAAWKALSIVDNLERILAIELLAAAQAYELQPQAQGKAQRTAALYGHIRSAIPAYRDDRPMNEDFDRMRRLMRAAPAHGQL
>NC_017325.1|WP_014529883.1|2839628_2840456_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MADIEIRNVYKIFGHDAKKALTMVEDGLDKADILSRSGCTVGLNDVSLKIGAGKIFVIMGLSGSGKSTLVRHINRLIEPTSGEVLFDGDNILDLGAKALRAFRMRRVSMVFQSFALMPRRTVLQNVVYGQRVRGVSKDDAREIGMKWIDTVGLSGYDAKFPHQLSGGMKQRVGLARALAADTDVILMDEAFSALDPLIRGDMQDQLLQLQRNLAKTIVFITHDLDEALRIGSEIAILRDGQVVQVGTPNDILDNPANDYVARFVQRRHERPQTHG
>NC_017325.1|WP_010970142.1|2838778_2839636_+|proline/glycine-betaine-ABC-transporter-permease
MFPDSLNLSIRAPVNDFIQALVTNYGWVFKAISGVILKAVLFIEWILRGLPWWLVILAFMALAWRSSRRWSLTLAVGALLVTVGVLGLWDLTMQTLALMLMATIVSVVIGVPMGILVAKSRVVRNITLPVLDVMQTMPSFVYLIPALMLFGLGKVPAILATIIYAVPPLIRLTDLGIRQVDAEVVEAATAFGGSPGQILFGVELPLATPTIMAGLNQTIMMALSMVVVASMIGARGLGEQVLNGIQTLDVGKGLEAGIGIVILAVVLDRITQGFGKPRTEDARNG
>NC_017325.1|WP_010970149.1|2845886_2846222_-|hypothetical-protein
MNIGRLFAAGLILGGAAAAVPSASSAQSFDLYIGPDGPQLRDRRYDDDDYDYRPSRGCSERQAIRRAYRLGIRDPDIRSVTRREVAVDGVGRRGRLTTVYFANRPGCPRIG
>NC_017325.1|WP_003527539.1|2846436_2846697_-|hypothetical-protein
MADRGPTVVNTGGSGGGWAVAVIVILLVVGALFLFGGDLFDGSGGGGNTDVDVNVPNVEAPQAPSGGQETQAPSGGEGTSPGGAQQ
>NC_017325.1|WP_013844832.1|2847454_2848651_-|tRNA-2-thiouridine(34)-synthase-MnmA
MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFADLLATAKELGADALATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYLRFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHLDGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVIVGPKEALETRRVYLRDVNWLGDEELEAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALYSGTGEDARVYGGGFIRRSEREPAAEAALKALLQAPAAA
>NC_017325.1|WP_013844833.1|2848914_2849880_-|LuxR-family-transcriptional-regulator
MQSPHFASTGIRDSEAPDQTGVHVYAPGINGGVTKFAGGAAHVCGAGQGGRFQPPGQDRFSLHSGGNAGSTVTGMKDSNEPASRREAEANMPFEIDPASVRTEYELLHLMRRLISRYGFAHFMIARLPLADEQRFSERLVLSNWPAELVQQYDAGETFQTSELVERLRQTKLPVTGGPELMEPAGKGAGKAAFIRLPPHAGMGHFAVLLHTTYGEPFVAVLSGTRDEPAGAERATLYLALLQLFECLERTFDAGSGAREKLSSREVECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI
>NC_017325.1|WP_003527546.1|2850066_2850342_+|DUF1153-domain-containing-protein
MTEMMRPRVKYVIGPDGSPLTIADLPPANTRRWVIRRKAEVVAAVRGGLLSLEEACERYTLTVEEFLSWQSSINDHGLAGLRTTRIQQYRH
>NC_017325.1|WP_003527553.1|2850492_2850774_+|N-acetyltransferase
MDIAQEETNTKGRYTATLDGHTGEMTYSRSSPHLIIVDHTFVPDALRGKGVGQALALHAIEEARKGSWKIIPLCPFMRAQVMRHPEWRDVIQG
>NC_017325.1|WP_003527555.1|2850946_2851297_-|hypothetical-protein
MKARESLVRLKEFQVREKQRQLSQLQMMMAEFERMTKDLENQIVFEEKKSGISDPSHFAYPTFAKAARQRADNLQVSIRELKMQQDAAELALEEVQAEYARAAALEERDTGARLRA
>NC_017325.1|WP_003527557.1|2851847_2852549_+|response-regulator-transcription-factor
MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGYEVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREPEGSDYLETA
>NC_017325.1|WP_010970151.1|2852923_2853292_-|response-regulator
MDVRRLMIADGSDVVRKVGKRILSGMGFLVSEAPSSLEALVRCEAELPNILIVDAGLDGALDLIGNIRRLPEGASVRIYYCVVQADLKKMMAGKRAGADDFLLKPFDRKILTSVFAGQSMAA
>NC_017325.1|WP_003527560.1|2853534_2854197_-|histidine-phosphotransferase
MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNASVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVNWNGPRAIIAKNRVKLLLNLFLIAYGSIPRGGVIDITLENPEFDAIFTLNAKGRMMRVPPKLVELISGTPEEAVDAHSIQPYYTVLLAEEAGMAIDVVSTGEAIVFTARVVAPETVSA

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Crispr_ID: NC_017325_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017325_4

3684183-3684329

Orphan

Consensus_repeat	Method
TCTCCCCGCATGCGGGGAGAAGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017325_4

>merge|NC_017325|4|3684183-3684329|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGGAATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCCTCTCCCCGCATGCGGGGAGAGGGTTAGGGTGAGGGGCGGTCGTCCCCGCGCGCGGGGAGAAGGT

>NC_017325|4|4|3684183-3684329|CRISPRCasFinder
TCTCCCCGCATGCGGGGAGAAGGG	AATCGCGGGTTCGCCTTCGCACCATCTCCACACGCAGGCGCGCCGTGGCGTACGTCCCC
TCTCCCCGCATGCGGGGAGAGGGT	TAGGGTGAGGGGCGGT
CGTCCCCGCGCGCGGGGAGAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017325.1\|WP_003537743.1\|3682915_3683260_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_017325.1\|WP_010968390.1\|3684359_3685319_-\|glyoxylate/hydroxypyruvate-reductase-A	unknown	unknown	gnl\|CDD\|240641
NC_017325.1\|WP_003531955.1\|3692701_3693082_+\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|224716
NC_017325.1\|WP_013844979.1\|3681436_3682828_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|223338
NC_017325.1\|WP_010968389.1\|3683268_3684123_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NC_017325.1\|WP_003537933.1\|3676137_3677301_+\|IS4-like-element-ISRm16-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_017325.1\|WP_010968392.1\|3691513_3692581_+\|penicillin-insensitive-murein-endopeptidase	unknown	unknown	gnl\|CDD\|226293
NC_017325.1\|WP_010968385.1\|3673907_3674918_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NC_017325.1\|WP_003531959.1\|3686966_3688100_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226690
NC_017325.1\|WP_010968394.1\|3694271_3696077_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_017325.1\|WP_003531958.1\|3688099_3689182_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NC_017325.1\|WP_010968391.1\|3685329_3686958_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226641
NC_017325.1\|WP_010968387.1\|3680496_3681306_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227343
NC_017325.1\|WP_013844980.1\|3693143_3694163_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_017325.1\|WP_010968395.1\|3696094_3696913_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NC_017325.1\|WP_014529989.1\|3674925_3675909_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NC_017325.1\|WP_010968383.1\|3671031_3672318_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227298
NC_017325.1\|WP_010975503.1\|3678469_3679729_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_017325.1\|WP_003531957.1\|3689362_3691222_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NC_017325.1\|WP_013844977.1\|3672379_3673849_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|227297

Protein	Function_ID	Function_description	E-value
NC_017325.1\|WP_003537743.1\|3682915_3683260_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.39809e-11
NC_017325.1\|WP_010968390.1\|3684359_3685319_-\|glyoxylate/hydroxypyruvate-reductase-A	gnl\|CDD\|240641	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family. This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.07536e-138
NC_017325.1\|WP_003531955.1\|3692701_3693082_+\|methylglyoxal-synthase	gnl\|CDD\|224716	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism].	2.60323e-72
NC_017325.1\|WP_013844979.1\|3681436_3682828_+\|leucyl-aminopeptidase	gnl\|CDD\|223338	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism].	0
NC_017325.1\|WP_010968389.1\|3683268_3684123_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	1.21182e-26
NC_017325.1\|WP_003537933.1\|3676137_3677301_+\|IS4-like-element-ISRm16-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.69173e-26
NC_017325.1\|WP_010968392.1\|3691513_3692581_+\|penicillin-insensitive-murein-endopeptidase	gnl\|CDD\|226293	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane].	5.68793e-158
NC_017325.1\|WP_010968385.1\|3673907_3674918_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.38407e-115
NC_017325.1\|WP_003531959.1\|3686966_3688100_-\|ABC-transporter-permease	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_017325.1\|WP_010968394.1\|3694271_3696077_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NC_017325.1\|WP_003531958.1\|3688099_3689182_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NC_017325.1\|WP_010968391.1\|3685329_3686958_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226641	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only].	0
NC_017325.1\|WP_010968387.1\|3680496_3681306_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227343	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].	1.63751e-80
NC_017325.1\|WP_013844980.1\|3693143_3694163_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.33162e-165
NC_017325.1\|WP_010968395.1\|3696094_3696913_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.01351e-123
NC_017325.1\|WP_014529989.1\|3674925_3675909_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	1.0007e-55
NC_017325.1\|WP_010968383.1\|3671031_3672318_+\|transcriptional-regulator	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	6.1818e-120
NC_017325.1\|WP_010975503.1\|3678469_3679729_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.38665e-180
NC_017325.1\|WP_003531957.1\|3689362_3691222_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_017325.1\|WP_013844977.1\|3672379_3673849_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	0

>NC_017325.1|WP_010968389.1|3683268_3684123_+|C40-family-peptidase
MPEVLDRRLNAYREDIAEARLRGLVEAKRFVEGTPAAVSVPVTPLRARPEAGCGTDTELLYGETVRVLDVADGWAWVRSDLDGYVGYVPENVVQPPQAPATHLVAVPRTFVYRGADLRFPQAFALSMGSRIAVVGEAETRGTRYFLLDGGLAIVADHCIPAAGALTEDYVAIAARFLETPYLWGGRSGFGIDCSGLVQLAMQMAGRNAPRDSDMQASGLGRAIEREELTRGDLVFWKGHVAIMEDEKTLLHANGHTMTVAREGLEDAIRRIGWLYAQPTGYRRP
>NC_017325.1|WP_003537743.1|3682915_3683260_+|winged-helix-turn-helix-transcriptional-regulator
MPVELTPSQALGLWHAVSLEQVRVDSRDLTLRQMAILLQIYLVPPPHTVRGLAASLGVTKPVITRALDTMGALGLVDRIRDERDRRNVIIKRTVEGALYLEKFGDLIINQGRKM
>NC_017325.1|WP_013844979.1|3681436_3682828_+|leucyl-aminopeptidase
MAPFQFIERQSPFNTSNGKTLPIFAVTPAHIETGSIDPIALDWAKKAGFKAESGAVLLIPSADGHLGGALFGLGANPSDAPFLTGKLARALPAGKWHIETAPLTANRLALGYGLGSYRFERYKSAKTDAPTLLIPADSDATDIKRQLAGVFLARDLINTPTNDMGPEALEAAFRALAAHYKADVSVISGEALLTENFPLVHTVGRASAEAPRLLEMRWGRKGHRKVTLVGKGVCFDTGGLDIKPAASMLLMKKDMGGAANVMGLALMIMDAKLKVDLRVIVPVVENSISANAFRPGDIYKSRKGLTVQIDNTDAEGRLILADALAYADEEKTDLVVDMATLTGAARVALGPDLPPFFTDDDDLARDLAEASLTVDDPVWRMPLYRGYDKDVSARIADLTNAPSGGMAGSITAALFLKRFVTNAKSWVHFDIFGWAQSERPHSPIGGEAQAIRALYHHIGRIAG
>NC_017325.1|WP_010968387.1|3680496_3681306_-|tetratricopeptide-repeat-protein
MTMQDNFSFSLRRLATGVAVAMVALSLSACAGQQGRKELTTGSIPKLTRPVQSMNATELAAAAERIGQAYERNPKDREAGLNYANLLRMTGRNEQALAVMQQVAIYHPADREVLGAYGKAQAAAGQLEQALATISRAQTPDRPDWKLKSAEGAILDQLGRSAEARLRYREALDLKPNEPSVLSNLGMSYLLTKDLRTAETYLKSAASQPDAGSSVRQNLALAVGLQGRFQEAETIAGQELTSEQAEANVAYLRSVLSQQGAWKQLAKAD
>NC_017325.1|WP_010975503.1|3678469_3679729_+|group-II-intron-reverse-transcriptase/maturase
MTSESTTDKPFRIEKRRVYEAYKAVKANRGAAGVDGQTLEIFEKDLAANLYKIWNRMSSGTYFPPPVRAVSIPKKAGGERVLGVPTVSDRIAQMVVKQMIEPDLDSLFLPDSYGYRPGKSALDAVGVTRQRCWKYDWVLEFDIKGLFDNLPHDLLLKAVRKDVKCNWALLYIERWLTAPMEKNGEVIERSRGTPQGGVVSPILANLFLHYAFDLWMTRTHPDLPWCRYADDGLVHCQSEQQAEALKVELSSRLAACGLQMHPTKTKIVYCKDQRRREAYPNVTFDFLGYQFRPRRVANTQRDEFFCGYTPAVSPTALKSMRATIKSLNIPRQTPGTLAEIAKQLNPLLRGWIAYYGRYSRSALSTLADYVNQKLRAWIRRKFKRFQSHKTRASLFLRKLARENPGLFVHWKAFGTNTFT
>NC_017325.1|WP_003537933.1|3676137_3677301_+|IS4-like-element-ISRm16-family-transposase
MRFTPSIFAQLLKAIDRRSFQAIVDRHAGDAYDKCFTSWDHLVALIYAQLSATTSLRGLEASFNANSQHHYHLGSGRLMRSTLSDANRRRPVAVFAETFALLAGQLDRQTRREGTKMLRLIDSTPIPLGKLYDWAKSNGRIRGMKLHVVYDPKADCPGILDITDANVNDAQIGRTITIEKGATYVFDKGYCHYGWWTAIAEAGASFVTRPKTNMGLALVAERPVEQPQGDGFLVLEDSQVSLASKGDSKLPIGLRRVIVKRQDGDTITLLTNDLERSAVEIGQLYKDRWQIELLFRWIKQHLKIRKFLGNNDNAIRLQIFAAMIAYALLRIAARLARVPLPILRFTDLVTQCLFQRKSIAEIHKPPQVNPSRPKPRTIPNQMVFRYA
>NC_017325.1|WP_014529989.1|3674925_3675909_+|type-II-secretion-system-F-family-protein
MAGWIETLTDPNILVAALVSMAVLATFYSLVAPLLERGDLAKRMKSVATEREQIRARERARLNAEATTGRASLRAQHNTSVREIVERLNLRKALVDDNTVNRLKTAGYRSQNALNTFLFARFCLPFLFLTVAVLYIFVLGNFADKPIMVRVSLAIGFAYVGFYAPNIFIANAISKRQQSIRRAWPDALDLLLICVESGVSMELAMRRVADEIAVQSPPLAEELVLTTAELSFLPERRIALENLGLRTGLDEVKSVTQALIQADRYGTPVAQALRVLAQESRDQRMTAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIQVADKF
>NC_017325.1|WP_010968385.1|3673907_3674918_+|type-II-secretion-system-F-family-protein
MFGIDITVLGLAGLVALAAAALAYGVLYPQIETEKKAEGRLRRVSASETDRTKIKAARDRVNEMSKRRKSVQDSLKELEKKQQEKSANTAPSMKKRLLQAGLSISLAQFYLFSALFGLFAFLVVLLAGAGLLIAAGVALIGAAGLPRWIVGSMVKRRCRKFLDEFPNSLDVMVRSIKSGLPLNDALRLIASDGQEPVRTEFRRVVESQQVGLNVPEACARMIHSIPLPEVNFFAIVIAIQAQAGGNLSEALGNLSKVLRERRKMKAKVSALSMEAKASACIIGALPFIVATLVYLTSPDYMMVLFTDPRGHIIMGASAVWMSIGIWVMRNMINFDI
>NC_017325.1|WP_013844977.1|3672379_3673849_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MFGKRGNEGPGKGGARGFSPAPPMPAVQPVPVERSAAPVLGETVAAPSRPQAAAPPQRRRAPRAEDYYDTKSQVFSALIDTIDLSQLSKLDIESAREEIRDIVNDIITIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDIADIMVNGAGQIFIEVGGKVEESEIRFRDNGQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLAIDGTALTIRKFKKDKLTLEQLVRFGSITPEAAVLLQIIGRVRCNIVISGGTGSGKTTLLNCLTRYIDSTERIITCEDSAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIIVGEVRGPEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYTLPARTVREIISGSVDVIIQASRLRDGSRRITHITEVTGMEGDVIITQDLMRYEIDGEDANGRIVGRHVSTGIGRPHFWDRARYFNEDKRLAATLDAMEKQQ
>NC_017325.1|WP_010968383.1|3671031_3672318_+|transcriptional-regulator
MNAIEYTIDSGGTGDWPADGTRPGDLEQLRPLPRISIHAFCESEAVQRLMERCGQDRRMAKVSLRVTGGGIAAAANTFAGASTPNLIILETATEPGALLSELAPLAEVCDPSTRVIVIGRHNDIALYRELIRNGISEYMVAPVGMADMLSAVSAIFVDPEAEPLGRSLAFIGAKGGCGSSVIAHNCAWGISNLFSTETILADLDLPYGTANIDFDQDPPQGIAEAVFAPERLDEVFLDRLLTRCSEHLSLLAAPSMLDRAYDFETGAFQPILEILQRSAPVSVLDLPHGWTDWTRSVLSAADEVVITAAPDLASLRNAKNLLDALKKLRPNDKVPHLVLNQVGVPKRPEIAPDEFCASLEIEAAAIIPFDAVLFGNASNSGRMIAEIDRKSPAAETFAQLSHLLTGRTAIKKARRGGLGKVLAKLGRR
>NC_017325.1|WP_010968390.1|3684359_3685319_-|glyoxylate/hydroxypyruvate-reductase-A
MPAKSPVIVDLKFIPEEVEAALAGAFPGREVIDLADPAHQERDLSGIDYAVVWKSAPDLFSRAPDLKVVFSGGAGVDHVLTLPGLPDVPLVRFVDRTLTTRMSEWVMMQCLLHLRQHRAYEALAKKHEWRDLSQPEAADVTVGIMGMGVLGQDAARKLAAMGFKVIGWSRSKRVIEGVETYDAAGLDAFLGRTDFLVGLLPLTPDTRGIFNAALFAKLSRNGPFGAPVFINAGRGGSQVEADILECLDSGVLGGASLDVFEREPLSPESRFWDMPNVYVTPHVAASSDVRALFVHVEHQIARFESGLPLEHVVDKVAGY
>NC_017325.1|WP_010968391.1|3685329_3686958_-|ABC-transporter-ATP-binding-protein
MTDTLLSVRDLSVAFHQGGETSLAVDRISFDIKRGETVALVGESGSGKSVSANSILKLLPYPAASHPSGEILFNGKDLLKASDDELRHVRGNDVTMIFQEPMTSLNPLHTIEQQIGEILEIHQDLKGAAARARTLELLEQVGIREAEKRLGAYPHQLSGGQRQRVMIAMALANRPELLIADEPTTALDVTVQAQILELLKSLKDEHGMSMLFITHDLGIVRKIADRVCVMTKGKIVETGPTAEIFANPQHAYTRHLLASEPRGEPPPSDASRPIVIEAKDMKVWFPIKAGFLRRVVDHVKAVDGIDLTLRAGQTLGVVGESGSGKTTLGLALTRLISSKGRIAFVGEDIDAYSFREMRPLRNRMQVVFQDPYGSLSPRMSIADIIGEGLKIHEKALTDGERDQRVAAALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPQFVMLDEPTSALDMSVQAQVVDLLRDLQRKHNLAYLFISHDLRVVRALANEVIVMRLGKVVEQGPAERIFEAPTEDYTKALMAAAFNLEAVNLAAVHQ
>NC_017325.1|WP_003531959.1|3686966_3688100_-|ABC-transporter-permease
MSTATAYAGAPEKGWLTPIGRRRWQNFKANRRGYWSLWLFLLLFGLSLFAEFIANDKPILASYKGEILVPVLFDYPEEKFGGFLAETDYRSDFIRDEIGANGWMIWPPIRYSYQTVNSSIPHSAPTPPFWLMSEEERCSAYPQGADDPGCIAGNLNWLGTDDQARDVMARMIYGFRISVLFGLALTIASAVIGVSAGAVQGYFGGWTDLLMQRFIEIWSSMPVLYILLIIAAILPPGFFILLGIMLLFSWVGFVGVVRAEFLRARNFEYVNAARALGVGNGTIMYRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGFGMPPGSPSLGEMIAQGKSNLQAPWLGLTAFFAMSIMLSLLIFVGEATRDAFDPRKTFR
>NC_017325.1|WP_003531958.1|3688099_3689182_-|microcin-C-ABC-transporter-permease-YejB
MGAYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVGGGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDLIIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGILLIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTKNSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYIFSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFERRDV
>NC_017325.1|WP_003531957.1|3689362_3691222_-|ABC-transporter-substrate-binding-protein
MPNFCRTVKPGLAASLLTAALLLLPPASNAEEQPVWHHATSSIGEPKYKDGFARFDYVNPDAPKGGELRLSESGTFDSFNPILAKGEVATGVSSLVFETLLKSAEDEITTSYGLLAEGISYPDDISSATFRLRAEAKWADGKPVTPEDVVFSFDMVKEHNPLFSNYYRHVISAEKTGERDVTFRFDEKNNHELPNILGQFPILPKHWWEGQDAKGSKRDISRTTLEPVMGSGPYKIASFQAGGSIRFELRDDYWGKDLNVNVGRYNFRTINYAFFSDRSVQFEAFRAGNVDFYQDNSASHWATAYDFPAMKDGRVIREEIENPLRATGIMQAFVPNMRREKFKDQRVRQALNYAFDFEDLNRSLAHNAFQRVDSYFWGTELASSGLPEGREKEILEELKDKVPAAVFTTPYKNPVNGDPQKVRDNLRKALALFKEAGYELKGSRLVNAKTGEPFSFEILLSNPTFERTVTPFVNSVRKIGIDARIRTVDDSQYTNRVRSYDYDMIYGIWAQTLVPGNEQSDYWGSASVNQPGSRNYAGIADPAIDELIRRIVFAPNREELVATTRALDRVLLAHHYVVPLFYSKALRVAYWNHLARPKELPYYGMDFPDAWWSKNTAAK
>NC_017325.1|WP_010968392.1|3691513_3692581_+|penicillin-insensitive-murein-endopeptidase
MKFDARAALRRCGSTVLALIMGVSLVSAEAAANDAPPAKELFGAKDLPMQAAPASFGFYSKGCLAGGVAIPTDGPTWQAMRLSRNRRWGHPAMIALIERFSHDAVEKIGWPGLLLGDISQPRGGPMLSGHASHQIGLDADIWLTPMPQRTLSYQERETISATSMLDKSKFLTVDPSIWTPSHARLIMMAASYPQVERVFVNPAIKKKLCDTWRGDRAALGKVRPIYGHDYHFHIRIKCPPGSKGCKDQAVVPAGDGCDKSLAWWFTDEPWAKPKQKPGAKPPKPKFAKLADLPKACALVLNGPAPASEQEATYGTAYRAPAAIPAAATSIEAVIEAAGEAPLANIPVPSPRPGLQ
>NC_017325.1|WP_003531955.1|3692701_3693082_+|methylglyoxal-synthase
MADRKCLALIAHDQKKDDLAAFAKANEAVLSKWKIVATGTTGGRVLDVCPALDIVRLKSGPLGGDQQIGALIATGDVDCLIFFVDPLTAMPHDVDVKALMRLAIVYDIPMALNRATAEQLIDFRRN
>NC_017325.1|WP_013844980.1|3693143_3694163_+|glucokinase
MPNASEHSFPFPILIGDIGGTNARFALLTDAYGEPKQLAPIRTGDFATIEEAMQKGILDKTSVQPRSAILAVAGPIKGDEIPLTNAGWVIRPKDMLASLGLEDVLVINDFEAQALAIAAPADQDVVQIGGGAVRPFHSRVVLGPGTGLGVAGLVYAQHTWIPVPGEGGHVDIGPRTERDFRIWPFLEPIEGRMAGEQILCGRGIMNLYRAVCAANGEEAVLADQAAVTTSALSGADAAAVETVSLFATYLGRVAGDMALIFMARGGVFLAGGISQKILPALTKPEFRAAFEDKAPHSALMRTIPTFAVIHPMAALSGLAAFARTPRDFGVAMEGRRWRR
>NC_017325.1|WP_010968394.1|3694271_3696077_+|ABC-transporter-ATP-binding-protein
MNAKDRNKRAVDSETITGILKRVIAENGRDHIRGYAFAIACLVVVAATTGFTAWIMEAVVNEAFANRRADIVLLICGAIFAAFVLRGLATYGQAVALSKIGNNIVARYQRRLYAHLMALSVGYFHEHRSAQLAAKVSQNVSGIRDVLNMTVTSIARDLLTLIGLVVVMFSKDWLLSLIVFFVAPPLLLGLRYISRRLRLATREAVEVNSRVLGAMQETIQGITIVKAFTMENELRRKVESIIDRAENRANRIARLSERTAPMTETFAGLAISSVLAYAAFRTIYHNVPPGAFFAFVTALLMAYDPARRLARLQVSMERAAVNARMIYEILDTVPHQRDRPDATELRLGEATVELRDVRFAYGTGEEILKGVSFRAEGGKTTALVGPSGAGKSTIISLIPRFYDPLSGEILIDGQNIAGVTKQSLRAGLAYVSQQPYLFEGSIRDNIRYGRPDATDAEIEEAARLAYAHDFILAQPQGYDTPVGEHGVTLSGGQRQRLSIARALVRNAPVLLLDEATSALDTESEAAVQKALEEAMSGRTVIVIAHRLSTVVNADKIVVMKEGIVVEEGSHEELARRPDGLYARLHNLQGSGADTVAEAQIL
>NC_017325.1|WP_010968395.1|3696094_3696913_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNETDMKLVVVGAAGRMGQTLIRIIHETAGVRLHAAIERTGSPFIGRDAGELAGAGPMGVAVTDKPLEAFVEAEGVLDFTAPAATVEFAGLAAQARIVHVVGTTGCSADDEARIRAAARHARVIKSGNMSLGVNLLGVLTEKAARALPAGGWDIEILEMHHKHKVDAPSGTALLLGEAAARGRGIDLADHSVRVRDGHTGARPEGSIGFATLRGGSVIGEHSVVIAGEGEMVTLSHSATDRSIFARGAVAAALWGRSRKPGFYSMLDVLGLD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017325_1	1.1\|734833\|38\|NC_017325\|CRISPRCasFinder	734833-734870	38	NZ_CP015741	Shinella sp. HZN7 plasmid pShin-05, complete sequence	7231-7268	4	0.895
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021821	Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence	97030-97058	4	0.862
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	1132537-1132565	4	0.862
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	437980-438008	4	0.862
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	673583-673611	4	0.862
NC_017325_1	1.1\|734833\|38\|NC_017325\|CRISPRCasFinder	734833-734870	38	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	250765-250802	5	0.868
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021827	Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence	29583-29611	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021827	Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence	233908-233936	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021821	Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence	293861-293889	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	933932-933960	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	480867-480895	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	155418-155446	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	472426-472454	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	269088-269116	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	506803-506831	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	313158-313186	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	1304182-1304210	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	38576-38604	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	775930-775958	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	35045-35073	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	4927-4955	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1508268-1508296	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	35681-35709	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	591831-591859	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021217	Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence	1248621-1248649	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	2287-2315	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	1081431-1081459	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	1302519-1302547	5	0.828
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	35474-35502	5	0.828
NC_017325_1	1.1\|734833\|38\|NC_017325\|CRISPRCasFinder	734833-734870	38	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1691497-1691534	6	0.842
NC_017325_1	1.1\|734833\|38\|NC_017325\|CRISPRCasFinder	734833-734870	38	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	126743-126780	6	0.842
NC_017325_1	1.1\|734833\|38\|NC_017325\|CRISPRCasFinder	734833-734870	38	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	188971-189008	6	0.842
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	630096-630124	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	1273441-1273469	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	143417-143445	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_017327	Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence	1488498-1488526	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	580595-580623	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	1323600-1323628	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1240000-1240028	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	1331029-1331057	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_018683	Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence	1417421-1417449	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP021809	Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence	769758-769786	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	172401-172429	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	136287-136315	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	143082-143110	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	430636-430664	6	0.793
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	788311-788339	6	0.793
NC_017325_1	1.1\|734833\|38\|NC_017325\|CRISPRCasFinder	734833-734870	38	NZ_CP024308	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence	99915-99952	8	0.789
NC_017325_1	1.1\|734833\|38\|NC_017325\|CRISPRCasFinder	734833-734870	38	NZ_CP013632	Rhizobium sp. N324 plasmid pRspN324b, complete sequence	155054-155091	9	0.763
NC_017325_3	3.1\|2845567\|29\|NC_017325\|CRISPRCasFinder	2845567-2845595	29	AP021851	Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome	159083-159111	9	0.69

1. spacer 1.1|734833|38|NC_017325|CRISPRCasFinder matches to NZ_CP015741 (Shinella sp. HZN7 plasmid pShin-05, complete sequence) position: , mismatch: 4, identity: 0.895

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgaatttt	Protospacer
** ******** *********************** *.

2. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021821 (Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence) position: , mismatch: 4, identity: 0.862

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccggacggaaaa	Protospacer
 .* **.**********************

3. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 4, identity: 0.862

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccggacggaaaa	Protospacer
 .* **.**********************

4. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 4, identity: 0.862

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccggacggaaaa	Protospacer
 .* **.**********************

5. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 4, identity: 0.862

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccggacggaaaa	Protospacer
 .* **.**********************

6. spacer 1.1|734833|38|NC_017325|CRISPRCasFinder matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 5, identity: 0.868

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaagggccggtctatccgaatatgtgatcatc	Protospacer
** ***********************.****** ..**

7. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggacggaaaa	Protospacer
 .. **.**********************

8. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

9. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021821 (Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggacggaaaa	Protospacer
 .. **.**********************

10. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggacggaaaa	Protospacer
 .. **.**********************

11. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggacggaaaa	Protospacer
 .. **.**********************

12. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggacggaaaa	Protospacer
 .. **.**********************

13. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggacggaaaa	Protospacer
 .. **.**********************

14. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

15. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggacggaaaa	Protospacer
 .. **.**********************

16. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

17. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

18. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

19. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

20. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

21. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

22. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

23. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

24. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

25. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021217 (Sinorhizobium meliloti RU11/001 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

26. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

27. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

28. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

29. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 5, identity: 0.828

acccttctgccgcaactccggacggaaaa	CRISPR spacer
ttcattttgccgcaactccgcacggaaaa	Protospacer
 .* **.************* ********

30. spacer 1.1|734833|38|NC_017325|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgacgtcc	Protospacer
** ******** *********************   .*

31. spacer 1.1|734833|38|NC_017325|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaaggcccggtctatccgaacatgtgagttcg	Protospacer
** ******** *********************.* .

32. spacer 1.1|734833|38|NC_017325|CRISPRCasFinder matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 6, identity: 0.842

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaagggccggtctatccgaatatgtaaccgac	Protospacer
** ***********************.****.* .* *

33. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

34. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggacgggaaa	Protospacer
 .. **.******************.***

35. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

36. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_017327 (Sinorhizobium meliloti SM11 plasmid pSmeSM11c, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

37. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

38. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

39. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021801 (Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

40. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

41. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

42. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

43. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

44. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

45. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

46. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaactccggatggaaaa	Protospacer
 .. **.***************.******

47. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 6, identity: 0.793

acccttctgccgcaactccggacggaaaa	CRISPR spacer
tttgttttgccgcaattccggacggaaaa	Protospacer
 .. **.********.*************

48. spacer 1.1|734833|38|NC_017325|CRISPRCasFinder matches to NZ_CP024308 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3a, complete sequence) position: , mismatch: 8, identity: 0.789

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
gggggcgaaggcccggtctatccgaacatgtagcccga	Protospacer
*********** *******************.. .

49. spacer 1.1|734833|38|NC_017325|CRISPRCasFinder matches to NZ_CP013632 (Rhizobium sp. N324 plasmid pRspN324b, complete sequence) position: , mismatch: 9, identity: 0.763

gggggcgaagggccggtctatccgaacatgtgaatgtc	CRISPR spacer
ggcggcgaggggccggtctatccgaacatgtagggcag	Protospacer
** *****.**********************...

50. spacer 3.1|2845567|29|NC_017325|CRISPRCasFinder matches to AP021851 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome) position: , mismatch: 9, identity: 0.69

acccttctgccgcaactccggacggaaaa	CRISPR spacer
gagtttctgccgcaactccgaacgggccg	Protospacer
.  .****************.****.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

880662 : 937256

Vibrio_phage(10.0%)

transposase,tRNA,tail,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969865.1\|880662_881004_+\|tRNA	tRNA-binding protein	NA	NA	NA	NA
WP_003532899.1\|881016_882399_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	8.8e-05	22.9
WP_003532900.1\|882433_883138_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-37	38.2
WP_017263267.1\|883438_883954_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_010969864.1\|884107_884374_-	hypothetical protein	NA	NA	NA	NA
WP_013844741.1\|884699_885329_-	DUF1236 domain-containing protein	NA	NA	NA	NA
WP_003532904.1\|885549_885705_+	hypothetical protein	NA	NA	NA	NA
WP_003532905.1\|885814_886456_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	7.2e-18	30.5
WP_003532907.1\|886526_886952_-	BA14K family protein	NA	NA	NA	NA
WP_003532915.1\|887095_887311_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	9.1e-10	50.0
WP_010969863.1\|887980_888883_-	DMT family transporter	NA	NA	NA	NA
WP_010969862.1\|889071_890262_-	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
WP_003532922.1\|890387_890669_-	hypothetical protein	NA	NA	NA	NA
WP_003532924.1\|890661_890859_-	hypothetical protein	NA	NA	NA	NA
WP_010969860.1\|891256_892459_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_013844739.1\|892579_893446_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014529157.1\|893470_894232_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003532933.1\|894344_895235_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010969856.1\|895273_896479_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	6.7e-41	32.9
WP_003532937.1\|896804_897254_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	3.0e-15	38.4
WP_010969855.1\|897487_899491_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.5e-87	41.5
WP_010969854.1\|899536_901447_+	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.1e-74	35.7
WP_010969853.1\|901706_902894_+	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	9.2e-35	27.8
WP_013844736.1\|902916_903951_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.1e-15	68.6
WP_003532953.1\|904383_906438_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-35	33.6
WP_003532955.1\|906659_906950_+	GYD domain-containing protein	NA	NA	NA	NA
WP_003537532.1\|907318_907888_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_003537534.1\|907989_908343_+	DUF1428 domain-containing protein	NA	NA	NA	NA
WP_010969728.1\|908697_909774_+\|transposase	ISAs1-like element ISRm21 family transposase	NA	NA	NA	NA
WP_003537547.1\|910163_910568_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_003537549.1\|910824_911181_+	hypothetical protein	NA	NA	NA	NA
WP_003537551.1\|911268_912057_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_014529161.1\|912389_912809_-	hypothetical protein	NA	NA	NA	NA
WP_017271689.1\|913650_913881_-	hypothetical protein	NA	NA	NA	NA
WP_014529163.1\|913877_914144_-	hypothetical protein	NA	NA	NA	NA
WP_014529164.1\|914162_915731_-	hypothetical protein	NA	NA	NA	NA
WP_014529165.1\|915741_916239_-	hypothetical protein	Q8W6L2	Sinorhizobium_phage	1.8e-29	45.5
WP_014529166.1\|916238_917393_-	hypothetical protein	A0A1Y0SVH2	Sinorhizobium_phage	1.6e-31	57.9
WP_014529167.1\|917407_920581_-	host specificity protein J	Q3HQU5	Burkholderia_phage	6.7e-133	37.2
WP_014529168.1\|920577_921315_-\|tail	tail assembly protein	A0A1B1IV58	uncultured_Mediterranean_phage	4.1e-09	25.9
WP_017271691.1\|921311_922064_-	C40 family peptidase	F1C573	Cronobacter_phage	8.1e-29	34.5
WP_014529170.1\|922069_922765_-\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	2.4e-43	42.3
WP_014529171.1\|922761_923145_-\|tail	phage tail protein	K7P7R1	Enterobacteria_phage	4.4e-07	31.3
WP_014529172.1\|923144_925334_-	hypothetical protein	NA	NA	NA	NA
WP_014529173.1\|925343_925790_-	phage protein, HK97 gp10 family	NA	NA	NA	NA
WP_020479474.1\|925789_925996_-	hypothetical protein	NA	NA	NA	NA
WP_014529174.1\|925949_926402_-	hypothetical protein	NA	NA	NA	NA
WP_017271694.1\|926411_927071_-	hypothetical protein	NA	NA	NA	NA
WP_014529176.1\|927365_929159_+	AAA family ATPase	NA	NA	NA	NA
WP_014529177.1\|929172_930996_+	ATP-dependent helicase	NA	NA	NA	NA
WP_017271695.1\|931019_931406_-	hypothetical protein	NA	NA	NA	NA
WP_017271696.1\|931402_931579_-	hypothetical protein	NA	NA	NA	NA
WP_014529179.1\|931607_931994_-	hypothetical protein	NA	NA	NA	NA
WP_017271698.1\|931990_932329_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_017271699.1\|932325_933045_-	glycoside hydrolase family 25 protein	I3VYU7	Thermoanaerobacterium_phage	1.1e-06	27.5
WP_014529181.1\|933026_933578_-	hypothetical protein	NA	NA	NA	NA
WP_014529182.1\|933581_934700_-	hypothetical protein	NA	NA	NA	NA
WP_014529183.1\|934696_935860_-	collagen-like protein	NA	NA	NA	NA
WP_014529184.1\|935837_937256_-\|portal	phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	4.5e-12	23.6

DBSCAN-SWA_2

1066887 : 1124668

Paracoccus_phage(29.41%)

integrase,terminase,transposase,capsid,protease,tail,head,portal

attL 1069971:1069985|attR 1086311:1086325

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014529253.1\|1066887_1068063_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	5.6e-77	41.2
WP_013844649.1\|1068216_1070427_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
1069971:1069985	attL	NA	NA	NA	NA
WP_010969781.1\|1070578_1071463_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013844648.1\|1071688_1072162_-	6,7-dimethyl-8-ribityllumazine synthase	NA	NA	NA	NA
WP_010969779.1\|1072531_1073593_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	34.8
WP_010969778.1\|1073597_1074386_-	ABC transporter permease	NA	NA	NA	NA
WP_003529194.1\|1074382_1075264_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_003529193.1\|1075341_1076445_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003529191.1\|1076630_1077509_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_010969776.1\|1077679_1078453_+	N-formylglutamate amidohydrolase	NA	NA	NA	NA
WP_003529187.1\|1078561_1080109_+	amino acid permease	NA	NA	NA	NA
WP_010969775.1\|1080201_1081566_+	glutamine synthetase	NA	NA	NA	NA
WP_010969774.1\|1081763_1083149_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_010969773.1\|1083145_1084291_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_017266410.1\|1084495_1085659_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_014529256.1\|1085642_1085879_-	hypothetical protein	NA	NA	NA	NA
WP_014529257.1\|1085865_1086129_-	BrnT family toxin	K4NX81	Burkholderia_phage	2.8e-05	34.1
WP_014529258.1\|1086194_1086443_-	hypothetical protein	A0A291AUJ1	Sinorhizobium_phage	9.2e-14	57.8
1086311:1086325	attR	NA	NA	NA	NA
WP_014529259.1\|1086439_1086637_-	hypothetical protein	NA	NA	NA	NA
WP_017272640.1\|1086633_1086903_-	hypothetical protein	NA	NA	NA	NA
WP_014529261.1\|1086877_1087669_-	hypothetical protein	NA	NA	NA	NA
WP_014529262.1\|1087665_1087836_-	hypothetical protein	NA	NA	NA	NA
WP_014529263.1\|1087832_1088345_-	hypothetical protein	NA	NA	NA	NA
WP_014529264.1\|1088408_1089359_-	recombinase RecT	A0A0H5BBT9	Pseudomonas_phage	5.4e-38	44.8
WP_014529265.1\|1089355_1090357_-	hypothetical protein	NA	NA	NA	NA
WP_014529266.1\|1090540_1090984_-	hypothetical protein	NA	NA	NA	NA
WP_017272641.1\|1091000_1091468_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014529268.1\|1091599_1091848_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014529269.1\|1091985_1092570_+	hypothetical protein	NA	NA	NA	NA
WP_014529270.1\|1092582_1093029_+	global cell cycle regulator GcrA	NA	NA	NA	NA
WP_014529271.1\|1093021_1093576_+	hypothetical protein	A0A2D2W1W1	Sinorhizobium_phage	1.0e-36	46.0
WP_014529272.1\|1093572_1094238_+	hypothetical protein	NA	NA	NA	NA
WP_017272643.1\|1094260_1094611_+	hypothetical protein	NA	NA	NA	NA
WP_014529274.1\|1094613_1095198_+	hypothetical protein	NA	NA	NA	NA
WP_017272644.1\|1095194_1095755_+	hypothetical protein	NA	NA	NA	NA
WP_014529276.1\|1097046_1097631_+	hypothetical protein	NA	NA	NA	NA
WP_020479366.1\|1097768_1098023_+	hypothetical protein	NA	NA	NA	NA
WP_017266952.1\|1098278_1098446_-	hypothetical protein	NA	NA	NA	NA
WP_014529278.1\|1098575_1100396_+	hypothetical protein	NA	NA	NA	NA
WP_014529279.1\|1100783_1101761_-	hypothetical protein	NA	NA	NA	NA
WP_014529280.1\|1101837_1102713_-	hypothetical protein	NA	NA	NA	NA
WP_014529281.1\|1103162_1103339_+	hypothetical protein	NA	NA	NA	NA
WP_017266399.1\|1104398_1104656_+	helix-turn-helix transcriptional regulator	J7FAF1	Agrobacterium_phage	1.5e-11	50.0
WP_014529284.1\|1104907_1105420_+	hypothetical protein	NA	NA	NA	NA
WP_014529285.1\|1105457_1106597_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_017265736.1\|1107739_1108369_-	hypothetical protein	NA	NA	NA	NA
WP_017265737.1\|1108365_1108830_-	hypothetical protein	NA	NA	NA	NA
WP_014529287.1\|1109153_1109537_-	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_017272372.1\|1110097_1110439_+	hypothetical protein	NA	NA	NA	NA
WP_014529290.1\|1110435_1112124_+\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	2.3e-132	45.6
WP_014529291.1\|1112120_1113368_+\|portal	phage portal protein	A0A0U2BXP2	Paracoccus_phage	5.9e-125	59.5
WP_014529292.1\|1113364_1114060_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	9.4e-56	50.2
WP_014529293.1\|1114090_1115296_+\|capsid	phage major capsid protein	A0A0U2C0U7	Paracoccus_phage	2.2e-129	64.1
WP_014529294.1\|1115353_1115749_+	hypothetical protein	NA	NA	NA	NA
WP_014529295.1\|1115751_1116333_+	hypothetical protein	NA	NA	NA	NA
WP_020479543.1\|1116332_1116668_+\|head	phage head closure protein	NA	NA	NA	NA
WP_014529297.1\|1116667_1117144_+	HK97 gp10 family phage protein	A0A0U2C0P4	Paracoccus_phage	3.1e-26	45.1
WP_014529298.1\|1117151_1117535_+	hypothetical protein	NA	NA	NA	NA
WP_013844689.1\|1117557_1117989_+\|tail	tail protein	NA	NA	NA	NA
WP_013844688.1\|1117991_1118357_+	gene transfer agent family protein	NA	NA	NA	NA
WP_014529299.1\|1118651_1120586_+\|tail	phage tail tape measure protein	A0A0U2BXT9	Paracoccus_phage	2.6e-55	51.6
WP_014529300.1\|1120588_1121269_+	hypothetical protein	A0A141GEX3	Brucella_phage	9.2e-48	47.6
WP_014529301.1\|1121268_1121862_+	hypothetical protein	A0A141GEX4	Brucella_phage	7.7e-67	59.0
WP_014529302.1\|1121861_1122260_+	hypothetical protein	A0A141GEY4	Brucella_phage	3.2e-32	47.3
WP_014529303.1\|1122244_1124668_+	hypothetical protein	A0A141GEY5	Brucella_phage	2.7e-190	60.5

DBSCAN-SWA_3

1453812 : 1501326

Sinorhizobium_phage(86.11%)

capsid,tail,integrase,portal

attL 1453058:1453080|attR 1501482:1501504

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1453058:1453080	attL	NA	NA	NA	NA
WP_014529381.1\|1453812_1454346_-	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	6.1e-31	46.5
WP_014529382.1\|1454342_1454711_-	DUF4326 domain-containing protein	A0A0A8IN79	Aurantimonas_phage	4.5e-17	45.2
WP_014529383.1\|1454707_1455316_-	hypothetical protein	NA	NA	NA	NA
WP_041862273.1\|1456624_1456870_-	hypothetical protein	NA	NA	NA	NA
WP_014529386.1\|1456866_1457040_-	hypothetical protein	A0A291AUK2	Sinorhizobium_phage	5.1e-11	62.5
WP_014529387.1\|1457154_1457388_-	hypothetical protein	NA	NA	NA	NA
WP_014529388.1\|1457480_1457663_-	hypothetical protein	NA	NA	NA	NA
WP_014529389.1\|1457817_1458051_+	hypothetical protein	A0A291AUS0	Sinorhizobium_phage	2.7e-23	68.4
WP_014529390.1\|1458040_1458340_+	hypothetical protein	A0A291AUR7	Sinorhizobium_phage	1.6e-28	58.3
WP_041862274.1\|1458336_1459155_-	helix-turn-helix transcriptional regulator	A0A291AUR9	Sinorhizobium_phage	1.9e-119	78.4
WP_014529392.1\|1459126_1459381_+	hypothetical protein	A0A291AUR8	Sinorhizobium_phage	2.0e-24	71.1
WP_014529393.1\|1459599_1460052_+	hypothetical protein	NA	NA	NA	NA
WP_014529394.1\|1460051_1460273_+	hypothetical protein	NA	NA	NA	NA
WP_014529395.1\|1460272_1460521_+	hypothetical protein	NA	NA	NA	NA
WP_014529396.1\|1460517_1460670_+	hypothetical protein	NA	NA	NA	NA
WP_014529397.1\|1460741_1461476_+	hypothetical protein	NA	NA	NA	NA
WP_014529398.1\|1461475_1461835_+	winged helix-turn-helix domain-containing protein	A0A0B5A598	Paracoccus_phage	3.9e-13	47.0
WP_014529399.1\|1461831_1463721_+	ParB N-terminal domain-containing protein	M4MB46	Vibrio_phage	3.1e-16	28.3
WP_041862275.1\|1463717_1463915_+	hypothetical protein	NA	NA	NA	NA
WP_014529401.1\|1463911_1464226_+	hypothetical protein	A0A291AUT2	Sinorhizobium_phage	3.1e-22	62.6
WP_014529402.1\|1464209_1464416_+	hypothetical protein	NA	NA	NA	NA
WP_041862276.1\|1464412_1465714_+	helix-turn-helix domain-containing protein	A0A068CE61	Rhizobium_phage	1.6e-77	43.3
WP_014529404.1\|1465697_1466342_+	transcription antitermination protein NusG	A0A291AUL3	Sinorhizobium_phage	6.9e-77	67.3
WP_014529405.1\|1466574_1467321_+	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	2.5e-115	83.9
WP_014529406.1\|1467470_1468112_+	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	1.6e-54	59.1
WP_014529409.1\|1470162_1472121_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	2.0e-289	84.1
WP_014529410.1\|1472117_1473023_+	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	1.6e-143	84.8
WP_014529411.1\|1473048_1473591_+	hypothetical protein	A0A291AUL6	Sinorhizobium_phage	2.1e-39	78.0
WP_014529413.1\|1473976_1475008_+\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	3.4e-179	87.1
WP_014529414.1\|1475085_1475490_+	hypothetical protein	A0A291AUM1	Sinorhizobium_phage	2.3e-14	55.7
WP_014529415.1\|1475486_1475813_+	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	3.6e-34	70.8
WP_014529416.1\|1475815_1476112_+	hypothetical protein	A0A291AUM3	Sinorhizobium_phage	3.0e-27	62.9
WP_014529417.1\|1476113_1476578_+	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	3.2e-52	68.2
WP_011975792.1\|1476670_1477081_+\|tail	tail protein	A0A291AUM5	Sinorhizobium_phage	3.7e-52	76.5
WP_014529418.1\|1477093_1477495_+	hypothetical protein	A0A291AUM7	Sinorhizobium_phage	1.3e-49	77.7
WP_014529419.1\|1477542_1477734_+	hypothetical protein	A0A291AUN4	Sinorhizobium_phage	1.5e-19	74.2
WP_014529420.1\|1477749_1477914_-	hypothetical protein	NA	NA	NA	NA
WP_014529421.1\|1478007_1479879_+	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	7.6e-185	59.7
WP_014529422.1\|1479878_1480529_+	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	5.1e-80	70.0
WP_014529423.1\|1480525_1481116_+	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	5.9e-75	71.1
WP_011976009.1\|1481248_1481521_-	hypothetical protein	NA	NA	NA	NA
WP_014529424.1\|1481590_1481995_+	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	1.4e-48	73.1
WP_014529425.1\|1482001_1484755_+\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	4.4e-258	61.5
WP_014529426.1\|1484754_1486269_+	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	2.7e-265	87.8
WP_014529427.1\|1486280_1488305_+\|tail	tail fiber domain-containing protein	A0A2L2R219	Sinorhizobium_phage	4.7e-55	31.1
WP_014529428.1\|1488840_1489032_-	hypothetical protein	NA	NA	NA	NA
WP_014529430.1\|1489642_1490611_+	chitinase	A0A076G6J8	Sinorhizobium_phage	1.2e-165	87.7
WP_080567520.1\|1490610_1490895_+	hypothetical protein	A0A076G8H8	Sinorhizobium_phage	3.5e-25	59.6
WP_014529432.1\|1491098_1491464_+	hypothetical protein	A0A076GD39	Sinorhizobium_phage	2.4e-42	72.5
WP_014529434.1\|1492311_1492491_+	hypothetical protein	NA	NA	NA	NA
WP_014529435.1\|1492678_1493845_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_014529436.1\|1494172_1494910_-	NPP1 family protein	NA	NA	NA	NA
WP_014529437.1\|1495194_1495557_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_014529438.1\|1496562_1497225_+	hypothetical protein	NA	NA	NA	NA
WP_014529439.1\|1497287_1498238_+	S8/S53 family peptidase	NA	NA	NA	NA
WP_014529440.1\|1498939_1499449_+	nucleoside kinase	NA	NA	NA	NA
WP_014529441.1\|1500240_1501326_-\|integrase	site-specific integrase	I6NSG1	Burkholderia_phage	6.3e-115	58.7
1501482:1501504	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1799048 : 1825764

Sinorhizobium_phage(41.67%)

terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014529511.1\|1799048_1799414_-	hypothetical protein	Q8W6F3	Sinorhizobium_phage	6.7e-45	71.7
WP_014529512.1\|1799410_1800088_-	hypothetical protein	NA	NA	NA	NA
WP_014529513.1\|1800084_1800291_-	hypothetical protein	NA	NA	NA	NA
WP_014529514.1\|1800287_1800743_-	hypothetical protein	NA	NA	NA	NA
WP_014529515.1\|1800739_1801201_-	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	5.5e-20	43.8
WP_014529516.1\|1801204_1801852_-	hypothetical protein	NA	NA	NA	NA
WP_014529517.1\|1801851_1802757_-	ATP-binding protein	Q7Y5X1	Haemophilus_phage	2.3e-62	44.9
WP_014529518.1\|1802747_1802996_-	hypothetical protein	NA	NA	NA	NA
WP_020479514.1\|1802992_1803364_-	hypothetical protein	NA	NA	NA	NA
WP_017272177.1\|1803798_1804158_+	hypothetical protein	NA	NA	NA	NA
WP_017272178.1\|1804160_1804961_-	LexA family transcriptional regulator	A0A291AUK0	Sinorhizobium_phage	2.2e-101	67.8
WP_017272179.1\|1805055_1805289_+	hypothetical protein	A0A291AUJ6	Sinorhizobium_phage	4.6e-15	53.2
WP_014529521.1\|1805294_1805543_-	hypothetical protein	NA	NA	NA	NA
WP_017272665.1\|1805629_1805917_+	hypothetical protein	A0A172Q0P4	Acinetobacter_phage	3.2e-18	57.9
WP_014529522.1\|1805917_1806526_+	HNH endonuclease	A0A1X9SFK6	Acinetobacter_phage	1.4e-23	39.8
WP_014529523.1\|1806526_1807225_+	hypothetical protein	NA	NA	NA	NA
WP_017272666.1\|1807236_1807374_-	hypothetical protein	NA	NA	NA	NA
WP_017272667.1\|1807797_1808235_+	hypothetical protein	NA	NA	NA	NA
WP_014529527.1\|1808650_1808836_+	hypothetical protein	NA	NA	NA	NA
WP_014529528.1\|1808832_1809036_+	hypothetical protein	A0A076G6Y4	Sinorhizobium_phage	8.0e-24	77.6
WP_014529529.1\|1809032_1809401_+	phage endonuclease	NA	NA	NA	NA
WP_017272668.1\|1809724_1810123_+	hypothetical protein	M9Q2G6	Clostridium_phage	8.4e-09	41.9
WP_014529531.1\|1810172_1810709_+	hypothetical protein	NA	NA	NA	NA
WP_014529532.1\|1810705_1811512_+	hypothetical protein	A0A291LAU4	Bordetella_phage	2.2e-32	45.7
WP_014529533.1\|1811508_1811940_+	GcrA cell cycle regulator	NA	NA	NA	NA
WP_014529534.1\|1811936_1812554_+	hypothetical protein	A0A076G6H3	Sinorhizobium_phage	4.0e-34	39.4
WP_014529535.1\|1812694_1812946_-	acyl carrier protein	NA	NA	NA	NA
WP_014529536.1\|1813292_1813973_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_017271928.1\|1814073_1814349_-	hypothetical protein	NA	NA	NA	NA
WP_014529537.1\|1814371_1814872_+\|terminase	terminase small subunit	A0A076GD11	Sinorhizobium_phage	3.2e-29	44.4
WP_014529538.1\|1814875_1816207_+	DNA-packaging protein	Q1WDG8	Streptomyces_phage	1.7e-37	34.4
WP_014529539.1\|1816215_1817565_+	DUF1073 domain-containing protein	L7TRA1	Rhizobium_phage	1.5e-129	52.1
WP_017272715.1\|1817561_1818038_-	hypothetical protein	NA	NA	NA	NA
WP_014529541.1\|1818135_1819281_+	DUF2213 domain-containing protein	A0A2R3UA67	Siphoviridae_environmental_samples	2.5e-82	47.6
WP_014529542.1\|1819293_1819764_+	hypothetical protein	A0A2H4J1G1	uncultured_Caudovirales_phage	7.8e-38	62.2
WP_014529543.1\|1819788_1820757_+	DUF2184 domain-containing protein	A0A2H4J526	uncultured_Caudovirales_phage	3.5e-141	76.3
WP_014529544.1\|1820771_1821113_+	hypothetical protein	A0A2H4J908	uncultured_Caudovirales_phage	3.0e-07	47.5
WP_014529545.1\|1821165_1821660_+	hypothetical protein	A0A076G6I4	Sinorhizobium_phage	3.0e-24	46.5
WP_014529546.1\|1821669_1821831_-	hypothetical protein	NA	NA	NA	NA
WP_014529547.1\|1821909_1822275_+	hypothetical protein	A0A076G8G5	Sinorhizobium_phage	1.0e-45	76.7
WP_014529548.1\|1822271_1822415_-	hypothetical protein	NA	NA	NA	NA
WP_014529549.1\|1822573_1823083_-	lipocalin family protein	A0A1W6JNX6	Morganella_phage	3.6e-20	38.2
WP_014529550.1\|1823161_1824199_+\|head	head morphogenesis protein	A0A076G6I6	Sinorhizobium_phage	2.6e-78	50.6
WP_014529551.1\|1824198_1824645_+	hypothetical protein	A0A076G8G8	Sinorhizobium_phage	1.2e-16	37.8
WP_014529552.1\|1824851_1825277_+	hypothetical protein	NA	NA	NA	NA
WP_014529553.1\|1825278_1825764_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	3.2e-10	30.9

DBSCAN-SWA_5

1831968 : 1900116

Sinorhizobium_phage(83.67%)

terminase,tRNA,transposase,capsid,tail,head,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014529564.1\|1831968_1834716_+\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	1.2e-260	61.6
WP_014529567.1\|1836228_1836627_+	hypothetical protein	A0A291AUN5	Sinorhizobium_phage	1.5e-26	63.6
WP_014531024.1\|1836753_1838283_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.7e-119	43.9
WP_012477343.1\|1838295_1839033_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-57	47.5
WP_014529569.1\|1839966_1840314_+	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.4e-23	50.0
WP_014529570.1\|1840300_1840636_+	hypothetical protein	A0A291AUN7	Sinorhizobium_phage	1.7e-26	70.8
WP_014529571.1\|1841073_1842042_+	chitinase	A0A076G6J8	Sinorhizobium_phage	8.2e-167	88.6
WP_014529572.1\|1842041_1842401_+	hypothetical protein	NA	NA	NA	NA
WP_014529573.1\|1842465_1842828_+	hypothetical protein	A0A076GD39	Sinorhizobium_phage	5.2e-42	71.4
WP_014529575.1\|1843452_1845354_-	potassium transporter Kup	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	5.9e-68	30.5
WP_014529577.1\|1846063_1846213_+	hypothetical protein	NA	NA	NA	NA
WP_014529578.1\|1846540_1847584_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_014529579.1\|1847666_1848401_-	NPP1 family protein	NA	NA	NA	NA
WP_186808902.1\|1848759_1848969_-	hypothetical protein	NA	NA	NA	NA
WP_003528236.1\|1849661_1850252_-	hypothetical protein	NA	NA	NA	NA
WP_010969358.1\|1850336_1851791_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_010969357.1\|1851947_1853195_+	threonine ammonia-lyase	NA	NA	NA	NA
WP_003528242.1\|1853272_1853593_+	transcriptional activator HlyU	NA	NA	NA	NA
WP_014529582.1\|1853902_1855876_-	bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA	NA	NA	NA
WP_003528246.1\|1856000_1856462_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010969355.1\|1856619_1857738_+	alanine dehydrogenase	NA	NA	NA	NA
WP_010969354.1\|1857779_1858247_-	DUF1203 domain-containing protein	NA	NA	NA	NA
WP_010969353.1\|1858348_1858912_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010969352.1\|1858917_1859781_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_010969351.1\|1859978_1860728_-\|tRNA	alanyl-tRNA editing protein	NA	NA	NA	NA
WP_014529584.1\|1860735_1861776_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	3.3e-44	38.1
WP_010969349.1\|1862090_1862939_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_003528289.1\|1863132_1863372_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_010969348.1\|1863368_1863767_+	PIN domain-containing protein	NA	NA	NA	NA
WP_003528293.1\|1863843_1864170_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_010969347.1\|1864166_1864511_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_014529585.1\|1864715_1864916_-	hypothetical protein	NA	NA	NA	NA
WP_014529586.1\|1864915_1865293_-	HNH endonuclease	A0A291AUJ4	Sinorhizobium_phage	8.4e-43	65.0
WP_014529587.1\|1865289_1865829_-	hypothetical protein	A0A291AUJ2	Sinorhizobium_phage	1.1e-27	45.2
WP_014529588.1\|1865825_1866197_-	DUF4326 domain-containing protein	A0A291AUQ7	Sinorhizobium_phage	6.4e-19	39.7
WP_017265688.1\|1866193_1866376_-	hypothetical protein	A0A291AUC9	Sinorhizobium_phage	1.9e-08	54.5
WP_014529589.1\|1866368_1866692_-	hypothetical protein	A0A291AUJ5	Sinorhizobium_phage	1.3e-15	47.0
WP_014529590.1\|1866688_1867021_-	hypothetical protein	NA	NA	NA	NA
WP_017265689.1\|1867036_1867282_-	hypothetical protein	NA	NA	NA	NA
WP_014529592.1\|1867278_1867452_-	hypothetical protein	NA	NA	NA	NA
WP_017265691.1\|1867571_1867805_-	hypothetical protein	NA	NA	NA	NA
WP_014529594.1\|1867898_1868081_-	hypothetical protein	A0A291AUK1	Sinorhizobium_phage	2.6e-05	41.7
WP_014529595.1\|1869044_1869710_-	helix-turn-helix domain-containing protein	A0A1X9HW95	Ruegeria_phage	9.1e-24	40.3
WP_014529596.1\|1870271_1870727_+	hypothetical protein	NA	NA	NA	NA
WP_014529597.1\|1870726_1870948_+	hypothetical protein	NA	NA	NA	NA
WP_014529598.1\|1871193_1871400_+	hypothetical protein	NA	NA	NA	NA
WP_014529599.1\|1871396_1872920_+	S-adenosylmethionine-binding protein	A0A2I7QIB9	Vibrio_phage	2.6e-13	28.2
WP_014529600.1\|1872916_1873222_+	hypothetical protein	A0A291AUK8	Sinorhizobium_phage	3.3e-21	55.0
WP_020479328.1\|1873227_1873476_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_014529601.1\|1873586_1874840_+	hypothetical protein	A0A291AUS5	Sinorhizobium_phage	3.2e-155	71.5
WP_014529602.1\|1874823_1875483_+	antitermination factor NusG	NA	NA	NA	NA
WP_014529603.1\|1875711_1876458_+	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	3.0e-116	84.7
WP_014529604.1\|1876606_1877248_+	hypothetical protein	A0A291AUL0	Sinorhizobium_phage	1.6e-54	58.9
WP_014529605.1\|1877244_1879287_+\|terminase	phage terminase large subunit family protein	A0A291AUK9	Sinorhizobium_phage	0.0e+00	89.7
WP_014529606.1\|1879297_1879534_+	hypothetical protein	A0A291AUL5	Sinorhizobium_phage	7.6e-26	79.5
WP_014529607.1\|1879530_1881252_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	9.2e-286	83.2
WP_014529608.1\|1881248_1882154_+	S49 family peptidase	A0A291AUM2	Sinorhizobium_phage	3.1e-144	86.1
WP_014529609.1\|1882179_1882722_+	hypothetical protein	A0A291AUL6	Sinorhizobium_phage	1.4e-38	77.5
WP_014529610.1\|1882724_1883081_+\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	3.1e-47	84.7
WP_014529611.1\|1883108_1884140_+\|capsid	major capsid protein	A0A291AUL7	Sinorhizobium_phage	1.9e-177	87.1
WP_014529612.1\|1884214_1884619_+	hypothetical protein	A0A291AUM1	Sinorhizobium_phage	6.1e-15	60.6
WP_014529613.1\|1884615_1884942_+	hypothetical protein	A0A291AUL9	Sinorhizobium_phage	3.6e-34	70.8
WP_014529614.1\|1884944_1885238_+	hypothetical protein	A0A291AUM3	Sinorhizobium_phage	1.0e-27	66.0
WP_014529615.1\|1885239_1885704_+	hypothetical protein	A0A291AUM4	Sinorhizobium_phage	1.5e-49	65.6
WP_011975792.1\|1885797_1886208_+\|tail	tail protein	A0A291AUM5	Sinorhizobium_phage	3.7e-52	76.5
WP_014529616.1\|1886220_1886622_+	hypothetical protein	A0A291AUM7	Sinorhizobium_phage	9.9e-50	77.7
WP_014529419.1\|1886669_1886861_+	hypothetical protein	A0A291AUN4	Sinorhizobium_phage	1.5e-19	74.2
WP_014529617.1\|1886861_1887041_-	hypothetical protein	NA	NA	NA	NA
WP_014529618.1\|1887143_1889015_+	hypothetical protein	A0A291AUM6	Sinorhizobium_phage	6.9e-186	59.4
WP_014529619.1\|1889014_1889665_+	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	5.7e-79	69.1
WP_014529620.1\|1889661_1890252_+	DUF2163 domain-containing protein	A0A291AUM8	Sinorhizobium_phage	5.3e-76	72.1
WP_013843999.1\|1890397_1890670_-	hypothetical protein	NA	NA	NA	NA
WP_014529621.1\|1890741_1891146_+	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	1.6e-47	70.9
WP_014529622.1\|1891152_1893810_+\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	9.9e-263	64.2
WP_026029902.1\|1893809_1895324_+	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	6.0e-265	87.6
WP_014529624.1\|1895335_1896469_+	hypothetical protein	A0A2L2R219	Sinorhizobium_phage	6.1e-36	42.9
WP_014529625.1\|1896468_1896816_+	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.3e-21	47.4
WP_014529626.1\|1896802_1897138_+	hypothetical protein	A0A291AUN7	Sinorhizobium_phage	9.8e-27	71.9
WP_014529627.1\|1897559_1897829_-	hypothetical protein	NA	NA	NA	NA
WP_014529628.1\|1897977_1898946_+	chitinase	A0A076G6J8	Sinorhizobium_phage	1.7e-164	86.4
WP_014529629.1\|1898945_1899263_+	ammonia monooxygenase	A0A291AUV3	Sinorhizobium_phage	3.4e-37	63.9
WP_014529630.1\|1899262_1899547_+	hypothetical protein	A0A076G8H8	Sinorhizobium_phage	9.2e-26	61.7
WP_014529631.1\|1899750_1900116_+	hypothetical protein	A0A076GD39	Sinorhizobium_phage	3.7e-43	73.3

DBSCAN-SWA_6

2010399 : 2021648

uncultured_Mediterranean_phage(80.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010969286.1\|2010399_2011938_-	LysM peptidoglycan-binding domain-containing protein	I3PV24	Clostridium_phage	1.0e-14	32.8
WP_010969285.1\|2012261_2012915_-	biotin transport regulator	NA	NA	NA	NA
WP_014526709.1\|2013086_2013740_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.6e-15	34.6
WP_010969283.1\|2013736_2014507_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-22	30.9
WP_003534571.1\|2014534_2015818_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.0e-101	47.0
WP_003534569.1\|2015954_2016797_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.2
WP_010969282.1\|2016793_2017441_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_003534564.1\|2017514_2017721_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	8.2e-08	65.9
WP_010969280.1\|2017815_2018925_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-29	37.6
WP_010969279.1\|2018989_2019709_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.8e-40	45.2
WP_014526708.1\|2019701_2020541_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.8e-32	34.7
WP_010969277.1\|2020613_2021648_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	2.0e-22	42.6

DBSCAN-SWA_7

2238986 : 2299154

Bacillus_phage(16.67%)

integrase,terminase,tRNA,capsid,tail,head,portal

attL 2282324:2282343|attR 2295955:2295974

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003533050.1\|2238986_2239274_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_003533048.1\|2239378_2240083_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_003533046.1\|2240206_2240704_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_003533044.1\|2240637_2240973_-	hypothetical protein	NA	NA	NA	NA
WP_010969169.1\|2240969_2241125_-	hypothetical protein	NA	NA	NA	NA
WP_014529717.1\|2241066_2242266_+	AEC family transporter	NA	NA	NA	NA
WP_003533037.1\|2242247_2243900_-	oxidoreductase	NA	NA	NA	NA
WP_003533035.1\|2244042_2244984_+	aspartate carbamoyltransferase catalytic subunit	A7RB08	Paramecium_bursaria_Chlorella_virus	1.2e-29	35.2
WP_010969167.1\|2244980_2246273_+	dihydroorotase	NA	NA	NA	NA
WP_014529718.1\|2246308_2246914_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_014529719.1\|2246913_2248065_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.6e-26	42.9
WP_003533027.1\|2248274_2250959_+	type I DNA topoisomerase	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	3.6e-103	32.2
WP_014529720.1\|2250961_2253331_+	ribonuclease R	Q0GXV6	Lactococcus_phage	9.3e-55	32.7
WP_010969162.1\|2253367_2253823_+	DUF983 domain-containing protein	NA	NA	NA	NA
WP_010969161.1\|2253819_2254536_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_014529721.1\|2254548_2255733_+	MFS transporter	NA	NA	NA	NA
WP_003537640.1\|2255827_2255995_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_003537641.1\|2256481_2257849_-	PleD family two-component system response regulator	W8CYM9	Bacillus_phage	1.5e-17	43.2
WP_003537642.1\|2257866_2258238_-	response regulator	A0A1V0SGR9	Hokovirus	6.2e-06	24.4
WP_003537643.1\|2258394_2258664_+	DUF3572 domain-containing protein	NA	NA	NA	NA
WP_010969160.1\|2258870_2260163_+	DNA polymerase IV	NA	NA	NA	NA
WP_010969159.1\|2260293_2261520_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_010969158.1\|2261799_2265309_-	DNA polymerase III subunit alpha	A0A0K1Y8J9	Streptomyces_phage	6.9e-179	36.4
WP_010969157.1\|2265777_2266464_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-32	34.4
WP_014529722.1\|2266481_2267792_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_003531873.1\|2267812_2269141_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_010969155.1\|2269852_2270068_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_010969154.1\|2270061_2270427_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_014526683.1\|2270513_2270783_-	DUF1467 family protein	NA	NA	NA	NA
WP_010969152.1\|2270922_2271327_-	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_010969151.1\|2271385_2273053_-	ribonuclease J	NA	NA	NA	NA
WP_014529723.1\|2273080_2273848_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_010969150.1\|2273844_2275287_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_003531857.1\|2275306_2276818_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_003531855.1\|2276817_2278812_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_003531854.1\|2278819_2279128_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_003531851.1\|2279157_2279772_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_003531850.1\|2279923_2280415_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_003531848.1\|2280479_2281523_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_010969148.1\|2281543_2283625_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
2282324:2282343	attL	NA	NA	NA	NA
WP_010969147.1\|2283825_2284470_-	NADH ubiquinone oxidoreductase	NA	NA	NA	NA
WP_003531839.1\|2284476_2285781_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_010969146.1\|2285795_2286623_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_003531834.1\|2286639_2286894_-	hypothetical protein	NA	NA	NA	NA
WP_003531832.1\|2286893_2288084_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_014529726.1\|2288140_2288746_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_003531828.1\|2288763_2289342_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_003531826.1\|2289332_2289698_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_014529727.1\|2290831_2292397_+\|integrase	integrase	NA	NA	NA	NA
WP_050810588.1\|2292496_2293726_+\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	1.4e-46	32.2
WP_014529729.1\|2293722_2294130_+	gene transfer agent family protein	NA	NA	NA	NA
WP_014529730.1\|2294126_2295683_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	2.2e-44	36.5
WP_014529731.1\|2295686_2296316_+	hypothetical protein	NA	NA	NA	NA
2295955:2295974	attR	NA	NA	NA	NA
WP_014529732.1\|2296312_2296666_+	HNH endonuclease	Q38456	Bacillus_phage	4.2e-20	48.1
WP_014529733.1\|2296662_2297298_+	hypothetical protein	NA	NA	NA	NA
WP_014529734.1\|2297285_2297588_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_014529735.1\|2297577_2298018_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_144005754.1\|2298010_2298430_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_014529737.1\|2298429_2298747_+\|head	phage head closure protein	NA	NA	NA	NA
WP_014529738.1\|2298743_2299154_+\|terminase	phage terminase small subunit P27 family	A0A142KAM7	Gordonia_phage	6.9e-06	39.4

DBSCAN-SWA_8

2356218 : 2399399

Sinorhizobium_phage(57.14%)

terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014529760.1\|2356218_2356587_-	hypothetical protein	A0A076GD39	Sinorhizobium_phage	2.4e-42	71.7
WP_041862322.1\|2356791_2357076_-	hypothetical protein	A0A076G8H8	Sinorhizobium_phage	3.2e-26	64.9
WP_014529762.1\|2357394_2358363_-	chitinase	A0A076G6J8	Sinorhizobium_phage	2.1e-162	85.8
WP_041862407.1\|2358563_2358815_+	hypothetical protein	NA	NA	NA	NA
WP_186007363.1\|2359414_2359672_-	hypothetical protein	NA	NA	NA	NA
WP_014529764.1\|2359956_2360292_-	hypothetical protein	A0A291AUN7	Sinorhizobium_phage	8.3e-26	69.7
WP_014529765.1\|2360278_2360626_-	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	4.1e-20	46.5
WP_014529766.1\|2360625_2361726_-	hypothetical protein	A0A291AUN5	Sinorhizobium_phage	6.7e-32	56.5
WP_014529767.1\|2361737_2363252_-	hypothetical protein	A0A2D2W219	Sinorhizobium_phage	6.4e-267	88.2
WP_014529768.1\|2363251_2365909_-\|tail	phage tail protein	A0A291AUN1	Sinorhizobium_phage	5.2e-264	64.3
WP_014529769.1\|2365915_2366320_-	hypothetical protein	A0A291AUN0	Sinorhizobium_phage	6.5e-49	73.9
WP_011976009.1\|2366388_2366661_+	hypothetical protein	NA	NA	NA	NA
WP_011976010.1\|2366807_2367398_-	hypothetical protein	A0A291AUM8	Sinorhizobium_phage	3.2e-73	68.5
WP_011976011.1\|2367394_2368048_-	hypothetical protein	A0A291AUM9	Sinorhizobium_phage	2.0e-55	55.0
WP_014529559.1\|2368111_2368507_+	hypothetical protein	NA	NA	NA	NA
WP_011976013.1\|2368503_2370600_-\|tail	phage tail length tape measure family protein	A0A076G7H2	Sinorhizobium_phage	2.4e-17	64.4
WP_011976014.1\|2370621_2371056_+	hypothetical protein	NA	NA	NA	NA
WP_011976016.1\|2371474_2371876_-	hypothetical protein	NA	NA	NA	NA
WP_011976017.1\|2371890_2372376_-	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	2.4e-10	30.9
WP_011976018.1\|2372377_2372803_-	hypothetical protein	NA	NA	NA	NA
WP_014529771.1\|2373009_2373456_-	hypothetical protein	W6E8K5	Rhizobium_phage	9.7e-14	41.0
WP_014529772.1\|2373455_2374493_-\|head	head morphogenesis protein SPP1 gp7	A0A076G6I6	Sinorhizobium_phage	7.4e-73	47.5
WP_014529773.1\|2374553_2374697_+	hypothetical protein	NA	NA	NA	NA
WP_014529774.1\|2374693_2375059_-	hypothetical protein	A0A076G8G5	Sinorhizobium_phage	9.6e-44	73.3
WP_011976022.1\|2375139_2375301_+	hypothetical protein	NA	NA	NA	NA
WP_014529775.1\|2375310_2375805_-	hypothetical protein	A0A059VG19	Pseudomonas_phage	3.8e-19	44.2
WP_014529776.1\|2375835_2376291_-	hypothetical protein	NA	NA	NA	NA
WP_014529777.1\|2376304_2377258_-	DUF2184 domain-containing protein	L7TMZ5	Rhizobium_phage	2.8e-74	49.8
WP_014529778.1\|2377272_2377710_-	DUF2190 family protein	NA	NA	NA	NA
WP_014529779.1\|2377709_2378852_-	DUF2213 domain-containing protein	A0A2R3UA67	Siphoviridae_environmental_samples	9.3e-85	48.9
WP_187294443.1\|2378930_2379086_+	hypothetical protein	NA	NA	NA	NA
WP_014529780.1\|2379091_2379319_-	hypothetical protein	A0A1B1IHZ5	Skeletonema_virus	1.1e-16	59.7
WP_014529781.1\|2379402_2381223_-	DUF1073 domain-containing protein	A0A2H4J4I9	uncultured_Caudovirales_phage	5.0e-173	51.9
WP_041862326.1\|2381230_2382649_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.6e-158	62.2
WP_014529783.1\|2382593_2383151_-	hypothetical protein	A0A2H4J2I6	uncultured_Caudovirales_phage	3.2e-22	42.6
WP_080567533.1\|2383243_2383420_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_144005756.1\|2383736_2384240_+	hypothetical protein	NA	NA	NA	NA
WP_014529784.1\|2384216_2384942_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014529785.1\|2385256_2385508_+	acyl carrier protein	NA	NA	NA	NA
WP_014529786.1\|2385647_2386268_-	hypothetical protein	A0A076G6H3	Sinorhizobium_phage	2.6e-33	38.5
WP_014529787.1\|2386264_2386708_-	GcrA cell cycle regulator	NA	NA	NA	NA
WP_041862329.1\|2386704_2387481_-	hypothetical protein	NA	NA	NA	NA
WP_014529789.1\|2387422_2388277_-	hypothetical protein	M4QM11	Sulfitobacter_phage	2.4e-13	34.9
WP_014529790.1\|2388273_2388651_-	DUF1064 domain-containing protein	A0A0R6PIZ9	Moraxella_phage	8.5e-11	38.5
WP_014529791.1\|2388647_2388848_-	hypothetical protein	A0A076G6Y4	Sinorhizobium_phage	9.6e-22	74.6
WP_014529792.1\|2388844_2389030_-	hypothetical protein	NA	NA	NA	NA
WP_041862331.1\|2389034_2389394_-	hypothetical protein	NA	NA	NA	NA
WP_018009773.1\|2389445_2389820_-	hypothetical protein	NA	NA	NA	NA
WP_014529795.1\|2390156_2390360_-	hypothetical protein	NA	NA	NA	NA
WP_014529796.1\|2390493_2391438_-	hypothetical protein	NA	NA	NA	NA
WP_018009771.1\|2391434_2392004_-	HNH endonuclease	A0A076G7D7	Sinorhizobium_phage	9.0e-89	85.2
WP_014529797.1\|2392096_2392345_+	hypothetical protein	NA	NA	NA	NA
WP_041862334.1\|2392347_2392539_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_018009769.1\|2392633_2393386_+	helix-turn-helix domain-containing protein	A0A291AUK0	Sinorhizobium_phage	3.1e-68	58.1
WP_014529799.1\|2394266_2394614_+	hypothetical protein	NA	NA	NA	NA
WP_018009767.1\|2394613_2394931_+	hypothetical protein	A0A1I9SES3	Klebsiella_phage	4.1e-06	42.5
WP_014529801.1\|2394927_2395164_+	hypothetical protein	A0A076G7C7	Sinorhizobium_phage	2.0e-18	53.8
WP_014529802.1\|2395165_2396383_+	hypothetical protein	A0A076G8D7	Sinorhizobium_phage	2.9e-44	53.8
WP_014529803.1\|2396385_2397186_+	ERF family protein	NA	NA	NA	NA
WP_014529804.1\|2397182_2397851_+	YqaJ viral recombinase family protein	K7ZRM9	Xanthomonas_citri_phage	1.0e-46	47.0
WP_014529805.1\|2397853_2398315_+	recombination protein NinB	A0A0P0ZCW6	Stx2-converting_phage	3.2e-20	43.8
WP_014529806.1\|2398311_2398989_+	hypothetical protein	NA	NA	NA	NA
WP_014529807.1\|2398985_2399399_+	hypothetical protein	Q8W6F3	Sinorhizobium_phage	3.6e-47	73.9

DBSCAN-SWA_9

3186826 : 3195180

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010970345.1\|3186826_3187612_+	aminoglycoside 3'-phosphotransferase	Q75ZG1	Hepacivirus	5.2e-71	54.5
WP_010970346.1\|3187653_3188133_-	VOC family protein	NA	NA	NA	NA
WP_003528562.1\|3188341_3188776_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_003528561.1\|3188931_3189855_+	arginase	A0A0N9R043	Chrysochromulina_ericina_virus	5.1e-25	32.3
WP_003528560.1\|3190032_3190512_+	purine-binding chemotaxis protein CheW	Q56AR1	Bacillus_thuringiensis_phage	4.3e-07	24.0
WP_014531024.1\|3190827_3192357_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.7e-119	43.9
WP_012477343.1\|3192369_3193107_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.1e-57	47.5
WP_013844892.1\|3193398_3195180_+	PAS domain-containing methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-11	47.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017327

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017326

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_017325

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection