CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015671	Cellulomonas gilvus ATCC 13127, complete sequence	3 crisprs	csa3,DEDDh,cas3,WYL,cas4,DinG,PD-DExK	0	0	1	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_015671_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015671_1

413648-413792

Orphan

Consensus_repeat	Method
CGCGCGCCGTTGTGGGTGGGGATGGTCACGCCTGGCGTGACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015671_1

>merge|NC_015671|1|413648-413792|CRISPRCasFinder
CGCGCGCCGTTGTGGGTGGGGATGGTCACGCCTGGCGTGACGAAGTCCACCCACACCTCGCTGCCGCCCCCGGGGACGACGCCCGCCGCGCCCCTGCCGGTACGCGCGCCGTTGTGGGTGGAGATGGTCACGCCTGGCGTGACGA

>NC_015671|1|1|413648-413792|CRISPRCasFinder
CGCGCGCCGTTGTGGGTGGGGATGGTCACGCCTGGCGTGACGA	AGTCCACCCACACCTCGCTGCCGCCCCCGGGGACGACGCCCGCCGCGCCCCTGCCGGTA
CGCGCGCCGTTGTGGGTGGAGATGGTCACGCCTGGCGTGACGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015671.1\|WP_013882418.1\|412484_413492_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NC_015671.1\|WP_013882425.1\|419593_420784_-\|xylose-isomerase	unknown	unknown	gnl\|CDD\|237170
NC_015671.1\|WP_013882419.1\|413880_415245_-\|hypothetical-protein	unknown	unknown	unknown
NC_015671.1\|WP_013882427.1\|422072_423155_+\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NC_015671.1\|WP_013882412.1\|406181_407252_+\|DUF2520-domain-containing-protein	unknown	unknown	gnl\|CDD\|227782
NC_015671.1\|WP_013882415.1\|408767_410516_+\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|236102
NC_015671.1\|WP_013882423.1\|417707_418046_+\|Lsr2-family-protein	unknown	unknown	gnl\|CDD\|378714
NC_015671.1\|WP_041574060.1\|411449_412424_-\|hypothetical-protein	unknown	unknown	unknown
NC_015671.1\|WP_013882426.1\|420864_422049_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NC_015671.1\|WP_013882409.1\|403662_404142_+\|DUF3180-domain-containing-protein	unknown	unknown	gnl\|CDD\|378650
NC_015671.1\|WP_013882428.1\|423161_423650_+\|hypothetical-protein	unknown	unknown	unknown
NC_015671.1\|WP_013882422.1\|417423_417603_+\|hypothetical-protein	unknown	unknown	unknown
NC_015671.1\|WP_013882416.1\|410543_411446_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|238806
NC_015671.1\|WP_013882424.1\|418127_419564_-\|xylulokinase	unknown	unknown	gnl\|CDD\|198375
NC_015671.1\|WP_013882414.1\|408150_408771_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|376751
NC_015671.1\|WP_013882421.1\|415892_417404_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NC_015671.1\|WP_013882413.1\|407248_408154_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|376824
NC_015671.1\|WP_013882420.1\|415241_415799_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132028
NC_015671.1\|WP_150104794.1\|404748_406185_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225962
NC_015671.1\|WP_013882410.1\|404182_404689_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225937

Protein	Function_ID	Function_description	E-value
NC_015671.1\|WP_013882418.1\|412484_413492_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.94295e-17
NC_015671.1\|WP_013882425.1\|419593_420784_-\|xylose-isomerase	gnl\|CDD\|237170	PRK12677, PRK12677, xylose isomerase; Provisional.	0
NC_015671.1\|WP_013882427.1\|422072_423155_+\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	5.47366e-75
NC_015671.1\|WP_013882415.1\|408767_410516_+\|L-aspartate-oxidase	gnl\|CDD\|236102	PRK07804, PRK07804, L-aspartate oxidase; Provisional.	0
NC_015671.1\|WP_013882420.1\|415241_415799_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	2.2942e-25
NC_015671.1\|WP_013882423.1\|417707_418046_+\|Lsr2-family-protein	gnl\|CDD\|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	1.22103e-51
NC_015671.1\|WP_013882426.1\|420864_422049_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	7.15652e-31
NC_015671.1\|WP_013882409.1\|403662_404142_+\|DUF3180-domain-containing-protein	gnl\|CDD\|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	3.95005e-30
NC_015671.1\|WP_013882416.1\|410543_411446_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|238806	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.	3.49005e-116
NC_015671.1\|WP_013882424.1\|418127_419564_-\|xylulokinase	gnl\|CDD\|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	1.33233e-154
NC_015671.1\|WP_013882414.1\|408150_408771_+\|aspartate-1-decarboxylase	gnl\|CDD\|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	4.19589e-73
NC_015671.1\|WP_013882413.1\|407248_408154_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	1.67385e-129
NC_015671.1\|WP_013882421.1\|415892_417404_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NC_015671.1\|WP_150104794.1\|404748_406185_+\|PH-domain-containing-protein	gnl\|CDD\|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	9.32598e-39
NC_015671.1\|WP_013882412.1\|406181_407252_+\|DUF2520-domain-containing-protein	gnl\|CDD\|227782	COG5495, COG5495, Uncharacterized conserved protein [Function unknown].	2.30429e-42
NC_015671.1\|WP_013882410.1\|404182_404689_+\|PH-domain-containing-protein	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	1.12927e-21

>NC_015671.1|WP_013882418.1|412484_413492_-|IS481-family-transposase
MSHANAPFTPEGRLRLVRRCAHRPIAHVAAEAGISRQCLSKWKARFDELGEVGLADRASVPHASPTQLEPDLVALIETWRREHKWSARAIHLELVRRGHQVSVATVGRWLVRLGISRRRDIDPDGSMNRTAGRITARYPGHMVHLDVKKVGRIPDGGGWRAHGRGSAADKAAQRAKTKGARAGYVYLHSAVDGFSRLAYTEHLPDEKAATTIGFFCRARAFFAAHGINRLVRVVTDNGANYTAKAFTRTVTAFASRHQRIRPHTPRHNGKVERYNRILAEELLYARIWTSEAERAAAIKIWNVHYNYHRCHTAAGNQPPASRLHAGVTNLMSRNT
>NC_015671.1|WP_041574060.1|411449_412424_-|hypothetical-protein
MLAVVETSTGPPPRRQVLRAWCAREPRMRETDVAVLQTDFATPTLAPGGRSLLFMRQRSVEDRAHEGVFRLDLASGRIDHSGFRFRPRSSWTGPQVAYGLSPDGSRALICESWVDRTVDDRRGVSAERLTLTLATFDGSDPRELMTLHGVSHWLHSDQVSVQFSPDGRLAALSVTAAHVVEDLPSWDVRPRPVWGWTRRVMVLDTSTWETKHVYERGSNLAGPAAWGPASDRLLLETELGVTVQHLEGAADMVKTLPLESSENDQSRLLGMLDEERVLYFDVRRRQASIDSIRISDGERTRLRQWPAAVPPRIATAPLAAELWD
>NC_015671.1|WP_013882416.1|410543_411446_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MTTTTGVLPGDPGPDPAAVRRLVGIALDEDLGPAPGRDVTSQATIAPTTTGTADLVARADGVVAGLVVVPEVLRQVAERLDLAPATLVVHVPDGTRVTRGDVLAELTGPVQLLLVAERTLLNLASRASGVATHTRRWADALVGTSARVLDTRKTTPGLRALEKYAVRCGGGTNKRMGLYDVAMVKDNHVAAAGSVTAAIEAVRTRFPGVPIQVEADTRDQALEAVAAGADFLLLDNMPTPVLSDVVAAVRAVAPATELEATGNLTLDRAREVASTGVDHLSVGGLTHSSPILDLALDLRA
>NC_015671.1|WP_013882415.1|408767_410516_+|L-aspartate-oxidase
MTAPVTTPSVPLPDDVTTAPVLATRLAAPAPGWTVEVDAVVVGSGIAGLTAALELRTRVPRVLLVTKDLLASGSTVWAQGGIAAALDPEDSPEAHLADTLVAGGGLCDPRAVEVLVTEGPARVRELVARGAVFDTAPDGQISLTREGGHHADRIAHAGGDATGAEISRALVAQIEAVRDDPGIEVIEHALVLDVLTGPAGPDGRPGAVCGVTLHVIGEGQRDGVGAALSKAVVFATGGIGQVFRSSTNPPLATGDGIAAALRAGAVLGDVEFVQFHPTVLWLGSGVKGQLTLVSEAVRGEGALLVDTDGVRFMPDVHPMAELAPRDVVAHAIVRQMAATGSDHVWLDARHLGADFLRRRFPTINERLLEHGIDLTTDLVPVAPAQHYHSGGVVTDLVGRTSLRGLYATGEVACTGVHGANRLASNSLLEGLVFAHRAARHIADQVASGVLRHADPVTRPGSEALVAAAARSRVQRLATDGPGVLRSADGLRRAAAGLALVPTDAHTRHDDGRLLAVPQVAEWETTNVHQVASVLTATALAREESRGGHARSDFPEPDERWRLRLAARLDGDGRLELTPTPIG
>NC_015671.1|WP_013882414.1|408150_408771_+|aspartate-1-decarboxylase
MTTLMRTMMTGKIHRATVTQADLHYVGSVTVDADLLAAADLLPGQQVDIVDVTNGARLTTYAIAGEAGSGQVCINGAAAHLVHPGDVVILIAYGVMSDAEARTYEPHVVLVDSENKIVDLSDDPGQVPDEWTAAAGLVPSGVPFAQGRDLVDHPHTIDRAAPHAHAGCGVREPHTHAGAASSDTGSDEPDGPADEQARDHAARGAR
>NC_015671.1|WP_013882413.1|407248_408154_+|pantoate--beta-alanine-ligase
MTTVVGTPTLARTRTELAAALSSAPRARTGRPHGTAVVMTMGALHAGHLSLVRHARTLAERVVVTIFVNPLQFAPSEDLSRYPRDLEGDLDLLSGPGLLGADDVVFAPGPQDVYPDGDPVVRVAAGAIGDVLEGESRPGHLDGVLTVVLKLLHLTRPDVALFGRKDAQQLAAVRRMVRDLDVPVEVVGVPLVRDDDGVALSSRNAYLSADDRRRALGLPAALRAGSEVALTGAAPGAVLDAARTALAAAGVDDVDYVALVHPDDFTPAGDEHVGEALLLLAARVGSTRLIDNTTVTLGDRA
>NC_015671.1|WP_013882412.1|406181_407252_+|DUF2520-domain-containing-protein
MTADRRPGRLGVGVVGAGRVGAVLGSALRAAGHPVVGASAVSQASRERVEDLLPGVPVLEVPEVVRRAELVLLTVPDDALGPLVQGLADLGAWQAGQIVVHTSGRYGVGVLEPARLAGVIPLAIHPAMTFTGTSLDVARLVGCPFAVTGPTPVLPIGQALAVEVGGEPTVLDESARGLYHAALAHGANHLVVLVAQAAQALAAAGVPDPGRMLTPLLEAALDGALRAESTAEGAPTDRAQGPGAIGALTGPVRRGDVGTVREHLAVLDAFAVHAGAPDVPAAYRTLARAAGARALAAGLLPEPAAADVLDALAVASVTRPEVAGMPGDAGSLQQGSDDAPLDPHPDDGPTGPQEDA
>NC_015671.1|WP_150104794.1|404748_406185_+|PH-domain-containing-protein
MHPVTPALKGWKAIVAVVAFASYQFADDVRAASDLLAGRGWLFAVGLVLLVGVVGFAYSGLAWRMTRYAVTDEAVHYRSGLVFRQQRQARLDRLQAVDVVQPLLARLFGLADLRLEVAGGSGSAVSLAYLREPDAQALRSELLALAAGLRRPTTNPSAADAPAVPLPGGEPTAAVPTGRVPGFEEAPEREVYTVPMSRLLVSTLRSAGVVGLVVMLVAVVAGALIAQEAGPLFALLPAALGFVGALWGRVNSGAGFRAAWSPDGIRLRHGLTEQRAQTVPPGRVQAVRLTQSLWWRGPDWWRVQINVAGYGTGDDAARATVLHPVATRQEAAAALWLVLPDLGVEDPWELINTAMSGMDDDGGFITSPRSARWLDPIGWRRRGVRVTRTALISRSGRLVRNVDVVPHERTQSLGLDQGPLQRRLGLASFVVHSTPGPVSPRVDHLEAKAAAALLDEQAERARTARASAGPELWMRGTA
>NC_015671.1|WP_013882410.1|404182_404689_+|PH-domain-containing-protein
MTDGPTRASAPFDPTDVTWTPVSPRLARARLTVMAVWLVPVLAVLALLAVVIPQPWLWLPFGIVAAFTLWGALLVRRQVGALAYAERADDLLVRRGILFRSLVVVPYGRMQYVDVTAGPVARAFKIASVQLHTASPQTTASIEGLPPAEAARLRDRLASRGEARLAGL
>NC_015671.1|WP_013882409.1|403662_404142_+|DUF3180-domain-containing-protein
MRRTRWQTLLAVALGVAAATWIVLDAADGQGALPPQVPWLVVAVELLIAGVVLSMGWAVRQFLRGKRPDLNPIRAARTAVLAKASCYTGALLAGWYGGQTIVVLLDLATPGNGLRAVAAGAATAGAVVLAVTGLVVEWFCRVPPPEQEEPEVPPQVTAT
>NC_015671.1|WP_013882419.1|413880_415245_-|hypothetical-protein
MNDLDQLLTGARDAIADATGPLDERTLSRVRGTVRRARIQRHAVTSVGAAACAGVLGTGVWYGIGQLEPTPTPPAHSPSQTLPSPAPSSDPTTPAAPVTPAERAKSIDDATVIERLSAPRTGETWTAPVLDDAVASSLLPADRLDTWSVYRVGERGGATLYLATEDVTTAIETPTFLRAGALMYEVDDDGARLVTCPSARTGDPCVDAATDVAAGVTVDEDTFYDTLTLPSSVDLGEGWKVSTDATRESDWFSPYGVPVGLTEQPVASIATVGSLTFAGAPVAAPGATGLVEGLSSAAYAWRLPFGSYVQLDSQDVPGTSFDDITWDDGVSRTDEWRTWTAGAGALSCMDAQFSLEDSHDPADWRRVGTTADGLPVMAPVAGGNDLSRTVRQHMLDKSWTMNEGSEVHGLDAGYPYATDDAFLEAQALIAVQAPDGTWHVRLRADALNVVFECA
>NC_015671.1|WP_013882420.1|415241_415799_-|sigma-70-family-RNA-polymerase-sigma-factor
MPRPWELLLDQVVRERYPRLVAHAALVAGSTSEAPDLVQEALVATFKGRARFTTVEQAEAYVRRAIASRAIDDARRRRRERLVAQRAAAQPAASAEDQAQAIGRDVMRALSVLSPRERACVVLRQMEDLSVAETASVLNLSEGSVKRYTSDGLARLAQILGTHPHVDETVPVRATTTRHATEGAR
>NC_015671.1|WP_013882421.1|415892_417404_+|lysine--tRNA-ligase
MTDAPLQPADDTPEQIRIRREKRERLLAEGTEPYPVSLPRTHTIEQVRAAYPDLEPGQETDDEVGVAGRVVFLRNTGKLCFATLQDGAGTRLQAMLSLAEVGEERLAAFKSDVDLGDHVFIHGRVIQSKRGELSVFADEWRMAAKSIRPLPNLYEGAELSDEARVRQRYVDLIVNSKARDMVRTRAAVVRSLRDNFARRGFLEVETPMLQTRAEGAAARQFETHMNAFDIELFLRIAPELFLKRAAVGGVERVFEINRNFRNEGVDATHSPEFAMLEAYEAYGDYDTMAALTQDLVQTAAMDALGTTEVTLADGSPYELGGQWTHLTMYESLSEAVGEHITHDTDDATLLRLLEKADIELAPAQRNHGKLVEELWEHHVGAHLHAPTFVRDFPVETSPLTRDHRSKPGLVEKWDLYVRGLELATAYSELVDPVVQRQRFEAQALLAARGDDEAMRIDEDFLTAMEFAMPPSGGMGMGIDRLLIAMTGQGIRDTILFPLVKPQA
>NC_015671.1|WP_013882422.1|417423_417603_+|hypothetical-protein
MNGLGGVLAAVLPSIGVGVLFWFAMRAIINADRTERQALARMDREAADAEKNAGPVVSD
>NC_015671.1|WP_013882423.1|417707_418046_+|Lsr2-family-protein
MAQKVQVLLVDDLDGSTADETVTFALDGVTYEIDLTTANAAELRDAFAKWVGHARKVSGRSTAGRATGSAPRRRRGDSDAQAIREWAKDKGLEVSERGRISAEVRKAYDDAH
>NC_015671.1|WP_013882424.1|418127_419564_-|xylulokinase
MALVAGVDSSTQSCKVVVRDAATGALVRSGRASHPDGTEVAPAAWWDALQTAIADAGGLDDVDAISVGGQQHGMVTLDETGEVVRDALLWNDTRSAQAALDLIDELGGPQQWADATGSVLVASLTVTKLRWLRDAEPANAARVAAVALPHDWLTWRLAGHGPGSGAAGLAELVTDRSDASGTGYWSPATDDYRRDLLELGLGHDAVLPRVLGPREAGPRSAVGARRPVLGPGAGDNAAAALGLGLQPGDVAVSIGTSGVVSAITSAATADGSGMVNGFADASGWFLPLACTLNASRVLDATARMLGVDHAGLSELALQAPAGADGLVLVPYLEGERTPNKPDATGALHGLRLANTTPAHLARAAVEGMLCALADGIDALRAQGVGVERLFLIGGGARSEAVRRIAPSVFGLDVLVPTPGEYVADGAARQAAWVLSGQDQAPAWSAAGSAETFTAPAAPHVREQYAAVRDLTATRPGTV
>NC_015671.1|WP_013882425.1|419593_420784_-|xylose-isomerase
MVRKPTPADKFSFGLWTVGWNAQDPFGSATRPWLDPVESVHKLAELGAAHVTFHDDDVVPFGSSDAEREKILDRFKGALAETGITVEMVTTNTFSHPIFKDGAFTSNDRRVRRYALRKILRNVDLAASLDADTFVMWGGREGAEYDSAKDLYAAHQAYADGIDTVAAYIKEKGYKLRIALEPKPNEPRGDILLPTIGHALGLIAKLENGDIVGLNPETGHEQMAGLNYTTGLAQALWAEKLFHIDLNGQRGIKYDQDLVFGHGDLFSAFATVDLLENGFPGGGPKYTGPVHFDYKPSRTEDFDGVWESARANMATYLLLKERAIAFREDPEVKEALEAAGVLELAKPTLNEGETLADFLADRSAFEDFDVEGVAKHGFGFVRLNQLALEHALGARG
>NC_015671.1|WP_013882426.1|420864_422049_+|ROK-family-transcriptional-regulator
MRPTAARQGTLRELNLGLVLREVLDAAGGHRPPPSRADVAAATGLARATVSALVDRLVAGGLLAELEPTPTMRAGRPAVPLAPAGGTLVALGAEVNVDYLAARTLDLTGDVIAETVVPGDHRGSDPAAVLRVLGEVADDVLARSTADAARRVVGTALALPGLVARDAGTLLLAPNLGWREVDVADLLAGSSQAFAAHRPHLANEADLAALAEARAQRPDGPDSFVYVSGEIGIGAALVLDGRVFGGRHGWAGELGHTLVADGRQLEQVAGQDAMLRAAGLDRQAGVAPLADALRHGEPAAHAAVTAAAAALGAALANVVNTVDVPDVVLGGTYARLAEHLAAPVADALRTHVLAAPWAPPTVRVARAGEIPALTGAALAVLDRVVADPADWLPA
>NC_015671.1|WP_013882427.1|422072_423155_+|beta-propeller-fold-lactonase-family-protein
MTSRELWIGTYPVAGAGNPVGLGEGVWSVHLDDETGELADARQVAVVASPSFVAADGDRLYAAVEDGAGRVVLLTPDEAGALTARHETPSGGAYPCHVLVTEHALLVANYSSGTLGVLPRQADGTFAEAAPQVHGHTGTGPRADRQEGPHAHFVAIAPGGRHVLVVDLGTDEVRRYAWDGTTATPDGIAATFAPGTGPRHLDFSADGRFAYVSGELDGAVHVLAWDAASATGTPVQQVPAVVVAADARTDDERARLGQGDHWIRHGAGDLSSHLLVDGDHVLVTVRGADVLTRWRIGSDGLLVDGRSHALGGHWPRHFAVVGPFVVVALEKPGELVVLDDAGHARSRLPVPSAACVLPRD
>NC_015671.1|WP_013882428.1|423161_423650_+|hypothetical-protein
MSPSWRSHPPSALSVDGPRVLLRREALPEVVALTEQGWELTSEAPIWMFLPAVFPATHRTWVHDRSSLFWTEYVDGVLQGERPLSARDAADVHRLYAEHAAWCGFPGWDTSRLWLLRGRPGLTLEQITDRIAERTNGRGFGGGPSPWLGQLAERVVTELLSD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_015671_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015671_2

1108665-1108770

Orphan

Consensus_repeat	Method
CGCCGAGCTGGCGGACAGGTACCAGTTCGGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015671_2

>merge|NC_015671|2|1108665-1108770|CRISPRCasFinder
CGCCGAGCTGGCGGACAGGTACCAGTTCGGGGGGTGGGGATGGGTCGGGGTGGCGGCGGGGCGTCCCGAGGGTCGCCGAGCTGGCGGACAGGTACCAGGTCGGGGG

>NC_015671|2|2|1108665-1108770|CRISPRCasFinder
CGCCGAGCTGGCGGACAGGTACCAGTTCGGGGG	GTGGGGATGGGTCGGGGTGGCGGCGGGGCGTCCCGAGGGT
CGCCGAGCTGGCGGACAGGTACCAGGTCGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015671.1\|WP_013883056.1\|1106773_1107286_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|372611
NC_015671.1\|WP_041574431.1\|1100001_1100916_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_015671.1\|WP_013883060.1\|1109993_1111430_-\|Na+/H+-antiporter-NhaA	unknown	unknown	gnl\|CDD\|377746
NC_015671.1\|WP_150104816.1\|1107287_1108523_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NC_015671.1\|WP_013883059.1\|1109629_1109932_-\|hypothetical-protein	unknown	unknown	unknown
NC_015671.1\|WP_013883063.1\|1113870_1118091_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239155
NC_015671.1\|WP_013883064.1\|1118121_1119681_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239028
NC_015671.1\|WP_013883054.1\|1105394_1105859_+\|hypothetical-protein	unknown	unknown	unknown
NC_015671.1\|WP_013883048.1\|1097731_1098697_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|240646
NC_015671.1\|WP_013883062.1\|1112487_1113870_+\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NC_015671.1\|WP_013883055.1\|1105785_1106721_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NC_015671.1\|WP_013883049.1\|1098720_1099776_-\|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213364
NC_015671.1\|WP_013883052.1\|1102638_1103658_-\|hypothetical-protein	unknown	unknown	unknown
NC_015671.1\|WP_049785605.1\|1121410_1122352_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213236
NC_015671.1\|WP_013883065.1\|1119730_1120177_-\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NC_015671.1\|WP_041574113.1\|1111431_1112274_-\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NC_015671.1\|WP_013883066.1\|1120190_1121414_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_015671.1\|WP_013883053.1\|1103839_1104712_-\|DUF4349-domain-containing-protein	unknown	unknown	gnl\|CDD\|379526
NC_015671.1\|WP_013883051.1\|1101066_1102635_-\|DUF2079-domain-containing-protein	unknown	unknown	gnl\|CDD\|370724
NC_015671.1\|WP_013883058.1\|1108785_1109598_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|365877

Protein	Function_ID	Function_description	E-value
NC_015671.1\|WP_013883056.1\|1106773_1107286_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	4.08216e-25
NC_015671.1\|WP_041574431.1\|1100001_1100916_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	9.65681e-18
NC_015671.1\|WP_013883060.1\|1109993_1111430_-\|Na+/H+-antiporter-NhaA	gnl\|CDD\|377746	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyze the exchange of H+ for Na+ in a manner that is highly dependent on the pH.	3.13594e-170
NC_015671.1\|WP_150104816.1\|1107287_1108523_-\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	5.64803e-18
NC_015671.1\|WP_013883063.1\|1113870_1118091_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_015671.1\|WP_013883064.1\|1118121_1119681_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239028	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). .	9.92447e-72
NC_015671.1\|WP_013883048.1\|1097731_1098697_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|240646	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	2.80702e-78
NC_015671.1\|WP_013883062.1\|1112487_1113870_+\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	2.03079e-105
NC_015671.1\|WP_013883055.1\|1105785_1106721_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	8.02267e-45
NC_015671.1\|WP_013883049.1\|1098720_1099776_-\|magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.73978e-135
NC_015671.1\|WP_049785605.1\|1121410_1122352_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213236	cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter. This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	5.28867e-104
NC_015671.1\|WP_013883065.1\|1119730_1120177_-\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	2.94807e-26
NC_015671.1\|WP_041574113.1\|1111431_1112274_-\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	5.50926e-153
NC_015671.1\|WP_013883066.1\|1120190_1121414_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	4.91571e-30
NC_015671.1\|WP_013883053.1\|1103839_1104712_-\|DUF4349-domain-containing-protein	gnl\|CDD\|379526	pfam14257, DUF4349, Domain of unknown function (DUF4349). This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 282 and 353 amino acids in length. There is a single completely conserved residue D that may be functionally important.	3.4114e-61
NC_015671.1\|WP_013883051.1\|1101066_1102635_-\|DUF2079-domain-containing-protein	gnl\|CDD\|370724	pfam09852, DUF2079, Predicted membrane protein (DUF2079). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.48777e-48
NC_015671.1\|WP_013883058.1\|1108785_1109598_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|365877	pfam00106, adh_short, short chain dehydrogenase. This family contains a wide variety of dehydrogenases.	1.38401e-42

>NC_015671.1|WP_150104816.1|1107287_1108523_-|mechanosensitive-ion-channel
MLVPLLAIAAGCVAAFIVAALVAAVVRRVGHRTTVAADLTRRSRRPLRVVLVVIAAWVALLVSTDDAGWRRVAVHGLLIALIVAASWLVGTLAFVLEDVAVARYRVDVVDNQHARRVRTQVQVLRRLTVAIITICAVAGVALTFPQARTFGASVLASAGVLSIVAGLAAQSSLANVFAGIQLAFTDAIRVDDVVIVQDEWGRIEEITLTYVVVHVWDDRRLILPSTYFTTTPFENWTRRAADLLGTVELDVDWQVPVDRMRTELTRLLEATDLWDRRVGVLQVTDAVGGVVRVRALASAVDAPTLFDLRCHVREGLVTWLQEHAPQGLPRSRWQSVPGTEPDAALEPRAATGALPAPGRWAGPDDTEQLESSSDARLFTGSIDALHRSEAFRGPGQDVIDEREQHGRGQER
>NC_015671.1|WP_013883056.1|1106773_1107286_-|thioredoxin-domain-containing-protein
MADTTVDPSRHVYGSPEAPVTVLEYGDLECPHCRAAAPVLRELVDSSDGRVRLVWRHFPLFEVHPHALTAALAAEAFAAHGRFWDLHDEAFAHQDRLADPDLRRYAAAAGIDPDEVVGDGAQRWAPAVEADYLAGLAHDVRGTPTLLVDGARWTGHLTVAALTAATAPRA
>NC_015671.1|WP_013883055.1|1105785_1106721_-|DNA-3-methyladenine-glycosylase-2-family-protein
MNGADEVVVRRPLDSAAALAYLVLHAVPGVERVRVEDDATAGLVERLVRGPAGPVRLTVHVRPDELRLVTSRPGPDLVAVAERWFGVGDDLAAVVAHLTAVPDDPLARLVRERPHLRVPGHVDAFEAAAQTVLGQQVSLAAARTFTGRLAAALGEPHDDLTQFPDATRVAAADPDALRTVLRVTSARSRTLVALARACVDGLELRPGADPDATRAGLLAVPGIGPWTADYLALRAFGDRDAFPAGDLVLRRAMAVPDARAAHAHARAWSPWRAYAAQHLWTAAAYARVTPAAATSPARPRRPADDPRAPRA
>NC_015671.1|WP_013883054.1|1105394_1105859_+|hypothetical-protein
MSQLLDLPVAPTPLLGAPPRIAGAPGPAVVVPEQRGPVDDVVLVFEDNAPVAGGSYHLAAVGPALAHAADGERIAELTGVWALPGRRRRDRVRRALAALERSASLAGYARLRVAVDASRTDVLAVLRAGWFTPVEREGRPQADVVVLEKWLLPA
>NC_015671.1|WP_013883053.1|1103839_1104712_-|DUF4349-domain-containing-protein
MTPPRAGRTGAVALVVALLLAGCSGGEGDAPGAGVDRAPQHAAAADEAAAVEAPSADETERLVIQTGSVSVTADDAPAVASEIARWVVAQGGRVDSRSETAATADETAWASLVVRVPAQRVTPLTDRLAELGTVTGIDLTSQDVTGTAQDLDARIHALEISVDRMESLMQDAGSTKDLLTAESALSDRQAELESLQAQRDRLADQVALSTLEISVAGPGALPATAERGTFATGLATGWDALVSTVAWLLVALGVLLPWLALLAAGTLVVVGLRRRARRRAAPSPAQTPAA
>NC_015671.1|WP_013883052.1|1102638_1103658_-|hypothetical-protein
MSTAHKDPRWREAERFAQRHARLVLARLDARVAAAGEDGALDLVGDDLAAFVEHHRSPVGRETVQRLHAAAGGRTAVCYARAGYTKMAVLWADQHGVALFGYTDAGHAAPLNGAGHALQTRALEAAEQQVRTAAAALTRHVASLRAEQERLEREAHAAALRAQEQDREQERRRRRRRDQHEATLGRAVSLLLALQIDPMALHATIQRLTLSTVVPAVADSADRLSLAERPHAVGLVRAMFDEAAGALEVATPDAARESPQFRAARLAVDRAYDALDVAEGADVAGHATPDDVAAALRDAERCWRALVAELVRSDAVPLVTAPLTAPVPRVPQPRLREHG
>NC_015671.1|WP_013883051.1|1101066_1102635_-|DUF2079-domain-containing-protein
MAHGPPWHDARVADDEVALDEHTPPPTDADQVPPAGRPERPAAPVSARETITLAPTTPTGTAAWCGPAVVAVLAAATYVVFSLLQWRRFEVPSWDLGIFTQLARRYAALDAPVVTIKGDGYNLLGDHFHPLLVALGPVYALSPHALTLLIAQDLLFAASVYVVARHAVRVLGALQGTLVGAAYAVSFGIVGAVAAQFHEIAFAVPLLAIALVALLRGRWLAAALWVAPLVFVKEDLGLTVAVFGLVMWWRARHGSDRPRLGLWLAGWGFGWVVLSTAVLIPLLSTRDQWDYGSRIDFAGIATHPWTAVTLLVDDGRKVLTLLVLLGITGLIGARSPVLLIAVPTIVWRFWADNDSYYGFTWHYSAVLMPIAFAALLDGVLLARRSPREWLRRYSMAAAAVAVAVAVLMVPRLDIARLGRPADLWAHSTREAESRAVLAAIPDDASVETDIGLMSYLVDRTDVFYVGNEGNPAPDFLLIDAYNGGWNPAPVDAAAYAQERHPGSTYTLVYDAGGYQLAQRVAG
>NC_015671.1|WP_041574431.1|1100001_1100916_-|DMT-family-transporter
MYVMLALIWGSSFLLIKVALEGLSPTQVVLGRIVLGALALLVVALVMRKPWPRGRRVWGHLVVLGVLLCVLPFLAFAWAGQHLASGLSSILNATTPLMTAGAAAAFLPNERLTRRQGVGLALGAVGVVVIVGPWTYLGELAEAAPLPAVLACLGATACYGLGMTYLRRFVTPLRLPAETVAAGQVGSAALVTLALAPLVAREPVALSTSVIVATVLLGVLGTGIAYVWNTQVVGAWGAQRASTVTYLTPVVGVALGMAVLGERLQWHEPVGGVLVVIGVIVAQGALRRRVRRSSQPTDLDTVRL
>NC_015671.1|WP_013883049.1|1098720_1099776_-|magnesium-and-cobalt-transport-protein-CorA
MAVVDDALYVDGHRVPAPATARGGDPERGALAWIGLLRPTDDELAAMATRYDLHPLAVEDAGKGHQRAKLERYGQTLFVVLRPAWYHDDDESVEFGEVHLFVGPDFVVTVRHAARPDLTAVRTRLEADPELLRLGSEAVLAAVMDEIVDSYAPVVTGLQGDIDEIEDDLFDGEVDPASSKRIYQLLSEVIGVQRAIGPLPEMLDALLRGAAKYGTDEEIQNQLRNVLDHAIRVTERADTFRTLLENALTLHSTLVMQEQNDAMRELAAASLAQGEESRSLTQASMDQSEEVKKISSWAAILFAPTLVASVYGMNFERIPELGWAWGYPFALVLMVVLGVCLWAVFKRRRWL
>NC_015671.1|WP_013883048.1|1097731_1098697_-|NAD(P)-binding-domain-containing-protein
MQRPTIVFPGGEPALAAHFAHGPLADRLRARGEVVVHQDLPDPDEAARRLVGAQVGLLGTHLSTAHLADLAGRTRLLAFTGTGAASYVDLDTCRSLGITVTNVTGYGDRAVAEHALALLLAALRGVVTGDRAVRAGDWTGAAGPELAGSTVAVIGAGAIGRAFARILAALDAHVLVVDPRPVEDLAALAGPDARQVDLREAFATADAVSLHLPLLPATRGLVTAEVLDLLRPGAVLVNTGRAEVIAPGALARRAARGDVRIACDVFDPEPLPADDPLLAVPGAVLTPHLGFRTPQALARMATGAVECVEAFLDGRPLRVVT
>NC_015671.1|WP_013883058.1|1108785_1109598_+|SDR-family-NAD(P)-dependent-oxidoreductase
MGVGRRVVVSGAGRGIGRGIALGLAAAGWDVGLVGRTRAHLDAVADEIARGSSGARTVVAVAELTDAAQVRAAVADLQGAWGGIDLLVNNAGVIEHAETDFADDDVEDAWRVVETNVRGPMLLAHAVLPDMLVRGSGRLLQISSGAGYSRSSSYTGYGISKGALARLTTLLDAQYRDRGIRTLDLAPGVVATDMTAGMPVHAQRTAWTSLDDVVALVRAFGDGELDALSGRLVRAGADTVDSLRAAADRIVAADARRLRVPSYGTDDPLA
>NC_015671.1|WP_013883059.1|1109629_1109932_-|hypothetical-protein
MHQTAKRCVQWAVGLWLLGAVVLIYGAQAYVWLADEVGSDAQAGLDAVDIVLTIARSALFPLGAVLIGAAVVIQTLAPGLRATSPGLQPARLADKGSPQQ
>NC_015671.1|WP_013883060.1|1109993_1111430_-|Na+/H+-antiporter-NhaA
MSVGPALRVRVPTLSPPVRDFLRTEAGSAVVLLVATLVALVWANSPWSAAYDDLWHLGAGLHLGSWALDMPLHAWVNDAAMAVFFLVVGLEISREATRGELRDKRTVAVPALGALGGLLVPVLLYLAVTAGTDVQHGWGVVMSTDTAFLVGILALFGPACPDRLRLFLLTLAIVDDIGAITVMAVFYTDRVDVAALAASGVLVLVLLALRWLRVWRLLPYAVVGVALWLAVHASGVHATLAGVAVGLIVPATAARREDVEAVRGYARDLVEETTAEREHLAELAARAAVPASDRMQRMLHPWSAYVVVPLFGLANAGVRLDAAALGDASGSRLTWAVMIALVVGNAIGITGAATLAIRMGLGDLPGRVRYGHLLGGAVLAGIGFTISLFIAGLAFDDEQHLTRAKIGILAGSLLAAVVGSLLLRWLGERLPLCSPPSAPPSALPPLPWRAPGTGPAPVDAAQSAPQGPSVPRSGGARP
>NC_015671.1|WP_041574113.1|1111431_1112274_-|polyphosphate-kinase-2
MGKKHARGGRDKISDEVYEAELFRLQTELVKLQEWTRSTGARIAVVFEGRDAAGKGGTIKRITEYLSPRTVRIAALPTPTEREKSQWYYQRYVAQLPAAGEIVLFDRSWYNRAGVERVMGYCTPQEHATFMRQTPIFEQMLVEDGILLRKYWFSVSDAEQLRRFRSRLSDPLRQWKLSTTDLQSIARWEDYSRAKDEMMVHTDIPTSPWFVVESDIKKHARLNMISHLLSTIPYVDVPREKVTLPDRPAPSSGYERPPRELSTYVPDHVASLLGDRERDL
>NC_015671.1|WP_013883062.1|1112487_1113870_+|NarK/NasA-family-nitrate-transporter
MAQSLATVDADSTSPTTTVAPAAGAPLTHRPGRWIDGWNPEDAQQWASAGRSVARRNLTLSIFAEFLGFAVWALWSIVVPQLPAAGFALTVDQMFWLIAVPSLVGATLRIPYTFAVPIFGGRNWTIISALLLLIPTISLAVVVQDPDSSFTLLLGVAALAGLGGGNFASSMANISFFYPEREKGRALGLNAAGGNIGTAAVQLAVPLVIVGAATVHLERAGWMFVPLAILAAVLAWRFMDNLSHAKSDPRSYGVAARQRHTWIISFVYIGTFGSFIGFSGAFPTLLKGTFPEVTLSIAFLGALVGSVARPLGGTLADRLGGARVTIAAFAVMGAGTVSAIFALRAHSFGAFLASFLVLFVATGVGNGSVYRMIPAVFRHGATDDADRARRARAAAGCLGIAGAVGAFGGFLIPRGFAASTSATGNIQAALWVIVGMYAVMAVVTWAVYSRRGSSFGATVI
>NC_015671.1|WP_013883063.1|1113870_1118091_+|molybdopterin-dependent-oxidoreductase
MTTTTTAPQGSTPSLEQVTTVCSYCGVGCGIVLDVGHDDEGRRVARGARGDKAHPANAGRLCTKGATSADMLAAGGRATRALVRAERGAEPAPAVLDETITLVADRLRAVIDEHGPDAVAFYVSGQMSLEAQYLANKLAKGYVRTQWIESNSRLCMASAGTGYKLSLGSDGPPGSYDDLDHADVFLVIGANMADCHPILFLRLLDRVKAGAKLIVVDPRRTATADKADLFLQVRPGTDLALLNGLLRLVVEAGGLDEEFVAEHTDGWDALAAMLEDYPADVVERLTGVPEADLRAAAALIAGAGSWVSCWTMGLNQSTHGTWNTNALINLHLATGAICRTGSGPFSLTGQPNAMGGREMGYMGPGLPGQRSTLDADDRAFVEDTWGLDRGTLRADATGRGTVDMFERMSAGEIKACWVICTNPVASVGNRRTVIEGLERAELVITQDAFADTETNAYADVVLPGALWSESDGVMINSERNLTLARAALAPPGDALPDWLLIARVATAMGYDGFGHTSAQEVFDELRAFANPRTGYDLRGVTYERLRAGSVQWPAAPDGPRRNPIRYLNDGVSQPLLERPDGTRPRLRFATPNGRAQFHARPHLPAAELPDDDYPFVLNTGRVQHHWHTLTKTGKVAKLTRLAPGPFVEVNPADAAALGITEGAHVEVSSRRGRAVLPAVLTERVRPGALFAPFHWNDLFGEYLAVNAVTSDAVDPLSFQPELKVCAVSLAPVPGAHAPADPAADRAVPDEPGAGTDPAAGGAPGAVSMRVLGAALGLDRLEPPVLGDAERRYLAGFLAGLGGGAPGTPVLPAGAPLDPDQALWVDGLLAGLFSRAPEPVRGREPGTGPDAGTRVRPLVVLWASQTGTAEELAAGVATALSAAGLAPRRVAMDGCTLADLPVGADLVLVTSTFGDGDAPDNGTAFWEALAAPDARRLDGARFAVLALGDSSYDRFCGHGRRLDHRLEELGAQRLVPRVDCEPGDDERAQAWCAGLVATLGTASVTSGQPTADATEPRPPAAVVPSAVAVPAGPSRATRQHPGRARLVGNRLLSQPGSAKEVREIVLDVAESDREVVYRAGDALGVRPTNAAALVEEWLEVTGWDPDQAVVLDGTPVPLRAALTTELDITRISQDLLTFVADRSGSAELRRLLRPDNRSDLARWTWCRQAVDVVARYARDVPADDLVGVLRRLATRQYSISSSPLVAPTAITLTTSVIRYASPEGVARGGVCSTFLADAPLGTTVPVHVQPTAHFRPPAPDVPAIMVGPGTGVAPFLGFLAERRAAGHRGANWLFFGEQHVATDFYHRDELAALQADGTLDRLDTAFSRDQRAKVYVQDRMREHGARVWSWLEDGASFYVCGDAGRMAKDVDAALREIVATHGGLAQDAADAYVRRLSTTHRYVRDVY
>NC_015671.1|WP_013883064.1|1118121_1119681_-|molybdopterin-dependent-oxidoreductase
MTTVAPPAEPAAPLGPARTRRWAGPVAGLAAGVVTVGVASVVALATGATTDPLVAVGAAFVDATPAWLKDAAVDAFGTADKLALGVGEVLVLACLAALAGVLAVRRWAWGAALVVLLGVVAMAAALGRPDAGWTAAVPSFVGTVAGLWTLRTLRRRARDDQRPDPDGRRGFLRAALVATGLGVVGIGLGRLGSAAGRAAAAVREQLTLPRPVRAAPAPTAGVDLGVEGAEPWVTPADDFYRIDTALVVPQVDPASWRLRVHGLVEQEVELTWDELLASDLVEAWVTLCCVSNPVGGDLVGNQRWLGLPVRDVLARARPTADADMVLSRSADGWTASTPLGALTDDRDALLAIGMDGEPLPAQHGFPVRMVVPGLYGYVSATKWVTELEVTRFDRATAYWTERGWAPLGPVKTQSRIEVPASGARLAAGQVVVAGTAWAQHRGVTRVQVQVDDGPWADATLADEAGIDSWRQWRYAWEATPGEHRLRVRAADPEGTQTGAVADVVPDGATGYHEIRCEIA
>NC_015671.1|WP_013883065.1|1119730_1120177_-|HIT-family-protein
MTTLFTRIIDGQIPGRFVWADDVCVVFTTIAPITDGHALVVPREEVVEYTAASDALLGHLAVVARTVGSAQQSEWGAPRAAVLVAGFEVPHLHLHVLPAWDEASLSFRNARSDVPAAELDAAAERLRDALRAAGHGAHVPAALTSPAL
>NC_015671.1|WP_013883066.1|1120190_1121414_-|ABC-transporter-permease
MSAPTPHPSATRDLGTAAAIRLVAGREISTRLRSKAFVWTTVLFVGAVVLGGVLLNLIGGKSDPTPVGFTPDAAASAPAFEATAAGMGVDVETHEVAADAVEQGLRDGDVDLVVTSTEGTFDVHVESSVGESMRPVLAAFAQQLALASAVTELGGDPGDVAGQVAQAAPHVTALDPEPARDGGQIVAGYLAGILLFIALMTAGQLVAQGVVEEKTSRVVELLLATLRPAQLMAGKVLGIGAIGLLQVGLVVAAGAGTASALGLLDSSSLDLGSTALWALVWFVVGFGMYALVLGALGALVSRQEDIGSVIGPVTTLMIVPYVLGISVLPWDPTNSLATWLSYVPFCSPMLMPIRIALGAAELWEVLLALGLSVALVPVLVWLAGRIYSGAVLHSGGRMKLKDALARA
>NC_015671.1|WP_049785605.1|1121410_1122352_-|ABC-transporter-ATP-binding-protein
MPALSIASLSKSYGPVRALRDMSFEVHAGEIFGFVGSNGAGKSTTMRIVLGVLAADSGEVRWDGRPLDLAARRRIGYMPEERGLYPRMKVGEHLVYLARLHGMDKVAATRAMEHWTQVLGIDGRRGDEVLKLSLGNQQRVQLAAALVHGPDILVLDEPFSGLDPVAVDVMSQVLRDQAAAGVPVMFSSHQLELVERLCDRVGIVRAGSMVASGGIDELRRTTERRWAVDGAPPDRWLPHVPAARLVERDGDRTVVEVADPDAVDVDQQLLAAALAAGPVREFSVVRPSLVELYRHVVSADDVPAPTTGTEVPA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_015671_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015671_3

3236274-3236381

Orphan

Consensus_repeat	Method
CCGCCGAGGATGTCCTCGAACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015671_3

>merge|NC_015671|3|3236274-3236381|CRISPRCasFinder
CCGCCGAGGATGTCCTCGAACCCGGCCGCACCGCCCGGTGCGTACCGGACGCGGCCGCCGCCACCCCCGCCGCCGCCGAACATGCCGCCCAGGATGTCCTCGAACCCG

>NC_015671|3|3|3236274-3236381|CRISPRCasFinder
CCGCCGAGGATGTCCTCGAACCCG	GCCGCACCGCCCGGTGCGTACCGGACGCGGCCGCCGCCACCCCCGCCGCCGCCGAACATG
CCGCCCAGGATGTCCTCGAACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015671.1\|WP_081465442.1\|3245750_3248888_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197757
NC_015671.1\|WP_013884939.1\|3224716_3225589_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187578
NC_015671.1\|WP_013884942.1\|3229410_3230238_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|366444
NC_015671.1\|WP_013884943.1\|3230234_3231206_-\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|130256
NC_015671.1\|WP_013884952.1\|3242964_3244047_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NC_015671.1\|WP_013884946.1\|3235212_3235641_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NC_015671.1\|WP_041574224.1\|3226183_3229429_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226418
NC_015671.1\|WP_013884945.1\|3233675_3235184_-\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212658
NC_015671.1\|WP_041574817.1\|3225789_3226137_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_015671.1\|WP_013884958.1\|3256336_3257482_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NC_015671.1\|WP_013884938.1\|3224001_3224250_-\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|131249
NC_015671.1\|WP_169315164.1\|3244024_3245539_-\|DUF1998-domain-containing-protein	unknown	unknown	gnl\|CDD\|378167
NC_015671.1\|WP_013884948.1\|3236687_3237314_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NC_015671.1\|WP_013884955.1\|3248923_3250660_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350690
NC_015671.1\|WP_013884937.1\|3223514_3223931_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179603
NC_015671.1\|WP_013884956.1\|3250656_3255300_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223989
NC_015671.1\|WP_013884949.1\|3237310_3239158_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_015671.1\|WP_013884951.1\|3242394_3242655_-\|hypothetical-protein	unknown	unknown	unknown
NC_015671.1\|WP_041574820.1\|3255782_3256160_-\|very-short-patch-repair-endonuclease	unknown	unknown	gnl\|CDD\|238136
NC_015671.1\|WP_013884944.1\|3231316_3233599_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|226702

Protein	Function_ID	Function_description	E-value
NC_015671.1\|WP_081465442.1\|3245750_3248888_-\|hypothetical-protein	gnl\|CDD\|197757	smart00490, HELICc, helicase superfamily c-terminal domain.	5.55527e-06
NC_015671.1\|WP_013884939.1\|3224716_3225589_-\|SDR-family-oxidoreductase	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.73478e-87
NC_015671.1\|WP_013884942.1\|3229410_3230238_-\|ABC-transporter-permease	gnl\|CDD\|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	2.26998e-23
NC_015671.1\|WP_013884943.1\|3230234_3231206_-\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	5.19049e-123
NC_015671.1\|WP_013884952.1\|3242964_3244047_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	7.14106e-72
NC_015671.1\|WP_013884946.1\|3235212_3235641_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	2.4234e-39
NC_015671.1\|WP_041574224.1\|3226183_3229429_+\|transcriptional-regulator	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	1.63747e-32
NC_015671.1\|WP_013884945.1\|3233675_3235184_-\|carbohydrate-kinase	gnl\|CDD\|212658	cd00366, FGGY, FGGY family of carbohydrate kinases. This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity.	4.32943e-58
NC_015671.1\|WP_041574817.1\|3225789_3226137_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.71635e-33
NC_015671.1\|WP_013884958.1\|3256336_3257482_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	7.59426e-69
NC_015671.1\|WP_013884938.1\|3224001_3224250_-\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	5.7309e-34
NC_015671.1\|WP_169315164.1\|3244024_3245539_-\|DUF1998-domain-containing-protein	gnl\|CDD\|378167	pfam09369, DUF1998, Domain of unknown function (DUF1998). This family of proteins are functionally uncharacterized. They are mainly found in helicase proteins so could be RNA binding. This family includes a probable zinc binding motif at its C-terminus.	1.45428e-10
NC_015671.1\|WP_013884948.1\|3236687_3237314_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	2.10267e-34
NC_015671.1\|WP_013884955.1\|3248923_3250660_-\|AAA-family-ATPase	gnl\|CDD\|350690	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.83787e-25
NC_015671.1\|WP_013884937.1\|3223514_3223931_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	9.26854e-84
NC_015671.1\|WP_013884956.1\|3250656_3255300_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.20116e-40
NC_015671.1\|WP_013884949.1\|3237310_3239158_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_015671.1\|WP_041574820.1\|3255782_3256160_-\|very-short-patch-repair-endonuclease	gnl\|CDD\|238136	cd00221, Vsr, Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosphodiester backbone. Vsr endonucleases have a common endonuclease topology that has been tailored for recognition of TG mismatches.	5.85485e-33
NC_015671.1\|WP_013884944.1\|3231316_3233599_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	1.78849e-148

>NC_015671.1|WP_013884946.1|3235212_3235641_-|helix-turn-helix-transcriptional-regulator
MQDDAPLFVISRAAELAGMHPQTLRQYDRLGLVSPRRTAGRGRRYSLRDVATLREVQRLSQDEGVNLAGIKRILELEAQVERLARQVDYLRSFVEPSRRVFTADPRGDVVATRRVPRTPRPQQAPRAIAAAGAVVLWRPTRD
>NC_015671.1|WP_013884945.1|3233675_3235184_-|carbohydrate-kinase
MLVVGVDVGTTNLKVALVDVEQARAVAVAAAPTPQPGDLSTVLAALLTRVLDGRPAPRAVGVASMAETGVPVGPDDEPRGAWLRWDAHRGDTHADALAARWGRAELFAATGVRASGKVPLATWAWLREHAPGWLHDDGRWAGAADLVVLALTGRLVTDHTLAGRTMAYRLGRPGRLPDAFDDELLAGVGLAARHVPRVLAPGQTVPVRPGPATADLPPGIPVTVAGHDHAVAAFAAGVRQPGRVADSLGTAEVVCTVLEGDPAPDPVAAAGMSLVRTVRGDLPALVAGTSSAGGAVAWWLATYAGDLADDERAHLLAAASDARDDDWWRALRTQEDAFLLLPSVAGRQTPAPDPGARPRPVGRVPADPVAHLRGLLVGLALQARWMLDVQAELAGGASRWDTDVRLLGGPAHANPAWTRLKGMVTPGPVHLVLEREPVAVGAALLAAERAGLVDDAAVTAAVPVEEPAAVSVGGAAALRPGPGPWLDADRLLTRFVDAATHA
>NC_015671.1|WP_013884944.1|3231316_3233599_-|SpoIIE-family-protein-phosphatase
MGEAGPDASLLAPGEPVDLDNCAREPIHVPGSVQPHGVLLAVSEPDFTVEHVSQNVVDLLGVQVEDALGARLEHVLGTEAAELVRAHVRTFGNLRQRNPIVVPARTPRGRVELDAVLHRVAVADRTLLVVELEESTGPRPFSFPNTYQAVRDAMERLSASGSLTELYDVAAQEVRTLTGFDRVMIYRFDAEYNGEVVAEARRADLNSFLGLHYPASDIPPQARALYEQNWIRLIADVGYTPSRIVPGLDPGSGQPLDLTHSVLRSVSPIHLEYLGNMGVAASMSISLLRDGRLWGLIACHHYSGPHHPPFGVRAAAEFLGSSLSLRLVARAEEDELQAALAAEATLVQLLIASRDADRTLAEALVGRSRSDVSLRTLVPAHGVVVLGDGQRQAEGEVPDDLAVLTTWLAEQATDVTARTALADQEPDLAATLPGVAGLLAVRLPEDRVIVWFRHEAVRDVSWGGDPQNKAIARREGDTVRLSPRKSFEKWTQTVRGQCTPWTPQELRSAEDLRRRLLETLLLRTRWALTSAETVQRSLLPATLPELDGWQVHARYVPAPGGRVGGDWYDALTLPDGRLAVVVGDVAGHGLPAAAAMGQLRNALRAFLLRGDSPAQALRWTDVVARRTMATDMATVVVAAVDRATGDVELAIAGHPRPLLLDAVGGAELVETRVDRPLGVGSGEPPTHRLRIEPGGGLVLYSDGLVDSRSTTLRAGLARLVRAFQREDPTRPVHIDHVLRECTDPSSVDDVTLLLLCRDLD
>NC_015671.1|WP_013884943.1|3230234_3231206_-|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein
MTTDLVIEAEGLVKHFGETKALQGVDLVVPRGTVLGVLGPNGAGKTTAVRILSTLLQPDAGQARINGLDVVRDAERVRHMIGLTGQYASVDEDLTGRQNLVLFGTLLDLGRAGARARAVELLEWFDLTQAADRPAKTYSGGMRRRLDLAASLVGRPDVIFLDEPTTGLDPAKREAMWDVVRSLVTDGSTVLLTTQYLEEADALADEITVIDHGRVIAHDTPDGLKRIVGGQTLEVRPADPARLEETAQILTQVSTGTPADEIRKGMLAVPVTSDAAMTETVARLGAAGITVTELSLHLPSLDEVFFTLTGRPTADDPTTEVAA
>NC_015671.1|WP_013884942.1|3229410_3230238_-|ABC-transporter-permease
MSTATLDQRTQTPRTPAAVTHARPFPLLRHSAALTRRSLIKTWRTPEALIDVTLQPIIFLAIFVTIFGNAVAGSTGDYLQFLLPGVLGQTIAMGAIAIGVNLNTDMEKGIFDRFKSLPIPRSAPLLGAVSGDVVRYVIVTVVTLATGYAMGFRIATDPLQMIAGCLLAILFAVCLSWVSVWVGMLVRTSGAVQGVMFLLIMPLTFGSNVFVQTDDLPGWMQGFVDVNPLTHLVDSMRGLFLGTPLGDHVWWTLAWCVGLVAVFMPLAMRAYRRKV
>NC_015671.1|WP_041574224.1|3226183_3229429_+|transcriptional-regulator
MHVTTLGPLAIDGHPVRGERLAAVVRELVDARGRAVSVGALVDAVWDGAPPDDATGAVQALVSRVRRLGLAVQSTPGGYRVPADDVRVDADEARDLLETAHHALRAGDVPATVAAAAQARALLPAVPDTPVAVHLLADAAAVAAQVALRTGGPFDETDLRTLAAGTPPDEPSVAMLVRVLAAQGRDAEALDVVERLRTELVERYGTDPSPVVAQVHLALLRGELAPVRPAAPAPAAADALPAAWRRPAAPLVGRAADVDAVLDGLATARVVTVVATGGAGKTRLATEVARRVGDRPGRTVHVVELAGLRSPEEVLPAVVAVLGGAETVGARTDVTAERRVLDPVGRLRAATQELDGLVVLDNCEHVLDAAADVVAMLLSVAGPELAVLATSRAPLGLMGERVHRLGTLPDDDALALLRDRARAGRADLPWDDERALALCHRLDNLPLALELAAARLRAMPVQDVLDGLHDRFALLDDALRGLPERHASLWAMVDWSRALLDADDRDLLQRLSVVPAAFTAATAAAVAGRDEAAVRRGLAVLVDQSLLALDDDGVHPARYRMLETVREYGDARLQAAGDRAAAMRGLVAWAAAEAVDLAARLVGPGQLDALAACARDQETFVGALRWALAHDDEAAAVDLCAALFHWWTIRGLHVETVTWATRLLAADDPARRRTSALYAARRDGDDSAPHGDRLTAAAVHAAVNSGVTASNRLAALAGRVLRGVRGEQAAQVGDRMRAVSTALPAMTFSDPARAELAAAELARHGDPWVRGLGTFLGAAVRENAGDPASCVPDALAAYALFRQAGDHWGMGMTAQAVAQWSARLGGEDVMTWLERAIEHLELVGALLDARSLRLLLDVQHALTGQEDRLEALRELAAAPHLEPMDRAQALLGLGQVLLGRRERDEAAQHVLRAVDQLGDDEGGAPQSRTVLRVAAAVLLLHAAVPDGWPDEPGGVTGVAGMSPDDVQARVVEIVTPTAADVARMRDMPVIGAYALGTAELAAFRGDAATAAELWSLGTRLGATIAWITSSLDPETSLTVRLTGPAATARVGDLRALPIQQVTARIETIVNDVLGARQTLRR
>NC_015671.1|WP_041574817.1|3225789_3226137_+|helix-turn-helix-transcriptional-regulator
MLAAGRLPAACPSRIVLDHVTSRWGVLVLVALSQGSLRWGELRRTVEGVSEKMLAQTLRTLEADGLVERTVTGTVPPRVDYALSELGHGLTAHLLPLMGWIGDHADAIVGRSAAT
>NC_015671.1|WP_013884939.1|3224716_3225589_-|SDR-family-oxidoreductase
MSVVVTGATGHLGRLIVEGLLEAGVAPDQVVAGGRRTKRLADLAGRGVRVVEIDYARPETLAAALAGADTLMLVSGSEVGQRVAQHGAAIDAARAAGVRRIVYTSAPHADATELVLAPEHRATEELLTASGLVVTVLRNNWYTENYVPTLQQAAATGQVVASAGDGRVASASRADFAAGAVAVLTSAEHDGRTYELTGDVAWTHDELAAAVGEVLGRPVTYVRATPDEQRAGLLAAGLHEGTAGFLVALDQNIAAGTLADVTDTLRTLIGRPTTPLVDGLRAAWTATTAS
>NC_015671.1|WP_013884938.1|3224001_3224250_-|glutaredoxin-like-protein-NrdH
MTITVYSKPACVQCNATYRALDKLGADYTVVDISEDADARDYVMSLGHLQAPVVIVDGDHWSGYRPDRIKALAERLEAVTVA
>NC_015671.1|WP_013884937.1|3223514_3223931_-|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MSSLVYFSSASNNTHRFVEKLGLPAQRIPLRPTEPFLHVTEPYVLVVPTYGGGNEGGAVPRQVVKFLNDAANRALIRGVIAAGNTNFGEAYCIAGEIVAAKCRVPYLYGFELMGTNEDVLRVRDGLERLWQRQSLISA
>NC_015671.1|WP_013884948.1|3236687_3237314_-|nucleotide-exchange-factor-GrpE
MTDQPTTPGPDEGPGESPRFTDKRRIDPETGELREPTAEEAVIAEAEAAAAAGQQEAAPAGAAEQLAAERLEELQRANAAYYNLEQQYSAYVKRSKTEAGAAHDRGVASVAEALIPVLDDIELARQHGDLTGPFASIAEKLEGTLNRFGVERYGAVGEEFDPAVHEALMHSHSADVSVATVQMVLQPGYRTAERVLRAARVAVVDPEA
>NC_015671.1|WP_013884949.1|3237310_3239158_-|molecular-chaperone-DnaK
MARAVGIDLGTTNSVVSVLEGGEPTVIANAEGSRTTPSVVAFSKTGEVLVGEVAKRQAVTNVDRTIASVKRHMGTDWTVEIDDKKYTPQEISARVLGKLKRDAEAYLGEPVTDAVITVPAYFNDAERQATKDAGAIAGLNVLRIINEPTAAALAYGLEKGKEDELILVFDLGGGTFDVSLLEVGKDDDGFSTIEVRATSGDNRLGGDDWDNRIVDFLVAEVKNQGVDLSKDKIALQRLREAAEQAKKELSSATSTNISLQYLSMSENGPIHLDTKLTRAKFQEMTKDLLDRTKAPFNAVIRDAGIKLSDIDHVVLVGGSTRMPAVTEVVTELTGGREPNKGVNPDEVVAVGAALQAGVMKGDRKDVLLIDVTPLSLGIETKGGVMTKLIERNTAIPTKRSEIFSTAEDNQPSVLIQVFQGEREFARDNKPLGTFELTGIAPAPRGMPQIEVTFDIDANGIVHVSAKDRGTGKEQSMTITGGSALPKEDIERMVREAEEHASEDKKRREDAEARNSAEQLVYSTEKLLVDNADKLPEEVKTEVQAKVGELKTALEGTDVEDVKAKTAALSTAAQKIGEAIYSQAQAEQSAPADAPADSSDEDVVDAEIVDDEDDKK
>NC_015671.1|WP_013884951.1|3242394_3242655_-|hypothetical-protein
MAVRDVLRDWLVEALESLGGSGSVLEVSQEVWRLHQREIESAGDLLYTWQYDLRWAATVLRKTGVLADNSRGEPWTLARAGRARVE
>NC_015671.1|WP_013884952.1|3242964_3244047_-|DNA-cytosine-methyltransferase
MPPSSRRDAVAGENVVPVLDLFAGAGGLTAGFVSTGRFRSVGAVERDPHAAATYALNHGDHVVVGDIAQYAEGSFPRAEVVLGGPPCQGFSLLGKRDSDDPRNRMWQHYLRVLERVRPAFFVMENVPRFLESPEYQALAAEASRGGRLQGWSLEAWVLNAADHGGAQNRRRAFLVGRRAGTRPLGRPDLDARRTCLADVLADVDVRPSAARLPESWVEVNGALHPGAFKSHDLHFMPAATPLSRARYESIPYGGSRRDLSDHLLAECWRGNTRGASDVMGRLVWERPAVTVRTEFYRPEKGRFLHPTEHRPITHLEAARIQGFPDDYLWVGTRASIARQIGNAVPPPLARAVAGRLAEHL
>NC_015671.1|WP_169315164.1|3244024_3245539_-|DUF1998-domain-containing-protein
MRFPLAHYCPKCHVLGPLNRLQDQQTMWCKQCQGARLVPSRFVACCDAGHIEDFPYYQWVHRGEEAESQSADEHRLSLRMLGRSSSLSDIVIGCSCGVQAKTLNGAFGRNALPPVRRCSGRRPWLETDASDCDRPLRALQRGSSNVWFAAMRSTISIPPWSTAAASFVDRHWMVLEHLPEDALSATLSRMVENSPGVTVDAVRAIIAQRRGLAARSALTEAELRHDEYNALCAGTGPGASLDTFICEAQEVDASVADEVVQVSAVHRLREVRALAGFSRVTPAVPRVDDSGEDVGAAGLSPLSEAPLPWLPAVEVHGEGVFVRLREDRLAEWERTAAARGRADAITMAQARRDRAAGRPAAPPVAPRTVVLHTLAHMLVNELSLHAGYPASALRERLYAAPGQAGILVYTASSDSAGSLGGLAALAKERVFAPIFRTAIEHGRWCSSDPVCAESRGSGTDNLNLAACHACVLLPETSCEHRNVLLDRVAVVGSQEVPDAALFPA
>NC_015671.1|WP_081465442.1|3245750_3248888_-|hypothetical-protein
MVAALERDLLGTAEDDHLDEPPLDRFIVGILHPPSDIEIEDTAAPPEVETGTQVDADVDAGVSLSRMRAPSSMGLTFAVDPSTTAEVVVTVRADRYVPEVSADVVDEKPTEASAEVEAVDRVRSSRPRSWNRVEAVDRSWVFDTTVPDHHRVGVVDGLELRVVVRPADGADVSITAALVNTFRGEMPHGTDEFAWFRPVIRVEAVGGSFSERRGPARSTRGSEEASAELLYRDAVAVAVGHGCAVTWDAIPTRCLETTFLPRQEVRVSRAERAELRGRFGMATLASTDDRSALHDLVDAYDEWVSASGARVPALAEDIRGTAEDHLRTARDAAHRMRRGIEVLDADANAATAFRVMNEVMQEQRARQEMVRSGGETPPTAEQQWRPFQMAFILLNLEGLVDQKSDEREIADLLWFPTGGGKTEAYLGLIAFVLALRRLRGGKGGGGGVGVVMRYTLRLLTLQQFERAAGLVCALERWRSRALPDAEPVTIGLWVGRSGTPNTHEAASAALKCLRDGRPTGDHGNPRQLLSCPWCGATLSHAAYSLDRGVPRRLRVRCPGDRCEFRDGLPVLLVDEDVYDVRPSLLIGTVDKFAMMAWNPKVRRILGSDGAVEPPDLIVQDELHLISGPLGTLVGLYETAVDAAATGVARPKIVASTATIRRADEQVRAVFDRETRQFPPPGIDPGDSFFAVEAPAEELPARQYVGVLAPGTSHATLLVRSYAALLQAGKDLDATDEVKDAYWTLLGYFNSLRVLGAAFIQSIDDVPARIPVVARRGGSEAREINEPKELTSRVPSDEVPQRLKELSTSLGGDDCQDIVLATNMISVGVDVDRLGLMVVMGQPQTTSEYIQATSRVGRRHPGLVVTLYNSARTRDLSHYESFLPYHRALYRQVEATGATPFAPRAVDRGLHGVLVSLVRLLVPGASEDTAVAAVTDEAATESIREIVRERVRDVAPEEEQRVLDALDALVENWRDALDDERVQKYASWSAPMGALIVPAGGSPFGRQENQLDQFPVSEPAWPTLTSLRNVDATSSLYQTRRKHSGQ
>NC_015671.1|WP_013884955.1|3248923_3250660_-|AAA-family-ATPase
MSAPLLDLSQRAAVEVDVSVRQVVIAGPGSGKTEVVSALVEHLVVEEQVDPEISLLVLSFSRAAVHAVTRRLRAADVQAVAAVRTIDSLAQRIVREAYGEEIAGRNVFDRRIARATQALQAGAWDRVRELEHVVVDEVQDVVGLRAEFVSALLAALGDGAGFTLLGDPAQAIYDFQLTPEHPTTSGELVARVEAMPGVQQRVLLGSYRAGTRDAAAAVALRELGDPSLNGAEDDICDFLLGVTPVDDEGIRELARHQGGGLVVLTATNGQALMEAEDLWKQGVPVQVRRPLTAPVTDAWVADVLGRAGSWDLASLTEAMGDAGIAVERWRGVRGWGRPGSRAVETREVARRLRSGFVPAELQPKDPDVPVVSTVHRSKGLEYDTVVFAQYDDRRDTDEDPAQMARVQYVALTRARFRLLRIERNRYPHLVRRDERTGRWLRCWQRRGSVKAVEIRGDDLERTRPPGEDVARAQAHLRSRVRPGDPVTLVHDWTSVDTHFWDVKHEGVTIGRTTAAFGEQLRSLLGGNLALDLRGVHVECVETVAGDPVDDAAGGIGKYGMWLGVRLVGLAVREWKDEL
>NC_015671.1|WP_013884956.1|3250656_3255300_-|DEAD/DEAH-box-helicase-family-protein
MAWNPSGGNLADVVRAQTAACLEVYARDAKRIEEDANNERRIAEGGYRDRQLHELVQNAVDAARDGGGRIEVRLARDTLYVANDGEPFTAQGVEALMASDLSSKADDRIGRFGIGFKSVLAVTAEPRVYSRSVSFAFDRAWSESTIRAAGLTAPRYPVMRVARLEDPRAAAERDPVLAELMSWATTVVVLPALTQLGSLKRDLLAYRGELLLFSRHIQDLRLRIDGMADQRVTANERAGGLVDLVSEEGVSTWKVLSTVWAPTAEARADGGRIADRERVRLDWAMAVTGKERTRVGEFWAYFPTEARTTMSGIINAPWRLSDDRTNLLQGAFNRGLLEEVFPRLLASNVAELVDEDDPASFLDLLPARGKEGRSWADDVINEPVFDALRRTACLPDVTGRLRLPSELDFAPEGIEPAWVDEWSRAPQAPTANWVHPHTLSTPERRLKVRRLADPEGKRNSTAKAWVEALARQGDLESCAAAIQLAGRIVREAGPQAAGNHTKAQIVEDIRRARIVPLEDGGLAPAVKGRVFIRSGPEDAAGVFVEPRLVDIPGIVEALRDLGVTVLDKRAELEAAVLDAARHGKDAWRRVWAITRQVSRDVAREVLETGASGPVQAFIRVRTAAGGWVGLDDALLAGAVVPSHGRRDAQFLIDPVFHAPDVELLRELGAVSEPQWRPSGQVRSGWLADYREAARVAFRSRNAIDVDSSEILVEDRMVLSPLGILDGLSPEGRLELTRSVLAKGAIPSWRVRHATDSRLKAIHYRPPEIWMLRRRGMIDSSMGPMVPRDVLVRGDDHRPDVFPVAMDLPVELAEQLGARTSLSAYGADQWVRLKQIADSWPEDERRYEFYTYLPGRLEAQELVVRVGSRRERVHARNVGVTGSLAVYESMLEAQVPAMVVADGDVERFVEHWEMPKGKDLLREEVVAEETGEAVYLTDEFPPLRNHPSLGAEDLDVKLQRCSRIVQLVATPQGQVERPIQQRREPGRVLVTATEPSKTLLQVSHALKLEMSSQDVERVLRTMEDMRASQHKVAVRRAARTSPEHGLVTAVGAEALRAQVPRQALEMLSTGGDLEDEELARLVLSVHGVGVLRVLRAALDEKGLEPPREFAGRQKERKWVADLGLPAEWAGFPARESPAREAIEGPVELKPLHDYQIRVTERIRSLLLGIGRQRGVVSLPTGAGKTRVTIQALVEEIARGRLAGPILWIAQSEELCEQAAESWTYVWRALGPGPMVLGRLWGPNEVEEEPDGTQVVVATDAKLKSIIDTRSEQYTWLREPTVVIVDEAHTSVSPTYTSIFDWLGRGAKATEAKPLIGLTATPFRGTSDEETQRLVKRYDSHLLDDGVLGEDPYRTLREMGVLAHVEKRTLDGATVDFTEAELDEITSMGRFPRRREQQLGDDHDRNRRIVESILDLPDDWPVLLFAPSVENARALAALLSHRGVPAVSISSGTETPARRHYIDQFRKGSIRVLTNYQVLTQGFDAPAVKAVYVCRPTFSPNVYQQMVGRGLRGTLNGGSEKVLIVDVEDNLSMYGDQLAFRAFEKLWRQ
>NC_015671.1|WP_041574820.1|3255782_3256160_-|very-short-patch-repair-endonuclease
MSRQHRRDTSPELALRRALHRRGLRYRVDATLPGIPRRRADVLFPRARLVVFVDGCFWHACPLHATQPAANGEWWRAKLEANVARDRDTDARLTASGWRVLRFWEHADMEAAAGAVETAWLAGRE
>NC_015671.1|WP_013884958.1|3256336_3257482_+|DNA-cytosine-methyltransferase
MTTGTPPAAETLTVLDLFAGAGGLSAGVTSPGGFRSIAAVEMDRAAAATYKLNHPGTEVFAGPIQEWLDQYDVPSVDVIVGGPPCQGFSTLGKQDAEDERNALWYEYAKTIVRAQPKWFVVENVASFMKSEQFALFRRATSPGGMLEDWSFSARVVNAADYGSFQARKRAILIGHREDVPAPGWPAPTHVGRHRTVAEAIRGLPEPETDVWPTRTVTVNGDTMPGGLATDELQIGRHYRQLSLERFAVIPYGGNRFDLPDDLKAPCWRKHTSGSGDVMGRLHWDRPSVTIRTEFFKPEKGRYLHPESHRVITHREAAILQGFPGDYVWAGTREQVARQIGNAVPLELGAAVGRAILAAHQGWPAEGEGLFATRWGLIGSAV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1435726 : 1472003

Gordonia_phage(38.89%)

integrase,capsid,tail,portal,terminase

attL 1446422:1446437|attR 1473993:1474008

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013883330.1\|1435726_1439641_-\|tail	phage tail tape measure protein	I3NL90	Bifidobacterium_phage	4.8e-80	33.0
WP_013883331.1\|1439685_1439856_+	hypothetical protein	NA	NA	NA	NA
WP_013883332.1\|1439852_1440080_-	hypothetical protein	NA	NA	NA	NA
WP_013883333.1\|1440229_1440754_-	hypothetical protein	NA	NA	NA	NA
WP_013883334.1\|1440846_1441371_-	hypothetical protein	NA	NA	NA	NA
WP_013883335.1\|1441372_1441600_-	hypothetical protein	NA	NA	NA	NA
WP_013883336.1\|1441661_1442063_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013883337.1\|1442059_1442446_-	hypothetical protein	NA	NA	NA	NA
WP_150104678.1\|1442442_1442808_-	hypothetical protein	NA	NA	NA	NA
WP_013883339.1\|1442867_1443296_-	Phage protein Gp19/Gp15/Gp42	A0A2P1CJ33	Mycobacterium_phage	5.5e-14	44.1
WP_013883340.1\|1443312_1443747_-	hypothetical protein	A0A166XYR2	Gordonia_phage	3.3e-06	53.2
WP_013883341.1\|1443830_1444850_-\|capsid	major capsid protein	A0A166XYQ6	Gordonia_phage	3.4e-78	48.3
WP_013883343.1\|1445279_1445897_-	hypothetical protein	NA	NA	NA	NA
WP_013883344.1\|1445965_1446973_-	hypothetical protein	A0A1C9EHV4	Gordonia_phage	9.5e-33	35.0
1446422:1446437	attL	NA	NA	NA	NA
WP_013883345.1\|1446941_1448321_-\|portal	phage portal protein	A0A2H4JAT8	uncultured_Caudovirales_phage	9.2e-71	38.1
WP_013883346.1\|1448331_1450059_-\|terminase	terminase large subunit	A0A2H5BLT3	Streptomyces_phage	1.5e-179	56.2
WP_013883347.1\|1450027_1450516_-\|terminase	phage terminase small subunit P27 family	A0A2P1JSY0	Streptomyces_phage	6.2e-38	51.2
WP_013883349.1\|1451412_1452591_-	RtcB family protein	G8I4I6	Mycobacterium_phage	7.0e-120	59.7
WP_013883350.1\|1452605_1453442_-	hypothetical protein	NA	NA	NA	NA
WP_013883351.1\|1453438_1454644_-	HNH endonuclease	A0A1C9EHU5	Gordonia_phage	1.3e-57	50.9
WP_169315140.1\|1454748_1454922_-	hypothetical protein	NA	NA	NA	NA
WP_041574508.1\|1454918_1455218_-	VRR-NUC domain-containing protein	A0A1B1IPM4	uncultured_Mediterranean_phage	3.8e-14	44.2
WP_013883353.1\|1455277_1455793_-	hypothetical protein	NA	NA	NA	NA
WP_013883355.1\|1456792_1457284_-	hypothetical protein	NA	NA	NA	NA
WP_013883356.1\|1457276_1457429_-	hypothetical protein	A0A222ZPA7	Mycobacterium_phage	3.0e-07	59.5
WP_013883357.1\|1457425_1458004_-	hypothetical protein	NA	NA	NA	NA
WP_041574130.1\|1458397_1458616_-	hypothetical protein	NA	NA	NA	NA
WP_013883360.1\|1458735_1459206_-	hypothetical protein	A0A2P1JRA0	Mycobacterium_phage	1.2e-43	65.5
WP_049785533.1\|1459378_1460455_-	hypothetical protein	A0A159B6E8	Gordonia_phage	4.7e-22	38.3
WP_013883363.1\|1460451_1461312_-	hypothetical protein	NA	NA	NA	NA
WP_150104679.1\|1461308_1461677_-	hypothetical protein	NA	NA	NA	NA
WP_013883365.1\|1461673_1462564_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHY8	Gordonia_phage	1.1e-08	30.3
WP_081465421.1\|1462567_1462873_-	WhiB family transcriptional regulator	A0A0R8V0E7	Thermobifida_phage	1.5e-05	41.8
WP_013883367.1\|1462889_1464470_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	4.3e-32	31.8
WP_013883368.1\|1464526_1465060_-	hypothetical protein	NA	NA	NA	NA
WP_013883369.1\|1465056_1465452_-	hypothetical protein	NA	NA	NA	NA
WP_150104680.1\|1465557_1465848_-	hypothetical protein	NA	NA	NA	NA
WP_013883371.1\|1466320_1466773_-	hypothetical protein	NA	NA	NA	NA
WP_013883372.1\|1466769_1467378_-	hypothetical protein	NA	NA	NA	NA
WP_013883374.1\|1467814_1468042_-	hypothetical protein	NA	NA	NA	NA
WP_013883375.1\|1468038_1468299_-	hypothetical protein	NA	NA	NA	NA
WP_150104681.1\|1468434_1468908_+	hypothetical protein	NA	NA	NA	NA
WP_049785534.1\|1468928_1469306_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_150104682.1\|1469394_1469853_+	hypothetical protein	NA	NA	NA	NA
WP_013883378.1\|1469971_1470379_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_150104683.1\|1470392_1470827_+	hypothetical protein	NA	NA	NA	NA
WP_013883380.1\|1470884_1472003_+\|integrase	site-specific integrase	A0A1U9WS15	Gordonia_phage	3.3e-58	41.6
1473993:1474008	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015671

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection