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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_015672 Flexistipes sinusarabici DSM 4947, complete sequence 7 crisprs csa3,cas3,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,DinG,cas3HD,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,PrimPol,DEDDh,Cas9_archaeal,WYL,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,RT 1 3 14 0

Results visualization

1. NC_015672
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015672_1 1011494-1014319 Unclear NA
43 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015672_2 1428419-1430685 TypeIII NA
30 spacers
csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015672_3 1709332-1709573 TypeIII NA
2 spacers
csx20,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015672_4 1709819-1710226 TypeIII NA
5 spacers
csx20,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015672_5 1710472-1710885 TypeIII NA
5 spacers
csx20,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015672_6 1711131-1712652 TypeIII NA
20 spacers
csx20,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015672_7 1734298-1735756 TypeIII NA
19 spacers
PrimPol,cas1,cas2

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_015672_3 3.1|1709372|49|NC_015672|PILER-CR 1709372-1709420 49 NC_015672.1 1428384-1428432 0 1.0
NC_015672_3 3.1|1709372|49|NC_015672|PILER-CR 1709372-1709420 49 NC_015672.1 1426648-1426696 1 0.98

1. spacer 3.1|1709372|49|NC_015672|PILER-CR matches to position: 1428384-1428432, mismatch: 0, identity: 1.0

acatttgcgcaatatctcatcgcaaatgtttctgttcagagcttgctgg	CRISPR spacer
acatttgcgcaatatctcatcgcaaatgtttctgttcagagcttgctgg	Protospacer
*************************************************

2. spacer 3.1|1709372|49|NC_015672|PILER-CR matches to position: 1426648-1426696, mismatch: 1, identity: 0.98

acatttgcgcaatatctcatcgcaaatgtttctgttcagagcttgctgg	CRISPR spacer
acatttgcgcaatatcccatcgcaaatgtttctgttcagagcttgctgg	Protospacer
****************.********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_015672_1 1.30|1013411|36|NC_015672|CRISPRCasFinder,CRT,PILER-CR 1013411-1013446 36 MN693380 Marine virus AFVG_25M72, complete genome 41514-41549 6 0.833
NC_015672_7 7.6|1734706|38|NC_015672|CRISPRCasFinder,CRT,PILER-CR 1734706-1734743 38 NC_011412 Clostridium perfringens plasmid pCP8533etx, complete sequence 64601-64638 8 0.789
NC_015672_1 1.8|1011983|35|NC_015672|CRISPRCasFinder,CRT,PILER-CR 1011983-1012017 35 NZ_AP019741 Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA1, complete sequence 55619-55653 9 0.743
NC_015672_1 1.8|1011983|35|NC_015672|CRISPRCasFinder,CRT,PILER-CR 1011983-1012017 35 NZ_CP009218 Rickettsiales bacterium Ac37b plasmid 1, complete sequence 36470-36504 11 0.686

1. spacer 1.30|1013411|36|NC_015672|CRISPRCasFinder,CRT,PILER-CR matches to MN693380 (Marine virus AFVG_25M72, complete genome) position: , mismatch: 6, identity: 0.833

ttgctactgctgacatagttcctttaatgctcacta-	CRISPR spacer
ttgctactgctgatatcgttcctttaata-ttattag	Protospacer
*************.** ***********. *.*.** 

2. spacer 7.6|1734706|38|NC_015672|CRISPRCasFinder,CRT,PILER-CR matches to NC_011412 (Clostridium perfringens plasmid pCP8533etx, complete sequence) position: , mismatch: 8, identity: 0.789

--taatcaagaaataaaaaaggaggaaaaaaatgttttta	CRISPR spacer
ggtactta--aaataaaataggaggaaataaatgtttatg	Protospacer
  ** *.*  ******** ********* ******** *.

3. spacer 1.8|1011983|35|NC_015672|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019741 (Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA1, complete sequence) position: , mismatch: 9, identity: 0.743

cacttg---agatatttgaatattatttttattagaag	CRISPR spacer
---ttaaatagatatttgaatggtatttttattaatat	Protospacer
   **.   ************. ***********. * 

4. spacer 1.8|1011983|35|NC_015672|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009218 (Rickettsiales bacterium Ac37b plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

cacttgagatatttgaatattatttttattagaag	CRISPR spacer
taaagcagatattttagtattatttttattaatca	Protospacer
.*    ******** *.**************.  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 137532 : 181651 36 Burkholderia_phage(14.29%) protease,transposase,tRNA NA
DBSCAN-SWA_2 314982 : 365515 49 Planktothrix_phage(12.5%) tRNA,transposase,integrase attL 316672:316731|attR 352465:352527
DBSCAN-SWA_3 574600 : 632824 59 Burkholderia_phage(30.0%) transposase,tRNA,integrase attL 602523:602540|attR 636512:636529
DBSCAN-SWA_4 693978 : 747665 46 Acanthocystis_turfacea_Chlorella_virus(20.0%) transposase NA
DBSCAN-SWA_5 753901 : 823284 49 Burkholderia_phage(27.27%) holin,transposase,integrase attL 746503:746562|attR 809832:811168
DBSCAN-SWA_6 835023 : 892328 52 Enterobacteria_phage(16.67%) protease,transposase,tRNA,integrase attL 852305:852364|attR 884531:884590
DBSCAN-SWA_7 1332400 : 1403286 60 Planktothrix_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_8 1479959 : 1488827 9 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_9 1683055 : 1746318 51 Geobacillus_virus(14.29%) transposase,lysis,integrase attL 1740593:1740641|attR 1746476:1746524
DBSCAN-SWA_10 1771986 : 1829237 59 Bacillus_phage(33.33%) protease,transposase NA
DBSCAN-SWA_11 1835756 : 1882612 39 Tupanvirus(22.22%) transposase,tRNA NA
DBSCAN-SWA_12 1972004 : 2090160 110 Bacillus_phage(12.5%) protease,transposase,tRNA NA
DBSCAN-SWA_13 2170080 : 2229680 54 Tupanvirus(37.5%) protease,transposase,tRNA NA
DBSCAN-SWA_14 2418338 : 2496145 58 Staphylococcus_phage(18.18%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage