CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015672	Flexistipes sinusarabici DSM 4947, complete sequence	7 crisprs	csa3,cas3,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6,DinG,cas3HD,csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,PrimPol,DEDDh,Cas9_archaeal,WYL,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,RT	1	3	14	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015672_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015672_1

1011494-1014319

Unclear

Consensus_repeat	Method
CTTTAAATCCCAGAATTGGGAACTAAAAC	CRISPRCasFinder
CTTTAAATCCCAGAATTGGGAACTAAAAC	CRT
CTTTAAATCCCAGAATTGGGAACTAAAAC	PILER-CR

43 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_015672_1

>merge|NC_015672|1|1011494-1014319|CRISPRCasFinder,CRT,PILER-CR
TTTTCCTCCCCAGAATTGGGAACTAAAACAGGCTAGAACACTGGCACACAAACTTAACATTCCATTCTTTAAATCCCAGAATTGGGAACTAAAACCTGCTGTGTTTAAACCTTGTGCCATATCATACAAATCTTTAAATCCCAGAATTGGGAACTAAAACTAACATTATATTTCCATTATTAACTTGAACGCTATACTTTAAATCCCAGAATTGGGAACTAAAACTCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAACTTTAAATCCCAGAATTGGGAACTAAAACCACTTGAGATATTTGAATATTATTTTTTATTAGAAGCTTTAAATCCCAGAATTGGGAACTAAAACAACTCGTTCGTTGATTGTATAATCAACGTGAATAATCTTTAAATCCCAGAATTGGGAACTAAAACTCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAACTTTAAATCCCAGAATTGGGAACTAAAACCACTTGAGATATTTGAATATTATTTTTATTAGAAGCTTTAAATCCCAGAATTGGGAACTAAAACACATCACCGATCATCTACATGTACTTGCTCTTTATGCTTTAAATCCCAGAATTGGGAACTAAAACTCGCAAATCCATTGTCCATTCCGGTATTTGGAGACGCTTTAAATCCCAGAATTGGGAACTAAAACCCCTCCACTATTCTTTGTGTACCGTCTTCTGTAGTACTTTAAATCCCAGAATTGGGAACTAAAACCCAGTAGCGAACTGTTTTAACAATATTAACTTCACTCTTTAAATCCCAGAATTGGGAACTAAAACTTTTTTAGCGACTGCAATATGCCGAGCCCCTCCGTTCTTTAAATCCCAGAATTGGGAACTAAAACTTCTATGAGCTCCCGTTACAATTATATTCTTAAACCTTTAAATCCCAGAATTGGGAACTAAAACCTCTGCTGTATCTGGTACATATACTGAAACATCAAGCTTTAAATCCCAGAATTGGGAACTAAAACAAACTGTCAATCTCTTGTCCACGTATATTAAATACGCTTTAAATCCCAGAATTGGGAACTAAAACGAGTTGGGAGAATATAAAACATTAGGTACTTATGAGCTTTAAATCCCAGAATTGGGAACTAAAACTTTTTCTCAAGATTTTGTGCGCTTCTGAGTGTTGCCCTTTAAATCCCAGAATTGGGAACTAAAACTGCCTTGTAAATCTTCTTCTGCTTCCGCCCTTTAATCTTTAAATCCCAGAATTGGGAACTAAAACCACTTTGTACGATATCGAATAATGCAGGATTCCGTTCTTTAAATCCCAGAATTGGGAACTAAAACTTCTCGTCTCACTTTTCTAGCCTCGCTCCATGTAATCTTTAAATCCCAGAATTGGGAACTAAAACCTGCTTGTGCTATTCTATCCCCTACATTTATTTTAACTTTAAATCCCAGAATTGGGAACTAAAACGCTGTCTTCTATAAAGCAGAACAAATGCCCGAAATGCTTTAAATCCCAGAATTGGGAACTAAAACTTTATGTAAACAATTGACTAAAATTGCTGAAAGAGTCTTTAAATCCCAGAATTGGGAACTAAAACGGAACACGTTTCATTGCGTGTTCCTGAATCAAGCGACTTTAAATCCCAGAATTGGGAACTAAAACGTTGAAGGAATTTTCGGTAAACTTGACGGCATTTTTCTTTAAATCCCAGAATTGGGAACTAAAACAACATATTATGACACAAAAACCGAAGTAAGTTCAGACTTTAAATCCCAGAATTGGGAACTAAAACCGGGAGGAAGCCAAAAGCGATTCCTTTTTCCGCAAACTTTAAATCCCAGAATTGGGAACTAAAACTTTCTCACCTGCATATTTAATATAGTTCGTTTCATTCTTTAAATCCCAGAATTGGGAACTAAAACTTGCTACTGCTGACATAGTTCCTTTAATGCTCACTACTTTAAATCCCAGAATTGGGAACTAAAACTACAGAAGCGTCTCTAATACCGTATTGCTTTCTTATCTTTAAATCCCAGAATTGGGAACTAAAACTATCTTGCAATGACCCTAATGTACTTCAACAACAATCTTTAAATCCCAGAATTGGGAACTAAAACACTGCTAACGCTGAATATGAAGATACTGCTTTTATTCTTTAAATCCCAGAATTGGGAACTAAAACACTCTCTTATTTTCTTCGGGACTTTTTTCAAGTCCTCTTTAAATCCCAGAATTGGGAACTAAAACGTCTGAAATAGTAAAACTTATAAGGCCATTATCATACTTTAAATCCCAGAATTGGGAACTAAAACGCTATCTACCGTCCCTACAGATGATAAGTCAAGCTGCTTTAAATCCCAGAATTGGGAACTAAAACAGGCGTGCTGCCTTCCAAAGTGCTACTAAGAACGCCTTTAAATCCCAGAATTGGGAACTAAAACATTTTGTTAGGTCTGGAGATAAGGTAGAAGCTTTTACTTTAAATCCCAGAATTGGGAACTAAAACAATACCGTTTATCGTTACATCTATACTATCCAATTGCTTTAAATCCCAGAATTGGGAACTAAAACTGTTCATCTTGCCGTTGTTTACAGAATTCTGCAACTCTTTAAATCCCAGAATTGGGAACTAAAACAACAGCACCGACAATGCCTACCTCTCTAACATCAGCCTTTAAATCCCAGAATTGGGAACTAAAACCAGAGGACAGAAAGATGAAATACGTAGCAAGGGACTCTTTAAATCCCAGAATTGGGAACTAAAACTTCTTGAGCATTATTAAAGCGTGTGCCTCTGAAATTCTTTAAATCCCAGAATTGGGAACTAAAAC

>NC_015672|1|1|1011494-1014319|CRISPRCasFinder
TTTTCCTCCCCAGAATTGGGAACTAAAAC	AGGCTAGAACACTGGCACACAAACTTAACATTCCATT
CTTTAAATCCCAGAATTGGGAACTAAAAC	CTGCTGTGTTTAAACCTTGTGCCATATCATACAAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TAACATTATATTTCCATTATTAACTTGAACGCTATA
CTTTAAATCCCAGAATTGGGAACTAAAAC	TCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CACTTGAGATATTTGAATATTATTTTTTATTAGAAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	AACTCGTTCGTTGATTGTATAATCAACGTGAATAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CACTTGAGATATTTGAATATTATTTTTATTAGAAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	ACATCACCGATCATCTACATGTACTTGCTCTTTATG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TCGCAAATCCATTGTCCATTCCGGTATTTGGAGACG
CTTTAAATCCCAGAATTGGGAACTAAAAC	CCCTCCACTATTCTTTGTGTACCGTCTTCTGTAGTA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CCAGTAGCGAACTGTTTTAACAATATTAACTTCACT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTTTTAGCGACTGCAATATGCCGAGCCCCTCCGTT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTCTATGAGCTCCCGTTACAATTATATTCTTAAAC
CTTTAAATCCCAGAATTGGGAACTAAAAC	CTCTGCTGTATCTGGTACATATACTGAAACATCAAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	AAACTGTCAATCTCTTGTCCACGTATATTAAATACG
CTTTAAATCCCAGAATTGGGAACTAAAAC	GAGTTGGGAGAATATAAAACATTAGGTACTTATGAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTTTCTCAAGATTTTGTGCGCTTCTGAGTGTTGCC
CTTTAAATCCCAGAATTGGGAACTAAAAC	TGCCTTGTAAATCTTCTTCTGCTTCCGCCCTTTAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	CACTTTGTACGATATCGAATAATGCAGGATTCCGTT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTCTCGTCTCACTTTTCTAGCCTCGCTCCATGTAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	CTGCTTGTGCTATTCTATCCCCTACATTTATTTTAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	GCTGTCTTCTATAAAGCAGAACAAATGCCCGAAATG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTATGTAAACAATTGACTAAAATTGCTGAAAGAGT
CTTTAAATCCCAGAATTGGGAACTAAAAC	GGAACACGTTTCATTGCGTGTTCCTGAATCAAGCGA
CTTTAAATCCCAGAATTGGGAACTAAAAC	GTTGAAGGAATTTTCGGTAAACTTGACGGCATTTTT
CTTTAAATCCCAGAATTGGGAACTAAAAC	AACATATTATGACACAAAAACCGAAGTAAGTTCAGA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CGGGAGGAAGCCAAAAGCGATTCCTTTTTCCGCAAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTCTCACCTGCATATTTAATATAGTTCGTTTCATT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTGCTACTGCTGACATAGTTCCTTTAATGCTCACTA
CTTTAAATCCCAGAATTGGGAACTAAAAC	TACAGAAGCGTCTCTAATACCGTATTGCTTTCTTAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TATCTTGCAATGACCCTAATGTACTTCAACAACAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	ACTGCTAACGCTGAATATGAAGATACTGCTTTTATT
CTTTAAATCCCAGAATTGGGAACTAAAAC	ACTCTCTTATTTTCTTCGGGACTTTTTTCAAGTCCT
CTTTAAATCCCAGAATTGGGAACTAAAAC	GTCTGAAATAGTAAAACTTATAAGGCCATTATCATA
CTTTAAATCCCAGAATTGGGAACTAAAAC	GCTATCTACCGTCCCTACAGATGATAAGTCAAGCTG
CTTTAAATCCCAGAATTGGGAACTAAAAC	AGGCGTGCTGCCTTCCAAAGTGCTACTAAGAACGC
CTTTAAATCCCAGAATTGGGAACTAAAAC	ATTTTGTTAGGTCTGGAGATAAGGTAGAAGCTTTTA
CTTTAAATCCCAGAATTGGGAACTAAAAC	AATACCGTTTATCGTTACATCTATACTATCCAATTG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TGTTCATCTTGCCGTTGTTTACAGAATTCTGCAACT
CTTTAAATCCCAGAATTGGGAACTAAAAC	AACAGCACCGACAATGCCTACCTCTCTAACATCAGC
CTTTAAATCCCAGAATTGGGAACTAAAAC	CAGAGGACAGAAAGATGAAATACGTAGCAAGGGACT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTCTTGAGCATTATTAAAGCGTGTGCCTCTGAAATT
CTTTAAATCCCAGAATTGGGAACTAAAAC

>NC_015672|1|1|1011494-1014319|CRT
TTTTCCTCCCCAGAATTGGGAACTAAAAC	AGGCTAGAACACTGGCACACAAACTTAACATTCCATT
CTTTAAATCCCAGAATTGGGAACTAAAAC	CTGCTGTGTTTAAACCTTGTGCCATATCATACAAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TAACATTATATTTCCATTATTAACTTGAACGCTATA
CTTTAAATCCCAGAATTGGGAACTAAAAC	TCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CACTTGAGATATTTGAATATTATTTTTTATTAGAAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	AACTCGTTCGTTGATTGTATAATCAACGTGAATAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CACTTGAGATATTTGAATATTATTTTTATTAGAAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	ACATCACCGATCATCTACATGTACTTGCTCTTTATG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TCGCAAATCCATTGTCCATTCCGGTATTTGGAGACG
CTTTAAATCCCAGAATTGGGAACTAAAAC	CCCTCCACTATTCTTTGTGTACCGTCTTCTGTAGTA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CCAGTAGCGAACTGTTTTAACAATATTAACTTCACT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTTTTAGCGACTGCAATATGCCGAGCCCCTCCGTT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTCTATGAGCTCCCGTTACAATTATATTCTTAAAC
CTTTAAATCCCAGAATTGGGAACTAAAAC	CTCTGCTGTATCTGGTACATATACTGAAACATCAAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	AAACTGTCAATCTCTTGTCCACGTATATTAAATACG
CTTTAAATCCCAGAATTGGGAACTAAAAC	GAGTTGGGAGAATATAAAACATTAGGTACTTATGAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTTTCTCAAGATTTTGTGCGCTTCTGAGTGTTGCC
CTTTAAATCCCAGAATTGGGAACTAAAAC	TGCCTTGTAAATCTTCTTCTGCTTCCGCCCTTTAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	CACTTTGTACGATATCGAATAATGCAGGATTCCGTT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTCTCGTCTCACTTTTCTAGCCTCGCTCCATGTAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	CTGCTTGTGCTATTCTATCCCCTACATTTATTTTAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	GCTGTCTTCTATAAAGCAGAACAAATGCCCGAAATG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTATGTAAACAATTGACTAAAATTGCTGAAAGAGT
CTTTAAATCCCAGAATTGGGAACTAAAAC	GGAACACGTTTCATTGCGTGTTCCTGAATCAAGCGA
CTTTAAATCCCAGAATTGGGAACTAAAAC	GTTGAAGGAATTTTCGGTAAACTTGACGGCATTTTT
CTTTAAATCCCAGAATTGGGAACTAAAAC	AACATATTATGACACAAAAACCGAAGTAAGTTCAGA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CGGGAGGAAGCCAAAAGCGATTCCTTTTTCCGCAAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTCTCACCTGCATATTTAATATAGTTCGTTTCATT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTGCTACTGCTGACATAGTTCCTTTAATGCTCACTA
CTTTAAATCCCAGAATTGGGAACTAAAAC	TACAGAAGCGTCTCTAATACCGTATTGCTTTCTTAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TATCTTGCAATGACCCTAATGTACTTCAACAACAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	ACTGCTAACGCTGAATATGAAGATACTGCTTTTATT
CTTTAAATCCCAGAATTGGGAACTAAAAC	ACTCTCTTATTTTCTTCGGGACTTTTTTCAAGTCCT
CTTTAAATCCCAGAATTGGGAACTAAAAC	GTCTGAAATAGTAAAACTTATAAGGCCATTATCATA
CTTTAAATCCCAGAATTGGGAACTAAAAC	GCTATCTACCGTCCCTACAGATGATAAGTCAAGCTG
CTTTAAATCCCAGAATTGGGAACTAAAAC	AGGCGTGCTGCCTTCCAAAGTGCTACTAAGAACGC
CTTTAAATCCCAGAATTGGGAACTAAAAC	ATTTTGTTAGGTCTGGAGATAAGGTAGAAGCTTTTA
CTTTAAATCCCAGAATTGGGAACTAAAAC	AATACCGTTTATCGTTACATCTATACTATCCAATTG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TGTTCATCTTGCCGTTGTTTACAGAATTCTGCAACT
CTTTAAATCCCAGAATTGGGAACTAAAAC	AACAGCACCGACAATGCCTACCTCTCTAACATCAGC
CTTTAAATCCCAGAATTGGGAACTAAAAC	CAGAGGACAGAAAGATGAAATACGTAGCAAGGGACT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTCTTGAGCATTATTAAAGCGTGTGCCTCTGAAATT
CTTTAAATCCCAGAATTGGGAACTAAAAC

>NC_015672|1|1|1011560-1014319|PILER-CR
CTTTAAATCCCAGAATTGGGAACTAAAAC	CTGCTGTGTTTAAACCTTGTGCCATATCATACAAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TAACATTATATTTCCATTATTAACTTGAACGCTATA
CTTTAAATCCCAGAATTGGGAACTAAAAC	TCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CACTTGAGATATTTGAATATTATTTTTTATTAGAAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	AACTCGTTCGTTGATTGTATAATCAACGTGAATAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TCAAGATTTGCCCGTAAAGGTCTGCATCTTAACATTAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CACTTGAGATATTTGAATATTATTTTTATTAGAAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	ACATCACCGATCATCTACATGTACTTGCTCTTTATG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TCGCAAATCCATTGTCCATTCCGGTATTTGGAGACG
CTTTAAATCCCAGAATTGGGAACTAAAAC	CCCTCCACTATTCTTTGTGTACCGTCTTCTGTAGTA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CCAGTAGCGAACTGTTTTAACAATATTAACTTCACT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTTTTAGCGACTGCAATATGCCGAGCCCCTCCGTT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTCTATGAGCTCCCGTTACAATTATATTCTTAAAC
CTTTAAATCCCAGAATTGGGAACTAAAAC	CTCTGCTGTATCTGGTACATATACTGAAACATCAAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	AAACTGTCAATCTCTTGTCCACGTATATTAAATACG
CTTTAAATCCCAGAATTGGGAACTAAAAC	GAGTTGGGAGAATATAAAACATTAGGTACTTATGAG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTTTCTCAAGATTTTGTGCGCTTCTGAGTGTTGCC
CTTTAAATCCCAGAATTGGGAACTAAAAC	TGCCTTGTAAATCTTCTTCTGCTTCCGCCCTTTAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	CACTTTGTACGATATCGAATAATGCAGGATTCCGTT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTCTCGTCTCACTTTTCTAGCCTCGCTCCATGTAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	CTGCTTGTGCTATTCTATCCCCTACATTTATTTTAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	GCTGTCTTCTATAAAGCAGAACAAATGCCCGAAATG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTATGTAAACAATTGACTAAAATTGCTGAAAGAGT
CTTTAAATCCCAGAATTGGGAACTAAAAC	GGAACACGTTTCATTGCGTGTTCCTGAATCAAGCGA
CTTTAAATCCCAGAATTGGGAACTAAAAC	GTTGAAGGAATTTTCGGTAAACTTGACGGCATTTTT
CTTTAAATCCCAGAATTGGGAACTAAAAC	AACATATTATGACACAAAAACCGAAGTAAGTTCAGA
CTTTAAATCCCAGAATTGGGAACTAAAAC	CGGGAGGAAGCCAAAAGCGATTCCTTTTTCCGCAAA
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTTCTCACCTGCATATTTAATATAGTTCGTTTCATT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTGCTACTGCTGACATAGTTCCTTTAATGCTCACTA
CTTTAAATCCCAGAATTGGGAACTAAAAC	TACAGAAGCGTCTCTAATACCGTATTGCTTTCTTAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TATCTTGCAATGACCCTAATGTACTTCAACAACAAT
CTTTAAATCCCAGAATTGGGAACTAAAAC	ACTGCTAACGCTGAATATGAAGATACTGCTTTTATT
CTTTAAATCCCAGAATTGGGAACTAAAAC	ACTCTCTTATTTTCTTCGGGACTTTTTTCAAGTCCT
CTTTAAATCCCAGAATTGGGAACTAAAAC	GTCTGAAATAGTAAAACTTATAAGGCCATTATCATA
CTTTAAATCCCAGAATTGGGAACTAAAAC	GCTATCTACCGTCCCTACAGATGATAAGTCAAGCTG
CTTTAAATCCCAGAATTGGGAACTAAAAC	AGGCGTGCTGCCTTCCAAAGTGCTACTAAGAACGC
CTTTAAATCCCAGAATTGGGAACTAAAAC	ATTTTGTTAGGTCTGGAGATAAGGTAGAAGCTTTTA
CTTTAAATCCCAGAATTGGGAACTAAAAC	AATACCGTTTATCGTTACATCTATACTATCCAATTG
CTTTAAATCCCAGAATTGGGAACTAAAAC	TGTTCATCTTGCCGTTGTTTACAGAATTCTGCAACT
CTTTAAATCCCAGAATTGGGAACTAAAAC	AACAGCACCGACAATGCCTACCTCTCTAACATCAGC
CTTTAAATCCCAGAATTGGGAACTAAAAC	CAGAGGACAGAAAGATGAAATACGTAGCAAGGGACT
CTTTAAATCCCAGAATTGGGAACTAAAAC	TTCTTGAGCATTATTAAAGCGTGTGCCTCTGAAATT
CTTTAAATCCCAGAATTGGGAACTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015672.1\|WP_013886099.1\|1014454_1014736_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015672.1\|WP_013886105.1\|1020018_1021599_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
NC_015672.1\|WP_013886100.1\|1014739_1015729_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_015672.1\|WP_148255815.1\|1002286_1003291_-\|aminodeoxychorismate-synthase-component-I	unknown	unknown	gnl\|CDD\|235932
NC_015672.1\|WP_013886091.1\|1000363_1001401_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_015672.1\|WP_169310277.1\|1006271_1006487_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886096.1\|1006634_1007945_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|367293
NC_015672.1\|WP_013886092.1\|1001712_1002303_-\|aminotransferase-class-IV	unknown	unknown	gnl\|CDD\|235934
NC_015672.1\|WP_013886106.1\|1021595_1022333_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
NC_015672.1\|WP_013886102.1\|1016230_1018372_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707
NC_015672.1\|WP_013886097.1\|1008126_1009011_-\|transposase	unknown	unknown	gnl\|CDD\|376616
NC_015672.1\|WP_013886104.1\|1019090_1020026_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NC_015672.1\|WP_148255814.1\|1001495_1001699_+\|DUF3179-domain-containing-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886103.1\|1018374_1019094_-\|CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
NC_015672.1\|WP_013886107.1\|1022627_1023116_-\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	unknown	unknown	gnl\|CDD\|99873
NC_015672.1\|WP_013886095.1\|1004904_1006218_+\|IS1380-like-element-ISFsi1-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_015672.1\|WP_013886101.1\|1015732_1016227_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015672.1\|WP_013886108.1\|1023112_1024795_-\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|366057
NC_015672.1\|WP_013886094.1\|1003413_1004460_-\|homocysteine-S-methyltransferase-family-protein	unknown	unknown	gnl\|CDD\|236321
NC_015672.1\|WP_013886098.1\|1009416_1011162_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008

Protein	Function_ID	Function_description	E-value
NC_015672.1\|WP_013886099.1\|1014454_1014736_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.27974e-25
NC_015672.1\|WP_013886105.1\|1020018_1021599_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	1.62674e-19
NC_015672.1\|WP_013886100.1\|1014739_1015729_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	5.28446e-152
NC_015672.1\|WP_148255815.1\|1002286_1003291_-\|aminodeoxychorismate-synthase-component-I	gnl\|CDD\|235932	PRK07093, PRK07093, para-aminobenzoate synthase component I; Validated.	9.69874e-155
NC_015672.1\|WP_013886091.1\|1000363_1001401_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.50045e-121
NC_015672.1\|WP_013886096.1\|1006634_1007945_-\|ATP-binding-protein	gnl\|CDD\|367293	pfam03008, DUF234, Archaea bacterial proteins of unknown function.	1.32113e-16
NC_015672.1\|WP_013886092.1\|1001712_1002303_-\|aminotransferase-class-IV	gnl\|CDD\|235934	PRK07101, PRK07101, hypothetical protein; Provisional.	2.86831e-56
NC_015672.1\|WP_013886106.1\|1021595_1022333_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	1.51307e-25
NC_015672.1\|WP_013886102.1\|1016230_1018372_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	3.39151e-58
NC_015672.1\|WP_013886097.1\|1008126_1009011_-\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	3.13203e-06
NC_015672.1\|WP_013886104.1\|1019090_1020026_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.20796e-46
NC_015672.1\|WP_013886103.1\|1018374_1019094_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.08431e-13
NC_015672.1\|WP_013886107.1\|1022627_1023116_-\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	gnl\|CDD\|99873	cd06062, H2MP_MemB-H2up, Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.	1.43905e-55
NC_015672.1\|WP_013886095.1\|1004904_1006218_+\|IS1380-like-element-ISFsi1-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.30248e-25
NC_015672.1\|WP_013886101.1\|1015732_1016227_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.405e-67
NC_015672.1\|WP_013886108.1\|1023112_1024795_-\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|366057	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.	0
NC_015672.1\|WP_013886094.1\|1003413_1004460_-\|homocysteine-S-methyltransferase-family-protein	gnl\|CDD\|236321	PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed.	2.31e-48
NC_015672.1\|WP_013886098.1\|1009416_1011162_-\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	1.65314e-18

>NC_015672.1|WP_013886098.1|1009416_1011162_-|DUF262-domain-containing-protein
MSYETALKISDVINEIHRKKYLLPAIQREFVWSTYQIERLFDSLMRDYPIGSFLFWKVEKDKTSEYEFYEFLREYHERDKKHNPKANITGDEEITAVLDGQQRLTSLYIGLKGSFAYKLPRKRWDNDQAYPRRKLFLNLVSQSKDPDFEYEFAFLTKQESEKIDEEYFWFPVGEILNYKEPGKVNSYLLQNNVFQNFNKEKADFANHALFKLHATIHNQGSISYYQEKSQLLDKVLNIFIRINSGGTVLSYSDLLLSIATAQWESKDAREEINNFVDEINNIGDGFNFNKDFVLKSCLVLSDFNDIAFKVDNFNKANMLKIENNWDRITNSIRIAVSLVASFGYNRETLTSNNAIIPIAYFLNKINAKDTYALSNKNLEKKIKIKKWLVLSLIKRAFSGQPDNVLRPIRKIIQESGKDRYPLETIISYFKGTNKTLIFSDEDIENLLYYKYGQGFTFSVLSLLYPSLDYKNLFHVDHIFPKSQFTKAKLRKKGISEDEIDTFQKYVNFLGNLQLLEATPNIEKLNKNFDLWLYETYPNENDRKDYMKKHLIPDVDLSFENFIEFFERREKMLKHEFQKILQ
>NC_015672.1|WP_013886097.1|1008126_1009011_-|transposase
MARTKRFKINGDVGYYHVISRTVGGEFLLGDVEKEKLLSVIKQFSSLYFVSVIGYCIMDNHFHLLVKTSSVEDIDNEELKERLSRHNKNISDEITESEIIKYKKKLTDISEYVKSIKMTFSRWYNKRNNRKGYFWGDRFKSVLVESGESLLNMLAYIDLNPVRAKICNKPEEYRWSSFSHRLAKSSDDLLSFEGTEIDSFKDYVSFVYGVGKLEKKTEKGKEKGRISDETDAAVNIWHHKVRYFTDTLVIGSKGFIEYAYKTFDDKISKKERKAHKVPIDLPYQLYSIQRLNSV
>NC_015672.1|WP_013886096.1|1006634_1007945_-|ATP-binding-protein
MRFYGRKSELSDLNNSYRLSAVNSQMAVITGRRRVGKTRLIQKFVEDKSAIYFVVSRKDEHLLCEEFVDIVQKQTNVKFFGKIERFHDFFEFLLENFKDKNFVIVFDEIQEFKYINPSVYSEIQKLWDMYKDSASLQLIFSGSVYSMMKDIFENSKEPLFGRASLKINLTPFDIKTLKDIYSSNVDKTDNFDFFAFYAITGGVPKYVEYFVDRKIFSFDAIINEIFRENSFFVEEGKTTLIEEFGKEYTTYFSILSLIASSKTSRSEIESILEKDVGGFLQRLEKDFCIIKKIKPVFSKPNSRVQKYAIEDNFLSFWFRFIYKYNSAVEIGNYEYLKDVVRRDFNSYAGKILEKYFRAKLTMERNFNIIGNYWEKGNKNEIDIVGVNDYEKLLFFAEVKLDSKKASLDELKEKSQKIIRKFNDYKVEYRIFSLHDL
>NC_015672.1|WP_169310277.1|1006271_1006487_+|hypothetical-protein
MLEGKSTALLVTGAGPYENNAEGMIDAFRRMQKPHKSISAGELYIGRCTTPEALGKDIKQQSIDFAQKIAG
>NC_015672.1|WP_013886095.1|1004904_1006218_+|IS1380-like-element-ISFsi1-family-transposase
MSKLNYKLERSNDKITPFGGISLLIPLLDKMGIRDFLDKELDHPGSNRGKPPSSKIIPVILSMICGGRSFSDIDKLSFDKVLSYISGIEDIPDSSSISRYFSKTESMLDEVAVNKTISKLGSLNYKIVKDALKRENLFSVTLDQDATYAKVYKRDAKYCYKKFKAYSSMTCFIGESGYCIDEEFREGNVSAQVGILEQLQRVHKYLESCGIEVSNVRNDSAGYQSKVLNYCFDNDLTFFIGGDLDSSVRKGINHIPSDSWKRYRNRYGDESDNEEIAEFIHCMENTKESFRIIVVRKKIESDNPTVPELLGDKYEYRVIATNSKLDAEKVVHFYNLRGVCEYNIKEAKYGFNLKSFPSGNLAGNGLWFKTGILAYNLIMYLKRIIMGGVYKNKEMGSIRYQVISIAGKLVSHGGNKLKLCCSVKYNLPVPISLSISL
>NC_015672.1|WP_013886094.1|1003413_1004460_-|homocysteine-S-methyltransferase-family-protein
MKKPLLQRLDEGPVICGEGYLFELERRGYLQAGSFVPEVALNNPEVLEEVHRDFVKAGSDIVQAFTYNGHREKMRIIGKEEKLESLNRSAIRVAKKVASDFNDEPLVAGNVSNTNIFNPSDHSSKEKVRLMFSEMIGWCKEEDVDMIIGETFYYLEEALLALEVMKQHNFTSVITLGIMAENILEDGYTPTEACKILKDSGADVVGLNCFRGPETMLDIALDIRRNVSGHIAVLPVTYRTTAEEPTFFNITDKKRTACPQHGRCFPDALEPLYCNRYEIAEFAKKAYENDIRYLGLCCGCNPAFLRAMAEAVGRNTINSEYSPDITKHFLYGKDPTLKKHIQDLGNKA
>NC_015672.1|WP_148255815.1|1002286_1003291_-|aminodeoxychorismate-synthase-component-I
MKTSKFTKEHFTTDKAKFTEKFNNLFAKRIPFVFIIDYNVNNLLIEKITDADDKGISFIFPGLKNISDIDVSKNVNLSICPPSYDKYLRGFEIVRKNLLEGNTYLANLTFKSEIYSSLSLKKIFHKSKAKYKIKYNDDFVLFSPETFVKISDGYIYTYPMKGTVVAGDKNAAANLMEDEKEIAEHLTIVDLMRNDLNMVSSEIEVTKFRFLSEINTGNRQLLHTSSEINGKLTKYYMENPGEAILKLLPAGSICGAPKKRTLEIIKTAENYNRGFYSGIAGVYDGKDIDSCVMIRFIEKNSGKMFYKSGGGLTVYSDPKKEYEELVNKIYVPVN
>NC_015672.1|WP_013886092.1|1001712_1002303_-|aminotransferase-class-IV
MCLLIETIKLQNGIFHNLDYHNERLNNSRKNIFKKSEPLDLYSYLREFDYPKKGLFKVRVEYAENFKNTSFVSYTPVTITSLKVVINNNISYYYKYADRKCFQNIITGKNEEAIIIKNGFVTDCTYANLAFSDGKSWFTPNTYLLNGTKRQLYIDRGEIIPVEMRVKDIFHFKKVSLINSMLDLKEVCISTENIRK
>NC_015672.1|WP_148255814.1|1001495_1001699_+|DUF3179-domain-containing-protein
MIYLSPFPYLSPFPYYSFSGEKITISYNQESRFAKVTDTEGDEISSVISFWFAWQAFYPDTFLWRKK
>NC_015672.1|WP_013886091.1|1000363_1001401_+|ABC-transporter-ATP-binding-protein
MYTLEVKNIEKTFSAEKPLKSVNLNLASGEIGCLVGPSGCGKSTLLRIISGLETAERGSVKINNRMVFDKNINMPPFKRNVGMIFQDFSLFSHMNVFENVAFSIKKGSKATIKKKVYSILECFQISDIKFKYPHELSGGQQQRVALARTFIKNPDILLMDEPFSNLDVSLKDKLLKEIKSIIKSYQTTTLMVTHSMEEALKMSDKVGILKNGEIIQWASPYAIYHRPVDKFTADFSGDTSYIHARLINGVLETGLGKFDFNDKKYSDGEYDLLIRPEDITVSSEGIDAKVLNKEFMGAYTNYQIKLSSDDKILIKLPSHLNFSIGTNINVTPDFKHFIMFPSEKT
>NC_015672.1|WP_013886099.1|1014454_1014736_-|CRISPR-associated-endonuclease-Cas2
MFVIAVYDISTVELEGQKRLSKMMKLLRQYLHHTQKSVFEGEISESKLFELQKKSQNIINEDQDYIVFYKIDNKNNVKRMMYGIGSDPNETII
>NC_015672.1|WP_013886100.1|1014739_1015729_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MRDYYIFKSGRISRKDNSVMFDYFDNGVAKKIPIPVNDIDSIFVFSETDFNTKLINFFSKNNVMIHFFNYYGYYTGTFYPKEFLNAGEVVVKQSEHYLNNSYRLELAQEFVKGAAHGMLQNLKRYQTYTFEQIDKIKLLISAIDEQYSVPSLMGVEGNIKEIYYSSFKKIIKQKIDFEKRIKNPPNNMMNAIISFMNGLIYSNVLREIYRTQLNPTISFLHEPWYRRFSLALDVAEIFKPIYGDRIIFDLLNNDELQPKHFDKDLNFAYLKEDGRKIVVKAFDEKMKKTVRHKQLKRDVSYRKFIRLELYKLIKHILNEKNYKSLRIWW
>NC_015672.1|WP_013886101.1|1015732_1016227_-|CRISPR-associated-protein-Cas4
MLNPIVTGTQINYYFVCKRKLWLFSHNISMEQYSESVEIGKIVHETSYERKRKEIELDGIKIDFFDKNKGIIHEVKKSKAIEDAHIWQLKYYIYYFRQLGINVTGKINYPLIRKTENIDLNDEDIYHIVNICDKINEITSRETPPDVINEKICKKCSYFELCYV
>NC_015672.1|WP_013886102.1|1016230_1018372_-|CRISPR-associated-helicase/endonuclease-Cas3
MYAKSNPPKTIFEHNEDLVKNYDILKRYISPQLIEKYDKYLQKMLELHDYGKINTRFQNKLGICKNKIPKELTDIPEVPHEWLSLAFIPKNLKEEILNLDANNFNLYNVLRYSIAFHHTRNEIFDKNDFKSTVEYDLERNKHLLGIKYALNKLLNLTNLENSINDNFENIFEYLVLFKGILHKCDFSASAGTPCETEYKGNYQNDFKIGLQKRGIKELKPFQKNAKNLSDKNVILIASTGIGKTEYSMNWIKGNKAFYLLGIRIAVNAMHKRFADFFSKENVALLHGDISYFLTNETDSKNDYDHKMSKAKQLSYPLTIATADQMVTSVFKYNGFELPYLVASYSKVVVDEIQSFAPESIACIVVFLQEVSHLGAKFLIMTATLPPFIKEEFKNIVHFENPQLSEKKRHKIEVLDMQIEDYDFEKIQSNNVLVICNTVSKAQKIYEKLKEKKPKLLHSKFINKHRNVKEKTIMKCSNGIWITTQIVEASLDIDFDLLLTECCTIDGLLQRFGRCYRKREYYGENPNILIFKFDNISEKIYDKNLLQRSFSILRNDYNKKLLTEKDKQEMIDKVFQDIEKTCYYKSYKEYKELLKSGFKSSKNEAQKLFRKITNTHNVIPEPVYNKNEEEIKEIISQIEETSSLERIKLKEKLNKYCVSLQIFANKAKDIVKPLPVDSKYIKKSEIKMLKGVEYTYEKGVEFKKEYNDMDNFIL
>NC_015672.1|WP_013886103.1|1018374_1019094_-|CRISPR-associated-protein-Cas5
MISLKLSLYQNMVNFRKENSFGHVQSYPLPTPSMVRGMAHQILELTKYNPLKISIQGNSDSVTVNMQKVMKFDRDPKSRPINPYIVKVGNSVKTATHGIAFVDNLINCKLIIHIAFENEELTKNLYEKVMKNTVILGRNEDIARVNFDETKLTEISYSDDENELPYSIYVNSEDAKKLQLSGTSFRLPFRYENVTSFSDSRIFHKVNCQFISKNTILNEYTAETFLIDEDGLFVSFLET
>NC_015672.1|WP_013886104.1|1019090_1020026_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MSKHLHLGIIFKGTNLNYGESMGNYTSLKKCSIGEQTYSYITRQAIRYDIVRIMEEECGYDKAEIDNVQKVVQFASGAKITDYPEIDFFGYMKTEKKKSNKDEDKNQSDNEGKTKIRKAIARISDAVSLEPFYNEIDFSTNMGLAARKNLENQIYQTETHRSYYSYSVTVDLDKVGVDENDSVNLDTTEKIKRLKALFYSVKTLNRDIKGRRENLNPIFVIGGIYESGNPFFYNQLKLSFSKDGVFLNENIVNSILETQLFNEKPIKNNTQAGAVDGHFKNTDKLNIEIKSVEEFFTNLNNKIKQYFEGQN
>NC_015672.1|WP_013886105.1|1020018_1021599_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MSDELIRIYTGDWYFNAGIVGFLRTICNNNFEKLSEFDNQDLYIGDNFLDFNPNILKYFKENFYKQLFLNYFNKTQYLAYINKALTHKNKDNSLNISKSKKEVDKFPFQGLWKTLDQSLESKNDFLEFYAKIESITKEQIYELIKNKDKASLEKLLGYLTNGIIGLSKIGQYINDSVDKKYKIKSKKNRFCISCQERKGKFDVSNAISNIIGFNSDNSNWIWGFDANKVKFCSVCSLIYISASVGLVFSKKGKNYNNCFYFVNHNGNINLLLKSYIQFRYQLEDIKSSFSIYPVMVKESVKFTKSTKAEKTLHNISFVEVKESGMGGQSTKGYNVYSFSMPEKLANFIDKNNQLIPKGYYKIDKSFFDIEENILKSTIEQTLGYKDIDKYIRIYISNTDGGRKFSPYKIIKYILRYINFIHGGNSMDMEKISKKGFANGKEIGNLFRSSERENQINSLVYQFLNDLKVANREKFLDKYLRVTISNGLESRFGNVEMNNKDAFLQFGYSFINGLLNTYQNEKGENNE
>NC_015672.1|WP_013886106.1|1021595_1022333_-|CRISPR-associated-endoribonuclease-Cas6
MRLTYWLKFAKGDNKIRTEYRRDVLRYIKNSLSEYAPEIYEKYYANKKENQPKPFTFSVSFSIAEKPNSRNDYFILENDSLKIHFSFADYTFGMTVYNALLQEKNEAKIFGDAVQKIEHINLEKDKKIDDSTTVFKTLSPILVRDLHNGKGKGFIDSNHKNFSGNLTKNITHLANHFLQETNISENEISVEPVKMKSDIINHYGGEIGNTGIIKISAPGEILQLIYDAGLGAKRSQGFGMLEVIG
>NC_015672.1|WP_013886107.1|1022627_1023116_-|HyaD/HybD-family-hydrogenase-maturation-endopeptidase
MKISIFGAGNTLLSDEGFGVHFVRYLQSRYDFPENIDVVDAGTMGMLASGFIENYDYVFIIDVVEIKDKPGTILIYDYDDIRLNKMPAKLSPHQIGVQEMLLMCDIRGVSPDNLKLISVVPESMTIGDSLSKTLKNCLKEVENILLKELESLNIPFYKKSIN
>NC_015672.1|WP_013886108.1|1023112_1024795_-|nickel-dependent-hydrogenase-large-subunit
MSKKITIDPVTRIEGHLRIDVEVDNDRVTNAWSSAQMFRGIETILKGKRPEDAWSYAQRFCGVCTTVHAIASIRSVENALNVQVPLNGQYLRNLMIAMHSMQDHIVHFYHLSALDWVDITSCLKADPKKTSLLAESMSDFGGHGVDDFKNVQKKLKHFVDSGRLGIFASGYWGHQAMKLSPEENLLLFSHYLTALDYQKKAAQAVAVIGGKNPHIQNLVVGGVATAVNMDNMATLNVERLSLIRKKLGEVKKFIDKVYMNDLVLLADRYREWFDIGQSVGNYIAVPEYPLDIHSKEFLIQGGIFFNGEQNIHHKILDHSDDYLINNITESSEFAWYNNPAPLHPWEGSSDPRFTGYDHDSKYTWCKAPRFKEKAIETGPVAQILAGYHTGNEFIKREIDFYNSTLSIDNSKYNSTMGRLLARGYRAKFSAETAEYFLDKLIENIAAGDSDYANPTEIPSGEYKGVGFHEAPRGMLSHFIHIKNKKIENYQAVVPSTWNASPRDENGVMGPYENSLINTQLAETEKPLEILRTIHSYDPCIACAVHAVDPDGGDIVKVKVL

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Crispr_ID: NC_015672_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015672_2

1428419-1430685

TypeIII

Consensus_repeat	Method
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CRISPRCasFinder
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CRT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	PILER-CR
AGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTA	PILER-CR
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	PILER-CR

30 spacers

csx20,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas6

The CRISPR arrays of NC_015672_2

>merge|NC_015672|2|1428419-1430685|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
TCAGAGCTTGCTGGAAATCAGGTCATTAATTCCAATTGAAGATTAATGACCCGAAGCAAATCCAGATTTTAGAAGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCATAGGCTCATTAAAGGGCATGTAAGCATGGAGCTTGTGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATGCAAAATACAACTGAAAACACAAGTAAAGTAAAACTAAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAAAGGGTCAATGATTTCTTATTTAAAAAGATACAGCTGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATGCGCCGCCGTAAGTTTTTTAACGGCGGATATAAGGCTGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAGTTAAAAGCTGTTTTCACTCTCCTGAAATGGGAGAGTGAAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCAAAAATCTGCGTGAGCCAGAGATAGAAGAAGGCAGTACGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAGATATGTATAACGTAGCCTTCGAACTGTACTGTGAGAAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATGAAAATTGTCATGGCAATTCTATTTTTTGGCGGTCTAGGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAAATTTAGTATTAACAACAAGTGGAAACAAACTCTATGTGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATACCATTGTTCAACACACTATTCAATGCTGTGACAAAGAACGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAAATATGGCGCGAGGTTTGCAGACTTGCAGCCTCACGCTGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATATTAATTTTCTTATCAGGGGGGGAAGAAAAAATAAAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAAAAGGTAAAAAAATATACAATTAAAGACGAGTTGGGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTCCATGGTCAGAGCTCGAATCCGCAATCGGGCACCCGGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTAGATGTTGCAAAGCAGCCGGTTAAGCTCCGGCTGCTATGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCATAAGTGCATCTGAATTTTGGGAGCGCGCAGTAAAAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTAATATTACAAAATGTTATATTAATAATAATATTGATAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAAATCAAATAAATTTAAGAAGTCTGCAAAGCGCAGGGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCGAATCCGCCATCGGGCACCCGGATACAGCCCGGGTGCGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCTTAAAAGCTTTATGGAACAAAATGGCCTGGCGGAAATGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAGATTAAAAGATTTATATAAAAAGTACGGCGCTGAGTATGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTACTTCCGCGTAGAAGTACTTTAAAAAAATAAAAACCGTGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCGGCGGGTATAAAGCAGTCCTCAGATACTTTGAGGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATATAATAAGCGCCTTATCCAATCAAAAAATTTTTCTTTTGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTCCCGGGGAGAAAAGAGACATAGCAAAGCAGCCGGTTAAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAGCAATAAGCTTACATAAAAATTCTTTCTCTCCTTTGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAGATTGTTCTACTCTTACCTTTATTCGTCTTTATGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAAATGAGAAATGAAATAATTGTAAATAAGATTTCAGAAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATGGAAGGGGCAACAACCCTTCCGGAGGGTTTTAAAATGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT

>NC_015672|2|2|1428419-1430685|CRISPRCasFinder
TCAGAGCTTGCTGGAAATCAGGTCATTAATTCCAAT	TGAAGATTAATGACCCGAAGCAAATCCAGATTTTAGAAGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CATAGGCTCATTAAAGGGCATGTAAGCATGGAGCTTGT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GCAAAATACAACTGAAAACACAAGTAAAGTAAAACTAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAAGGGTCAATGATTTCTTATTTAAAAAGATACAGCT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GCGCCGCCGTAAGTTTTTTAACGGCGGATATAAGGCT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGTTAAAAGCTGTTTTCACTCTCCTGAAATGGGAGAGTGAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CAAAAATCTGCGTGAGCCAGAGATAGAAGAAGGCAGTAC
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAGATATGTATAACGTAGCCTTCGAACTGTACTGTGAGAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GAAAATTGTCATGGCAATTCTATTTTTTGGCGGTCTAG
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATTTAGTATTAACAACAAGTGGAAACAAACTCTATGT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	ACCATTGTTCAACACACTATTCAATGCTGTGACAAAGAAC
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATATGGCGCGAGGTTTGCAGACTTGCAGCCTCACGCT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	ATTAATTTTCTTATCAGGGGGGGAAGAAAAAATAAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAAAGGTAAAAAAATATACAATTAAAGACGAGTTGGGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TCCATGGTCAGAGCTCGAATCCGCAATCGGGCACCCGGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TAGATGTTGCAAAGCAGCCGGTTAAGCTCCGGCTGCTAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CATAAGTGCATCTGAATTTTGGGAGCGCGCAGTAAAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TAATATTACAAAATGTTATATTAATAATAATATTGATA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATCAAATAAATTTAAGAAGTCTGCAAAGCGCAGG
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CGAATCCGCCATCGGGCACCCGGATACAGCCCGGGTGC
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CTTAAAAGCTTTATGGAACAAAATGGCCTGGCGGAAAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTAAAAGATTTATATAAAAAGTACGGCGCTGAGTAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TACTTCCGCGTAGAAGTACTTTAAAAAAATAAAAACCGT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CGGCGGGTATAAAGCAGTCCTCAGATACTTTGAGGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	ATAATAAGCGCCTTATCCAATCAAAAAATTTTTCTTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TCCCGGGGAGAAAAGAGACATAGCAAAGCAGCCGGTTAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAGCAATAAGCTTACATAAAAATTCTTTCTCTCCTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTGTTCTACTCTTACCTTTATTCGTCTTTATGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATGAGAAATGAAATAATTGTAAATAAGATTTCAGAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GGAAGGGGCAACAACCCTTCCGGAGGGTTTTAAAATGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT

>NC_015672|2|2|1428419-1430685|CRT
TCAGAGCTTGCTGGAAATCAGGTCATTAATTCCAAT	TGAAGATTAATGACCCGAAGCAAATCCAGATTTTAGAAGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CATAGGCTCATTAAAGGGCATGTAAGCATGGAGCTTGT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GCAAAATACAACTGAAAACACAAGTAAAGTAAAACTAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAAGGGTCAATGATTTCTTATTTAAAAAGATACAGCT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GCGCCGCCGTAAGTTTTTTAACGGCGGATATAAGGCT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGTTAAAAGCTGTTTTCACTCTCCTGAAATGGGAGAGTGAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CAAAAATCTGCGTGAGCCAGAGATAGAAGAAGGCAGTAC
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAGATATGTATAACGTAGCCTTCGAACTGTACTGTGAGAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GAAAATTGTCATGGCAATTCTATTTTTTGGCGGTCTAG
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATTTAGTATTAACAACAAGTGGAAACAAACTCTATGT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	ACCATTGTTCAACACACTATTCAATGCTGTGACAAAGAAC
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATATGGCGCGAGGTTTGCAGACTTGCAGCCTCACGCT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	ATTAATTTTCTTATCAGGGGGGGAAGAAAAAATAAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAAAGGTAAAAAAATATACAATTAAAGACGAGTTGGGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TCCATGGTCAGAGCTCGAATCCGCAATCGGGCACCCGGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TAGATGTTGCAAAGCAGCCGGTTAAGCTCCGGCTGCTAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CATAAGTGCATCTGAATTTTGGGAGCGCGCAGTAAAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TAATATTACAAAATGTTATATTAATAATAATATTGATA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATCAAATAAATTTAAGAAGTCTGCAAAGCGCAGG
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CGAATCCGCCATCGGGCACCCGGATACAGCCCGGGTGC
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CTTAAAAGCTTTATGGAACAAAATGGCCTGGCGGAAAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTAAAAGATTTATATAAAAAGTACGGCGCTGAGTAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TACTTCCGCGTAGAAGTACTTTAAAAAAATAAAAACCGT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CGGCGGGTATAAAGCAGTCCTCAGATACTTTGAGGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	ATAATAAGCGCCTTATCCAATCAAAAAATTTTTCTTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TCCCGGGGAGAAAAGAGACATAGCAAAGCAGCCGGTTAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAGCAATAAGCTTACATAAAAATTCTTTCTCTCCTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTGTTCTACTCTTACCTTTATTCGTCTTTATGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATGAGAAATGAAATAATTGTAAATAAGATTTCAGAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GGAAGGGGCAACAACCCTTCCGGAGGGTTTTAAAATGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT

>NC_015672|2|2|1428433-1429427|PILER-CR
AAATCAGGTCATTAATTCCAATTGAAGATTAATGAC	CCGAAGCAAATCCAGATTTTAGAAGAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATCATAGGCTCATTAA	AGGGCATGTAAGCATGGAGCTTGTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATGCAAAATACAACTG	AAAACACAAGTAAAGTAAAACTAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAAGGGTCAATGA	TTTCTTATTTAAAAAGATACAGCTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATGCGCCGCCGTAAGT	TTTTTAACGGCGGATATAAGGCTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAGTTAAAAGCTGTT	TTCACTCTCCTGAAATGGGAGAGTGAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATCAAAAATCTGCGTG	AGCCAGAGATAGAAGAAGGCAGTACGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAGATATGTATAAC	GTAGCCTTCGAACTGTACTGTGAGAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATGAAAATTGTCATGG	CAATTCTATTTTTTGGCGGTCTAGGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAATTTAGTATTA	ACAACAAGTGGAAACAAACTCTATGTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATACCATTGTTCAACA	CACTATTCAATGCTGTGACAAAGAACGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAATATGGCGCGA	GGTTTGCAGACTTGCAGCCTCACGCTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATATTAATTTTCTTAT	CAGGGGGGGAAGAAAAAATAAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAAAGGTAAAAAAATATACAATTAAAGACGAGTTGGGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTCCATGGTCAGAGCTCGAATCCGCAATCGGGCACCCGGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTA	GATGTTGCAAAGCAGCCGGTTAAGCTCCGGCTGCTA
TGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCA	TAAGTGCATCTGAATTTTGGGAGCGCGCAGTAAA
AGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTA	ATATTACAAAATGTTATATTAATAATAATATTGAT
AGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAAATCAAATAAATTTAAGAAGTCTGCAAAGCGCAGGGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCGAATCCGCCATCGGGCACCCGGATACAGCCCGGGTGCGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CTTAAAAGCTTTATGGAACAAAATGGCCTGGCGGAAAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTAAAAGATTTATATAAAAAGTACGGCGCTGAGTAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TACTTCCGCGTAGAAGTACTTTAAAAAAATAAAAACCGT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CGGCGGGTATAAAGCAGTCCTCAGATACTTTGAGGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	ATAATAAGCGCCTTATCCAATCAAAAAATTTTTCTTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TCCCGGGGAGAAAAGAGACATAGCAAAGCAGCCGGTTAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAGCAATAAGCTTACATAAAAATTCTTTCTCTCCTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTGTTCTACTCTTACCTTTATTCGTCTTTATGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATGAGAAATGAAATAATTGTAAATAAGATTTCAGAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GGAAGGGGCAACAACCCTTCCGGAGGGTTTTAAAATGA


>NC_015672|2|3|1429541-1429801|PILER-CR
	CCGAAGCAAATCCAGATTTTAGAAGAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATCATAGGCTCATTAA	AGGGCATGTAAGCATGGAGCTTGTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATGCAAAATACAACTG	AAAACACAAGTAAAGTAAAACTAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAAGGGTCAATGA	TTTCTTATTTAAAAAGATACAGCTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATGCGCCGCCGTAAGT	TTTTTAACGGCGGATATAAGGCTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAGTTAAAAGCTGTT	TTCACTCTCCTGAAATGGGAGAGTGAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATCAAAAATCTGCGTG	AGCCAGAGATAGAAGAAGGCAGTACGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAGATATGTATAAC	GTAGCCTTCGAACTGTACTGTGAGAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATGAAAATTGTCATGG	CAATTCTATTTTTTGGCGGTCTAGGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAATTTAGTATTA	ACAACAAGTGGAAACAAACTCTATGTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATACCATTGTTCAACA	CACTATTCAATGCTGTGACAAAGAACGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAATATGGCGCGA	GGTTTGCAGACTTGCAGCCTCACGCTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATATTAATTTTCTTAT	CAGGGGGGGAAGAAAAAATAAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAAAGGTAAAAAAATATACAATTAAAGACGAGTTGGGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTCCATGGTCAGAGCTCGAATCCGCAATCGGGCACCCGGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTA	GATGTTGCAAAGCAGCCGGTTAAGCTCCGGCTGCTA
TGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCA	TAAGTGCATCTGAATTTTGGGAGCGCGCAGTAAA
AGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTA	ATATTACAAAATGTTATATTAATAATAATATTGAT
AGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAAATCAAATAAATTTAAGAAGTCTGCAAAGCGCAGGGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCGAATCCGCCATCGGGCACCCGGATACAGCCCGGGTGCGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CTTAAAAGCTTTATGGAACAAAATGGCCTGGCGGAAAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTAAAAGATTTATATAAAAAGTACGGCGCTGAGTAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TACTTCCGCGTAGAAGTACTTTAAAAAAATAAAAACCGT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CGGCGGGTATAAAGCAGTCCTCAGATACTTTGAGGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	ATAATAAGCGCCTTATCCAATCAAAAAATTTTTCTTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TCCCGGGGAGAAAAGAGACATAGCAAAGCAGCCGGTTAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAGCAATAAGCTTACATAAAAATTCTTTCTCTCCTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTGTTCTACTCTTACCTTTATTCGTCTTTATGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATGAGAAATGAAATAATTGTAAATAAGATTTCAGAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GGAAGGGGCAACAACCCTTCCGGAGGGTTTTAAAATGA


>NC_015672|2|4|1429911-1430685|PILER-CR
	CCGAAGCAAATCCAGATTTTAGAAGAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATCATAGGCTCATTAA	AGGGCATGTAAGCATGGAGCTTGTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATGCAAAATACAACTG	AAAACACAAGTAAAGTAAAACTAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAAGGGTCAATGA	TTTCTTATTTAAAAAGATACAGCTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATGCGCCGCCGTAAGT	TTTTTAACGGCGGATATAAGGCTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAGTTAAAAGCTGTT	TTCACTCTCCTGAAATGGGAGAGTGAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATCAAAAATCTGCGTG	AGCCAGAGATAGAAGAAGGCAGTACGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAGATATGTATAAC	GTAGCCTTCGAACTGTACTGTGAGAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATGAAAATTGTCATGG	CAATTCTATTTTTTGGCGGTCTAGGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAATTTAGTATTA	ACAACAAGTGGAAACAAACTCTATGTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATACCATTGTTCAACA	CACTATTCAATGCTGTGACAAAGAACGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAATATGGCGCGA	GGTTTGCAGACTTGCAGCCTCACGCTGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATATTAATTTTCTTAT	CAGGGGGGGAAGAAAAAATAAAGTCGTAATCCCTTC
AAATCAGGTCATTAATTCCAATAAAAAGGTAAAAAAATATACAATTAAAGACGAGTTGGGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTCCATGGTCAGAGCTCGAATCCGCAATCGGGCACCCGGAGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTA	GATGTTGCAAAGCAGCCGGTTAAGCTCCGGCTGCTA
TGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCA	TAAGTGCATCTGAATTTTGGGAGCGCGCAGTAAA
AGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTA	ATATTACAAAATGTTATATTAATAATAATATTGAT
AGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATAAAATCAAATAAATTTAAGAAGTCTGCAAAGCGCAGGGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATCGAATCCGCCATCGGGCACCCGGATACAGCCCGGGTGCGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CTTAAAAGCTTTATGGAACAAAATGGCCTGGCGGAAAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTAAAAGATTTATATAAAAAGTACGGCGCTGAGTAT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TACTTCCGCGTAGAAGTACTTTAAAAAAATAAAAACCGT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	CGGCGGGTATAAAGCAGTCCTCAGATACTTTGAGGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	ATAATAAGCGCCTTATCCAATCAAAAAATTTTTCTTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TCCCGGGGAGAAAAGAGACATAGCAAAGCAGCCGGTTAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAGCAATAAGCTTACATAAAAATTCTTTCTCTCCTTT
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AGATTGTTCTACTCTTACCTTTATTCGTCTTTATGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	AAAATGAGAAATGAAATAATTGTAAATAAGATTTCAGAA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	GGAAGGGGCAACAACCCTTCCGGAGGGTTTTAAAATGA
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015672.1\|WP_013886462.1\|1417379_1418732_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NC_015672.1\|WP_013886477.1\|1438516_1439689_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
NC_015672.1\|WP_013886468.1\|1423750_1425391_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NC_015672.1\|WP_169310284.1\|1421904_1422939_-\|family-10-glycosylhydrolase	unknown	unknown	gnl\|CDD\|274867
NC_015672.1\|WP_013886463.1\|1418774_1419866_+\|NADH:flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|239201
NC_015672.1\|WP_013886475.1\|1433444_1434143_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_015672.1\|WP_013886467.1\|1423040_1423748_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|335993
NC_015672.1\|WP_013886469.1\|1425582_1426215_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_015672.1\|WP_013886465.1\|1420511_1421891_-\|protoporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|213540
NC_015672.1\|WP_013886474.1\|1432508_1433435_-\|hypothetical-protein	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|273866
NC_015672.1\|WP_013886476.1\|1434153_1434576_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_015672.1\|WP_013886478.1\|1439681_1440593_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_015672.1\|WP_041262310.1\|1434568_1435228_-\|hypothetical-protein	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|274209
NC_015672.1\|WP_013886470.1\|1426870_1428238_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_015672.1\|WP_013886472.1\|1430993_1431377_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown
NC_015672.1\|WP_013886461.1\|1416527_1417274_+\|nitrilase/cyanide-hydratase-and-apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|143607
NC_015672.1\|WP_041262311.1\|1436818_1438516_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_015672.1\|WP_041262549.1\|1419909_1420473_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NC_015672.1\|WP_013886473.1\|1431373_1432507_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NC_015672.1\|WP_013885271.1\|1435400_1436768_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531

Protein	Function_ID	Function_description	E-value
NC_015672.1\|WP_013886462.1\|1417379_1418732_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	2.36566e-130
NC_015672.1\|WP_013886477.1\|1438516_1439689_-\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	2.6113e-18
NC_015672.1\|WP_013886468.1\|1423750_1425391_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NC_015672.1\|WP_169310284.1\|1421904_1422939_-\|family-10-glycosylhydrolase	gnl\|CDD\|274867	TIGR03938, hypothetical_protein_Pcar_2791, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB. Two well-characterized systems produce polysaccharide based on N-acetyl-D-glucosamine in straight chains with beta-1,6 linkages. These are encoded by the icaADBC operon in Staphylococcus species, where the system is designated polysaccharide intercellular adhesin (PIA), and the pgaABCD operon in Gram-negative bacteria such as E. coli. Both systems include a putative polysaccharide deacetylase. The PgaB protein, described here, contains an additional domain lacking from its Gram-positive counterpart IcaB (TIGR03933). Deacetylation by this protein appears necessary to allow export through the porin PgaA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	4.90849e-20
NC_015672.1\|WP_013886463.1\|1418774_1419866_+\|NADH:flavin-oxidoreductase	gnl\|CDD\|239201	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	6.75248e-138
NC_015672.1\|WP_013886475.1\|1433444_1434143_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	9.14903e-65
NC_015672.1\|WP_013886467.1\|1423040_1423748_-\|SPOR-domain-containing-protein	gnl\|CDD\|335993	pfam05036, SPOR, Sporulation related domain. This 70 residue domain is composed of two 35 residue repeats found in proteins involved in sporulation and cell division such as FtsN, DedD, and CwlM. This domain is involved in binding peptidoglycan. Two tandem repeats fold into a pseudo-2-fold symmetric single-domain structure containing numerous contacts between the repeats. FtsN is an essential cell division protein with a simple bitopic topology, a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. These repeats lay at the periplasmic C-terminus. FtsN localizes to the septum ring complex.	0.000655901
NC_015672.1\|WP_013886469.1\|1425582_1426215_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.95566e-41
NC_015672.1\|WP_013886465.1\|1420511_1421891_-\|protoporphyrinogen-oxidase	gnl\|CDD\|213540	TIGR00562, Protoporphyrinogen_oxidase, protoporphyrinogen oxidase. This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	3.81719e-107
NC_015672.1\|WP_013886474.1\|1432508_1433435_-\|hypothetical-protein	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	1.50658e-09
NC_015672.1\|WP_013886476.1\|1434153_1434576_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	8.91277e-12
NC_015672.1\|WP_013886478.1\|1439681_1440593_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	1.69421e-06
NC_015672.1\|WP_041262310.1\|1434568_1435228_-\|hypothetical-protein	gnl\|CDD\|274209	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.	9.37317e-20
NC_015672.1\|WP_013886470.1\|1426870_1428238_+\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	6.87794e-18
NC_015672.1\|WP_013886461.1\|1416527_1417274_+\|nitrilase/cyanide-hydratase-and-apolipoprotein-N-acyltransferase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	6.3106e-70
NC_015672.1\|WP_041262311.1\|1436818_1438516_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.02671e-90
NC_015672.1\|WP_041262549.1\|1419909_1420473_-\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	2.34216e-51
NC_015672.1\|WP_013886473.1\|1431373_1432507_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	5.97935e-10
NC_015672.1\|WP_013885271.1\|1435400_1436768_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	4.1948e-18

>NC_015672.1|WP_013886470.1|1426870_1428238_+|IS5-family-transposase
MRPKKQDSTTQELLEPLLVNIIDMKHPLIQLADKIDWEYFEKEFGSLYHRNDGRPGIPMRMMVGFHYLKYTYNLSDEDVVHGWKENPYWQYFTGEKVFQTKVPINPTSMTRFRNRLKEEDLLKFLEETINTAFRSGYLNKNDVKKVAADTTVQEKNITFPTDIKLFYTMIKYLVKFSKKHEIRLKETHEYSGKKLLMKYSGYVHAKQYKRAGKAVKKMKTKMGKLYRSIERVLPEELRNSDEFQQLKLFYESLWNRSKKSKNKLYSLHSPEVECISKGKSHKRYEFGNKVGFVGTLKKNFILSCKSFHGNPYDGHTLEENLCEAKTLLGSNGTIDTILVDLGYRKHNYRGDAKVHVVPRSMKKFKVNFKRLLKRRSCVEATIGHTKRDNRMDRNYLKGKEGDKANAILAASGHNLRLILAFLLFFLKEFMDNIAKKLANFANEVFLDKKYAKIYV
>NC_015672.1|WP_013886469.1|1425582_1426215_-|LysE-family-translocator
MNEQMITFFIVAALLTISPGADTMLVIRNVISSNASRGLLTTTGICSGLFFHAALSALGVSVILVKSAAAFYILKTVGAIYLCWLGVQSLRKAFEKEGNSASFKENKNHSVKLKKSFLEGWLNNVLNPKTAVFYFAFLPQFINPGDPVFIKSLGLAGIHCVMSFIWLSFIVFSVHSVRLLFIRPFFRRTLEGLSGGVLISLGIKLAFESR
>NC_015672.1|WP_013886468.1|1423750_1425391_-|arginine--tRNA-ligase
MKEVVRKKISEAAGKIYDGEIDSLNYTVEIPKKSENGDFATNVAFLLAKELRKAPAKIAEDILSHLDESFFHKVEIAGGGFINFFISYKQFHNFLLNILENEDNLTEKTKNPLKIQVEFVSANPTGPLHVGHGRGASYGDSLARILSAAGHEVYREYYVNDAGNQMNNLAKSIYARYSDLTGGDYPFPEDGYRGEYIIEIAERLKSEFGGSLLSKDEDDALSICLDQGKSFILNEIKDDLRDFNVEFDNWFSEQSLYDEGKVEDTLNFLKGKDKIYEADSALWFKSTEYNDDKDRVLRKSDGELTYFASDIAYHRDKFERGFDKVIDVWGADHHGYVDRMKAAVNAIGRDENDLYVALVQMVSLIKDGSKISMSTRAGQFVTLKWLVDEVGASAARFFYLMRDINSQFEFDIDLAKSKTSDNPVYYVQYGHARVCSLFAKLKEKGISVSVGKNIERLDRKDEIEIIKKMYDFRNVLNQAATNYQPHRIVYYLQELAGLLHSYYYTTPIIVEDDKELTNARITLCKGIAIVIRYALNLLGIKAVERM
>NC_015672.1|WP_013886467.1|1423040_1423748_-|SPOR-domain-containing-protein
MKDFDKIKEKKNSNDMRGIIVLSIIFLIAFALIVFAIIKLTNDYFDLKMKLKEAKQEDKVQLTDPGEGKSYQFTAQDNESVVKKTEEELQELSKMDISDDNTTAKTAKKQLKVKNEIKKEKVTSKPVEKKEATIDKESTAKETGSAAVSESAGEKEKGDFVVQILSVQSKSDAEREAEKLKKLVSDVYVARADLGSKGIWYRVRCCKNTSKKYATGIVNKIKSETRYKPIVLRSD
>NC_015672.1|WP_169310284.1|1421904_1422939_-|family-10-glycosylhydrolase
MQIFNLDSQYENNLSEYFRKLKNSGINTVFFRVFQNYGDRFHLGVQSYCQSGVYFKSQNACVISDLLSKVVKYAGMYDLKVYAWMSTRSLSFLKNKYHLEVAFKDGDFVEGYGVSIFNPDVRREITKLFKDLAYYDIDGILIQDDFILRYNEGFSKAARHRFFVDTGHYPDPAKLFKDNRKNSFYNSWSEWKMRQLSAFLSELRFAVKLINPGIKFAVNIYYETPSQPGNGLSWYSQSIDRYKNLGFSYYAYMAYHEQISRETGGSFYDTMEYINKSINSFLKYGLDEKQIIVKIQVRSFYNGRVKLPEKEINILCDLIDNYGKLSYALVPFERISDIPKFCFY
>NC_015672.1|WP_013886465.1|1420511_1421891_-|protoporphyrinogen-oxidase
MKIGIIGGGISGVAAAFWIDKMLSEEGINGEITLLEKNNSLGGSIGTVEKEGFTIESGPNGFLNSKPHTLQLFDEAGLNENLLPSNDAARKRFIMRDSKLVKLPEKPGEFLKSDILSFQGKLRVAAELLIPKKKNNKDETVAEFATRRLGKEACEYLISPMVSGVFAGDPYKLSLKSCFPVIADLEETYGGLFKGMLKKKNKKSGPAGPGGVLTSYKGGLINSLTDLSKKTKSVEYRLGDGVNRVEKVHDKFHIKTASANEFDFDHLVVACPSYVASEFFKDMDSELSDSLNKIHYAPAFVVGFGFDEEDVKHDMDGFGYLIPPTENRKILGALFTSSIFPERAPEGKKLVRVIMGGDRNPWIVGKPEEELVLMALEGINDTLGIKGHPEVVQYFKWNMAIPQYYRGHSKIVKSIENASESAGNLYIGGNILYGIGINDCTRTSFEIAKELLENIKAHQ
>NC_015672.1|WP_041262549.1|1419909_1420473_-|isochorismatase-family-protein
MDVNYFGLDKRKTALLIIDVQEKLTPVMKKDVYEKIKNNILILAKGANKLNIPIFYTQQYTKGLGETDPDIKKELNDATFYEKTSFSCCGEDTFLDSFMEMDFESVIVAGMETHICVLQTVTDLVANGMAVHVAADAVCSRDKFNWKFGLEFMKDAGAIITVTETALFQLLGKAGTENFKYISKLVK
>NC_015672.1|WP_013886463.1|1418774_1419866_+|NADH:flavin-oxidoreductase
MDNIFRESKINNAVLSNRLIRSATWEGMCDNTGAPTEKLIKFYEEMIKGGIGLIITGYQYVKKDGQQLPGQIGIHDDSLAKSHKNLTKRIHEAKGKIFAQLVHCGGQSSSKSSGFQPSAPSALKSPQYPEKVKELTEEEIEILISSFADAAMRTKEWGYDGIQLHAAHGYLINQFLSPNTNRRNDRFGGTLHNRARFLYDIYENIREKTGNEFPIIVKLNGSDNLDGGFELDEAVKVAEKLDEMGIDAIEVSGGTPASGEKTPVRTDISESGKEGYNMHEALKIKKNVSCPVISVGGFRSYKVVEKALEQIDFVSMARPLICEADLPTIWKRKDKNTSDCISCNGCFRPGLKESGIRCVIKNP
>NC_015672.1|WP_013886462.1|1417379_1418732_+|NAD(P)/FAD-dependent-oxidoreductase
MNNTQKYDFIAIGSGVAGSTAVIECARHGLKTAIVDNKPYGGTCPLRGSDPKKILLGAAELYDWFSRMKNTGIINGDIRIDWQNLIQYKCSYTNNIPMKVEQSLKKMSIDSLSGNAEFANENTLKIGDKFYTADNILVASGSVPTKLPFNGAEMMSSSDDFLSLKTLPDKIIFVGGGFISMEFAQAAARAGAKSIIVHSGERILLGFDKELVGLLNKAAQESGIDIIVNNRVSKIETDGDTLIAHLSNSEETIRADMIVHGAGRMANVYNMNLETGNVAYDSGGIKVNEYMQNTSNSSVYAAGDVTDSEGPYLATVAAMEGRIAAENIIHGNKRKPQYENIPSVVFTIPTLASVGMQEEDAAKAGIKYNSRFQETSDWFTSYRVGEKYSGYKIITDENNTKILGAHLLGPSSEDVINLFTFAINRGITPEEMKNMVYTYPTASSDIVYML
>NC_015672.1|WP_013886461.1|1416527_1417274_+|nitrilase/cyanide-hydratase-and-apolipoprotein-N-acyltransferase
MKISLLQLKIKSKPEENIDKVINKTKNLNGHIVLLPEMFTTGFDYPLINSLDEKHPEILKNLPDSNVYMGSILRKTSKGKFNSFFIKNGRNITFPYDKLHLFPLMQEEKHLMPGERLNTFTLKNILCAAGICFDIRFPEMFRYYFKKNASIIFIPSEWPSKRIKQLIRLVRARAVENQCFYVMCNAAGKTTGHHFGGMSAVFDPLGNNLNKMTAKCDEIISTEIDTNKISIAKNNIETLNHLRNDIYG
>NC_015672.1|WP_013886472.1|1430993_1431377_-|hypothetical-protein
MNFFLVFSHSLTNVQIEDAKSMGVENFFYFPAQLQNIWSNIRPEGDLPVSDLDRIVDWIDANSSKGDFALVQGDFGATYYIVNRCFDMGLIPVYSTTKRIASEESISASEVGKQSVFEHVNFRRYVK
>NC_015672.1|WP_013886473.1|1431373_1432507_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MSMICKYNIQAFLASPVHIGTGEMYDPFSYVIKGNVFYHFETAAFLSNLSSEKTKQFTYILKNPSRDSILKSREFIYNNFDADVMKDIIIDEIDLSKSSFPKDYEEKLSDLANKDPRNKAINLLEIEQTYSSGGFPIIPGSSLKGSIRTAIINQLIEDNNIRVDKGRYSYKKLMRDMDLSYQNDIFDMLKISDFHKENAGKWIGYFKNYPKSKMEKSISQNNQIDVATEVLRPFQVFKGEINIFPKEKRHQFEKQFNDITKTKVNIFKCLNRHYLDLFKQEYNFFKKKNPKSNFFKIIEQKNFLEKLESNEYAVLKVGKHSGAEGVTFKDRAIFIKGSKNKDAKYDAKTSTTTWYFSQKKELSVPNLLYPLGWIILI
>NC_015672.1|WP_013886474.1|1432508_1433435_-|hypothetical-protein
MKYYKATIFPKSPFATPPMSDTLFGQLIWMLNDLGEDVAKMLATYDSNPCFVVSDFIANNQGVAPKMPTTYNLGKSKMEKIQEILDRKELKKRSKIDLDKLYKMQKIDSKKIIDNSIKKNHDEINETVHCSLNRLTGTTGNGFDPYSVIETVYKKDTFFTCYFYVSENEHVEKIKDALILMGKIGFGKDASIGKGRFSVDKFEEINFSHNNKNSIYTLGNVVLDGINDYKNCYYEIFTRFGKHGNILSVTGNPYKNPVVMAKQGALITDVSDKLFEKPFIGKSLKGLSYHQETVHQGYSLYVPIDVEV
>NC_015672.1|WP_013886475.1|1433444_1434143_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MEKLKIKNITGKIVLESGLHISGGDTEMHIGGVDNSVIKDSLSKAPYIPGSSLKGKVRSLLEYFVNAQLKTDGKPLQYNNLENSSDEEEKNIVKLFGTGGSEKNRDNFNPDYAITRVIFSDCYLNKDSEEELLKKVGKLTEIKAENSIDRVNGTAESPRFIERVPKGAIFDFDVSIRLFPKDNEENLMGTLLKGFKLLTFDALGGSGSRGYGKVNMKFDQEETQKQFDSIQI
>NC_015672.1|WP_013886476.1|1434153_1434576_-|type-III-A-CRISPR-associated-protein-Csm2
MARQENSSDVVKTSFKKYEFSDLIKTKAKEVAELMKKEHDDRKINKNSQIRKFFDDLYSVKNTIDSSSDKEKSFNENLPMIYLVASKGAYAKGRKHIGQNFYNFLSNNITTIDTLDDFEKFISYFEAILGYYRYLNPKEN
>NC_015672.1|WP_041262310.1|1434568_1435228_-|hypothetical-protein
MFFAYYLPHICKKYFGNVYTVFAGGDDLFLIGPYDEILELNFLINHEFFKFSGCNEELTLSSGISIAKHNTPLFFISEMAENNLNISKNYPDNPLSKGYTHVFGATEKTEEFKDEFDNLYNFISSSILNHLQNNTSFWYKLLGILDMRININENIRNIMWMPRLKYLFARSFPNKNKETESEFKKFIYTMTDRNPSLLRALITKFLYAKKYKILGGQNG
>NC_015672.1|WP_013885271.1|1435400_1436768_-|IS5-family-transposase
MRPKKQDSTTQELLEPLLVNIIDMKHPLIQLADKIDWEYFEKEFGSLYHRNDGRPGIPIRMMVGFHYLKYTYNLSDEDVVHGWKENPYWQYFTGEKVFQTKVPINPTSMTRFRNRLKEEDLLKFLEETINTAFRSGYLNKNDVKKVAADTTVQEKNITFPTDIKLFYTMIKYLVKFSKKHEIRLKETHEYSGKKLLMKYSGYVHAKQYKRAGKAVKKMKTKMGKLYRSIERVLPEELRNSDEFQQLKLFYESLWNRSKKSKNKLYSLHSPEVECISKGKSHKRYEFGNKVGFVGTLKKNFILSCKSFHGNPYDGHTLEENLCEAKTLLGSNGTIDTILVDLGYRKHNYRGDAKVHVVPRSMKKFKVNFKRLLKRRSCVEATIGHTKRDNRMDRNYLKGKEGDKANAILAASGHNLRLILAFLLFFLKKFMDNIAKKLANFANEVFLDKKYAKIYV
>NC_015672.1|WP_041262311.1|1436818_1438516_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MDDNTLKNTLVGLAALLHDIGKAYQRSGKKLSSKYKNTEEWQILLNKYSHYHSLHTAEFFDNQIENSYINKLWSESFPEISMQKASAGHHNPQDYLTQIVAISDQIASGFDRERYEIRSNKKPYDYRKVHLAPLLKHVSLQKDIVDKDYRYNLEEISVNSIFPVHKNELSNIKVEEKYENLVNNFEKDLKKIFANKKFDIFISEIQTIFEKYFSFVPSSTLDEYDEISLFDHSKTSAAFAASTYDYFSKENLDKLNYNQIKDKNLYMLIRGEFFGIQKFIFGDDTENSQNTAKALRGKSFYVSILSQLTAYHIIKEIKLPSFNIMLNAAGMFVILAPNKETVKQKIKDIKAEINDWLYDTFYGEVSFGIVNVESSPKDYIDKRFEKLWLDLISLMEHEKYAKFNLTKRKSLFEDYHKEFDVSGSCNTCGKRSATNNNNCEMCNTFIDIGKQLVNNRYLHLYEKKKGEFFQRYSIKFSNEIQLSNEYIDVLDLEPLKSYEGGSIVYINNYVPKNNYEIMSFEEIVENNNSERKKPLGILKADVDNLVSPEKLDNYLIILELTKEIC
>NC_015672.1|WP_013886477.1|1438516_1439689_-|DUF1887-family-protein
MADNILITMVSDQTVPNIVFVKEAIDKFGCNKFVFVTTKEMKEKNKTKNIQKVCNLSDESLQVLVVESDDFNDNLKKLNSLDIRNSDKIYANLTTGTKIMSLALFEFAKNYVKSENLYYFTFGKDTFVNILSGATYRVENKITIQEYLDAYGVNISNKDKLQNKKECAEKRKELTYQIWNLFNNNPSEIKENAEKIRTYFNSSKVKGKEKKINIEELKTNASYFINKLNLNFDNETKKRLKHWIEYLTGGWFEELIYFKTKEFLEIENNEYIQIGMEIEHGGKNELDVAVCYNNNLYYLECKTGLGEKERDVLTGTFYKLSHLKDNENFGLGMTNALISLDDKVLYDKKGELQAKYKDSVRYYRLKFFGWKDIKEKGLENIIKEIFNKGE
>NC_015672.1|WP_013886478.1|1439681_1440593_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MFIKYQKYDFTIQFSETTYSDVFPAFLLRSVLGKELKSFACVLRRRKCEGCPLKFQCAYSYIFESPISKDNEFLKGRDKVSHPFTISCSEDADKKLDSLHFRLTLFGRGIDYFPYIFYAFKKGGESGLFRRKTKYDIVSIFADGKMVNDGESEELGIPEPKDWELSTGTSEIYKKISINMDSPLRLKINGKYTDKITYRDFLYAAVRRAEILSSKYGINNVDTHLTKKLSEKSENICIYWKDYDRYSARQKQKMKLGGCLGTMDIEGNFNSYELSLFNFCEIFGLGKNTAFGFGNVSVEVSDG

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Crispr_ID: NC_015672_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015672_3

1709332-1709573

TypeIII

Consensus_repeat	Method
TTATGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	PILER-CR
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CRISPRCasFinder

2 spacers

csx20,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas6

The CRISPR arrays of NC_015672_3

>merge|NC_015672|3|1709332-1709573|PILER-CR,CRISPRCasFinder
TTATGTCGTAATCCCTTCAAAACATTTGCGCAATATCTCATCGCAAATGTTTCTGTTCAGAGCTTGCTGGAAATCAGGTCATTAATTCCAATAGTATATCTTAACTTAACAAATGGATTAGAAGACTTTTGTCGTAATCCCTTCAAATCAGGTCATTAATTCCAATTCGGGTGCTGCGTATTATGCAACTGCTCCCACGGAAGGGGTCGTAATCCCTTCTAATCAGGTCAATTCCGAAAATA

>NC_015672|3|5|1709332-1709497|PILER-CR
TTATGTCGTAATCCCTTCAAAACATTTGCGCAATATCTCA	TCGCAAATGTTTCTGTTCAGAGCTTGCTGGAAATCAGGTCATTAATTCC
AATAGTATATCTTAACTTAACAAATGGATTAGAAGACTTT	TGTCGTAATCCCTTCAAATCAGGTCATTAATTCC
AAT

>NC_015672|3|3|1709462-1709573|CRISPRCasFinder
GTCGTAATCCCTTCAAATCAGGTCATTAATTCCAAT	TCGGGTGCTGCGTATTATGCAACTGCTCCCACGGAAGGG
GTCGTAATCCCTTCTAATCAGGTCAATTCCGAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015672.1\|WP_013886719.1\|1703239_1706488_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224000
NC_015672.1\|WP_013886732.1\|1721779_1722691_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_015672.1\|WP_013885895.1\|1707786_1709154_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_015672.1\|WP_013886718.1\|1700229_1703247_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NC_015672.1\|WP_013886729.1\|1716940_1719643_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_015672.1\|WP_013886725.1\|1713351_1714668_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NC_015672.1\|WP_013886726.1\|1714651_1715074_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_015672.1\|WP_013886721.1\|1706841_1707243_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NC_015672.1\|WP_013886713.1\|1696327_1696960_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886715.1\|1697555_1698053_-\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886728.1\|1716039_1716948_-\|CRISPR-associated-protein,-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_015672.1\|WP_013886730.1\|1719633_1720527_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_015672.1\|WP_013886722.1\|1707264_1707711_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886731.1\|1720527_1721787_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_015672.1\|WP_013886714.1\|1697020_1697518_-\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886733.1\|1722808_1724224_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|214633
NC_015672.1\|WP_013886727.1\|1715070_1716024_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_015672.1\|WP_013886717.1\|1698624_1700028_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224586
NC_015672.1\|WP_013886720.1\|1706613_1706841_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NC_015672.1\|WP_013886724.1\|1712960_1713365_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown

Protein	Function_ID	Function_description	E-value
NC_015672.1\|WP_013886732.1\|1721779_1722691_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	9.93132e-07
NC_015672.1\|WP_013885895.1\|1707786_1709154_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	6.68576e-18
NC_015672.1\|WP_013886718.1\|1700229_1703247_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	6.92252e-36
NC_015672.1\|WP_013886729.1\|1716940_1719643_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	8.81656e-86
NC_015672.1\|WP_013886730.1\|1719633_1720527_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.15231e-24
NC_015672.1\|WP_013886726.1\|1714651_1715074_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.10932e-38
NC_015672.1\|WP_013886721.1\|1706841_1707243_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	8.25458e-59
NC_015672.1\|WP_013886733.1\|1722808_1724224_+\|cold-shock-protein	gnl\|CDD\|214633	smart00357, CSP, Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.	0.00107299
NC_015672.1\|WP_013886728.1\|1716039_1716948_-\|CRISPR-associated-protein,-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.86242e-31
NC_015672.1\|WP_013886731.1\|1720527_1721787_-\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	3.96165e-65
NC_015672.1\|WP_013886725.1\|1713351_1714668_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	7.34129e-47
NC_015672.1\|WP_013886727.1\|1715070_1716024_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.32876e-59
NC_015672.1\|WP_013886717.1\|1698624_1700028_+\|ATP-binding-protein	gnl\|CDD\|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.06798e-38
NC_015672.1\|WP_013886720.1\|1706613_1706841_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	2.12567e-12
NC_015672.1\|WP_013886719.1\|1703239_1706488_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	4.77727e-108

>NC_015672.1|WP_013885895.1|1707786_1709154_-|IS5-family-transposase
MRPKKQDSTTQELLEPLLVNIIDMKHPLIQLADKIDWEYFEKEFGSLYHRNDGRPGIPMRMMVGFHYLKYTYNLSDEDVVHGWKENPYWQYFTGEKVFQTKVPINPTSMTRFRNRLKEEDLLKFLEETINTAFRSGYLNKNDVKKVAADTTVQEKNITFPTDIKLFYTMIKYLVKFSKKHEIRLKETHEYSGKKLLMKYSGYVHAKQYKRAGKAVKKMKTKMGKLYRSIERVLPEELRNSDEFQQLKLFYESLWNRSKKSKNKLYSLHSPEVECISKGKSHKRYEFGNKVGFVGTLKKNFILSCKSFHGNPYDGHTLEENLCEAKTLLGSNGTIDTILVDLGYRKHNYRGDAKVHVVPRSMKKFKVNFKRLLKRRSCVEATIGHTKRDNRMDRNYLKGKEGDKANAILAASGHNLRLILAFLLFFLKKFMDNIAKKLANFANEVFLDKKYAKIYV
>NC_015672.1|WP_013886722.1|1707264_1707711_+|hypothetical-protein
MSDICFLRPTAAKRIENWLNSNNYSLHNGYFTLEYNFSPIVDDGIILSFIDNKTGDIHKLVVQDDIEGIIEPDEECSVSQISIDYIPLSLELTPETLEKFSEIESRKFEAEVEELVEPVGCGIKFEIYSDSYAIFACKKELQRTQIGE
>NC_015672.1|WP_013886721.1|1706841_1707243_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MSYLFDTNICIYIIKNKYKQIAKKMQEAGLEKICISAITVAELEYGISKSSKKDENRIALLEFLIPFTVLNFDQNDARKYGQIRYNLQKAGTPIGNMDLLIGSQALARDMTLITNNEKEFSRIQGLKIENWIK
>NC_015672.1|WP_013886720.1|1706613_1706841_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MDTAKIFENGKSQAVRLPKKYRFDSDDVFIKKIDDIVVLIPKDKVWQIFSSSLDKFSEDVDFQKDNSIPQEREEI
>NC_015672.1|WP_013886719.1|1703239_1706488_+|UvrD-helicase-domain-containing-protein
MSDQALKDSHARKKIINDLDTNFLVEAGAGSGKTSSLVKRITSLITNGKNKISEIAAITFTKKAASELMERLLNELEDRHNSETDPTIKENLYDAINNFDQCFTGTIHSFCSGILRERPVEAGVDPDFDEIDDSDEFGLITEVWNEFIKSTRAENPDMLKLTEKIGVSPEELQDSFVMLNKYPEIKIHAEKSEKPDLKPAVKKVLEICKEASKYIPDEEPDKGYDAFQKNVQSTLRLLEYRNLYEDKYAIEILTKFEKTPKITQNRWLDKKTAKNFQDVILPDLVENTVYPVLRKHREHIYTYFIDFFQDALTYYENKRNQESILNYNDLLTLTSKMLRNNSKVREYFQNKYKTTLVDEFQDTDPIQAEIIMYLTGEDLKETDWSKLRPKKGSLFVVGDPKQSIYRFRRADIDIYNFVKEIISQTGGEILELTSNFRSLNSIADYLNPVFEERFPESGDRYQAPMAKIRAIRENNYEHGVKKILVQCDSRKKEDVVEIDAENIARYIKYAVDGGIKLARNEEEKSKGLNEKPVYSDFLIITKHKDLLEQYANTLEKYGIPSTVTGDDFFSQSEEINHIYKLLKFLSKPDDEILLVSVLRGMFFGLSDNDLYQFKASNGYLNIFSSIPESLDENIKNLFNNCFSTLRKYKKIINELPPSSALETIFQDLGILPYTSLKNLSKSRAANIYFLIEQVKQKETTEFYSFGNVVNHIGRLLESKFEQRNSLEVESNCVRIMNLHKAKGLEAPVVFLAHPHKNTKHDPTQHINRREGEPIGYFALTKKKGIHHKKIFAQPKNWEEFQEEEQKFLDAEFERLVYVAATRAKNLLIISCKEKGNGSQNPWLSLLGNLKDDDVIDVPDVSIEHDSGVNELSVKDINDKKAEISHWRHSVSEENYSNMTPTEVKDLEKIFAGERLEGGGQDWGTAVHNFLEFAVMTKDTGYEDLDTYIKFTFEELDISSDRTEEAKKIIEDFKQTDLFNRIKNAEQVETEAPISMKINPESEIMNLFNTKTSNKPIILAGVIDLVFKEKDGWVIIDYKTDRVNSEEEYEKLRQAYLNQVEIYAKAWEEITGEKVKEKNIYFV
>NC_015672.1|WP_013886718.1|1700229_1703247_+|PD-(D/E)XK-nuclease-family-protein
MKSVLKSLENICSKNITKRKILVMPSYTEGLSLLNALALNNVNIANIKVETPLSLAKDISKMSLYKSGKDFLDRSSARYVVLNLFNQLLTENKLKYFQQLSPSVGVISELENVLYELRITDYTHINFPVNSFIDPEKEHDIKTLLQKYENYLENNNRIDEPGLYKHSIQMLQKDSFHKDKLFLIPANLELPLLSKSFISMLTKNNHEIIKFAQLKSLNVPENYYSNNPYSDTIDNCFSWLYELNNSENLDKNPGFEIYRAYGESNEAKKVIRVLKRDAINLDDAVIYTTSSQLYNQILYDLSCTYNIPMTFEEGISVSNTSPGKLLLSVLEWISEKYSVPKFCTMSTGGFFKFSNNEISPLKISKILKESKIAWGKKRYKKILENELTNTTNDYKIEILNVVLSELNSIFDEIPDTENTSSISLSEFSKGLVNILNKHTRIRNETDASALTTLTENLSNLADYSTQEFQEKEIIKMLKKLVYGININASSAKPGHIHVTNFQNGIWHNRKHNFILGLDAEKFPGKGGESPFLLDMEKERIGKIQTSIQRKSRNIYKMTELLANTNGKIYAMFTNYDTEAARLQSPSSLLLQIYRLQEKLDKSTPDKEHIESYLPFKNSEKEILDETELWLHKAFYSGGIKNNEEIFPSVYPVFNKGLFALSERQSSINEYNGCELNISDEIVNKLLYEKTFSNSKLETMGSCPLRFFFQHILYLKPLEEYEYDPWRWLDPLERGTLLHRIFELFYKELINKKEMPELDKHMGLLENIAKTETEELKDLLQPPSETVYESEFNEILDSCRIFLQKESTKLSKEGHPLYLELYFGNYPESEGSSFPTAVFTLPSGRKIQLSGRIDRIDQLNNGSYKIIDYKTGSTRDYSSNEYFKKGKQLQHALYSLAFEKLMGNKYKISQSGYYFPTTKGEGSEYMYPPSDGKHKREEVLEIVDILLDNIENRFFPPVKYDNKNDSCRFCDYKEICDREKNDSLTKMLEYEENKYLQNYRRIESYE
>NC_015672.1|WP_013886717.1|1698624_1700028_+|ATP-binding-protein
MNTPDFLNREKELNFLHSQFARKEASFIVIYGRRRVGKTSLIKEFIKDKSSLFFMADKQSEKGILDRFAKTASTFLEDEFLEKLTFNSWEDFFGYITQKLDESKKYVLVIDEFQYLPDINHAFPSILQRIWDEKLKDKNIMLILCGSLINMMYSTTLSYQSPLYGRRTGQIKLDPISFDYCHNFFPNIDERKLIEYYSVTGGIPKYMEMFDATNDILYDIKTNVLSKNSYLYNEPRFILNEEVTETATYFSILKAIAAGEHKIGKIASIVGVKTNVLAKYFNVLADLQIIERQVPVTEENPEKSKKGLYFIKDNFFRFWFRYIFPYQSFLEIERDDVVLKEIQKSFNIFVSFVYENLCLQKIPDLTQNGVINFKIEKWGRWWSKDEEIDIVATSKKDKNILFGECKWSDTPIGVSVYADLKAKAKNVKWHTDERNEYYILFSKSGFTEDLMDINEKTSSLILIDSIV
>NC_015672.1|WP_013886715.1|1697555_1698053_-|hypothetical-protein
MSKQKRVKDQFNWTPPHEQKGRFVFPLSDKVEERKPLLWLVRTNSEKNMVDDVFLVNLTGEVLDMVAAGNTGFQSIDDEEQVNLISGSRFVYENVETNEAVKVEEYDGILDYDSMLGITLYIKSKKLGNIQIGTDVKKGGVENMVLLWDTGETGKKAGVSEWDDD
>NC_015672.1|WP_013886714.1|1697020_1697518_-|hypothetical-protein
MKKSVEIVKFKQMYDFIIFLLSKTCNEISQEKLNNELRNSFITGICECISDKNDEFYGKCCGTFYLNTMSEKEGIFSADDYFLFFSNIGIFIFHTDNKGHLKECEFFYESEYFPEFYLEILKEFKTDSGFKNYMKYLKVNDVKLRTLAELKEVFSIEKTNVIEVE
>NC_015672.1|WP_013886713.1|1696327_1696960_+|hypothetical-protein
MKSVSYAINNILDACNKEDGLWIGNTRKGIEVSEKKEIENLFDLIISGNTILDNILILEIEEPCFSRKFIANYWSDLNLKKFFQKRNSQKTLLLCNGQSLQDIYIGLKGSYDKQELYFNVISSSSQNSKTTNKFKFLPYPYIEKTGVWIKAKDLINSEVNPDKIIKKIGNKIPENVISKKYDLIKANIQSFINEFSIKKNAHIKIINVNN
>NC_015672.1|WP_013886724.1|1712960_1713365_-|hypothetical-protein
MNYYKTNKNLLLIFSHSLTNVQIEDAHSMNITSFVYLPDDLQNIWSNIRPEGDLPVSDLDRIVDWIDANSSKGDFALVQGDFGATYYIVNRCFDMGLIPVYSTTKRIASEESISASEVGKQSVFEHVNFRRYVK
>NC_015672.1|WP_013886725.1|1713351_1714668_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIPVHKEIKDLVTKDKFNQGNFGLWFYKFVFLDGNTLKSGVNDVNDYKDQYENLREYNRFLKELIETKHLNQYAFCKSKEKTHKILTFRATLSSPMVTGIGNAHPCEVGMTFDHSLGIPYIPASSIKGIVRFAHTLSLVDEAYGKNIVDEEGWFDDEADWTKIPTIFGTSQDNGRRGKVIFLDAYPEKTPYLHVDIMSPHYGPYYSEFKPPADYYDPTPIKFLTVAKGTTFIFRVLIDKETKDIEQIMHDVSSAVKNSLEKDGVGAKTAVGYGRFTIESNEEPQDLIDAYEEKFLTEEEKLKREIKSFIDKIQVTNDNSSIDSLFQQWENNDKINDNKEIAETFKKKVKKTKANGEFTAHYKKVAEILDINLEESFGKDISEETERQTDNDIENDLKKALRKIKKANGDKKKIKRILKDHKKIKDKILEECPDLNELL
>NC_015672.1|WP_013886726.1|1714651_1715074_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MRTLGQKRAEYALEKVLTISCDKKDFKSLSSGVPSMILQNGFGQTMAFLVAKGTDKDMKIKENDKHIVMFRIIKEWLIKELSTVGFNKNNNEKEFIKEISQLSQMDYLTAQKETLALLEWVKRYANAWFSGEESKNDTGS
>NC_015672.1|WP_013886727.1|1715070_1716024_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKEICSILSFYAVSPIHAGSGASVATVDLPIQRERHTGYPIIQASGVKGAMRDHFRNNVKNKSDREYLTNWIFGIDKDNDGEVVFKDGNYVSEKLEENKNYKKLEDKENKITSFPGSISVSDAKLLAFPMRSNLAPFVWVTSPTILKKLTKDLEYLNISETFGDLNIEEDNAKIIKGNFNDNSRIILEDVTVNVNANEKLESEFLNDKFPQVERLLLISDEMFDYCVTSCTEVQTNIKINSEKGTAAEGGLRYQEFLPSDSVLYSVVYFSGKSNELQADAIKKYLQESIDSFFQIGGDITLGKGICNVSWIDGGTK
>NC_015672.1|WP_013886728.1|1716039_1716948_-|CRISPR-associated-protein,-Cmr3
MYNWYSFEPNDTVFFRGAEPMEKGEDHNANFNFPPPVHTMAGAIRTYFYNIDKKNNEDKFSDIVRIGEEYGGFKLVGPFFKIDEKIYLPAPYSWFVEKSCATSENGKYNIIKGFSIQSDLIKTSSDDLYWAKGESELESIGGKWINYNDLINGSDKAEVKDVKDFYVSELRTGIALNKDHTARESHIYSFNHCRLKKGVSFIFGIDIDDLGNGGILTLGAEQRFGKFKKEDLEINLNTNGELFMSLSLMPASAKVNDSVISTGKIQYLGGWDLHKRFHKPMKGYFPAGTVFNSNFDNCISIN
>NC_015672.1|WP_013886729.1|1716940_1719643_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MAINLPANYWDNKFWAYMHDPFDKCFDIKGHVERAKEIVSIFGIDSPNQDFWKKADGIASGFERGQIVGYSSDEEKSGAVDFLKNPVITHPTGEKSHLKFDLSDASAKQIWEKLKNYLEKEIGKEAGTGGYSDQFEGKPNDFKKARFLYTHLVLRFRLAQDNVGDIGALWHRLPADTRFPDHSIWQHNALVSAIQSCFELGGKDDLGMMVFNISPVQAFISKARKLRDYWTGSVFLSYLAFEGIRWVVENLGPDHILYPSLIDQFLVNEYLRKEWKVKYGVNFLNKESDIASFPNKFLFLLPFSKSEEIAEEVEKSIKQAWKEIYSSVKEGIFQELHMNSDERSYIDSIFNRQNDNFWEFKWASVKMLKEENKDEIKSLLPSKVYNANFDVLKCFNDMIKDKKYYEKSGIGTLYSVSHSLCQSALAAEKNRKTIEREPEPGEKCHICGEFEVVHSNPYEKGMSANEYKTNIDNFWKNLKESWEGEDGSDLKDNEKLCSICLTKRLSYYYIKKYKEHLLFKTFKDSSNFPSTTYMALHDYYIREGIEDENEKIEKAQGIHDSHVSDKEMRYSDKYYALLLMDGDRMGKLVNGETIASTWESIMHPEIFDKLQNGKIESPYSENWQKIFQESPKRNLTPAIHSAISESLGDFAIYGVANIVNNYDGKLIYAGGDDVCAVLPVSNVLKAAEEINDYYKSTFKLIESNQNKINISNISENFKPNPGKLSLSLGKGEEISISAGALICHHKADLTHMIKEAHNLLDKKAKDEGGRNAIAIQLKKRSGGDRFFICKWDDKERLKAFLSIQNKMGEEMSRSLAYRLAELKDGIDAIKNLKGHQESEQNDLLEKFILKQLDRSGKKSEEKEEIAANISKIIFDHQDNFSNEGLIIAGFLHRDEEVANV
>NC_015672.1|WP_013886730.1|1719633_1720527_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MGFNIARYRDIEEKIYEMEIVTPMFLGGADQNDAELRIPSIKGMLRFWWRALYGTDDLEQTIKNESEIFGNTDYKSPTTISFKNQNISISNEKLDNNNFSIYEYLAYGYRVKNNIKNYIEPKSSFSLKLSTLKMQEIENSINALCSFGGLGSKSRNGFGSLKIIDSKKFNTLDFLNQFRKRDMTTYTTISKQSKILFGKQHKTWKEALAEIGELYKQSKYFLKYQGDKRQLIAKSQGSRYAKPYFLHISKLDNDQYQGQILFMPYEYKDSSKTDEYLDTCEQMNEKIEELAGGNKWQ
>NC_015672.1|WP_013886731.1|1720527_1721787_-|TIGR02221-family-CRISPR-associated-protein
MGRKVFLSFLGTGDYKNCNYYFDNQKIDNIIYIQEAVLRIFCKDWYKSDAGFVLTSSDAKNKHWQNLKNGLQDLPFSVEHVDIPTGSCENEIWDIFQTIIDIIKEDDEILIDITHGFRLMPVILSSAISYLESIKKVKIIGIYYGAFETLGTQSEVEKMPVEERNAPIFDLTPTFTIQKWAKAAEIFEETGSVKQIRNLSLIEVSSILKETKGKNQEAQKIKKVVSELYKFVNEIEACRSKETVTKNFQQLKTEINDLKELGVVKPLEGILEKIHKNVSNFQNDIFENSFAIIKWCISYGLVQQAYTFLSETVITFFTKLDYGFDKIWDRDIREKVSYSINSYFKDGANEENISNIKNSINWLSGTDKDEFYNKMDLLKKYRNDMNHCGYREDSLDYKKLTEKIKELNQYFYKILCKGE
>NC_015672.1|WP_013886732.1|1721779_1722691_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MFIKYQKYDFTIQFSETTYSDVFPAFLLRSVLGKELKSFACVLRRRKCEECPLKFQCAYSYIFESPISKDNEFLKGRDKVSHPFTISCSEDADKKLDSLHFRLTLFGRGIDYFPYIFYAFKKGGESGLFRRKTKYDIVSIFADGKMVNDGESEELGIPEPKDWELSTGTSEIYKKISINMDSPLRLKINGKYTDKITYRDFLYAAVRRAEILSSKYGINNVDTHLTKKLSEKSENICIYWKDYDRYSARQKQKMKLGGCVGHMDLEGYFTSYELSLLNFSEIFGLGKNTGFGFGKISVEDLDG
>NC_015672.1|WP_013886733.1|1722808_1724224_+|cold-shock-protein
MADDVVKTGFFAQNSTLNKCNAAILSGISIYNVMIYIGEDMEQLQELRKKANNLKDNRKYEQATEIYKQIIDNHESHCNDWDYWNYAFCLKKQRMYNAASEICKSLLRINKDFVPAKNLLCWCLFYSKIKNKKSEDEFLEASRKVLKLCSQKDKYSPYTITVFKVLEHFKHKNDYPAEKILKCTNMLDPELLNFEPYRIKENDKEIELASQLELYFMHRTKALLNCGKYDQCINECDHALKSLNKFHYNNDIWFKWRMALSYKALAKYKESIEGLYEIATRKKDWFILKEISENLYHQNKVEEAFMYAVKACLRKGDIDKKLNLFLLIADILISLNDKVNAQKHVDFVYHFKIKEERETGTYLNNLISANNFEISEDLDLDMQYKQLVEFWTQIKASRQKRNTGFIKKLLPNGKSGFIEASDGKTYYFQIRNIKNNPANLHESQKVTFCIEDGFDAKKNKPSKIAVEIKTE

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Crispr_ID: NC_015672_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015672_4

1709819-1710226

TypeIII

Consensus_repeat	Method
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CRISPRCasFinder
GTCGTAATCCCTTCAAGTCAGGTCAT	PILER-CR
AAGTCGTAATCCCTTCNANTCAGGTCATNAATTCCAATA	CRT

5 spacers

csx20,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas6

The CRISPR arrays of NC_015672_4

>merge|NC_015672|4|1709819-1710226|CRISPRCasFinder,PILER-CR,CRT
TCCGAGCTTGCTGGAAATCAGGTCATGGATTCCAATGGTATAGATAATAAAAAAATTGTCCATGTATTTGATATAGTCGTAATCCCTTCTAATCAGGTCATTAATTCCAATAATAAACTATCCAAGAACTTTTGGAATTGAGATAGAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATTGGTTCAGTACAAAAATAGCCATAAAAAAGCCATTAAAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATATCCGACCAAATTCCATGGTCGGAGCTCTCTTCAGCTATGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATAAATTTCCGGACTGAGGCAATTAGGATGGCAAAAAAAGTCGTAATCCCTTCTAATCAGGTCAATTCCGAAAATA

>NC_015672|4|4|1709819-1710226|CRISPRCasFinder
TCCGAGCTTGCTGGAAATCAGGTCATGGATTCCAAT	GGTATAGATAATAAAAAAATTGTCCATGTATTTGATATA
GTCGTAATCCCTTCTAATCAGGTCATTAATTCCAAT	AATAAACTATCCAAGAACTTTTGGAATTGAGATAGAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TGGTTCAGTACAAAAATAGCCATAAAAAAGCCATTAAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ATCCGACCAAATTCCATGGTCGGAGCTCTCTTCAGCTAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	AAATTTCCGGACTGAGGCAATTAGGATGGCAAAAAAA
GTCGTAATCCCTTCTAATCAGGTCAATTCCGAAAATA

>NC_015672|4|6|1709833-1710142|PILER-CR
AAATCAGGTCATGGATTCCAATGGTA	TAGATAATAAAAAAATTGTCCATGTATTTGATATAGTCGTAATCCCTTC
TAATCAGGTCATTAATTCCAATAATA	AACTATCCAAGAACTTTTGGAATTGAGATAGAAGTCGTAATCCCTTC
AAGTCAGGTCATGAATTCCAATTGGT	TCAGTACAAAAATAGCCATAAAAAAGCCATTAAAAGTCGTAATCCCTTC
AAGTCAGGTCATGAATTCCAATATCC	GACCAAATTCCATGGTCGGAGCTCTCTTCAGCTATGTCGTAATCCCTTC
AAGTCAGGTCAT

>NC_015672|4|3|1709892-1710226|CRT
TAGTCGTAATCCCTTCTAATCAGGTCATTAATTCCAATA	ATAAACTATCCAAGAACTTTTGGAATTGAGATAG
AAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATT	GGTTCAGTACAAAAATAGCCATAAAAAAGCCATTAA
AAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATA	TCCGACCAAATTCCATGGTCGGAGCTCTCTTCAGCT
ATGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATA	AATTTCCGGACTGAGGCAATTAGGATGGCAAAAA
AAGTCGTAATCCCTTCTAATCAGGTCAATTCCGAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015672.1\|WP_013886719.1\|1703239_1706488_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224000
NC_015672.1\|WP_013886732.1\|1721779_1722691_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_015672.1\|WP_013885895.1\|1707786_1709154_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_015672.1\|WP_013886718.1\|1700229_1703247_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NC_015672.1\|WP_013886729.1\|1716940_1719643_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_015672.1\|WP_013886725.1\|1713351_1714668_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NC_015672.1\|WP_013886726.1\|1714651_1715074_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_015672.1\|WP_013886721.1\|1706841_1707243_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NC_015672.1\|WP_013886713.1\|1696327_1696960_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886715.1\|1697555_1698053_-\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886728.1\|1716039_1716948_-\|CRISPR-associated-protein,-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_015672.1\|WP_013886730.1\|1719633_1720527_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_015672.1\|WP_013886722.1\|1707264_1707711_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886731.1\|1720527_1721787_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_015672.1\|WP_013886714.1\|1697020_1697518_-\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886733.1\|1722808_1724224_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|214633
NC_015672.1\|WP_013886727.1\|1715070_1716024_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_015672.1\|WP_013886717.1\|1698624_1700028_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224586
NC_015672.1\|WP_013886720.1\|1706613_1706841_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NC_015672.1\|WP_013886724.1\|1712960_1713365_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown

Protein	Function_ID	Function_description	E-value
NC_015672.1\|WP_013886732.1\|1721779_1722691_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	9.93132e-07
NC_015672.1\|WP_013885895.1\|1707786_1709154_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	6.68576e-18
NC_015672.1\|WP_013886718.1\|1700229_1703247_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	6.92252e-36
NC_015672.1\|WP_013886729.1\|1716940_1719643_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	8.81656e-86
NC_015672.1\|WP_013886730.1\|1719633_1720527_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.15231e-24
NC_015672.1\|WP_013886726.1\|1714651_1715074_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.10932e-38
NC_015672.1\|WP_013886721.1\|1706841_1707243_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	8.25458e-59
NC_015672.1\|WP_013886733.1\|1722808_1724224_+\|cold-shock-protein	gnl\|CDD\|214633	smart00357, CSP, Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.	0.00107299
NC_015672.1\|WP_013886728.1\|1716039_1716948_-\|CRISPR-associated-protein,-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.86242e-31
NC_015672.1\|WP_013886731.1\|1720527_1721787_-\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	3.96165e-65
NC_015672.1\|WP_013886725.1\|1713351_1714668_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	7.34129e-47
NC_015672.1\|WP_013886727.1\|1715070_1716024_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.32876e-59
NC_015672.1\|WP_013886717.1\|1698624_1700028_+\|ATP-binding-protein	gnl\|CDD\|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.06798e-38
NC_015672.1\|WP_013886720.1\|1706613_1706841_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	2.12567e-12
NC_015672.1\|WP_013886719.1\|1703239_1706488_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	4.77727e-108

>NC_015672.1|WP_013885895.1|1707786_1709154_-|IS5-family-transposase
MRPKKQDSTTQELLEPLLVNIIDMKHPLIQLADKIDWEYFEKEFGSLYHRNDGRPGIPMRMMVGFHYLKYTYNLSDEDVVHGWKENPYWQYFTGEKVFQTKVPINPTSMTRFRNRLKEEDLLKFLEETINTAFRSGYLNKNDVKKVAADTTVQEKNITFPTDIKLFYTMIKYLVKFSKKHEIRLKETHEYSGKKLLMKYSGYVHAKQYKRAGKAVKKMKTKMGKLYRSIERVLPEELRNSDEFQQLKLFYESLWNRSKKSKNKLYSLHSPEVECISKGKSHKRYEFGNKVGFVGTLKKNFILSCKSFHGNPYDGHTLEENLCEAKTLLGSNGTIDTILVDLGYRKHNYRGDAKVHVVPRSMKKFKVNFKRLLKRRSCVEATIGHTKRDNRMDRNYLKGKEGDKANAILAASGHNLRLILAFLLFFLKKFMDNIAKKLANFANEVFLDKKYAKIYV
>NC_015672.1|WP_013886722.1|1707264_1707711_+|hypothetical-protein
MSDICFLRPTAAKRIENWLNSNNYSLHNGYFTLEYNFSPIVDDGIILSFIDNKTGDIHKLVVQDDIEGIIEPDEECSVSQISIDYIPLSLELTPETLEKFSEIESRKFEAEVEELVEPVGCGIKFEIYSDSYAIFACKKELQRTQIGE
>NC_015672.1|WP_013886721.1|1706841_1707243_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MSYLFDTNICIYIIKNKYKQIAKKMQEAGLEKICISAITVAELEYGISKSSKKDENRIALLEFLIPFTVLNFDQNDARKYGQIRYNLQKAGTPIGNMDLLIGSQALARDMTLITNNEKEFSRIQGLKIENWIK
>NC_015672.1|WP_013886720.1|1706613_1706841_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MDTAKIFENGKSQAVRLPKKYRFDSDDVFIKKIDDIVVLIPKDKVWQIFSSSLDKFSEDVDFQKDNSIPQEREEI
>NC_015672.1|WP_013886719.1|1703239_1706488_+|UvrD-helicase-domain-containing-protein
MSDQALKDSHARKKIINDLDTNFLVEAGAGSGKTSSLVKRITSLITNGKNKISEIAAITFTKKAASELMERLLNELEDRHNSETDPTIKENLYDAINNFDQCFTGTIHSFCSGILRERPVEAGVDPDFDEIDDSDEFGLITEVWNEFIKSTRAENPDMLKLTEKIGVSPEELQDSFVMLNKYPEIKIHAEKSEKPDLKPAVKKVLEICKEASKYIPDEEPDKGYDAFQKNVQSTLRLLEYRNLYEDKYAIEILTKFEKTPKITQNRWLDKKTAKNFQDVILPDLVENTVYPVLRKHREHIYTYFIDFFQDALTYYENKRNQESILNYNDLLTLTSKMLRNNSKVREYFQNKYKTTLVDEFQDTDPIQAEIIMYLTGEDLKETDWSKLRPKKGSLFVVGDPKQSIYRFRRADIDIYNFVKEIISQTGGEILELTSNFRSLNSIADYLNPVFEERFPESGDRYQAPMAKIRAIRENNYEHGVKKILVQCDSRKKEDVVEIDAENIARYIKYAVDGGIKLARNEEEKSKGLNEKPVYSDFLIITKHKDLLEQYANTLEKYGIPSTVTGDDFFSQSEEINHIYKLLKFLSKPDDEILLVSVLRGMFFGLSDNDLYQFKASNGYLNIFSSIPESLDENIKNLFNNCFSTLRKYKKIINELPPSSALETIFQDLGILPYTSLKNLSKSRAANIYFLIEQVKQKETTEFYSFGNVVNHIGRLLESKFEQRNSLEVESNCVRIMNLHKAKGLEAPVVFLAHPHKNTKHDPTQHINRREGEPIGYFALTKKKGIHHKKIFAQPKNWEEFQEEEQKFLDAEFERLVYVAATRAKNLLIISCKEKGNGSQNPWLSLLGNLKDDDVIDVPDVSIEHDSGVNELSVKDINDKKAEISHWRHSVSEENYSNMTPTEVKDLEKIFAGERLEGGGQDWGTAVHNFLEFAVMTKDTGYEDLDTYIKFTFEELDISSDRTEEAKKIIEDFKQTDLFNRIKNAEQVETEAPISMKINPESEIMNLFNTKTSNKPIILAGVIDLVFKEKDGWVIIDYKTDRVNSEEEYEKLRQAYLNQVEIYAKAWEEITGEKVKEKNIYFV
>NC_015672.1|WP_013886718.1|1700229_1703247_+|PD-(D/E)XK-nuclease-family-protein
MKSVLKSLENICSKNITKRKILVMPSYTEGLSLLNALALNNVNIANIKVETPLSLAKDISKMSLYKSGKDFLDRSSARYVVLNLFNQLLTENKLKYFQQLSPSVGVISELENVLYELRITDYTHINFPVNSFIDPEKEHDIKTLLQKYENYLENNNRIDEPGLYKHSIQMLQKDSFHKDKLFLIPANLELPLLSKSFISMLTKNNHEIIKFAQLKSLNVPENYYSNNPYSDTIDNCFSWLYELNNSENLDKNPGFEIYRAYGESNEAKKVIRVLKRDAINLDDAVIYTTSSQLYNQILYDLSCTYNIPMTFEEGISVSNTSPGKLLLSVLEWISEKYSVPKFCTMSTGGFFKFSNNEISPLKISKILKESKIAWGKKRYKKILENELTNTTNDYKIEILNVVLSELNSIFDEIPDTENTSSISLSEFSKGLVNILNKHTRIRNETDASALTTLTENLSNLADYSTQEFQEKEIIKMLKKLVYGININASSAKPGHIHVTNFQNGIWHNRKHNFILGLDAEKFPGKGGESPFLLDMEKERIGKIQTSIQRKSRNIYKMTELLANTNGKIYAMFTNYDTEAARLQSPSSLLLQIYRLQEKLDKSTPDKEHIESYLPFKNSEKEILDETELWLHKAFYSGGIKNNEEIFPSVYPVFNKGLFALSERQSSINEYNGCELNISDEIVNKLLYEKTFSNSKLETMGSCPLRFFFQHILYLKPLEEYEYDPWRWLDPLERGTLLHRIFELFYKELINKKEMPELDKHMGLLENIAKTETEELKDLLQPPSETVYESEFNEILDSCRIFLQKESTKLSKEGHPLYLELYFGNYPESEGSSFPTAVFTLPSGRKIQLSGRIDRIDQLNNGSYKIIDYKTGSTRDYSSNEYFKKGKQLQHALYSLAFEKLMGNKYKISQSGYYFPTTKGEGSEYMYPPSDGKHKREEVLEIVDILLDNIENRFFPPVKYDNKNDSCRFCDYKEICDREKNDSLTKMLEYEENKYLQNYRRIESYE
>NC_015672.1|WP_013886717.1|1698624_1700028_+|ATP-binding-protein
MNTPDFLNREKELNFLHSQFARKEASFIVIYGRRRVGKTSLIKEFIKDKSSLFFMADKQSEKGILDRFAKTASTFLEDEFLEKLTFNSWEDFFGYITQKLDESKKYVLVIDEFQYLPDINHAFPSILQRIWDEKLKDKNIMLILCGSLINMMYSTTLSYQSPLYGRRTGQIKLDPISFDYCHNFFPNIDERKLIEYYSVTGGIPKYMEMFDATNDILYDIKTNVLSKNSYLYNEPRFILNEEVTETATYFSILKAIAAGEHKIGKIASIVGVKTNVLAKYFNVLADLQIIERQVPVTEENPEKSKKGLYFIKDNFFRFWFRYIFPYQSFLEIERDDVVLKEIQKSFNIFVSFVYENLCLQKIPDLTQNGVINFKIEKWGRWWSKDEEIDIVATSKKDKNILFGECKWSDTPIGVSVYADLKAKAKNVKWHTDERNEYYILFSKSGFTEDLMDINEKTSSLILIDSIV
>NC_015672.1|WP_013886715.1|1697555_1698053_-|hypothetical-protein
MSKQKRVKDQFNWTPPHEQKGRFVFPLSDKVEERKPLLWLVRTNSEKNMVDDVFLVNLTGEVLDMVAAGNTGFQSIDDEEQVNLISGSRFVYENVETNEAVKVEEYDGILDYDSMLGITLYIKSKKLGNIQIGTDVKKGGVENMVLLWDTGETGKKAGVSEWDDD
>NC_015672.1|WP_013886714.1|1697020_1697518_-|hypothetical-protein
MKKSVEIVKFKQMYDFIIFLLSKTCNEISQEKLNNELRNSFITGICECISDKNDEFYGKCCGTFYLNTMSEKEGIFSADDYFLFFSNIGIFIFHTDNKGHLKECEFFYESEYFPEFYLEILKEFKTDSGFKNYMKYLKVNDVKLRTLAELKEVFSIEKTNVIEVE
>NC_015672.1|WP_013886713.1|1696327_1696960_+|hypothetical-protein
MKSVSYAINNILDACNKEDGLWIGNTRKGIEVSEKKEIENLFDLIISGNTILDNILILEIEEPCFSRKFIANYWSDLNLKKFFQKRNSQKTLLLCNGQSLQDIYIGLKGSYDKQELYFNVISSSSQNSKTTNKFKFLPYPYIEKTGVWIKAKDLINSEVNPDKIIKKIGNKIPENVISKKYDLIKANIQSFINEFSIKKNAHIKIINVNN
>NC_015672.1|WP_013886724.1|1712960_1713365_-|hypothetical-protein
MNYYKTNKNLLLIFSHSLTNVQIEDAHSMNITSFVYLPDDLQNIWSNIRPEGDLPVSDLDRIVDWIDANSSKGDFALVQGDFGATYYIVNRCFDMGLIPVYSTTKRIASEESISASEVGKQSVFEHVNFRRYVK
>NC_015672.1|WP_013886725.1|1713351_1714668_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIPVHKEIKDLVTKDKFNQGNFGLWFYKFVFLDGNTLKSGVNDVNDYKDQYENLREYNRFLKELIETKHLNQYAFCKSKEKTHKILTFRATLSSPMVTGIGNAHPCEVGMTFDHSLGIPYIPASSIKGIVRFAHTLSLVDEAYGKNIVDEEGWFDDEADWTKIPTIFGTSQDNGRRGKVIFLDAYPEKTPYLHVDIMSPHYGPYYSEFKPPADYYDPTPIKFLTVAKGTTFIFRVLIDKETKDIEQIMHDVSSAVKNSLEKDGVGAKTAVGYGRFTIESNEEPQDLIDAYEEKFLTEEEKLKREIKSFIDKIQVTNDNSSIDSLFQQWENNDKINDNKEIAETFKKKVKKTKANGEFTAHYKKVAEILDINLEESFGKDISEETERQTDNDIENDLKKALRKIKKANGDKKKIKRILKDHKKIKDKILEECPDLNELL
>NC_015672.1|WP_013886726.1|1714651_1715074_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MRTLGQKRAEYALEKVLTISCDKKDFKSLSSGVPSMILQNGFGQTMAFLVAKGTDKDMKIKENDKHIVMFRIIKEWLIKELSTVGFNKNNNEKEFIKEISQLSQMDYLTAQKETLALLEWVKRYANAWFSGEESKNDTGS
>NC_015672.1|WP_013886727.1|1715070_1716024_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKEICSILSFYAVSPIHAGSGASVATVDLPIQRERHTGYPIIQASGVKGAMRDHFRNNVKNKSDREYLTNWIFGIDKDNDGEVVFKDGNYVSEKLEENKNYKKLEDKENKITSFPGSISVSDAKLLAFPMRSNLAPFVWVTSPTILKKLTKDLEYLNISETFGDLNIEEDNAKIIKGNFNDNSRIILEDVTVNVNANEKLESEFLNDKFPQVERLLLISDEMFDYCVTSCTEVQTNIKINSEKGTAAEGGLRYQEFLPSDSVLYSVVYFSGKSNELQADAIKKYLQESIDSFFQIGGDITLGKGICNVSWIDGGTK
>NC_015672.1|WP_013886728.1|1716039_1716948_-|CRISPR-associated-protein,-Cmr3
MYNWYSFEPNDTVFFRGAEPMEKGEDHNANFNFPPPVHTMAGAIRTYFYNIDKKNNEDKFSDIVRIGEEYGGFKLVGPFFKIDEKIYLPAPYSWFVEKSCATSENGKYNIIKGFSIQSDLIKTSSDDLYWAKGESELESIGGKWINYNDLINGSDKAEVKDVKDFYVSELRTGIALNKDHTARESHIYSFNHCRLKKGVSFIFGIDIDDLGNGGILTLGAEQRFGKFKKEDLEINLNTNGELFMSLSLMPASAKVNDSVISTGKIQYLGGWDLHKRFHKPMKGYFPAGTVFNSNFDNCISIN
>NC_015672.1|WP_013886729.1|1716940_1719643_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MAINLPANYWDNKFWAYMHDPFDKCFDIKGHVERAKEIVSIFGIDSPNQDFWKKADGIASGFERGQIVGYSSDEEKSGAVDFLKNPVITHPTGEKSHLKFDLSDASAKQIWEKLKNYLEKEIGKEAGTGGYSDQFEGKPNDFKKARFLYTHLVLRFRLAQDNVGDIGALWHRLPADTRFPDHSIWQHNALVSAIQSCFELGGKDDLGMMVFNISPVQAFISKARKLRDYWTGSVFLSYLAFEGIRWVVENLGPDHILYPSLIDQFLVNEYLRKEWKVKYGVNFLNKESDIASFPNKFLFLLPFSKSEEIAEEVEKSIKQAWKEIYSSVKEGIFQELHMNSDERSYIDSIFNRQNDNFWEFKWASVKMLKEENKDEIKSLLPSKVYNANFDVLKCFNDMIKDKKYYEKSGIGTLYSVSHSLCQSALAAEKNRKTIEREPEPGEKCHICGEFEVVHSNPYEKGMSANEYKTNIDNFWKNLKESWEGEDGSDLKDNEKLCSICLTKRLSYYYIKKYKEHLLFKTFKDSSNFPSTTYMALHDYYIREGIEDENEKIEKAQGIHDSHVSDKEMRYSDKYYALLLMDGDRMGKLVNGETIASTWESIMHPEIFDKLQNGKIESPYSENWQKIFQESPKRNLTPAIHSAISESLGDFAIYGVANIVNNYDGKLIYAGGDDVCAVLPVSNVLKAAEEINDYYKSTFKLIESNQNKINISNISENFKPNPGKLSLSLGKGEEISISAGALICHHKADLTHMIKEAHNLLDKKAKDEGGRNAIAIQLKKRSGGDRFFICKWDDKERLKAFLSIQNKMGEEMSRSLAYRLAELKDGIDAIKNLKGHQESEQNDLLEKFILKQLDRSGKKSEEKEEIAANISKIIFDHQDNFSNEGLIIAGFLHRDEEVANV
>NC_015672.1|WP_013886730.1|1719633_1720527_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MGFNIARYRDIEEKIYEMEIVTPMFLGGADQNDAELRIPSIKGMLRFWWRALYGTDDLEQTIKNESEIFGNTDYKSPTTISFKNQNISISNEKLDNNNFSIYEYLAYGYRVKNNIKNYIEPKSSFSLKLSTLKMQEIENSINALCSFGGLGSKSRNGFGSLKIIDSKKFNTLDFLNQFRKRDMTTYTTISKQSKILFGKQHKTWKEALAEIGELYKQSKYFLKYQGDKRQLIAKSQGSRYAKPYFLHISKLDNDQYQGQILFMPYEYKDSSKTDEYLDTCEQMNEKIEELAGGNKWQ
>NC_015672.1|WP_013886731.1|1720527_1721787_-|TIGR02221-family-CRISPR-associated-protein
MGRKVFLSFLGTGDYKNCNYYFDNQKIDNIIYIQEAVLRIFCKDWYKSDAGFVLTSSDAKNKHWQNLKNGLQDLPFSVEHVDIPTGSCENEIWDIFQTIIDIIKEDDEILIDITHGFRLMPVILSSAISYLESIKKVKIIGIYYGAFETLGTQSEVEKMPVEERNAPIFDLTPTFTIQKWAKAAEIFEETGSVKQIRNLSLIEVSSILKETKGKNQEAQKIKKVVSELYKFVNEIEACRSKETVTKNFQQLKTEINDLKELGVVKPLEGILEKIHKNVSNFQNDIFENSFAIIKWCISYGLVQQAYTFLSETVITFFTKLDYGFDKIWDRDIREKVSYSINSYFKDGANEENISNIKNSINWLSGTDKDEFYNKMDLLKKYRNDMNHCGYREDSLDYKKLTEKIKELNQYFYKILCKGE
>NC_015672.1|WP_013886732.1|1721779_1722691_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MFIKYQKYDFTIQFSETTYSDVFPAFLLRSVLGKELKSFACVLRRRKCEECPLKFQCAYSYIFESPISKDNEFLKGRDKVSHPFTISCSEDADKKLDSLHFRLTLFGRGIDYFPYIFYAFKKGGESGLFRRKTKYDIVSIFADGKMVNDGESEELGIPEPKDWELSTGTSEIYKKISINMDSPLRLKINGKYTDKITYRDFLYAAVRRAEILSSKYGINNVDTHLTKKLSEKSENICIYWKDYDRYSARQKQKMKLGGCVGHMDLEGYFTSYELSLLNFSEIFGLGKNTGFGFGKISVEDLDG
>NC_015672.1|WP_013886733.1|1722808_1724224_+|cold-shock-protein
MADDVVKTGFFAQNSTLNKCNAAILSGISIYNVMIYIGEDMEQLQELRKKANNLKDNRKYEQATEIYKQIIDNHESHCNDWDYWNYAFCLKKQRMYNAASEICKSLLRINKDFVPAKNLLCWCLFYSKIKNKKSEDEFLEASRKVLKLCSQKDKYSPYTITVFKVLEHFKHKNDYPAEKILKCTNMLDPELLNFEPYRIKENDKEIELASQLELYFMHRTKALLNCGKYDQCINECDHALKSLNKFHYNNDIWFKWRMALSYKALAKYKESIEGLYEIATRKKDWFILKEISENLYHQNKVEEAFMYAVKACLRKGDIDKKLNLFLLIADILISLNDKVNAQKHVDFVYHFKIKEERETGTYLNNLISANNFEISEDLDLDMQYKQLVEFWTQIKASRQKRNTGFIKKLLPNGKSGFIEASDGKTYYFQIRNIKNNPANLHESQKVTFCIEDGFDAKKNKPSKIAVEIKTE

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Crispr_ID: NC_015672_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015672_5

1710472-1710885

TypeIII

Consensus_repeat	Method
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CRISPRCasFinder
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CRT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	PILER-CR

5 spacers

csx20,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas6

The CRISPR arrays of NC_015672_5

>merge|NC_015672|5|1710472-1710885|CRISPRCasFinder,CRT,PILER-CR
TCCGAGCTTGCTGGAAATCAGGTCATGGATTCCAATGTTGAAGCACTCGGCGCAGTTCTATCTTTTGAGCAGAGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATAGAGAGATTTCTCCATTTCCTAAATTTAATACAGTTGATGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATCTTCCGGAGGGTTTTAGATTTAAGTACCTCAAAGTCGAGGTGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATATATGTCGCCCAGCTCATGGGCGGCAGGTTGCCGGAAGGGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATTACACAACTAAAACAGATACTTTGATTATTGTCTTTTCCTAGTCGTAATCCCTTCTAATCAGGTCAATTCCGAAAATA

>NC_015672|5|5|1710472-1710885|CRISPRCasFinder
TCCGAGCTTGCTGGAAATCAGGTCATGGATTCCAAT	GTTGAAGCACTCGGCGCAGTTCTATCTTTTGAGCAGA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AGAGAGATTTCTCCATTTCCTAAATTTAATACAGTTGAT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CTTCCGGAGGGTTTTAGATTTAAGTACCTCAAAGTCGAGGT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ATATGTCGCCCAGCTCATGGGCGGCAGGTTGCCGGAAGG
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	TACACAACTAAAACAGATACTTTGATTATTGTCTTTTCCTA
GTCGTAATCCCTTCTAATCAGGTCAATTCCGAAAATA

>NC_015672|5|4|1710472-1710884|CRT
TCCGAGCTTGCTGGAAATCAGGTCATGGATTCCAAT	GTTGAAGCACTCGGCGCAGTTCTATCTTTTGAGCAGA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AGAGAGATTTCTCCATTTCCTAAATTTAATACAGTTGAT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CTTCCGGAGGGTTTTAGATTTAAGTACCTCAAAGTCGAGGT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ATATGTCGCCCAGCTCATGGGCGGCAGGTTGCCGGAAGG
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	TACACAACTAAAACAGATACTTTGATTATTGTCTTTTCCTA
GTCGTAATCCCTTCTAATCAGGTCAATTCCGAAAAT

>NC_015672|5|7|1710487-1710807|PILER-CR
AATCAGGTCATGGATTCCAATGTTGAAGCACTCGGC	GCAGTTCTATCTTTTGAGCAGAGTCGTAATCCCTTCT
AATCAGGTCATGGATTCCAATAGAGAGATTTCTCCA	TTTCCTAAATTTAATACAGTTGATGTCGTAATCCCTTCT
AATCAGGTCATGGATTCCAATCTTCCGGAGGGTTTT	AGATTTAAGTACCTCAAAGTCGAGGTGTCGTAATCCCTTCT
AATCAGGTCATGGATTCCAATATATGTCGCCCAGCT	CATGGGCGGCAGGTTGCCGGAAGGGTCGTAATCCCTTCT
AATCAGGTCATGGATTCCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015672.1\|WP_013886719.1\|1703239_1706488_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224000
NC_015672.1\|WP_013886732.1\|1721779_1722691_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_015672.1\|WP_013885895.1\|1707786_1709154_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_015672.1\|WP_013886718.1\|1700229_1703247_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NC_015672.1\|WP_013886729.1\|1716940_1719643_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_015672.1\|WP_013886725.1\|1713351_1714668_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NC_015672.1\|WP_013886726.1\|1714651_1715074_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_015672.1\|WP_013886721.1\|1706841_1707243_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NC_015672.1\|WP_013886713.1\|1696327_1696960_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886715.1\|1697555_1698053_-\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886728.1\|1716039_1716948_-\|CRISPR-associated-protein,-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_015672.1\|WP_013886730.1\|1719633_1720527_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_015672.1\|WP_013886722.1\|1707264_1707711_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886731.1\|1720527_1721787_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_015672.1\|WP_013886714.1\|1697020_1697518_-\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886733.1\|1722808_1724224_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|214633
NC_015672.1\|WP_013886727.1\|1715070_1716024_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_015672.1\|WP_013886717.1\|1698624_1700028_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224586
NC_015672.1\|WP_013886720.1\|1706613_1706841_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NC_015672.1\|WP_013886724.1\|1712960_1713365_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown

Protein	Function_ID	Function_description	E-value
NC_015672.1\|WP_013886732.1\|1721779_1722691_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	9.93132e-07
NC_015672.1\|WP_013885895.1\|1707786_1709154_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	6.68576e-18
NC_015672.1\|WP_013886718.1\|1700229_1703247_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	6.92252e-36
NC_015672.1\|WP_013886729.1\|1716940_1719643_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	8.81656e-86
NC_015672.1\|WP_013886730.1\|1719633_1720527_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.15231e-24
NC_015672.1\|WP_013886726.1\|1714651_1715074_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.10932e-38
NC_015672.1\|WP_013886721.1\|1706841_1707243_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	8.25458e-59
NC_015672.1\|WP_013886733.1\|1722808_1724224_+\|cold-shock-protein	gnl\|CDD\|214633	smart00357, CSP, Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.	0.00107299
NC_015672.1\|WP_013886728.1\|1716039_1716948_-\|CRISPR-associated-protein,-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.86242e-31
NC_015672.1\|WP_013886731.1\|1720527_1721787_-\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	3.96165e-65
NC_015672.1\|WP_013886725.1\|1713351_1714668_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	7.34129e-47
NC_015672.1\|WP_013886727.1\|1715070_1716024_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.32876e-59
NC_015672.1\|WP_013886717.1\|1698624_1700028_+\|ATP-binding-protein	gnl\|CDD\|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.06798e-38
NC_015672.1\|WP_013886720.1\|1706613_1706841_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	2.12567e-12
NC_015672.1\|WP_013886719.1\|1703239_1706488_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	4.77727e-108

>NC_015672.1|WP_013885895.1|1707786_1709154_-|IS5-family-transposase
MRPKKQDSTTQELLEPLLVNIIDMKHPLIQLADKIDWEYFEKEFGSLYHRNDGRPGIPMRMMVGFHYLKYTYNLSDEDVVHGWKENPYWQYFTGEKVFQTKVPINPTSMTRFRNRLKEEDLLKFLEETINTAFRSGYLNKNDVKKVAADTTVQEKNITFPTDIKLFYTMIKYLVKFSKKHEIRLKETHEYSGKKLLMKYSGYVHAKQYKRAGKAVKKMKTKMGKLYRSIERVLPEELRNSDEFQQLKLFYESLWNRSKKSKNKLYSLHSPEVECISKGKSHKRYEFGNKVGFVGTLKKNFILSCKSFHGNPYDGHTLEENLCEAKTLLGSNGTIDTILVDLGYRKHNYRGDAKVHVVPRSMKKFKVNFKRLLKRRSCVEATIGHTKRDNRMDRNYLKGKEGDKANAILAASGHNLRLILAFLLFFLKKFMDNIAKKLANFANEVFLDKKYAKIYV
>NC_015672.1|WP_013886722.1|1707264_1707711_+|hypothetical-protein
MSDICFLRPTAAKRIENWLNSNNYSLHNGYFTLEYNFSPIVDDGIILSFIDNKTGDIHKLVVQDDIEGIIEPDEECSVSQISIDYIPLSLELTPETLEKFSEIESRKFEAEVEELVEPVGCGIKFEIYSDSYAIFACKKELQRTQIGE
>NC_015672.1|WP_013886721.1|1706841_1707243_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MSYLFDTNICIYIIKNKYKQIAKKMQEAGLEKICISAITVAELEYGISKSSKKDENRIALLEFLIPFTVLNFDQNDARKYGQIRYNLQKAGTPIGNMDLLIGSQALARDMTLITNNEKEFSRIQGLKIENWIK
>NC_015672.1|WP_013886720.1|1706613_1706841_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MDTAKIFENGKSQAVRLPKKYRFDSDDVFIKKIDDIVVLIPKDKVWQIFSSSLDKFSEDVDFQKDNSIPQEREEI
>NC_015672.1|WP_013886719.1|1703239_1706488_+|UvrD-helicase-domain-containing-protein
MSDQALKDSHARKKIINDLDTNFLVEAGAGSGKTSSLVKRITSLITNGKNKISEIAAITFTKKAASELMERLLNELEDRHNSETDPTIKENLYDAINNFDQCFTGTIHSFCSGILRERPVEAGVDPDFDEIDDSDEFGLITEVWNEFIKSTRAENPDMLKLTEKIGVSPEELQDSFVMLNKYPEIKIHAEKSEKPDLKPAVKKVLEICKEASKYIPDEEPDKGYDAFQKNVQSTLRLLEYRNLYEDKYAIEILTKFEKTPKITQNRWLDKKTAKNFQDVILPDLVENTVYPVLRKHREHIYTYFIDFFQDALTYYENKRNQESILNYNDLLTLTSKMLRNNSKVREYFQNKYKTTLVDEFQDTDPIQAEIIMYLTGEDLKETDWSKLRPKKGSLFVVGDPKQSIYRFRRADIDIYNFVKEIISQTGGEILELTSNFRSLNSIADYLNPVFEERFPESGDRYQAPMAKIRAIRENNYEHGVKKILVQCDSRKKEDVVEIDAENIARYIKYAVDGGIKLARNEEEKSKGLNEKPVYSDFLIITKHKDLLEQYANTLEKYGIPSTVTGDDFFSQSEEINHIYKLLKFLSKPDDEILLVSVLRGMFFGLSDNDLYQFKASNGYLNIFSSIPESLDENIKNLFNNCFSTLRKYKKIINELPPSSALETIFQDLGILPYTSLKNLSKSRAANIYFLIEQVKQKETTEFYSFGNVVNHIGRLLESKFEQRNSLEVESNCVRIMNLHKAKGLEAPVVFLAHPHKNTKHDPTQHINRREGEPIGYFALTKKKGIHHKKIFAQPKNWEEFQEEEQKFLDAEFERLVYVAATRAKNLLIISCKEKGNGSQNPWLSLLGNLKDDDVIDVPDVSIEHDSGVNELSVKDINDKKAEISHWRHSVSEENYSNMTPTEVKDLEKIFAGERLEGGGQDWGTAVHNFLEFAVMTKDTGYEDLDTYIKFTFEELDISSDRTEEAKKIIEDFKQTDLFNRIKNAEQVETEAPISMKINPESEIMNLFNTKTSNKPIILAGVIDLVFKEKDGWVIIDYKTDRVNSEEEYEKLRQAYLNQVEIYAKAWEEITGEKVKEKNIYFV
>NC_015672.1|WP_013886718.1|1700229_1703247_+|PD-(D/E)XK-nuclease-family-protein
MKSVLKSLENICSKNITKRKILVMPSYTEGLSLLNALALNNVNIANIKVETPLSLAKDISKMSLYKSGKDFLDRSSARYVVLNLFNQLLTENKLKYFQQLSPSVGVISELENVLYELRITDYTHINFPVNSFIDPEKEHDIKTLLQKYENYLENNNRIDEPGLYKHSIQMLQKDSFHKDKLFLIPANLELPLLSKSFISMLTKNNHEIIKFAQLKSLNVPENYYSNNPYSDTIDNCFSWLYELNNSENLDKNPGFEIYRAYGESNEAKKVIRVLKRDAINLDDAVIYTTSSQLYNQILYDLSCTYNIPMTFEEGISVSNTSPGKLLLSVLEWISEKYSVPKFCTMSTGGFFKFSNNEISPLKISKILKESKIAWGKKRYKKILENELTNTTNDYKIEILNVVLSELNSIFDEIPDTENTSSISLSEFSKGLVNILNKHTRIRNETDASALTTLTENLSNLADYSTQEFQEKEIIKMLKKLVYGININASSAKPGHIHVTNFQNGIWHNRKHNFILGLDAEKFPGKGGESPFLLDMEKERIGKIQTSIQRKSRNIYKMTELLANTNGKIYAMFTNYDTEAARLQSPSSLLLQIYRLQEKLDKSTPDKEHIESYLPFKNSEKEILDETELWLHKAFYSGGIKNNEEIFPSVYPVFNKGLFALSERQSSINEYNGCELNISDEIVNKLLYEKTFSNSKLETMGSCPLRFFFQHILYLKPLEEYEYDPWRWLDPLERGTLLHRIFELFYKELINKKEMPELDKHMGLLENIAKTETEELKDLLQPPSETVYESEFNEILDSCRIFLQKESTKLSKEGHPLYLELYFGNYPESEGSSFPTAVFTLPSGRKIQLSGRIDRIDQLNNGSYKIIDYKTGSTRDYSSNEYFKKGKQLQHALYSLAFEKLMGNKYKISQSGYYFPTTKGEGSEYMYPPSDGKHKREEVLEIVDILLDNIENRFFPPVKYDNKNDSCRFCDYKEICDREKNDSLTKMLEYEENKYLQNYRRIESYE
>NC_015672.1|WP_013886717.1|1698624_1700028_+|ATP-binding-protein
MNTPDFLNREKELNFLHSQFARKEASFIVIYGRRRVGKTSLIKEFIKDKSSLFFMADKQSEKGILDRFAKTASTFLEDEFLEKLTFNSWEDFFGYITQKLDESKKYVLVIDEFQYLPDINHAFPSILQRIWDEKLKDKNIMLILCGSLINMMYSTTLSYQSPLYGRRTGQIKLDPISFDYCHNFFPNIDERKLIEYYSVTGGIPKYMEMFDATNDILYDIKTNVLSKNSYLYNEPRFILNEEVTETATYFSILKAIAAGEHKIGKIASIVGVKTNVLAKYFNVLADLQIIERQVPVTEENPEKSKKGLYFIKDNFFRFWFRYIFPYQSFLEIERDDVVLKEIQKSFNIFVSFVYENLCLQKIPDLTQNGVINFKIEKWGRWWSKDEEIDIVATSKKDKNILFGECKWSDTPIGVSVYADLKAKAKNVKWHTDERNEYYILFSKSGFTEDLMDINEKTSSLILIDSIV
>NC_015672.1|WP_013886715.1|1697555_1698053_-|hypothetical-protein
MSKQKRVKDQFNWTPPHEQKGRFVFPLSDKVEERKPLLWLVRTNSEKNMVDDVFLVNLTGEVLDMVAAGNTGFQSIDDEEQVNLISGSRFVYENVETNEAVKVEEYDGILDYDSMLGITLYIKSKKLGNIQIGTDVKKGGVENMVLLWDTGETGKKAGVSEWDDD
>NC_015672.1|WP_013886714.1|1697020_1697518_-|hypothetical-protein
MKKSVEIVKFKQMYDFIIFLLSKTCNEISQEKLNNELRNSFITGICECISDKNDEFYGKCCGTFYLNTMSEKEGIFSADDYFLFFSNIGIFIFHTDNKGHLKECEFFYESEYFPEFYLEILKEFKTDSGFKNYMKYLKVNDVKLRTLAELKEVFSIEKTNVIEVE
>NC_015672.1|WP_013886713.1|1696327_1696960_+|hypothetical-protein
MKSVSYAINNILDACNKEDGLWIGNTRKGIEVSEKKEIENLFDLIISGNTILDNILILEIEEPCFSRKFIANYWSDLNLKKFFQKRNSQKTLLLCNGQSLQDIYIGLKGSYDKQELYFNVISSSSQNSKTTNKFKFLPYPYIEKTGVWIKAKDLINSEVNPDKIIKKIGNKIPENVISKKYDLIKANIQSFINEFSIKKNAHIKIINVNN
>NC_015672.1|WP_013886724.1|1712960_1713365_-|hypothetical-protein
MNYYKTNKNLLLIFSHSLTNVQIEDAHSMNITSFVYLPDDLQNIWSNIRPEGDLPVSDLDRIVDWIDANSSKGDFALVQGDFGATYYIVNRCFDMGLIPVYSTTKRIASEESISASEVGKQSVFEHVNFRRYVK
>NC_015672.1|WP_013886725.1|1713351_1714668_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIPVHKEIKDLVTKDKFNQGNFGLWFYKFVFLDGNTLKSGVNDVNDYKDQYENLREYNRFLKELIETKHLNQYAFCKSKEKTHKILTFRATLSSPMVTGIGNAHPCEVGMTFDHSLGIPYIPASSIKGIVRFAHTLSLVDEAYGKNIVDEEGWFDDEADWTKIPTIFGTSQDNGRRGKVIFLDAYPEKTPYLHVDIMSPHYGPYYSEFKPPADYYDPTPIKFLTVAKGTTFIFRVLIDKETKDIEQIMHDVSSAVKNSLEKDGVGAKTAVGYGRFTIESNEEPQDLIDAYEEKFLTEEEKLKREIKSFIDKIQVTNDNSSIDSLFQQWENNDKINDNKEIAETFKKKVKKTKANGEFTAHYKKVAEILDINLEESFGKDISEETERQTDNDIENDLKKALRKIKKANGDKKKIKRILKDHKKIKDKILEECPDLNELL
>NC_015672.1|WP_013886726.1|1714651_1715074_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MRTLGQKRAEYALEKVLTISCDKKDFKSLSSGVPSMILQNGFGQTMAFLVAKGTDKDMKIKENDKHIVMFRIIKEWLIKELSTVGFNKNNNEKEFIKEISQLSQMDYLTAQKETLALLEWVKRYANAWFSGEESKNDTGS
>NC_015672.1|WP_013886727.1|1715070_1716024_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKEICSILSFYAVSPIHAGSGASVATVDLPIQRERHTGYPIIQASGVKGAMRDHFRNNVKNKSDREYLTNWIFGIDKDNDGEVVFKDGNYVSEKLEENKNYKKLEDKENKITSFPGSISVSDAKLLAFPMRSNLAPFVWVTSPTILKKLTKDLEYLNISETFGDLNIEEDNAKIIKGNFNDNSRIILEDVTVNVNANEKLESEFLNDKFPQVERLLLISDEMFDYCVTSCTEVQTNIKINSEKGTAAEGGLRYQEFLPSDSVLYSVVYFSGKSNELQADAIKKYLQESIDSFFQIGGDITLGKGICNVSWIDGGTK
>NC_015672.1|WP_013886728.1|1716039_1716948_-|CRISPR-associated-protein,-Cmr3
MYNWYSFEPNDTVFFRGAEPMEKGEDHNANFNFPPPVHTMAGAIRTYFYNIDKKNNEDKFSDIVRIGEEYGGFKLVGPFFKIDEKIYLPAPYSWFVEKSCATSENGKYNIIKGFSIQSDLIKTSSDDLYWAKGESELESIGGKWINYNDLINGSDKAEVKDVKDFYVSELRTGIALNKDHTARESHIYSFNHCRLKKGVSFIFGIDIDDLGNGGILTLGAEQRFGKFKKEDLEINLNTNGELFMSLSLMPASAKVNDSVISTGKIQYLGGWDLHKRFHKPMKGYFPAGTVFNSNFDNCISIN
>NC_015672.1|WP_013886729.1|1716940_1719643_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MAINLPANYWDNKFWAYMHDPFDKCFDIKGHVERAKEIVSIFGIDSPNQDFWKKADGIASGFERGQIVGYSSDEEKSGAVDFLKNPVITHPTGEKSHLKFDLSDASAKQIWEKLKNYLEKEIGKEAGTGGYSDQFEGKPNDFKKARFLYTHLVLRFRLAQDNVGDIGALWHRLPADTRFPDHSIWQHNALVSAIQSCFELGGKDDLGMMVFNISPVQAFISKARKLRDYWTGSVFLSYLAFEGIRWVVENLGPDHILYPSLIDQFLVNEYLRKEWKVKYGVNFLNKESDIASFPNKFLFLLPFSKSEEIAEEVEKSIKQAWKEIYSSVKEGIFQELHMNSDERSYIDSIFNRQNDNFWEFKWASVKMLKEENKDEIKSLLPSKVYNANFDVLKCFNDMIKDKKYYEKSGIGTLYSVSHSLCQSALAAEKNRKTIEREPEPGEKCHICGEFEVVHSNPYEKGMSANEYKTNIDNFWKNLKESWEGEDGSDLKDNEKLCSICLTKRLSYYYIKKYKEHLLFKTFKDSSNFPSTTYMALHDYYIREGIEDENEKIEKAQGIHDSHVSDKEMRYSDKYYALLLMDGDRMGKLVNGETIASTWESIMHPEIFDKLQNGKIESPYSENWQKIFQESPKRNLTPAIHSAISESLGDFAIYGVANIVNNYDGKLIYAGGDDVCAVLPVSNVLKAAEEINDYYKSTFKLIESNQNKINISNISENFKPNPGKLSLSLGKGEEISISAGALICHHKADLTHMIKEAHNLLDKKAKDEGGRNAIAIQLKKRSGGDRFFICKWDDKERLKAFLSIQNKMGEEMSRSLAYRLAELKDGIDAIKNLKGHQESEQNDLLEKFILKQLDRSGKKSEEKEEIAANISKIIFDHQDNFSNEGLIIAGFLHRDEEVANV
>NC_015672.1|WP_013886730.1|1719633_1720527_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MGFNIARYRDIEEKIYEMEIVTPMFLGGADQNDAELRIPSIKGMLRFWWRALYGTDDLEQTIKNESEIFGNTDYKSPTTISFKNQNISISNEKLDNNNFSIYEYLAYGYRVKNNIKNYIEPKSSFSLKLSTLKMQEIENSINALCSFGGLGSKSRNGFGSLKIIDSKKFNTLDFLNQFRKRDMTTYTTISKQSKILFGKQHKTWKEALAEIGELYKQSKYFLKYQGDKRQLIAKSQGSRYAKPYFLHISKLDNDQYQGQILFMPYEYKDSSKTDEYLDTCEQMNEKIEELAGGNKWQ
>NC_015672.1|WP_013886731.1|1720527_1721787_-|TIGR02221-family-CRISPR-associated-protein
MGRKVFLSFLGTGDYKNCNYYFDNQKIDNIIYIQEAVLRIFCKDWYKSDAGFVLTSSDAKNKHWQNLKNGLQDLPFSVEHVDIPTGSCENEIWDIFQTIIDIIKEDDEILIDITHGFRLMPVILSSAISYLESIKKVKIIGIYYGAFETLGTQSEVEKMPVEERNAPIFDLTPTFTIQKWAKAAEIFEETGSVKQIRNLSLIEVSSILKETKGKNQEAQKIKKVVSELYKFVNEIEACRSKETVTKNFQQLKTEINDLKELGVVKPLEGILEKIHKNVSNFQNDIFENSFAIIKWCISYGLVQQAYTFLSETVITFFTKLDYGFDKIWDRDIREKVSYSINSYFKDGANEENISNIKNSINWLSGTDKDEFYNKMDLLKKYRNDMNHCGYREDSLDYKKLTEKIKELNQYFYKILCKGE
>NC_015672.1|WP_013886732.1|1721779_1722691_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MFIKYQKYDFTIQFSETTYSDVFPAFLLRSVLGKELKSFACVLRRRKCEECPLKFQCAYSYIFESPISKDNEFLKGRDKVSHPFTISCSEDADKKLDSLHFRLTLFGRGIDYFPYIFYAFKKGGESGLFRRKTKYDIVSIFADGKMVNDGESEELGIPEPKDWELSTGTSEIYKKISINMDSPLRLKINGKYTDKITYRDFLYAAVRRAEILSSKYGINNVDTHLTKKLSEKSENICIYWKDYDRYSARQKQKMKLGGCVGHMDLEGYFTSYELSLLNFSEIFGLGKNTGFGFGKISVEDLDG
>NC_015672.1|WP_013886733.1|1722808_1724224_+|cold-shock-protein
MADDVVKTGFFAQNSTLNKCNAAILSGISIYNVMIYIGEDMEQLQELRKKANNLKDNRKYEQATEIYKQIIDNHESHCNDWDYWNYAFCLKKQRMYNAASEICKSLLRINKDFVPAKNLLCWCLFYSKIKNKKSEDEFLEASRKVLKLCSQKDKYSPYTITVFKVLEHFKHKNDYPAEKILKCTNMLDPELLNFEPYRIKENDKEIELASQLELYFMHRTKALLNCGKYDQCINECDHALKSLNKFHYNNDIWFKWRMALSYKALAKYKESIEGLYEIATRKKDWFILKEISENLYHQNKVEEAFMYAVKACLRKGDIDKKLNLFLLIADILISLNDKVNAQKHVDFVYHFKIKEERETGTYLNNLISANNFEISEDLDLDMQYKQLVEFWTQIKASRQKRNTGFIKKLLPNGKSGFIEASDGKTYYFQIRNIKNNPANLHESQKVTFCIEDGFDAKKNKPSKIAVEIKTE

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Crispr_ID: NC_015672_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015672_6

1711131-1712652

TypeIII

Consensus_repeat	Method
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CRISPRCasFinder
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CRT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	PILER-CR

20 spacers

csx20,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas6

The CRISPR arrays of NC_015672_6

>merge|NC_015672|6|1711131-1712652|CRISPRCasFinder,CRT,PILER-CR
TCCGAGCTTGCTGGAAATCAGGTCATGGATTCCAATCTGAAGCGAATCAATTATATAAAAATTCTTTCTCTTCTGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATAGTGATGCGGGGTGGGTACGTCGGTTTGCATATCGAAAGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATACATCAAGAACAGAAAGCGCTGTTTGAAATGGCAGCTCGTCGTAATCCCTTCTAATCAGGTCATGAATTCCAATCAGGTTGCCGGAAGGGGCAACAACCCTTCCGGAGGGTTTGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATACAGAAGCAATTTCATTATATAAAAATTCTCTCTCTAAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATACAAACTTATAAAAGGATATGTGAATCTGGAACACGTTGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATGATGTAAGAGTATATTACGATGAGACAAGACAATTATCGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATAAAACCACAAACGGTATGATCTTAAGGGTCGATGACAGACGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATAGGAACTAAGCATGCAATAAACACTGCTGAAAGATTAGGTGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATAATTATGGATGAAACTAATGTCCATCCTTCCTGATTATGAGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATAAAATGTATCTATTGAATGCGTTCAGCTTGCAGATGGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATACAGAAGCGTATCATTTAAGTAAAAATTCTTTCTCTTAGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATTGAGAGGGATAGAAATACTAAGATTTATAGGCGAGAATGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATATAAAAAAGGAGGAAAAAATGTACCTTTTAAATGCATTCAGGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATCCTTTTAAATGCATTCAGCCTACAGATGATGGATGAGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATAACAAATGTGGAAAGGATTTCGACAAATATAGAAAGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATGTCGCCCAGTTGATGGGTGGCAGGTTACCGGAAGGGGCGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATGGTAAAACTGTCCAAGCTCTAGCCTGGCTTCAATTGCGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATCCGCCCGGGTGCTCGGAGTAGCGCCAAATAGAATCAACGTCGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAATGCCGGAAGGGAGCACAACCCTTCCGGAGGGTTACAAAAGTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT

>NC_015672|6|6|1711131-1712652|CRISPRCasFinder
TCCGAGCTTGCTGGAAATCAGGTCATGGATTCCAAT	CTGAAGCGAATCAATTATATAAAAATTCTTTCTCTTCT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AGTGATGCGGGGTGGGTACGTCGGTTTGCATATCGAAA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ACATCAAGAACAGAAAGCGCTGTTTGAAATGGCAGCTC
GTCGTAATCCCTTCTAATCAGGTCATGAATTCCAAT	CAGGTTGCCGGAAGGGGCAACAACCCTTCCGGAGGGTTT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ACAGAAGCAATTTCATTATATAAAAATTCTCTCTCTAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ACAAACTTATAAAAGGATATGTGAATCTGGAACACGTT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GATGTAAGAGTATATTACGATGAGACAAGACAATTATC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AAAACCACAAACGGTATGATCTTAAGGGTCGATGACAGAC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AGGAACTAAGCATGCAATAAACACTGCTGAAAGATTAGGT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AATTATGGATGAAACTAATGTCCATCCTTCCTGATTATGA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AAAATGTATCTATTGAATGCGTTCAGCTTGCAGATG
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ACAGAAGCGTATCATTTAAGTAAAAATTCTTTCTCTTA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	TGAGAGGGATAGAAATACTAAGATTTATAGGCGAGAAT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ATAAAAAAGGAGGAAAAAATGTACCTTTTAAATGCATTCAG
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CCTTTTAAATGCATTCAGCCTACAGATGATGGATGA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AACAAATGTGGAAAGGATTTCGACAAATATAGAAA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GTCGCCCAGTTGATGGGTGGCAGGTTACCGGAAGGGGC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GGTAAAACTGTCCAAGCTCTAGCCTGGCTTCAATTGC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CCGCCCGGGTGCTCGGAGTAGCGCCAAATAGAATCAACGTC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GCCGGAAGGGAGCACAACCCTTCCGGAGGGTTACAAAA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT

>NC_015672|6|5|1711131-1712652|CRT
TCCGAGCTTGCTGGAAATCAGGTCATGGATTCCAAT	CTGAAGCGAATCAATTATATAAAAATTCTTTCTCTTCT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AGTGATGCGGGGTGGGTACGTCGGTTTGCATATCGAAA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ACATCAAGAACAGAAAGCGCTGTTTGAAATGGCAGCTC
GTCGTAATCCCTTCTAATCAGGTCATGAATTCCAAT	CAGGTTGCCGGAAGGGGCAACAACCCTTCCGGAGGGTTT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ACAGAAGCAATTTCATTATATAAAAATTCTCTCTCTAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ACAAACTTATAAAAGGATATGTGAATCTGGAACACGTT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GATGTAAGAGTATATTACGATGAGACAAGACAATTATC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AAAACCACAAACGGTATGATCTTAAGGGTCGATGACAGAC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AGGAACTAAGCATGCAATAAACACTGCTGAAAGATTAGGT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AATTATGGATGAAACTAATGTCCATCCTTCCTGATTATGA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AAAATGTATCTATTGAATGCGTTCAGCTTGCAGATG
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ACAGAAGCGTATCATTTAAGTAAAAATTCTTTCTCTTA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	TGAGAGGGATAGAAATACTAAGATTTATAGGCGAGAAT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ATAAAAAAGGAGGAAAAAATGTACCTTTTAAATGCATTCAG
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CCTTTTAAATGCATTCAGCCTACAGATGATGGATGA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AACAAATGTGGAAAGGATTTCGACAAATATAGAAA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GTCGCCCAGTTGATGGGTGGCAGGTTACCGGAAGGGGC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GGTAAAACTGTCCAAGCTCTAGCCTGGCTTCAATTGC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CCGCCCGGGTGCTCGGAGTAGCGCCAAATAGAATCAACGTC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GCCGGAAGGGAGCACAACCCTTCCGGAGGGTTACAAAA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT

>NC_015672|6|8|1711205-1712652|PILER-CR
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AGTGATGCGGGGTGGGTACGTCGGTTTGCATATCGAAA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ACATCAAGAACAGAAAGCGCTGTTTGAAATGGCAGCTC
GTCGTAATCCCTTCTAATCAGGTCATGAATTCCAAT	CAGGTTGCCGGAAGGGGCAACAACCCTTCCGGAGGGTTT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ACAGAAGCAATTTCATTATATAAAAATTCTCTCTCTAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ACAAACTTATAAAAGGATATGTGAATCTGGAACACGTT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GATGTAAGAGTATATTACGATGAGACAAGACAATTATC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AAAACCACAAACGGTATGATCTTAAGGGTCGATGACAGAC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AGGAACTAAGCATGCAATAAACACTGCTGAAAGATTAGGT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AATTATGGATGAAACTAATGTCCATCCTTCCTGATTATGA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AAAATGTATCTATTGAATGCGTTCAGCTTGCAGATG
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ACAGAAGCGTATCATTTAAGTAAAAATTCTTTCTCTTA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	TGAGAGGGATAGAAATACTAAGATTTATAGGCGAGAAT
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	ATAAAAAAGGAGGAAAAAATGTACCTTTTAAATGCATTCAG
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CCTTTTAAATGCATTCAGCCTACAGATGATGGATGA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	AACAAATGTGGAAAGGATTTCGACAAATATAGAAA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GTCGCCCAGTTGATGGGTGGCAGGTTACCGGAAGGGGC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GGTAAAACTGTCCAAGCTCTAGCCTGGCTTCAATTGC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	CCGCCCGGGTGCTCGGAGTAGCGCCAAATAGAATCAACGTC
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT	GCCGGAAGGGAGCACAACCCTTCCGGAGGGTTACAAAA
GTCGTAATCCCTTCTAATCAGGTCATGGATTCCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015672.1\|WP_013886719.1\|1703239_1706488_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224000
NC_015672.1\|WP_013886732.1\|1721779_1722691_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_015672.1\|WP_013885895.1\|1707786_1709154_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_015672.1\|WP_013886718.1\|1700229_1703247_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NC_015672.1\|WP_013886729.1\|1716940_1719643_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_015672.1\|WP_013886725.1\|1713351_1714668_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NC_015672.1\|WP_013886726.1\|1714651_1715074_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	cd09749_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_015672.1\|WP_013886721.1\|1706841_1707243_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350229
NC_015672.1\|WP_013886713.1\|1696327_1696960_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886715.1\|1697555_1698053_-\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886728.1\|1716039_1716948_-\|CRISPR-associated-protein,-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_015672.1\|WP_013886730.1\|1719633_1720527_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl\|CDD\|224286
NC_015672.1\|WP_013886722.1\|1707264_1707711_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886731.1\|1720527_1721787_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_015672.1\|WP_013886714.1\|1697020_1697518_-\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886733.1\|1722808_1724224_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|214633
NC_015672.1\|WP_013886727.1\|1715070_1716024_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	COG1336_cmr4gr7_CAS-III-C	gnl\|CDD\|224255
NC_015672.1\|WP_013886717.1\|1698624_1700028_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224586
NC_015672.1\|WP_013886720.1\|1706613_1706841_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NC_015672.1\|WP_013886724.1\|1712960_1713365_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown

Protein	Function_ID	Function_description	E-value
NC_015672.1\|WP_013886732.1\|1721779_1722691_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	9.93132e-07
NC_015672.1\|WP_013885895.1\|1707786_1709154_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	6.68576e-18
NC_015672.1\|WP_013886718.1\|1700229_1703247_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	6.92252e-36
NC_015672.1\|WP_013886729.1\|1716940_1719643_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	8.81656e-86
NC_015672.1\|WP_013886730.1\|1719633_1720527_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	9.15231e-24
NC_015672.1\|WP_013886726.1\|1714651_1715074_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.10932e-38
NC_015672.1\|WP_013886721.1\|1706841_1707243_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350229	cd09881, PIN_VapC4-5_FitB-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4 and VapC5, and Neisseria gonorrhoeae FitB and related proteins. This family includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This family belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	8.25458e-59
NC_015672.1\|WP_013886733.1\|1722808_1724224_+\|cold-shock-protein	gnl\|CDD\|214633	smart00357, CSP, Cold shock protein domain. RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor.	0.00107299
NC_015672.1\|WP_013886728.1\|1716039_1716948_-\|CRISPR-associated-protein,-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.86242e-31
NC_015672.1\|WP_013886731.1\|1720527_1721787_-\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	3.96165e-65
NC_015672.1\|WP_013886725.1\|1713351_1714668_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	7.34129e-47
NC_015672.1\|WP_013886727.1\|1715070_1716024_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.32876e-59
NC_015672.1\|WP_013886717.1\|1698624_1700028_+\|ATP-binding-protein	gnl\|CDD\|224586	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.06798e-38
NC_015672.1\|WP_013886720.1\|1706613_1706841_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	2.12567e-12
NC_015672.1\|WP_013886719.1\|1703239_1706488_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|224000	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].	4.77727e-108

>NC_015672.1|WP_013885895.1|1707786_1709154_-|IS5-family-transposase
MRPKKQDSTTQELLEPLLVNIIDMKHPLIQLADKIDWEYFEKEFGSLYHRNDGRPGIPMRMMVGFHYLKYTYNLSDEDVVHGWKENPYWQYFTGEKVFQTKVPINPTSMTRFRNRLKEEDLLKFLEETINTAFRSGYLNKNDVKKVAADTTVQEKNITFPTDIKLFYTMIKYLVKFSKKHEIRLKETHEYSGKKLLMKYSGYVHAKQYKRAGKAVKKMKTKMGKLYRSIERVLPEELRNSDEFQQLKLFYESLWNRSKKSKNKLYSLHSPEVECISKGKSHKRYEFGNKVGFVGTLKKNFILSCKSFHGNPYDGHTLEENLCEAKTLLGSNGTIDTILVDLGYRKHNYRGDAKVHVVPRSMKKFKVNFKRLLKRRSCVEATIGHTKRDNRMDRNYLKGKEGDKANAILAASGHNLRLILAFLLFFLKKFMDNIAKKLANFANEVFLDKKYAKIYV
>NC_015672.1|WP_013886722.1|1707264_1707711_+|hypothetical-protein
MSDICFLRPTAAKRIENWLNSNNYSLHNGYFTLEYNFSPIVDDGIILSFIDNKTGDIHKLVVQDDIEGIIEPDEECSVSQISIDYIPLSLELTPETLEKFSEIESRKFEAEVEELVEPVGCGIKFEIYSDSYAIFACKKELQRTQIGE
>NC_015672.1|WP_013886721.1|1706841_1707243_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MSYLFDTNICIYIIKNKYKQIAKKMQEAGLEKICISAITVAELEYGISKSSKKDENRIALLEFLIPFTVLNFDQNDARKYGQIRYNLQKAGTPIGNMDLLIGSQALARDMTLITNNEKEFSRIQGLKIENWIK
>NC_015672.1|WP_013886720.1|1706613_1706841_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MDTAKIFENGKSQAVRLPKKYRFDSDDVFIKKIDDIVVLIPKDKVWQIFSSSLDKFSEDVDFQKDNSIPQEREEI
>NC_015672.1|WP_013886719.1|1703239_1706488_+|UvrD-helicase-domain-containing-protein
MSDQALKDSHARKKIINDLDTNFLVEAGAGSGKTSSLVKRITSLITNGKNKISEIAAITFTKKAASELMERLLNELEDRHNSETDPTIKENLYDAINNFDQCFTGTIHSFCSGILRERPVEAGVDPDFDEIDDSDEFGLITEVWNEFIKSTRAENPDMLKLTEKIGVSPEELQDSFVMLNKYPEIKIHAEKSEKPDLKPAVKKVLEICKEASKYIPDEEPDKGYDAFQKNVQSTLRLLEYRNLYEDKYAIEILTKFEKTPKITQNRWLDKKTAKNFQDVILPDLVENTVYPVLRKHREHIYTYFIDFFQDALTYYENKRNQESILNYNDLLTLTSKMLRNNSKVREYFQNKYKTTLVDEFQDTDPIQAEIIMYLTGEDLKETDWSKLRPKKGSLFVVGDPKQSIYRFRRADIDIYNFVKEIISQTGGEILELTSNFRSLNSIADYLNPVFEERFPESGDRYQAPMAKIRAIRENNYEHGVKKILVQCDSRKKEDVVEIDAENIARYIKYAVDGGIKLARNEEEKSKGLNEKPVYSDFLIITKHKDLLEQYANTLEKYGIPSTVTGDDFFSQSEEINHIYKLLKFLSKPDDEILLVSVLRGMFFGLSDNDLYQFKASNGYLNIFSSIPESLDENIKNLFNNCFSTLRKYKKIINELPPSSALETIFQDLGILPYTSLKNLSKSRAANIYFLIEQVKQKETTEFYSFGNVVNHIGRLLESKFEQRNSLEVESNCVRIMNLHKAKGLEAPVVFLAHPHKNTKHDPTQHINRREGEPIGYFALTKKKGIHHKKIFAQPKNWEEFQEEEQKFLDAEFERLVYVAATRAKNLLIISCKEKGNGSQNPWLSLLGNLKDDDVIDVPDVSIEHDSGVNELSVKDINDKKAEISHWRHSVSEENYSNMTPTEVKDLEKIFAGERLEGGGQDWGTAVHNFLEFAVMTKDTGYEDLDTYIKFTFEELDISSDRTEEAKKIIEDFKQTDLFNRIKNAEQVETEAPISMKINPESEIMNLFNTKTSNKPIILAGVIDLVFKEKDGWVIIDYKTDRVNSEEEYEKLRQAYLNQVEIYAKAWEEITGEKVKEKNIYFV
>NC_015672.1|WP_013886718.1|1700229_1703247_+|PD-(D/E)XK-nuclease-family-protein
MKSVLKSLENICSKNITKRKILVMPSYTEGLSLLNALALNNVNIANIKVETPLSLAKDISKMSLYKSGKDFLDRSSARYVVLNLFNQLLTENKLKYFQQLSPSVGVISELENVLYELRITDYTHINFPVNSFIDPEKEHDIKTLLQKYENYLENNNRIDEPGLYKHSIQMLQKDSFHKDKLFLIPANLELPLLSKSFISMLTKNNHEIIKFAQLKSLNVPENYYSNNPYSDTIDNCFSWLYELNNSENLDKNPGFEIYRAYGESNEAKKVIRVLKRDAINLDDAVIYTTSSQLYNQILYDLSCTYNIPMTFEEGISVSNTSPGKLLLSVLEWISEKYSVPKFCTMSTGGFFKFSNNEISPLKISKILKESKIAWGKKRYKKILENELTNTTNDYKIEILNVVLSELNSIFDEIPDTENTSSISLSEFSKGLVNILNKHTRIRNETDASALTTLTENLSNLADYSTQEFQEKEIIKMLKKLVYGININASSAKPGHIHVTNFQNGIWHNRKHNFILGLDAEKFPGKGGESPFLLDMEKERIGKIQTSIQRKSRNIYKMTELLANTNGKIYAMFTNYDTEAARLQSPSSLLLQIYRLQEKLDKSTPDKEHIESYLPFKNSEKEILDETELWLHKAFYSGGIKNNEEIFPSVYPVFNKGLFALSERQSSINEYNGCELNISDEIVNKLLYEKTFSNSKLETMGSCPLRFFFQHILYLKPLEEYEYDPWRWLDPLERGTLLHRIFELFYKELINKKEMPELDKHMGLLENIAKTETEELKDLLQPPSETVYESEFNEILDSCRIFLQKESTKLSKEGHPLYLELYFGNYPESEGSSFPTAVFTLPSGRKIQLSGRIDRIDQLNNGSYKIIDYKTGSTRDYSSNEYFKKGKQLQHALYSLAFEKLMGNKYKISQSGYYFPTTKGEGSEYMYPPSDGKHKREEVLEIVDILLDNIENRFFPPVKYDNKNDSCRFCDYKEICDREKNDSLTKMLEYEENKYLQNYRRIESYE
>NC_015672.1|WP_013886717.1|1698624_1700028_+|ATP-binding-protein
MNTPDFLNREKELNFLHSQFARKEASFIVIYGRRRVGKTSLIKEFIKDKSSLFFMADKQSEKGILDRFAKTASTFLEDEFLEKLTFNSWEDFFGYITQKLDESKKYVLVIDEFQYLPDINHAFPSILQRIWDEKLKDKNIMLILCGSLINMMYSTTLSYQSPLYGRRTGQIKLDPISFDYCHNFFPNIDERKLIEYYSVTGGIPKYMEMFDATNDILYDIKTNVLSKNSYLYNEPRFILNEEVTETATYFSILKAIAAGEHKIGKIASIVGVKTNVLAKYFNVLADLQIIERQVPVTEENPEKSKKGLYFIKDNFFRFWFRYIFPYQSFLEIERDDVVLKEIQKSFNIFVSFVYENLCLQKIPDLTQNGVINFKIEKWGRWWSKDEEIDIVATSKKDKNILFGECKWSDTPIGVSVYADLKAKAKNVKWHTDERNEYYILFSKSGFTEDLMDINEKTSSLILIDSIV
>NC_015672.1|WP_013886715.1|1697555_1698053_-|hypothetical-protein
MSKQKRVKDQFNWTPPHEQKGRFVFPLSDKVEERKPLLWLVRTNSEKNMVDDVFLVNLTGEVLDMVAAGNTGFQSIDDEEQVNLISGSRFVYENVETNEAVKVEEYDGILDYDSMLGITLYIKSKKLGNIQIGTDVKKGGVENMVLLWDTGETGKKAGVSEWDDD
>NC_015672.1|WP_013886714.1|1697020_1697518_-|hypothetical-protein
MKKSVEIVKFKQMYDFIIFLLSKTCNEISQEKLNNELRNSFITGICECISDKNDEFYGKCCGTFYLNTMSEKEGIFSADDYFLFFSNIGIFIFHTDNKGHLKECEFFYESEYFPEFYLEILKEFKTDSGFKNYMKYLKVNDVKLRTLAELKEVFSIEKTNVIEVE
>NC_015672.1|WP_013886713.1|1696327_1696960_+|hypothetical-protein
MKSVSYAINNILDACNKEDGLWIGNTRKGIEVSEKKEIENLFDLIISGNTILDNILILEIEEPCFSRKFIANYWSDLNLKKFFQKRNSQKTLLLCNGQSLQDIYIGLKGSYDKQELYFNVISSSSQNSKTTNKFKFLPYPYIEKTGVWIKAKDLINSEVNPDKIIKKIGNKIPENVISKKYDLIKANIQSFINEFSIKKNAHIKIINVNN
>NC_015672.1|WP_013886724.1|1712960_1713365_-|hypothetical-protein
MNYYKTNKNLLLIFSHSLTNVQIEDAHSMNITSFVYLPDDLQNIWSNIRPEGDLPVSDLDRIVDWIDANSSKGDFALVQGDFGATYYIVNRCFDMGLIPVYSTTKRIASEESISASEVGKQSVFEHVNFRRYVK
>NC_015672.1|WP_013886725.1|1713351_1714668_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MIPVHKEIKDLVTKDKFNQGNFGLWFYKFVFLDGNTLKSGVNDVNDYKDQYENLREYNRFLKELIETKHLNQYAFCKSKEKTHKILTFRATLSSPMVTGIGNAHPCEVGMTFDHSLGIPYIPASSIKGIVRFAHTLSLVDEAYGKNIVDEEGWFDDEADWTKIPTIFGTSQDNGRRGKVIFLDAYPEKTPYLHVDIMSPHYGPYYSEFKPPADYYDPTPIKFLTVAKGTTFIFRVLIDKETKDIEQIMHDVSSAVKNSLEKDGVGAKTAVGYGRFTIESNEEPQDLIDAYEEKFLTEEEKLKREIKSFIDKIQVTNDNSSIDSLFQQWENNDKINDNKEIAETFKKKVKKTKANGEFTAHYKKVAEILDINLEESFGKDISEETERQTDNDIENDLKKALRKIKKANGDKKKIKRILKDHKKIKDKILEECPDLNELL
>NC_015672.1|WP_013886726.1|1714651_1715074_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MRTLGQKRAEYALEKVLTISCDKKDFKSLSSGVPSMILQNGFGQTMAFLVAKGTDKDMKIKENDKHIVMFRIIKEWLIKELSTVGFNKNNNEKEFIKEISQLSQMDYLTAQKETLALLEWVKRYANAWFSGEESKNDTGS
>NC_015672.1|WP_013886727.1|1715070_1716024_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MNKEICSILSFYAVSPIHAGSGASVATVDLPIQRERHTGYPIIQASGVKGAMRDHFRNNVKNKSDREYLTNWIFGIDKDNDGEVVFKDGNYVSEKLEENKNYKKLEDKENKITSFPGSISVSDAKLLAFPMRSNLAPFVWVTSPTILKKLTKDLEYLNISETFGDLNIEEDNAKIIKGNFNDNSRIILEDVTVNVNANEKLESEFLNDKFPQVERLLLISDEMFDYCVTSCTEVQTNIKINSEKGTAAEGGLRYQEFLPSDSVLYSVVYFSGKSNELQADAIKKYLQESIDSFFQIGGDITLGKGICNVSWIDGGTK
>NC_015672.1|WP_013886728.1|1716039_1716948_-|CRISPR-associated-protein,-Cmr3
MYNWYSFEPNDTVFFRGAEPMEKGEDHNANFNFPPPVHTMAGAIRTYFYNIDKKNNEDKFSDIVRIGEEYGGFKLVGPFFKIDEKIYLPAPYSWFVEKSCATSENGKYNIIKGFSIQSDLIKTSSDDLYWAKGESELESIGGKWINYNDLINGSDKAEVKDVKDFYVSELRTGIALNKDHTARESHIYSFNHCRLKKGVSFIFGIDIDDLGNGGILTLGAEQRFGKFKKEDLEINLNTNGELFMSLSLMPASAKVNDSVISTGKIQYLGGWDLHKRFHKPMKGYFPAGTVFNSNFDNCISIN
>NC_015672.1|WP_013886729.1|1716940_1719643_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MAINLPANYWDNKFWAYMHDPFDKCFDIKGHVERAKEIVSIFGIDSPNQDFWKKADGIASGFERGQIVGYSSDEEKSGAVDFLKNPVITHPTGEKSHLKFDLSDASAKQIWEKLKNYLEKEIGKEAGTGGYSDQFEGKPNDFKKARFLYTHLVLRFRLAQDNVGDIGALWHRLPADTRFPDHSIWQHNALVSAIQSCFELGGKDDLGMMVFNISPVQAFISKARKLRDYWTGSVFLSYLAFEGIRWVVENLGPDHILYPSLIDQFLVNEYLRKEWKVKYGVNFLNKESDIASFPNKFLFLLPFSKSEEIAEEVEKSIKQAWKEIYSSVKEGIFQELHMNSDERSYIDSIFNRQNDNFWEFKWASVKMLKEENKDEIKSLLPSKVYNANFDVLKCFNDMIKDKKYYEKSGIGTLYSVSHSLCQSALAAEKNRKTIEREPEPGEKCHICGEFEVVHSNPYEKGMSANEYKTNIDNFWKNLKESWEGEDGSDLKDNEKLCSICLTKRLSYYYIKKYKEHLLFKTFKDSSNFPSTTYMALHDYYIREGIEDENEKIEKAQGIHDSHVSDKEMRYSDKYYALLLMDGDRMGKLVNGETIASTWESIMHPEIFDKLQNGKIESPYSENWQKIFQESPKRNLTPAIHSAISESLGDFAIYGVANIVNNYDGKLIYAGGDDVCAVLPVSNVLKAAEEINDYYKSTFKLIESNQNKINISNISENFKPNPGKLSLSLGKGEEISISAGALICHHKADLTHMIKEAHNLLDKKAKDEGGRNAIAIQLKKRSGGDRFFICKWDDKERLKAFLSIQNKMGEEMSRSLAYRLAELKDGIDAIKNLKGHQESEQNDLLEKFILKQLDRSGKKSEEKEEIAANISKIIFDHQDNFSNEGLIIAGFLHRDEEVANV
>NC_015672.1|WP_013886730.1|1719633_1720527_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MGFNIARYRDIEEKIYEMEIVTPMFLGGADQNDAELRIPSIKGMLRFWWRALYGTDDLEQTIKNESEIFGNTDYKSPTTISFKNQNISISNEKLDNNNFSIYEYLAYGYRVKNNIKNYIEPKSSFSLKLSTLKMQEIENSINALCSFGGLGSKSRNGFGSLKIIDSKKFNTLDFLNQFRKRDMTTYTTISKQSKILFGKQHKTWKEALAEIGELYKQSKYFLKYQGDKRQLIAKSQGSRYAKPYFLHISKLDNDQYQGQILFMPYEYKDSSKTDEYLDTCEQMNEKIEELAGGNKWQ
>NC_015672.1|WP_013886731.1|1720527_1721787_-|TIGR02221-family-CRISPR-associated-protein
MGRKVFLSFLGTGDYKNCNYYFDNQKIDNIIYIQEAVLRIFCKDWYKSDAGFVLTSSDAKNKHWQNLKNGLQDLPFSVEHVDIPTGSCENEIWDIFQTIIDIIKEDDEILIDITHGFRLMPVILSSAISYLESIKKVKIIGIYYGAFETLGTQSEVEKMPVEERNAPIFDLTPTFTIQKWAKAAEIFEETGSVKQIRNLSLIEVSSILKETKGKNQEAQKIKKVVSELYKFVNEIEACRSKETVTKNFQQLKTEINDLKELGVVKPLEGILEKIHKNVSNFQNDIFENSFAIIKWCISYGLVQQAYTFLSETVITFFTKLDYGFDKIWDRDIREKVSYSINSYFKDGANEENISNIKNSINWLSGTDKDEFYNKMDLLKKYRNDMNHCGYREDSLDYKKLTEKIKELNQYFYKILCKGE
>NC_015672.1|WP_013886732.1|1721779_1722691_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MFIKYQKYDFTIQFSETTYSDVFPAFLLRSVLGKELKSFACVLRRRKCEECPLKFQCAYSYIFESPISKDNEFLKGRDKVSHPFTISCSEDADKKLDSLHFRLTLFGRGIDYFPYIFYAFKKGGESGLFRRKTKYDIVSIFADGKMVNDGESEELGIPEPKDWELSTGTSEIYKKISINMDSPLRLKINGKYTDKITYRDFLYAAVRRAEILSSKYGINNVDTHLTKKLSEKSENICIYWKDYDRYSARQKQKMKLGGCVGHMDLEGYFTSYELSLLNFSEIFGLGKNTGFGFGKISVEDLDG
>NC_015672.1|WP_013886733.1|1722808_1724224_+|cold-shock-protein
MADDVVKTGFFAQNSTLNKCNAAILSGISIYNVMIYIGEDMEQLQELRKKANNLKDNRKYEQATEIYKQIIDNHESHCNDWDYWNYAFCLKKQRMYNAASEICKSLLRINKDFVPAKNLLCWCLFYSKIKNKKSEDEFLEASRKVLKLCSQKDKYSPYTITVFKVLEHFKHKNDYPAEKILKCTNMLDPELLNFEPYRIKENDKEIELASQLELYFMHRTKALLNCGKYDQCINECDHALKSLNKFHYNNDIWFKWRMALSYKALAKYKESIEGLYEIATRKKDWFILKEISENLYHQNKVEEAFMYAVKACLRKGDIDKKLNLFLLIADILISLNDKVNAQKHVDFVYHFKIKEERETGTYLNNLISANNFEISEDLDLDMQYKQLVEFWTQIKASRQKRNTGFIKKLLPNGKSGFIEASDGKTYYFQIRNIKNNPANLHESQKVTFCIEDGFDAKKNKPSKIAVEIKTE

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Crispr_ID: NC_015672_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015672_7

1734298-1735756

TypeIII

Consensus_repeat	Method
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CRISPRCasFinder
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CRT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	PILER-CR

19 spacers

PrimPol,cas1,cas2

The CRISPR arrays of NC_015672_7

>merge|NC_015672|7|1734298-1735756|CRISPRCasFinder,CRT,PILER-CR
TCCGAGCTTGCTGGAAGTCAGGTCATGAATTCCAATTGGGAAATATATAGATACCTGTCCTTCCGGGTTTGAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATTTAAAAAGAATCCCAAAGAAAATAGAGGAACTCCTCAAGGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATAAAAAAAAATGAATAACATGGAACAAATAAAAGAACTAGAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATTATACCCCTGACGATGTAAAAGTCAGAGGTATAGATAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATCGGGAGAGAATTCCGGACTGAAGCATATCATTTACAAAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATTAATCAAGAAATAAAAAAGGAGGAAAAAAATGTTTTTAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATTATTGGAGGAGATAAAAGCGAAGAAGGAAAAAGAAGAAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATCTCGGGGTTGAACATAACCGAATAAATGTCTCCCTGAAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATATACATGGGCAAAAAATAGACAGTTTTCCGGTATCAAAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATGCAGAATTGCAACCTCACGCTCCAGTGAGGTTGTATGTAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATGATGCTGGGTGAGTTCCCGGCATCTGTCAAGATTGACGAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATGGTATAGATGAGGATAACATTCTTCATGTATATAACATGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATACGATAAGCTCAACAAAAAAGAGCTTTTAAAAATAATAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATATTTGAACATGCTGAAATGTTATCAAGAAATATCGGATATGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATCGGTTATGTGTTGTGCTGGCATTTCAACCAGCACGACCTGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATTAGGGGAGAAGCCCGCAATTCGAGATGGTTAAAGCTCCATGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATCCTGAAATGGGAGAGTGACACCAAGAAAAGAAAAATAGGGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAATCCGTCGAACACGTAGTGAAACGTGTACCAGAATCAAATGACGGCAATCCCTTCAAGTCAGGTCATGAATTCCAATATCTTCGTCCTCGTGGGATATCCCCGAGGACTTGAAAAAAGTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT

>NC_015672|7|7|1734298-1735756|CRISPRCasFinder
TCCGAGCTTGCTGGAAGTCAGGTCATGAATTCCAAT	TGGGAAATATATAGATACCTGTCCTTCCGGGTTTGA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TTAAAAAGAATCCCAAAGAAAATAGAGGAACTCCTCAAG
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	AAAAAAAAATGAATAACATGGAACAAATAAAAGAACTAGA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TATACCCCTGACGATGTAAAAGTCAGAGGTATAGATAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CGGGAGAGAATTCCGGACTGAAGCATATCATTTACAAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TAATCAAGAAATAAAAAAGGAGGAAAAAAATGTTTTTA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TATTGGAGGAGATAAAAGCGAAGAAGGAAAAAGAAGAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CTCGGGGTTGAACATAACCGAATAAATGTCTCCCTGAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ATACATGGGCAAAAAATAGACAGTTTTCCGGTATCAAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	GCAGAATTGCAACCTCACGCTCCAGTGAGGTTGTATGTA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	GATGCTGGGTGAGTTCCCGGCATCTGTCAAGATTGACGA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	GGTATAGATGAGGATAACATTCTTCATGTATATAACAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ACGATAAGCTCAACAAAAAAGAGCTTTTAAAAATAATAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ATTTGAACATGCTGAAATGTTATCAAGAAATATCGGATAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CGGTTATGTGTTGTGCTGGCATTTCAACCAGCACGACCT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TAGGGGAGAAGCCCGCAATTCGAGATGGTTAAAGCTCCAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CCTGAAATGGGAGAGTGACACCAAGAAAAGAAAAATAGG
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CCGTCGAACACGTAGTGAAACGTGTACCAGAATCAAATG
ACGGCAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ATCTTCGTCCTCGTGGGATATCCCCGAGGACTTGAAAAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT

>NC_015672|7|6|1734298-1735756|CRT
TCCGAGCTTGCTGGAAGTCAGGTCATGAATTCCAAT	TGGGAAATATATAGATACCTGTCCTTCCGGGTTTGA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TTAAAAAGAATCCCAAAGAAAATAGAGGAACTCCTCAAG
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	AAAAAAAAATGAATAACATGGAACAAATAAAAGAACTAGA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TATACCCCTGACGATGTAAAAGTCAGAGGTATAGATAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CGGGAGAGAATTCCGGACTGAAGCATATCATTTACAAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TAATCAAGAAATAAAAAAGGAGGAAAAAAATGTTTTTA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TATTGGAGGAGATAAAAGCGAAGAAGGAAAAAGAAGAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CTCGGGGTTGAACATAACCGAATAAATGTCTCCCTGAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ATACATGGGCAAAAAATAGACAGTTTTCCGGTATCAAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	GCAGAATTGCAACCTCACGCTCCAGTGAGGTTGTATGTA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	GATGCTGGGTGAGTTCCCGGCATCTGTCAAGATTGACGA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	GGTATAGATGAGGATAACATTCTTCATGTATATAACAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ACGATAAGCTCAACAAAAAAGAGCTTTTAAAAATAATAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ATTTGAACATGCTGAAATGTTATCAAGAAATATCGGATAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CGGTTATGTGTTGTGCTGGCATTTCAACCAGCACGACCT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TAGGGGAGAAGCCCGCAATTCGAGATGGTTAAAGCTCCAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CCTGAAATGGGAGAGTGACACCAAGAAAAGAAAAATAGG
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CCGTCGAACACGTAGTGAAACGTGTACCAGAATCAAATG
ACGGCAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ATCTTCGTCCTCGTGGGATATCCCCGAGGACTTGAAAAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT

>NC_015672|7|9|1734370-1735756|PILER-CR
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TTAAAAAGAATCCCAAAGAAAATAGAGGAACTCCTCAAG
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	AAAAAAAAATGAATAACATGGAACAAATAAAAGAACTAGA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TATACCCCTGACGATGTAAAAGTCAGAGGTATAGATAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CGGGAGAGAATTCCGGACTGAAGCATATCATTTACAAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TAATCAAGAAATAAAAAAGGAGGAAAAAAATGTTTTTA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TATTGGAGGAGATAAAAGCGAAGAAGGAAAAAGAAGAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CTCGGGGTTGAACATAACCGAATAAATGTCTCCCTGAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ATACATGGGCAAAAAATAGACAGTTTTCCGGTATCAAAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	GCAGAATTGCAACCTCACGCTCCAGTGAGGTTGTATGTA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	GATGCTGGGTGAGTTCCCGGCATCTGTCAAGATTGACGA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	GGTATAGATGAGGATAACATTCTTCATGTATATAACAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ACGATAAGCTCAACAAAAAAGAGCTTTTAAAAATAATAA
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	ATTTGAACATGCTGAAATGTTATCAAGAAATATCGGATAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CGGTTATGTGTTGTGCTGGCATTTCAACCAGCACGACCT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	TAGGGGAGAAGCCCGCAATTCGAGATGGTTAAAGCTCCAT
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CCTGAAATGGGAGAGTGACACCAAGAAAAGAAAAATAGG
GTCGTAATCCCTTCAAGTCAGGTCATGAATTCCAAT	CCGTCGAACACGTAGTGAAACGTGTACCAGAATCAAATGACGGC
AATCCCTTCAAGTCAGGTCATGAATTCCAATATCTT	CGTCCTCGTGGGATATCCCCGAGGACTTGAAAAAAGTCGT
AATCCCTTCAAGTCAGGTCATGAATTCCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015672.1\|WP_013886738.1\|1730893_1731559_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_015672.1\|WP_013886751.1\|1746599_1747556_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|273137
NC_015672.1\|WP_013886735.1\|1724502_1725513_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_015672.1\|WP_013885349.1\|1727894_1729214_-\|IS1380-like-element-ISFsi1-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_015672.1\|WP_013886740.1\|1732446_1733964_+\|SAVED-domain-containing-protein	unknown	unknown	gnl\|CDD\|380122
NC_015672.1\|WP_013886737.1\|1727384_1727696_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013885355.1\|1729517_1730567_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_015672.1\|WP_013886752.1\|1747530_1748337_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
NC_015672.1\|WP_013886749.1\|1744829_1745030_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378010
NC_015672.1\|WP_013886750.1\|1745166_1746318_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NC_015672.1\|WP_013886748.1\|1744576_1744837_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_015672.1\|WP_013886736.1\|1725509_1727267_-\|DNA-primase	PrimPol	COG4951_PrimPol_CAS-I:CAS-III	gnl\|CDD\|227287
NC_015672.1\|WP_013886734.1\|1724224_1724506_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015672.1\|WP_013886742.1\|1738279_1738426_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_041262577.1\|1740127_1740520_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NC_015672.1\|WP_083816882.1\|1736969_1737500_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|238032
NC_015672.1\|WP_169310290.1\|1730748_1730904_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886741.1\|1736262_1736760_-\|DUF1998-domain-containing-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886739.1\|1731548_1732463_+\|hypothetical-protein	unknown	unknown	unknown
NC_015672.1\|WP_013886743.1\|1738504_1739554_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189

Protein	Function_ID	Function_description	E-value
NC_015672.1\|WP_013886738.1\|1730893_1731559_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	0.000532716
NC_015672.1\|WP_013886751.1\|1746599_1747556_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|273137	TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	3.66866e-141
NC_015672.1\|WP_013886735.1\|1724502_1725513_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.42154e-120
NC_015672.1\|WP_013885349.1\|1727894_1729214_-\|IS1380-like-element-ISFsi1-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.78054e-25
NC_015672.1\|WP_013886740.1\|1732446_1733964_+\|SAVED-domain-containing-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	6.03723e-14
NC_015672.1\|WP_013886752.1\|1747530_1748337_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.00762e-97
NC_015672.1\|WP_013885355.1\|1729517_1730567_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.66424e-22
NC_015672.1\|WP_013886748.1\|1744576_1744837_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	3.71646e-14
NC_015672.1\|WP_013886736.1\|1725509_1727267_-\|DNA-primase	gnl\|CDD\|227287	COG4951, COG4951, Uncharacterized protein conserved in bacteria [Function unknown].	3.13192e-21
NC_015672.1\|WP_013886734.1\|1724224_1724506_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.07187e-28
NC_015672.1\|WP_013886749.1\|1744829_1745030_-\|hypothetical-protein	gnl\|CDD\|378010	pfam08494, DEAD_assoc, DEAD/H associated. This domain is found in ATP-dependent helicases as well as a number of hypothetical proteins together with the helicase conserved C-terminal domain (pfam00270) and the pfam00271 domain.	0.00832316
NC_015672.1\|WP_041262577.1\|1740127_1740520_+\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	6.6622e-47
NC_015672.1\|WP_083816882.1\|1736969_1737500_+\|HD-domain-containing-protein	gnl\|CDD\|238032	cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif.	7.4844e-05
NC_015672.1\|WP_013886750.1\|1745166_1746318_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.58639e-39
NC_015672.1\|WP_013886743.1\|1738504_1739554_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.95168e-20

>NC_015672.1|WP_013886740.1|1732446_1733964_+|SAVED-domain-containing-protein
MKTIFDNIQEGRNHKIIEQCIKDGSINQDSLPYCYSLFSKTEFAEYRSLKSNFLQSVFIYDHLFNVEYLCEHLQITENDCYALKNAKIKRAYFPVTSHNNGNESEIQELIFFDVELESSTLTFPNENNHVKDALISVSKALKRNFFIMFDNYFAGRSFSLAAAAAGLLKEDKLKYFAFSGEVKENANIAKVENLPAKRKISEEKDLFFVSPDSVDNLNQLTKLNAETVDIPFIQLFGKQKTELEKNLEKISGNEIVNDYKIWVGILGGDKSLVFTHTEEMLENTTEVWDELLLDFYEKINKLYQLPYYVNIHFLGSLSAFAFLSGIVFGAKNKITIHHYQDGSIFRVMDFSEKSVRLLKSKTKKYEKVKYSVEYTVAESEDAAIVIYLASHNPKNDAQKYIESHLKCSLLFICLENNQGNIDLNEDDWIKTVAEIYSLVDEAGELIGKSIRKYHFFMSIPVPVAFGFGMAYGDYKKIAVYNYVKSQSTYKKVADSDLSRNLKMAF
>NC_015672.1|WP_013886739.1|1731548_1732463_+|hypothetical-protein
MKSNSNLEELFKIYKKLKSTRFEQGEMVEKMQGDYSKFMSLFKRSSITTPKTPTTHNTSTYELGELYIVDDMIFLLAGEHGDFYFGYKVTEWVEFATHEDFVFKFSGNSWMAILSTELYIPKEKLGSFIGALDEEYADALYEYMVNDYLEEKFTGRKIPTDDYNYLENQFRILELKKVADYCFGQFIAMEEDIRKNENEIINLNDLKERLSFMLKNTDLPNAAFDARQSAIGENFILIFDPNDKILTITISEKLLLKRFAKMEFFGNTFYFYIEKPQIEIEVPFDFINVDYLAENIRVVDENDI
>NC_015672.1|WP_013886738.1|1730893_1731559_+|sigma-70-family-RNA-polymerase-sigma-factor
MRNDKEIIKFLKRPESSEEGYHSLLQLFSYSFYKFDVIKNNYECDAVFHDFLLKNIFHNKTFFLFLHSSDEKDIMPYLKKMIRNFLINLRNKTIRKGTDLSLDETLNDDSNDTFADMLKNERVSHELIFEAKSILSIFLNTLTEKNKRILCQYLYSKKYQFISGISRDAFDKAVERTKKKVQEIVEQNKLSFDSIKVFFDYIYVSEVCEKMRLNNGDSDEK
>NC_015672.1|WP_169310290.1|1730748_1730904_+|hypothetical-protein
MLDEILREEGVYKEAAESCRDSTGKIPQVIKYCGLCNKDYVNSIKRKIYEK
>NC_015672.1|WP_013885355.1|1729517_1730567_-|IS5-family-transposase
MEKYIEPTVLDSMLDFKANDSTYLDKINSLIDWKKVKSILDKKYRWTKNTSGSRAYSPLLLFKILLVQSWEKLSDPQAEFALKDRLSVIRFVGVSVSGEVPDHSTISRFRSRLLELEIFDELFSEINRQLSELNLIVKSRKEAIIDATLVESSCRPRKVVNDIAEDRHEGDDDNDSSCGGSGGNNESNISYSKDTDASWLKKGNRAYYGYKQFFCVNSDGYILGEMVKSARESEVRNLAPLLQKLNLPKGTAIYADKGYSSESNRKDISGTYADMIMYKAARNKPLTGFQKFHNKAVSKVRYVVEQAIGLIKLHFGYTRSRFIGIDKVRLELSIHCMAYNLRKGALRMI
>NC_015672.1|WP_013885349.1|1727894_1729214_-|IS1380-like-element-ISFsi1-family-transposase
MSKLNYKLERSNDKITPFGGISLLIPLLDKMGIRDFLDKELDHPGSNRGKPPSSKIIPVILSMICGGRSFSDIDKLSFDKVLSYISGIEDIPDSSSISRYFSKTESMLDEVAVNKTISKLGSLNYKIVKDALKRENLFSVTLDQDATYAKVYKRDAKYCYKKFKAYSSMTCFIGESGYCIDEEFREGNVSAQVGILEQLQRVHKYLESCGIEVSNVRNDSAGYQSKVLNYCFDNDLTFFIGGDLDSSVRKGINHIPSDSWKRYRNRYGDESDNEEIAEFIHCMENTKESFRIIVVRKKIESDNPTVPELLGDKYEYRVIATNSKLDAEKVVHFYNLRGVCEYNIKEAKYGFNLKSFPSGNLAGNGLWFKTGILAYNLIMYLKRIIMGGVYKNKEMGSIRYQVISIAGKLVSHGGNKLKLCCSVDMFKKMEQWRTECLTL
>NC_015672.1|WP_013886737.1|1727384_1727696_+|hypothetical-protein
MFNLGDLESFRELKKHYRLNDAEIYVVNVCLAYHCFDQLLTGDIEYLSKNKAKKRPIVIYQSEGNKAYFFPLSTNQNTFRDKDILFDYSKCSIQSTCNDSINL
>NC_015672.1|WP_013886736.1|1725509_1727267_-|DNA-primase
MPQSNDLGYQKSYEEYLKTAEEAENQGDIQAMLKNLNLALQHTDNKKPIFEKLLEYHLNDTNPTRALKILKSLIEIEPKNAGYYKQAVNILLEIDNAESAEKLARYAFKQTNNSYFKNIFEDKNQNYLMQKQFSNTTLTMLFSLFNGREGVYARQWKSPEGKTGYIPVYEPLSEKVIRNHLNGNITIGIYQHRLDSTINWICIDVDIAKFALKQALSDDEKWKELDIATQNTAKSIADECSKFNIPVYIEHSGYKGRHCWIFLVKPLPARLAKRFGEHIKLNIPSKIPEVAIEVFPKQNFVKTNGVGNLVKMPLGIHLANGRRSCFLDSKGREITDVDNYLKNIQKASESEILDYLNYYRLSSIYENTGTKQMAPSEKMEIPVHTTQYNIDSDKEFQYLIYKCPVIKEIFNNAICKNELSYDEMIVLTHTVGHLENGVEAVNSIFAKCFNIQQEKFLKSKLKGNPVSCAKIRSRVPNITSKMDCNCQFVYAEGLYPTPVLHLQEQDIPSKIPRGLDINSVNFQNALEDYIKLKKQTYETKLIMKEYEEKFEKLFKNSGVDTFSTAIGKFRRVVDENGKVTYKLDV
>NC_015672.1|WP_013886735.1|1724502_1725513_-|CRISPR-associated-endonuclease-Cas1
MIVYITEQGAYITIAGERLVIRKNGNIVGTFLSKDLDQIVIMGNISITTQAMKHMLKNKIDTVFTTYSGKYLGRLVAELGKNIVLRRMQFETLSDENIKLSLARSIIGSKVKNCIQTLRKFNYYHKSGEVSKILNQLTASLKEIDKIDNISSLLGFEGRTANLYFRAFDHLLKGPIFFEKRTRRPPQNEFNAMLSFGYTILLNLVRTSVNTVGLDPYYGAYHAEEYGRPSLVLDLMEEFRPVAVDFPVISSVNKNIMQKSDFVWNTDGDPDKLPVQLTVFGRKKFISLLEKRFNQKFWHDTKMRNMSLRDIIRYQCYLFSKSLVDKVEYKGFRVSL
>NC_015672.1|WP_013886734.1|1724224_1724506_-|CRISPR-associated-endonuclease-Cas2
MKKHYVICYDISDDRKRNKIDQLLKNKGMRVQKSVFECIITEAEFLKLKDRLVKYIDFDTDSIRYYFLCKHCVEMIETAGNTPTHEEKDLTII
>NC_015672.1|WP_013886741.1|1736262_1736760_-|DUF1998-domain-containing-protein
MELAKFNGERKQKHKELHSEKFCKKELLLAPINLAHIFETDVVIFRFQKLLIDNKSKAVARTLAESARFAAVNLLDLINNEIRATFKIKEDSLDIVLFDSVAGGAGYVSKLFDMDINNFLNSIKKQLSCHEKCNTGCRNCLCDYTNQSFWDIFERKSALEWINMF
>NC_015672.1|WP_083816882.1|1736969_1737500_+|HD-domain-containing-protein
MRNLNNKLFGKFLRYPCSVKSHDSRKHGLFHHTFKLLKQISNLNDVGNKTKDLCLVGAVFHDIGKIKSLHNYVEKSKNIYSYDFLIGHKQNSIEIFDDLSSRINNFPSIYHRLIKNIIIWTHNVDYDVPGTLPGKIISILDNTDAAISSLIEKDKKISVGRFSKLPYQKNYYYKAI
>NC_015672.1|WP_013886742.1|1738279_1738426_+|hypothetical-protein
MKKYQKLYNLKYSDLSKVWGLSEGTLRNWKSSGVFKQGRDYVGRGKNN
>NC_015672.1|WP_013886743.1|1738504_1739554_+|tyrosine-type-recombinase/integrase
MSKKDVKLYKDRNYFLVAFYYNGVRVRERLNLKSSGRKDAEKWAERRRSDIEAKLLENSFEYAKEFPNSKNLRRFGIISHESKNKTFSEVCEEIDEINDLYYKKGIIKRSTVKNYKKNTNILKKWLGEKYVKNISPADIKQFKLEYLESVSVKTVNNKLTSLRNIIRFCAESGYIENDFADSIKNLKTNNAEVDVVENVFTEEEVAAILNHIYKYHRYAYAFYYVGFHTGMRIGELLAMKWSNIDWHSKTYFVQETMTEYTLSRPKTESSIRNVSLFDDVLSVLDYHKKHFGKKSKFIFVNQYGNNYISNNAFTDIVWKPTLEELGLRYRIPSICVTLMQPMRSSTEKI
>NC_015672.1|WP_041262577.1|1740127_1740520_+|YjbQ-family-protein
MEVGFSVADITGKISDFVEKSGFKEGTVNVFAKGSTASVTTTEYEPGTVKDLRQLFHQLAPAGKYYEHHKTWNDGNGHSHLQASILGPSITLPVQNGNILTGTWQQIILINHDVRERKRTVVLTAIGNFY
>NC_015672.1|WP_013886748.1|1744576_1744837_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MYDLEFSENAKKFIKKLPANDKKKIKSKLETLAKDPDKLKNNIKKLKGEYGDFFRLRISNYRLIYKRYDKRLVIYILKAGHRKDVY
>NC_015672.1|WP_013886749.1|1744829_1745030_-|hypothetical-protein
MEAPNLTYIVDEKQKKKAVVIPIEEWQAILEELQDYYDVKEATEILKRIEAGTEKTYSMDEVFNDV
>NC_015672.1|WP_013886750.1|1745166_1746318_-|site-specific-integrase
MAVYNRCNNCKSLNKPTNKNCKNCNEKLGKHFYITYKISGKSRLEYAGNRLTDARNLDIQRKTEKMQGKLKLPDKKQNVPFWKDIVENEYLPDARDRLRSFKATKSRYEEVRDFKGFQKPIDQLTIQDLDSYLDWQRKYTDRTASTINRNLTVARSIMSFICERKKDIVPNNPWRDFKLLKEHNKERRSLSINEMQDLLDACKGKNYYIYAVVLIACWTGARRGEILNLRWRDVNDFAETLTLRHTKNGKDRTIPYSHFKNELLPELEKIKEITGNYEYVFTNPDTGTKLTDIKRAYRSALKEAGITDADFHCLRHTAISNMSHAGFSDIQISYISGHEDIQVIKRYSHSNISQKTEMMNDFRQFIDSQKGKKKVVDITEKAK
>NC_015672.1|WP_013886751.1|1746599_1747556_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MKKTKIVITLGDPAGIGPEITAKLLSHTWITDNYHIIISGNRHLLLKWIKKIPSNIDILEEDKFSGFNFPTGVTDKFAGEASILYIKNAVELIQNGEAEALCTCPINKKSIQMAGYDYKGHTDLLAELTNSHDYSMMLMCEYMKVVLATTHIPLREVPDNIKPDKLLKTIKNTHNAGRLFGTPEPKIAVSGLNPHSGDEGVIGFEEQKIIDPVIGEAENLGINIEGPFAADSLFTEKNLNRYDFFIAMYHDQGLIPLKMKCFSEAVNVTLNLPIIRTSVDHGTAYDIAGKNIASENSLIQAVKTADKMVRNAKANKNI
>NC_015672.1|WP_013886752.1|1747530_1748337_+|ribosomal-RNA-small-subunit-methyltransferase-A
MLKLTKIFRDEFGHTDKNFGQHFLVNDHYLNEIVESLEISDEKNIVEIGPGCGALTLKFLEKGAHVTAVEIDKKLVDFLERYLFFYNNLEIIHDDFLNIDKYQLPPQFSFAGNLPYNLSTKILMKTTAFHERIDKMVFMFQKEVASRINAVPNTKDYSWISVISRYFFDIKKIRNIGGGNFWPKTKVNSTVLVFTPRKRHFQDSNREKKFLEMVKKSFVTKRKTLKNNLKNEIPDIENILEELFANKSIRAEQISLEGFIKLYERIYT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015672_3	3.1\|1709372\|49\|NC_015672\|PILER-CR	1709372-1709420	49	NC_015672.1	1428384-1428432	0	1.0
NC_015672_3	3.1\|1709372\|49\|NC_015672\|PILER-CR	1709372-1709420	49	NC_015672.1	1426648-1426696	1	0.98

1. spacer 3.1|1709372|49|NC_015672|PILER-CR matches to position: 1428384-1428432, mismatch: 0, identity: 1.0

acatttgcgcaatatctcatcgcaaatgtttctgttcagagcttgctgg	CRISPR spacer
acatttgcgcaatatctcatcgcaaatgtttctgttcagagcttgctgg	Protospacer
*************************************************

2. spacer 3.1|1709372|49|NC_015672|PILER-CR matches to position: 1426648-1426696, mismatch: 1, identity: 0.98

acatttgcgcaatatctcatcgcaaatgtttctgttcagagcttgctgg	CRISPR spacer
acatttgcgcaatatcccatcgcaaatgtttctgttcagagcttgctgg	Protospacer
****************.********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015672_1	1.30\|1013411\|36\|NC_015672\|CRISPRCasFinder,CRT,PILER-CR	1013411-1013446	36	MN693380	Marine virus AFVG_25M72, complete genome	41514-41549	6	0.833
NC_015672_7	7.6\|1734706\|38\|NC_015672\|CRISPRCasFinder,CRT,PILER-CR	1734706-1734743	38	NC_011412	Clostridium perfringens plasmid pCP8533etx, complete sequence	64601-64638	8	0.789
NC_015672_1	1.8\|1011983\|35\|NC_015672\|CRISPRCasFinder,CRT,PILER-CR	1011983-1012017	35	NZ_AP019741	Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA1, complete sequence	55619-55653	9	0.743
NC_015672_1	1.8\|1011983\|35\|NC_015672\|CRISPRCasFinder,CRT,PILER-CR	1011983-1012017	35	NZ_CP009218	Rickettsiales bacterium Ac37b plasmid 1, complete sequence	36470-36504	11	0.686

1. spacer 1.30|1013411|36|NC_015672|CRISPRCasFinder,CRT,PILER-CR matches to MN693380 (Marine virus AFVG_25M72, complete genome) position: , mismatch: 6, identity: 0.833

ttgctactgctgacatagttcctttaatgctcacta-	CRISPR spacer
ttgctactgctgatatcgttcctttaata-ttattag	Protospacer
*************.** ***********. *.*.**

2. spacer 7.6|1734706|38|NC_015672|CRISPRCasFinder,CRT,PILER-CR matches to NC_011412 (Clostridium perfringens plasmid pCP8533etx, complete sequence) position: , mismatch: 8, identity: 0.789

--taatcaagaaataaaaaaggaggaaaaaaatgttttta	CRISPR spacer
ggtactta--aaataaaataggaggaaataaatgtttatg	Protospacer
  ** *.*  ******** ********* ******** *.

3. spacer 1.8|1011983|35|NC_015672|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019741 (Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413 plasmid pARA1, complete sequence) position: , mismatch: 9, identity: 0.743

cacttg---agatatttgaatattatttttattagaag	CRISPR spacer
---ttaaatagatatttgaatggtatttttattaatat	Protospacer
   **.   ************. ***********. *

4. spacer 1.8|1011983|35|NC_015672|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009218 (Rickettsiales bacterium Ac37b plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

cacttgagatatttgaatattatttttattagaag	CRISPR spacer
taaagcagatattttagtattatttttattaatca	Protospacer
.*    ******** *.**************.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

137532 : 181651

Burkholderia_phage(14.29%)

protease,transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013885342.1\|137532_137829_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_013885343.1\|137850_139311_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_013885344.1\|139340_139748_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_013885345.1\|139759_141196_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_013885346.1\|141205_141607_+	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_013885347.1\|141992_143201_-	sulfurtransferase	NA	NA	NA	NA
WP_013885348.1\|143953_144514_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013885349.1\|144701_146021_-\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_013885350.1\|146278_146485_+	hypothetical protein	NA	NA	NA	NA
WP_052297420.1\|146500_147601_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_013885353.1\|149846_150038_-	ferredoxin	NA	NA	NA	NA
WP_013885354.1\|150471_151107_+	flavodoxin family protein	NA	NA	NA	NA
WP_013885355.1\|151381_152431_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_013885356.1\|152636_155702_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	8.4e-64	24.1
WP_013885357.1\|155802_156945_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_013885358.1\|156941_158219_-	TolC family protein	NA	NA	NA	NA
WP_013885359.1\|158215_158848_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013885360.1\|159366_159684_+	cupin domain-containing protein	NA	NA	NA	NA
WP_013885361.1\|159734_160967_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013885349.1\|161114_162434_+\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_013885362.1\|162853_163753_+	EamA family transporter	NA	NA	NA	NA
WP_013885363.1\|164295_164493_+	nitroreductase family protein	NA	NA	NA	NA
WP_013885364.1\|164614_166291_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013885365.1\|166413_166782_+	DUF488 family protein	NA	NA	NA	NA
WP_013885367.1\|167195_168575_+	trigger factor	NA	NA	NA	NA
WP_013885368.1\|168574_169162_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.6e-54	54.4
WP_013885369.1\|169226_170468_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.3e-127	54.9
WP_013885370.1\|170537_172871_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	6.2e-176	43.4
WP_013885371.1\|172870_173095_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_013885372.1\|173126_174287_-	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA
WP_013885373.1\|174396_174927_+	macro domain-containing protein	Q9WJD4	Cabassou_virus	6.3e-12	41.5
WP_148255735.1\|175128_176070_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013885375.1\|176765_178178_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	6.2e-46	30.3
WP_148255736.1\|178554_179979_+	thiolase family protein	NA	NA	NA	NA
WP_169310267.1\|179983_180133_+	hypothetical protein	NA	NA	NA	NA
WP_013885349.1\|180331_181651_-\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

314982 : 365515

Planktothrix_phage(12.5%)

tRNA,transposase,integrase

attL 316672:316731|attR 352465:352527

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013885497.1\|314982_316302_-\|transposase	transposase	NA	NA	NA	NA
316672:316731	attL	NA	NA	NA	NA
WP_169310265.1\|317410_317575_+	hypothetical protein	NA	NA	NA	NA
WP_013885500.1\|317596_318406_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_013885501.1\|318425_319370_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_083816909.1\|319446_320106_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-34	41.2
WP_013885503.1\|320107_321760_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_013885504.1\|321749_322124_-	response regulator	NA	NA	NA	NA
WP_013885505.1\|322129_322633_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_013885237.1\|322717_323983_-\|transposase	transposase	NA	NA	NA	NA
WP_013885506.1\|324717_325029_+	nucleotidyltransferase	NA	NA	NA	NA
WP_013885507.1\|325021_325369_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_013885508.1\|325633_326584_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_013885509.1\|326580_328353_+	SLC13 family permease	Q6A201	Oenococcus_phage	2.4e-07	27.2
WP_041262407.1\|328390_329194_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_041262408.1\|329484_330393_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_013885512.1\|330438_330702_+	four helix bundle protein	NA	NA	NA	NA
WP_013885513.1\|330815_332759_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	9.1e-32	30.1
WP_013885514.1\|332890_333820_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_013885515.1\|333876_334185_-\|transposase	transposase	NA	NA	NA	NA
WP_013885516.1\|334441_334756_+	nucleotidyltransferase	NA	NA	NA	NA
WP_013885517.1\|334748_334970_+	DUF86 domain-containing protein	NA	NA	NA	NA
WP_013885518.1\|335410_335749_+	hypothetical protein	NA	NA	NA	NA
WP_013885519.1\|335780_337616_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013885520.1\|337816_338905_-	MFS transporter	NA	NA	NA	NA
WP_013885521.1\|339315_340197_+	membrane protein	NA	NA	NA	NA
WP_013885522.1\|340214_340655_-	CBS domain-containing protein	NA	NA	NA	NA
WP_041262410.1\|340651_341014_-	cupin domain-containing protein	NA	NA	NA	NA
WP_013885524.1\|341118_342318_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_013885525.1\|342298_342499_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_013885526.1\|342504_342903_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_013885527.1\|343703_343967_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041262249.1\|343963_345271_+	TolC family protein	NA	NA	NA	NA
WP_013885529.1\|345290_346478_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_013885530.1\|346478_349754_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_013885531.1\|349770_349962_+	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_169310269.1\|350248_351421_+	MFS transporter	NA	NA	NA	NA
WP_013885533.1\|351505_352273_-	patatin-like phospholipase family protein	M1ICD6	Paramecium_bursaria_Chlorella_virus	8.1e-08	29.8
WP_013885534.1\|352849_353521_+	GntR family transcriptional regulator	NA	NA	NA	NA
352465:352527	attR	NA	NA	NA	NA
WP_013885535.1\|353523_354189_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_013885536.1\|354307_354541_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_013885537.1\|354560_355256_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_013885538.1\|355256_357488_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.1e-165	42.4
WP_013885539.1\|357484_358876_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.8e-50	32.7
WP_148255737.1\|359001_359220_+	hypothetical protein	NA	NA	NA	NA
WP_013885541.1\|359464_360097_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_013885542.1\|360083_361286_+	U32 family peptidase	Q6DW11	Phage_TP	5.1e-49	34.0
WP_013885543.1\|361282_363262_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	2.2e-110	37.0
WP_013885544.1\|363261_364074_+	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_013885545.1\|364195_365515_+\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

574600 : 632824

Burkholderia_phage(30.0%)

transposase,tRNA,integrase

attL 602523:602540|attR 636512:636529

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013885355.1\|574600_575650_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_013885355.1\|576019_577069_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_013885349.1\|577538_578858_-\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_013885750.1\|578975_582209_+	PAS domain S-box protein	NA	NA	NA	NA
WP_013885751.1\|582281_583076_+	hypothetical protein	NA	NA	NA	NA
WP_013885752.1\|583079_583943_+	hypothetical protein	NA	NA	NA	NA
WP_013885753.1\|583929_584832_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.8e-30	36.1
WP_013885754.1\|584902_585421_-	hypothetical protein	NA	NA	NA	NA
WP_013885755.1\|585546_586059_+	nitroreductase family protein	NA	NA	NA	NA
WP_013885756.1\|587429_588383_+	YitT family protein	NA	NA	NA	NA
WP_013885757.1\|588388_588637_-	hypothetical protein	NA	NA	NA	NA
WP_013885758.1\|588917_589658_-	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA
WP_013885759.1\|589743_591009_-	coproporphyrinogen III oxidase family protein	NA	NA	NA	NA
WP_041262261.1\|591392_591575_+	hypothetical protein	NA	NA	NA	NA
WP_013885760.1\|591564_592671_+	HAMP domain-containing histidine kinase	A0A2K9L5I4	Tupanvirus	8.9e-08	23.8
WP_013885761.1\|592651_593989_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_013885762.1\|594191_594617_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_013885763.1\|595092_595800_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_013885764.1\|595834_596062_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_013885765.1\|596042_597296_+	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA
WP_013885766.1\|597285_598095_+	HesA/MoeB/ThiF family protein	A0A1V0SAV8	Catovirus	8.8e-13	29.6
WP_013885767.1\|598098_598494_+	M67 family metallopeptidase	NA	NA	NA	NA
WP_013885768.1\|598495_600793_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_013885769.1\|600804_601572_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_013885770.1\|601560_602010_-	siroheme synthase	NA	NA	NA	NA
WP_013885771.1\|602025_602511_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
602523:602540	attL	NA	NA	NA	NA
WP_013885772.1\|602703_603423_-	hypothetical protein	NA	NA	NA	NA
WP_013885773.1\|603409_604438_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_013885774.1\|604512_604965_-	SoxR reducing system RseC family protein	NA	NA	NA	NA
WP_013885775.1\|605056_607681_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_013885776.1\|607960_608860_+	hypothetical protein	NA	NA	NA	NA
WP_013885777.1\|608863_610843_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_013885778.1\|610839_611325_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_013885779.1\|611337_611673_+	hypothetical protein	NA	NA	NA	NA
WP_013885780.1\|611665_612559_+	hypothetical protein	NA	NA	NA	NA
WP_013885781.1\|612574_613087_+	hypothetical protein	NA	NA	NA	NA
WP_013885782.1\|613087_613669_+	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_013885783.1\|613650_614781_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_013885784.1\|614798_615506_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.8e-29	37.8
WP_013885785.1\|615498_616605_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_013885786.1\|616742_617597_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_013885787.1\|617720_618602_+\|transposase	transposase	NA	NA	NA	NA
WP_083816846.1\|618770_618881_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_013885788.1\|619062_619818_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_013885789.1\|619919_621212_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.1e-20	34.0
WP_013885790.1\|621187_621826_+	dethiobiotin synthase	NA	NA	NA	NA
WP_013885791.1\|621812_622772_+	biotin synthase BioB	NA	NA	NA	NA
WP_013885792.1\|622768_623914_+	pyridoxal phosphate-dependent aminotransferase family protein	D2TEZ5	Emiliania_huxleyi_virus	4.1e-32	29.7
WP_013885793.1\|623892_624495_+	hypothetical protein	NA	NA	NA	NA
WP_013885794.1\|624491_625247_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_013885795.1\|625563_626850_+	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA
WP_013885796.1\|626867_627815_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	2.9e-68	47.9
WP_013885797.1\|628036_628375_-	hypothetical protein	NA	NA	NA	NA
WP_013885798.1\|628337_629003_-	hypothetical protein	NA	NA	NA	NA
WP_013885799.1\|629187_629421_-	hypothetical protein	NA	NA	NA	NA
WP_148255741.1\|629571_629850_-	hypothetical protein	NA	NA	NA	NA
WP_041262266.1\|630196_630382_+	hypothetical protein	NA	NA	NA	NA
WP_013885355.1\|630545_631595_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_052297427.1\|631708_632824_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
636512:636529	attR	NA	NA	NA	NA

DBSCAN-SWA_4

693978 : 747665

Acanthocystis_turfacea_Chlorella_virus(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013885855.1\|693978_695655_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013885856.1\|695726_696011_-	rubrerythrin domain-containing protein	NA	NA	NA	NA
WP_013885857.1\|696125_696935_-	DUF169 domain-containing protein	NA	NA	NA	NA
WP_013885237.1\|697031_698297_-\|transposase	transposase	NA	NA	NA	NA
WP_013885858.1\|698530_699628_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_013885859.1\|699631_699868_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_148255745.1\|699900_702327_+	PAS domain S-box protein	NA	NA	NA	NA
WP_013885861.1\|702501_703089_+	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_013885862.1\|703132_703711_-	fumarate hydratase C-terminal domain-containing protein	NA	NA	NA	NA
WP_013885863.1\|703703_704570_-	fumarate hydratase	NA	NA	NA	NA
WP_041262464.1\|704959_707503_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_013885865.1\|707989_710233_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_013885866.1\|710301_711276_+	malate dehydrogenase	NA	NA	NA	NA
WP_013885867.1\|711428_712604_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_013885868.1\|712606_713479_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_013885869.1\|713490_713691_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_013885870.1\|713703_714840_+	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA
WP_013885871.1\|714840_715656_+	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA
WP_013885872.1\|715658_716195_+	2-oxoacid:acceptor oxidoreductase family protein	NA	NA	NA	NA
WP_013885873.1\|716240_716534_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_013885874.1\|716784_717495_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_013885875.1\|717511_719281_-	succinate dehydrogenase flavoprotein subunit	M1GXT4	Acanthocystis_turfacea_Chlorella_virus	1.7e-16	27.3
WP_013885876.1\|719306_719624_-	succinate dehydrogenase	NA	NA	NA	NA
WP_013885877.1\|719635_719989_-	succinate dehydrogenase	NA	NA	NA	NA
WP_013885237.1\|720661_721927_+\|transposase	transposase	NA	NA	NA	NA
WP_013885878.1\|722082_723402_+\|transposase	transposase	NA	NA	NA	NA
WP_013885879.1\|723688_725272_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-60	38.4
WP_013885880.1\|725284_725902_+	carbonic anhydrase	NA	NA	NA	NA
WP_013885881.1\|725904_726627_+	acyl-ACP thioesterase	NA	NA	NA	NA
WP_013885883.1\|727571_728840_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_013885884.1\|728841_730113_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_013885885.1\|730105_730471_-	phosphomannose isomerase type II C-terminal cupin domain	M1I1H5	Paramecium_bursaria_Chlorella_virus	6.3e-19	45.3
WP_013885886.1\|730495_731311_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_013885887.1\|731314_731686_-	DUF1992 domain-containing protein	NA	NA	NA	NA
WP_013885888.1\|731756_732458_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_083816850.1\|732457_733555_+	KamA family radical SAM protein	NA	NA	NA	NA
WP_013885890.1\|733761_735078_+	glutamine synthetase	NA	NA	NA	NA
WP_013885891.1\|735677_736949_-	dihydroorotase	NA	NA	NA	NA
WP_013885892.1\|736948_737878_-	aspartate carbamoyltransferase catalytic subunit	NA	NA	NA	NA
WP_013885893.1\|737880_738459_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_148255746.1\|738863_740504_+	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_013885895.1\|740575_741943_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013885896.1\|742088_743642_-	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	2.1e-07	34.6
WP_013885897.1\|743731_744460_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_013885898.1\|744460_745078_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_013885355.1\|746615_747665_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4

DBSCAN-SWA_5

753901 : 823284

Burkholderia_phage(27.27%)

holin,transposase,integrase

attL 746503:746562|attR 809832:811168

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
746503:746562	attL	NA	NA	NA	NA
WP_013885515.1\|753901_754210_+\|transposase	transposase	NA	NA	NA	NA
WP_013885904.1\|754266_755196_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_013885905.1\|755284_755872_+	class II glutamine amidotransferase	M1HTS9	Paramecium_bursaria_Chlorella_virus	3.7e-29	40.8
WP_013885355.1\|756690_757740_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_013885906.1\|758064_759309_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.6e-48	39.1
WP_013885907.1\|761087_762137_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_013885908.1\|762745_763432_-	ATP-binding protein	A0A1W6JP39	Morganella_phage	1.6e-07	28.5
WP_013885239.1\|763418_764942_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_148255747.1\|765087_765828_+\|transposase	transposase	NA	NA	NA	NA
WP_013885910.1\|765927_768900_+	SLBB domain-containing protein	NA	NA	NA	NA
WP_013885911.1\|768907_769822_+	LPS biosynthesis protein	NA	NA	NA	NA
WP_013885912.1\|769818_771333_+	hypothetical protein	NA	NA	NA	NA
WP_013885913.1\|771343_772942_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_013885914.1\|773318_773705_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_148255809.1\|773740_774169_+	hypothetical protein	NA	NA	NA	NA
WP_148255748.1\|774162_774447_+	DUF1820 family protein	NA	NA	NA	NA
WP_013885917.1\|774443_775481_+	YjgP/YjgQ family permease	NA	NA	NA	NA
WP_013885918.1\|775477_776563_+	LptF/LptG family permease	NA	NA	NA	NA
WP_013885919.1\|776670_777747_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_013885920.1\|777924_780057_-	LUD domain-containing protein	NA	NA	NA	NA
WP_013885921.1\|780065_780539_-	LUD domain-containing protein	NA	NA	NA	NA
WP_013885922.1\|780804_781890_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA
WP_013885923.1\|782102_782612_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_013885924.1\|782601_783924_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_013885925.1\|783935_785309_+	FAD-binding protein	NA	NA	NA	NA
WP_013885926.1\|785310_786564_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_013885927.1\|786532_787267_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_013885928.1\|787439_788018_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_013885929.1\|788416_791998_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_041262475.1\|792531_794160_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	8.4e-31	25.8
WP_013885931.1\|794786_795125_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_013885932.1\|795158_796571_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_169310274.1\|797452_797995_+	chemotaxis protein CheD	NA	NA	NA	NA
WP_052297431.1\|797987_798260_+	hypothetical protein	NA	NA	NA	NA
WP_013885934.1\|798586_804616_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	3.5e-66	33.3
WP_013885935.1\|804618_805599_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.0e-15	37.1
WP_013885936.1\|805601_807524_+	response regulator	NA	NA	NA	NA
WP_013885937.1\|808242_809526_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_148255752.1\|809642_809795_+	DUF454 domain-containing protein	NA	NA	NA	NA
WP_013885355.1\|809944_810994_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_041262478.1\|811795_812503_+	GntR family transcriptional regulator	NA	NA	NA	NA
809832:811168	attR	NA	NA	NA	NA
WP_013885939.1\|812530_814174_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.8e-65	33.9
WP_013885940.1\|814189_815662_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_013885941.1\|815758_816721_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013885942.1\|816823_817564_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	NA	NA	NA
WP_013885943.1\|817723_817933_-	hypothetical protein	NA	NA	NA	NA
WP_013885944.1\|818182_820231_-	ribonucleoside triphosphate reductase	D9ZNH0	Clostridium_phage	4.9e-137	44.7
WP_013885945.1\|821018_821774_-	HTH domain-containing protein	NA	NA	NA	NA
WP_013885497.1\|821964_823284_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

835023 : 892328

Enterobacteria_phage(16.67%)

protease,transposase,tRNA,integrase

attL 852305:852364|attR 884531:884590

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013885958.1\|835023_837825_+\|tRNA	isoleucine--tRNA ligase	A0A2K9L260	Tupanvirus	2.5e-91	27.9
WP_013885959.1\|837869_838346_+	signal peptidase II	NA	NA	NA	NA
WP_041262481.1\|838341_839886_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.3e-76	50.5
WP_013885961.1\|840062_841346_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_013885962.1\|841342_841849_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.7e-22	43.5
WP_052297432.1\|841861_842461_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	3.2e-12	33.3
WP_013885964.1\|842467_842887_+	hypothetical protein	NA	NA	NA	NA
WP_013885965.1\|842911_843349_-	hypothetical protein	NA	NA	NA	NA
WP_013885966.1\|843672_844749_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_013885967.1\|844735_845227_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013885968.1\|845900_846614_-	sel1 repeat family protein	NA	NA	NA	NA
WP_013885969.1\|846792_847635_+	hypothetical protein	NA	NA	NA	NA
WP_013885970.1\|847658_848813_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.1e-80	43.3
WP_013885971.1\|848824_849667_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.5e-26	33.1
WP_083816852.1\|849803_850271_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-32	49.3
852305:852364	attL	NA	NA	NA	NA
WP_013885972.1\|852812_853931_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013885973.1\|854003_854906_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_013885974.1\|854908_856144_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_013885975.1\|856127_856922_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	6.8e-10	25.8
WP_013885976.1\|856908_857619_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.4e-16	27.5
WP_041262277.1\|857615_858014_-	hypothetical protein	NA	NA	NA	NA
WP_041262278.1\|858081_858525_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_013885355.1\|858659_859709_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_013885977.1\|859990_860983_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_013885978.1\|860986_862036_-	hypothetical protein	NA	NA	NA	NA
WP_169310275.1\|862143_864201_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_013885980.1\|864290_865415_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_013885981.1\|865415_866261_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_013885982.1\|866482_866773_+	hypothetical protein	NA	NA	NA	NA
WP_052297433.1\|867255_867831_+	outer membrane protein transport protein	NA	NA	NA	NA
WP_013885237.1\|867810_869076_-\|transposase	transposase	NA	NA	NA	NA
WP_041262279.1\|869270_869993_+	TonB-dependent receptor	NA	NA	NA	NA
WP_013885983.1\|870023_872093_+	hypothetical protein	NA	NA	NA	NA
WP_013885984.1\|872552_873056_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA
WP_013885985.1\|873142_874417_+	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA
WP_013885986.1\|874416_874809_+	ectoine synthase	NA	NA	NA	NA
WP_013885987.1\|874981_875602_-	CBS domain-containing protein	NA	NA	NA	NA
WP_013885988.1\|876147_877161_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013885989.1\|877512_878043_+\|integrase	site-specific integrase	T2KT84	uncultured_phage	2.4e-11	36.3
WP_013885990.1\|877996_878368_-	hypothetical protein	NA	NA	NA	NA
WP_013885991.1\|878342_878609_-	hypothetical protein	NA	NA	NA	NA
WP_013885908.1\|880364_881051_+	ATP-binding protein	A0A1W6JP39	Morganella_phage	1.6e-07	28.5
WP_041262280.1\|881502_881835_-	hypothetical protein	NA	NA	NA	NA
WP_041262281.1\|881831_882566_-	hypothetical protein	NA	NA	NA	NA
WP_013885992.1\|882586_882955_-	hypothetical protein	NA	NA	NA	NA
WP_013885995.1\|884799_885129_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
884531:884590	attR	NA	NA	NA	NA
WP_083816855.1\|885092_885239_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_013885996.1\|885269_886145_+	PDZ domain-containing protein	NA	NA	NA	NA
WP_013885997.1\|886619_888473_+	type II secretion system secretin GspD	NA	NA	NA	NA
WP_013885998.1\|888472_889927_+	type II/IV secretion system protein	NA	NA	NA	NA
WP_013885999.1\|889926_891123_+	type II secretion system F family protein	NA	NA	NA	NA
WP_013886000.1\|891314_892328_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1332400 : 1403286

Planktothrix_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013885594.1\|1332400_1334236_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013886395.1\|1334304_1334520_-	hypothetical protein	NA	NA	NA	NA
WP_013886396.1\|1334718_1335615_-	GGDEF domain-containing protein	G3MA91	Bacillus_virus	2.6e-21	35.6
WP_013886397.1\|1336010_1336751_-	DMT family transporter	NA	NA	NA	NA
WP_013885355.1\|1336866_1337916_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_041262305.1\|1338050_1338233_-	EamA family transporter	NA	NA	NA	NA
WP_013886398.1\|1338241_1338481_-	hypothetical protein	NA	NA	NA	NA
WP_013886399.1\|1338520_1338796_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_013886402.1\|1340658_1342026_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013886403.1\|1342543_1343260_-	methyltransferase	NA	NA	NA	NA
WP_013886404.1\|1343246_1346261_-	PAS domain S-box protein	NA	NA	NA	NA
WP_013886405.1\|1346741_1346930_+	hypothetical protein	NA	NA	NA	NA
WP_013886406.1\|1346922_1347177_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_013886407.1\|1347959_1349114_-	peptidoglycan DD-metalloendopeptidase family protein	V5R8R0	Arthrobacter_phage	1.9e-16	41.4
WP_148255819.1\|1349118_1349652_-	VTT domain-containing protein	NA	NA	NA	NA
WP_013886409.1\|1349720_1351370_-	DNA repair protein RecN	NA	NA	NA	NA
WP_041262546.1\|1351369_1352224_-	NAD(+)/NADH kinase	NA	NA	NA	NA
WP_013886411.1\|1352198_1353008_-	TlyA family RNA methyltransferase	NA	NA	NA	NA
WP_052297468.1\|1352989_1354849_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_013886413.1\|1355078_1355978_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_013886414.1\|1355958_1356198_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_013886415.1\|1356573_1357632_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.1e-14	23.4
WP_013886416.1\|1357856_1359944_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.0e-89	30.0
WP_013886417.1\|1359947_1360244_-	helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	2.2e-06	35.4
WP_013886418.1\|1361417_1361804_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.7e-09	32.8
WP_013886420.1\|1363058_1364108_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.8e-13	23.1
WP_083816871.1\|1364784_1365027_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.3e-16	51.3
WP_013886422.1\|1365023_1367519_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_013886423.1\|1367749_1369672_+	transketolase	NA	NA	NA	NA
WP_013886424.1\|1369926_1370652_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.7e-13	29.8
WP_013886425.1\|1370641_1371412_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.4e-14	23.7
WP_013886426.1\|1371413_1372358_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_013886427.1\|1372357_1373257_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_013886428.1\|1373282_1374407_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041262307.1\|1375261_1376611_+	TrpB-like pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_013886430.1\|1376670_1377252_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_013886431.1\|1377252_1377474_+	DUF2905 domain-containing protein	NA	NA	NA	NA
WP_013886432.1\|1377546_1377750_-	cold shock domain-containing protein	A0A1X9IGI9	Lactococcus_phage	3.6e-16	61.7
WP_013886433.1\|1377903_1378302_+	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA
WP_013886434.1\|1378320_1380249_-	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_041262308.1\|1380232_1380487_-	hypothetical protein	NA	NA	NA	NA
WP_041262309.1\|1380449_1381142_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_013886435.1\|1381138_1382071_-	AAA family ATPase	NA	NA	NA	NA
WP_013886436.1\|1382508_1382769_+	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_013886437.1\|1382781_1384596_+	cation acetate symporter	NA	NA	NA	NA
WP_013886438.1\|1384715_1385078_+	hypothetical protein	NA	NA	NA	NA
WP_013886439.1\|1385092_1387012_+	CBS domain-containing protein	A0A2I6B2H4	Macacine_betaherpesvirus	1.4e-05	25.0
WP_013886440.1\|1387524_1390083_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	9.7e-199	43.6
WP_013886441.1\|1390082_1390568_+	hypothetical protein	NA	NA	NA	NA
WP_013886442.1\|1390551_1391469_+	DNA polymerase III delta	NA	NA	NA	NA
WP_013886443.1\|1391422_1392103_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA
WP_013886444.1\|1392213_1392903_+	lytic transglycosylase domain-containing protein	U5PVY0	Bacillus_phage	3.2e-08	35.8
WP_013886445.1\|1393072_1393558_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013886446.1\|1393523_1395254_-	ABC-ATPase domain-containing protein	NA	NA	NA	NA
WP_013886447.1\|1395416_1396163_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
WP_013886448.1\|1396220_1396886_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_148255820.1\|1396885_1397608_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	6.2e-34	41.7
WP_013886450.1\|1397887_1400488_-	pyruvate, phosphate dikinase	NA	NA	NA	NA
WP_013886451.1\|1400594_1401944_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
WP_013886452.1\|1402020_1403286_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1479959 : 1488827

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013886517.1\|1479959_1481765_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.4e-20	29.6
WP_013886518.1\|1481754_1482873_+	ABC transporter permease	NA	NA	NA	NA
WP_013886519.1\|1482869_1483976_+	ABC transporter permease	NA	NA	NA	NA
WP_013886520.1\|1484084_1484678_+	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	1.6e-19	45.0
WP_013886521.1\|1484661_1485354_-	3'-5' exonuclease	A0A088C4F9	Flavobacterium_sp._phage	6.6e-09	28.9
WP_013886522.1\|1485450_1485810_-	ribosome silencing factor	NA	NA	NA	NA
WP_013886523.1\|1485809_1486448_-	nicotinate-nucleotide adenylyltransferase	G3MA22	Bacillus_virus	9.3e-10	23.5
WP_041262551.1\|1486451_1487672_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.1e-94	47.3
WP_013886525.1\|1487693_1488827_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.3e-58	36.2

DBSCAN-SWA_9

1683055 : 1746318

Geobacillus_virus(14.29%)

transposase,lysis,integrase

attL 1740593:1740641|attR 1746476:1746524

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013886700.1\|1683055_1683748_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_013886701.1\|1683744_1684530_+	pseudouridine synthase	NA	NA	NA	NA
WP_013886702.1\|1684568_1685900_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013886703.1\|1685915_1686359_+	universal stress protein	NA	NA	NA	NA
WP_013886704.1\|1686432_1687686_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_013886705.1\|1687915_1688188_-	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	7.5e-17	52.2
WP_013886706.1\|1688462_1689962_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_013886707.1\|1690198_1690471_+	YrhK family protein	A0A2H4IYD3	uncultured_Caudovirales_phage	2.4e-15	54.7
WP_169310289.1\|1690553_1692134_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	6.9e-62	31.0
WP_013886709.1\|1692361_1692910_-	hypothetical protein	NA	NA	NA	NA
WP_013886710.1\|1693819_1694500_-	hypothetical protein	NA	NA	NA	NA
WP_013886711.1\|1694960_1695875_-	WYL domain-containing protein	NA	NA	NA	NA
WP_013886712.1\|1695892_1696234_-	hypothetical protein	NA	NA	NA	NA
WP_013886713.1\|1696327_1696960_+	hypothetical protein	NA	NA	NA	NA
WP_013886714.1\|1697020_1697518_-	hypothetical protein	NA	NA	NA	NA
WP_013886715.1\|1697555_1698053_-	hypothetical protein	NA	NA	NA	NA
WP_013886717.1\|1698624_1700028_+	ATP-binding protein	NA	NA	NA	NA
WP_013886718.1\|1700229_1703247_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_013886719.1\|1703239_1706488_+	UvrD-helicase domain-containing protein	G3MA40	Bacillus_virus	9.3e-13	22.1
WP_013886720.1\|1706613_1706841_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_013886721.1\|1706841_1707243_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_013886722.1\|1707264_1707711_+	hypothetical protein	NA	NA	NA	NA
WP_013885895.1\|1707786_1709154_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013886724.1\|1712960_1713365_-	hypothetical protein	NA	NA	NA	NA
WP_013886725.1\|1713351_1714668_-	type III-B CRISPR module RAMP protein Cmr6	NA	NA	NA	NA
WP_013886726.1\|1714651_1715074_-	type III-B CRISPR module-associated protein Cmr5	NA	NA	NA	NA
WP_013886727.1\|1715070_1716024_-	type III-B CRISPR module RAMP protein Cmr4	NA	NA	NA	NA
WP_013886728.1\|1716039_1716948_-	CRISPR-associated protein, Cmr3	NA	NA	NA	NA
WP_013886729.1\|1716940_1719643_-	type III-B CRISPR-associated protein Cas10/Cmr2	NA	NA	NA	NA
WP_013886730.1\|1719633_1720527_-	type III-B CRISPR module RAMP protein Cmr1	NA	NA	NA	NA
WP_013886731.1\|1720527_1721787_-	TIGR02221 family CRISPR-associated protein	NA	NA	NA	NA
WP_013886732.1\|1721779_1722691_-	CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6	NA	NA	NA	NA
WP_013886733.1\|1722808_1724224_+	cold-shock protein	NA	NA	NA	NA
WP_013886734.1\|1724224_1724506_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_013886735.1\|1724502_1725513_-	CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_013886736.1\|1725509_1727267_-	DNA primase	NA	NA	NA	NA
WP_013886737.1\|1727384_1727696_+	hypothetical protein	NA	NA	NA	NA
WP_013885349.1\|1727894_1729214_-\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_013885355.1\|1729517_1730567_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_169310290.1\|1730748_1730904_+	hypothetical protein	NA	NA	NA	NA
WP_013886738.1\|1730893_1731559_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013886739.1\|1731548_1732463_+	hypothetical protein	NA	NA	NA	NA
WP_013886740.1\|1732446_1733964_+	SAVED domain-containing protein	NA	NA	NA	NA
WP_013886741.1\|1736262_1736760_-	DUF1998 domain-containing protein	NA	NA	NA	NA
WP_083816882.1\|1736969_1737500_+	HD domain-containing protein	NA	NA	NA	NA
WP_013886742.1\|1738279_1738426_+	hypothetical protein	NA	NA	NA	NA
WP_013886743.1\|1738504_1739554_+\|integrase	tyrosine-type recombinase/integrase	Q20GI2	Phage_258-320	3.2e-15	25.2
WP_041262577.1\|1740127_1740520_+	YjbQ family protein	NA	NA	NA	NA
1740593:1740641	attL	NA	NA	NA	NA
WP_013886748.1\|1744576_1744837_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_013886749.1\|1744829_1745030_-	hypothetical protein	NA	NA	NA	NA
WP_013886750.1\|1745166_1746318_-\|integrase	site-specific integrase	A0A1L7DQ84	Ralstonia_phage	9.2e-16	29.9
1746476:1746524	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1771986 : 1829237

Bacillus_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013886772.1\|1771986_1773375_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	3.8e-24	30.3
WP_013886773.1\|1773358_1774087_-	sigma e regulatory protein, MucB/rseb	NA	NA	NA	NA
WP_013886774.1\|1774083_1774539_-	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_013886775.1\|1774516_1775107_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013885878.1\|1775207_1776527_-\|transposase	transposase	NA	NA	NA	NA
WP_013886776.1\|1776660_1776900_-	rubrerythrin	NA	NA	NA	NA
WP_013886777.1\|1777875_1778421_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013886778.1\|1778621_1778783_+	rubredoxin	NA	NA	NA	NA
WP_013886779.1\|1778836_1780039_+	FprA family A-type flavoprotein	NA	NA	NA	NA
WP_013886780.1\|1780074_1780725_-	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_013886781.1\|1780728_1782015_-	potassium transporter	NA	NA	NA	NA
WP_013886783.1\|1782179_1782401_-	NifU family protein	NA	NA	NA	NA
WP_013886784.1\|1782407_1782857_-	Fe-S cluster assembly scaffold protein NifU	A0A2H4N7M4	Lake_Baikal_phage	6.5e-34	57.5
WP_013886785.1\|1782869_1784051_-	cysteine desulfurase	NA	NA	NA	NA
WP_013886786.1\|1784068_1784851_-	hypothetical protein	NA	NA	NA	NA
WP_013886787.1\|1784921_1785854_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013886788.1\|1785846_1786593_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_013886789.1\|1786573_1787350_-	type III pantothenate kinase	NA	NA	NA	NA
WP_013886790.1\|1787333_1788095_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_013886791.1\|1788087_1788435_-	response regulator	W8CYM9	Bacillus_phage	9.9e-06	36.4
WP_013886792.1\|1788712_1788832_+	desulfoferrodoxin FeS4 iron-binding domain-containing protein	NA	NA	NA	NA
WP_013886793.1\|1788981_1789725_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013886794.1\|1789727_1790219_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_013886795.1\|1790208_1790781_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_013886796.1\|1790847_1791909_-	glycosyltransferase	NA	NA	NA	NA
WP_013886797.1\|1791917_1793051_-	cell division protein FtsZ	NA	NA	NA	NA
WP_013886798.1\|1793071_1794304_-	cell division protein FtsA	NA	NA	NA	NA
WP_013886799.1\|1794290_1794974_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_013886800.1\|1794966_1795872_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_013886801.1\|1795868_1797245_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_013886802.1\|1797244_1798288_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_013886803.1\|1798284_1799364_-	putative lipid II flippase FtsW	NA	NA	NA	NA
WP_013886804.1\|1799356_1800625_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_013886805.1\|1800629_1801715_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_013886806.1\|1801704_1803099_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_013886807.1\|1803085_1804537_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_013886808.1\|1804514_1806212_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_013886809.1\|1806201_1806498_-	hypothetical protein	NA	NA	NA	NA
WP_013886810.1\|1806494_1807421_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_148255777.1\|1807432_1807897_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_013886812.1\|1808210_1808624_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_013886813.1\|1808626_1810033_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_013886814.1\|1810057_1810921_-	ATP synthase F1 subunit gamma	NA	NA	NA	NA
WP_013886815.1\|1810936_1812445_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_013886816.1\|1812472_1813012_-	ATP synthase F1 subunit delta	NA	NA	NA	NA
WP_013886817.1\|1813008_1813569_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_013886818.1\|1813582_1814008_-	ATP synthase F0 subunit B	NA	NA	NA	NA
WP_013886819.1\|1814778_1815375_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013886820.1\|1815501_1815975_+	cytochrome P460 family protein	NA	NA	NA	NA
WP_013886821.1\|1816504_1817776_-	EAL domain-containing protein	NA	NA	NA	NA
WP_013885349.1\|1819193_1820513_+\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_013885271.1\|1821024_1822392_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013885908.1\|1823087_1823774_-	ATP-binding protein	A0A1W6JP39	Morganella_phage	1.6e-07	28.5
WP_013886823.1\|1823760_1825284_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_013886824.1\|1825568_1825757_-	tautomerase family protein	NA	NA	NA	NA
WP_013886825.1\|1825782_1826682_-	lytic murein transglycosylase B	NA	NA	NA	NA
WP_013886826.1\|1826846_1827365_+	4-vinyl reductase 4VR	NA	NA	NA	NA
WP_013886827.1\|1827367_1828015_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.8e-07	37.8
WP_013885355.1\|1828187_1829237_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4

DBSCAN-SWA_11

1835756 : 1882612

Tupanvirus(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013886835.1\|1835756_1838138_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_013886836.1\|1838147_1839161_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	9.9e-30	36.5
WP_013886837.1\|1839265_1839613_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_013886838.1\|1839629_1839827_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_013886839.1\|1839840_1840371_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.2e-10	34.5
WP_013886840.1\|1840374_1842297_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.8e-117	36.3
WP_041262336.1\|1842563_1842902_-	cation transporting ATPase C-terminal domain-containing protein	NA	NA	NA	NA
WP_013886841.1\|1842898_1844083_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013885355.1\|1844477_1845527_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4
WP_052297445.1\|1845564_1847889_-	HAD-IC family P-type ATPase	M1HK51	Paramecium_bursaria_Chlorella_virus	1.5e-81	30.7
WP_013886842.1\|1848102_1848792_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_013886843.1\|1848852_1849275_+	nucleoside recognition protein	NA	NA	NA	NA
WP_013886844.1\|1849265_1849706_+	hypothetical protein	NA	NA	NA	NA
WP_041262587.1\|1849836_1850991_-	AAA family ATPase	NA	NA	NA	NA
WP_013886846.1\|1851636_1852881_-	TolC family protein	NA	NA	NA	NA
WP_013886847.1\|1853259_1856361_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.0e-85	26.1
WP_013886848.1\|1856360_1857413_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_013886849.1\|1857396_1857858_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_041262337.1\|1858062_1860525_+	hypothetical protein	NA	NA	NA	NA
WP_013886851.1\|1860787_1861624_+	four helix bundle protein	A0A0N7ACE0	Bacillus_phage	7.4e-07	26.4
WP_041262338.1\|1861601_1862144_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_013886853.1\|1862532_1862895_+	four helix bundle protein	NA	NA	NA	NA
WP_013886854.1\|1862879_1863752_+	type II secretion system protein	NA	NA	NA	NA
WP_013886855.1\|1863748_1864135_+	hypothetical protein	NA	NA	NA	NA
WP_013886856.1\|1864251_1865619_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_083816887.1\|1865735_1866026_+	hypothetical protein	NA	NA	NA	NA
WP_013885271.1\|1866326_1867694_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013885906.1\|1869482_1870727_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.6e-48	39.1
WP_013886859.1\|1871949_1872531_+	flavodoxin family protein	NA	NA	NA	NA
WP_013886860.1\|1872740_1874216_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_013886861.1\|1874297_1874522_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_013886862.1\|1874522_1875539_+	DUF1786 domain-containing protein	NA	NA	NA	NA
WP_013886863.1\|1875592_1876342_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_013886864.1\|1876334_1877069_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_013886865.1\|1877065_1877299_-	hypothetical protein	NA	NA	NA	NA
WP_148255824.1\|1877879_1878725_+	zinc dependent phospholipase C family protein	NA	NA	NA	NA
WP_013886867.1\|1878973_1879177_+	hypothetical protein	NA	NA	NA	NA
WP_013886868.1\|1879178_1881425_-	glycosyltransferase	NA	NA	NA	NA
WP_013886869.1\|1881562_1882612_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	3.5e-14	23.3

DBSCAN-SWA_12

1972004 : 2090160

110

Bacillus_phage(12.5%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013885878.1\|1972004_1973324_-\|transposase	transposase	NA	NA	NA	NA
WP_013886955.1\|1973787_1974483_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_013886956.1\|1974475_1975147_+	response regulator	NA	NA	NA	NA
WP_013886957.1\|1975150_1976872_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	5.6e-25	32.3
WP_013886958.1\|1977101_1978442_-	2-dehydropantoate 2-reductase	A0A0E3JJF3	Streptomyces_phage	6.3e-16	41.3
WP_013886959.1\|1978419_1980819_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1C3S747	Escherichia_phage	1.3e-115	36.5
WP_041262346.1\|1981013_1981556_+	glycine cleavage system regulatory protein	NA	NA	NA	NA
WP_013886961.1\|1981558_1982062_+	peptide deformylase	A0A2I7S809	Vibrio_phage	4.0e-16	37.7
WP_013886962.1\|1982058_1983033_+	D-glycerate dehydrogenase	M1HTA3	Paramecium_bursaria_Chlorella_virus	1.5e-14	24.4
WP_169310293.1\|1983822_1984371_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_013886964.1\|1984384_1985152_-	ATP-binding protein	NA	NA	NA	NA
WP_041262347.1\|1985141_1985372_-	hypothetical protein	NA	NA	NA	NA
WP_013886965.1\|1985531_1986899_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041262348.1\|1986932_1988243_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_041262349.1\|1988342_1988615_+	hypothetical protein	NA	NA	NA	NA
WP_013886966.1\|1988776_1988992_-	transcriptional coactivator p15	NA	NA	NA	NA
WP_013886967.1\|1989008_1989356_-	hypothetical protein	NA	NA	NA	NA
WP_013886968.1\|1989348_1989858_-	SprT-like domain-containing protein	NA	NA	NA	NA
WP_013886969.1\|1990525_1990732_-	DUF2283 domain-containing protein	NA	NA	NA	NA
WP_013886970.1\|1990728_1990971_-	hypothetical protein	NA	NA	NA	NA
WP_013886972.1\|1991556_1991790_-	SHOCT domain-containing protein	NA	NA	NA	NA
WP_013886973.1\|1991857_1992271_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_013886974.1\|1992833_1993946_-	cytochrome c-552/DMSO reductase-like, heme-binding domain-containing protein	NA	NA	NA	NA
WP_013886975.1\|1994064_1994703_-	response regulator	W8CYM9	Bacillus_phage	3.8e-11	35.5
WP_013886976.1\|1994705_1996115_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_013886977.1\|1996176_1996860_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-31	38.6
WP_013886978.1\|1996881_1998030_-	ABC transporter permease	NA	NA	NA	NA
WP_013886979.1\|1998041_1999334_-	ABC transporter permease	NA	NA	NA	NA
WP_013886980.1\|1999345_2000614_-	DUF2318 domain-containing protein	NA	NA	NA	NA
WP_013886981.1\|2000883_2001429_-	iron transporter	NA	NA	NA	NA
WP_013886982.1\|2001466_2002669_-	FTR1 family iron permease	NA	NA	NA	NA
WP_013886983.1\|2003211_2003682_-	hypothetical protein	NA	NA	NA	NA
WP_013886984.1\|2003915_2005166_+	MFS transporter	NA	NA	NA	NA
WP_013886985.1\|2005540_2006032_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013886986.1\|2006223_2006664_+	host attachment protein	NA	NA	NA	NA
WP_052297450.1\|2007001_2007190_-	hypothetical protein	NA	NA	NA	NA
WP_052297451.1\|2007186_2007486_-	hypothetical protein	NA	NA	NA	NA
WP_013886987.1\|2007457_2007985_-	hypothetical protein	NA	NA	NA	NA
WP_013886988.1\|2008391_2009387_+	YhdH/YhfP family quinone oxidoreductase	NA	NA	NA	NA
WP_013886989.1\|2009388_2010015_+	anti-ECFsigma factor ChrR	NA	NA	NA	NA
WP_013886990.1\|2010314_2011208_-	EamA family transporter	NA	NA	NA	NA
WP_013886991.1\|2011681_2012116_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_013886992.1\|2012138_2014469_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	5.5e-185	45.0
WP_083816890.1\|2014497_2014902_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_013886994.1\|2014885_2015770_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.5e-66	47.6
WP_013886995.1\|2015877_2016666_-	AmmeMemoRadiSam system protein B	NA	NA	NA	NA
WP_013886996.1\|2016644_2017490_-	hypothetical protein	NA	NA	NA	NA
WP_013886997.1\|2017470_2018478_-	aminofutalosine synthase MqnE	A9ZMK9	Mamastrovirus	1.6e-16	38.7
WP_013886998.1\|2018474_2019881_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.4e-10	31.4
WP_013886999.1\|2020561_2021221_+	J domain-containing protein	A0A1V0SBY2	Catovirus	3.8e-06	46.8
WP_148255782.1\|2021771_2021963_-	hypothetical protein	NA	NA	NA	NA
WP_013887001.1\|2021959_2023180_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit F	NA	NA	NA	NA
WP_013887002.1\|2023192_2023804_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit E	NA	NA	NA	NA
WP_041262617.1\|2023809_2024406_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit D	NA	NA	NA	NA
WP_013887004.1\|2024420_2025206_-	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
WP_013887005.1\|2025195_2026395_-	NADH:ubiquinone reductase (Na(+)-transporting) subunit B	NA	NA	NA	NA
WP_013887006.1\|2026395_2027742_-	Na(+)-translocating NADH-quinone reductase subunit A	NA	NA	NA	NA
WP_013885239.1\|2028274_2029798_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_013885238.1\|2029784_2030471_+	ATP-binding protein	A0A1W6JP39	Morganella_phage	3.6e-07	27.7
WP_013885237.1\|2030637_2031903_-\|transposase	transposase	NA	NA	NA	NA
WP_013886071.1\|2032750_2033764_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013887007.1\|2034063_2035113_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	3.5e-14	23.4
WP_013887008.1\|2035364_2035778_+	CoA-binding protein	NA	NA	NA	NA
WP_013887009.1\|2036382_2037513_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	9.3e-61	35.9
WP_013887010.1\|2037505_2038498_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_083816913.1\|2038994_2039633_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.6e-54	53.3
WP_013887011.1\|2039873_2040923_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	3.5e-14	23.4
WP_013885906.1\|2041144_2042389_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.6e-48	39.1
WP_013887013.1\|2042473_2042629_-	hypothetical protein	NA	NA	NA	NA
WP_013887014.1\|2042621_2042933_-	hypothetical protein	NA	NA	NA	NA
WP_013887015.1\|2043191_2043839_+\|transposase	transposase	NA	NA	NA	NA
WP_013885349.1\|2043986_2045306_+\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_041262355.1\|2045547_2046615_+	glycosyl transferase	NA	NA	NA	NA
WP_041262356.1\|2046994_2047555_+	hypothetical protein	NA	NA	NA	NA
WP_013885895.1\|2047960_2049328_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_013885594.1\|2049599_2051435_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013886010.1\|2052596_2053409_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.5e-60	50.4
WP_013887017.1\|2053703_2055380_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_013885349.1\|2055604_2056924_-\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_041262358.1\|2057231_2057915_+	hypothetical protein	NA	NA	NA	NA
WP_013887018.1\|2058201_2059587_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_013887019.1\|2059606_2060902_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_041262622.1\|2060910_2062152_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	6.2e-26	25.9
WP_013887021.1\|2062174_2063329_-	amidohydrolase	NA	NA	NA	NA
WP_148255785.1\|2064108_2067486_+	methionine synthase	NA	NA	NA	NA
WP_013887023.1\|2067633_2068413_-	ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA	G9BWD6	Planktothrix_phage	2.3e-26	35.8
WP_013887024.1\|2068424_2069120_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA
WP_013887025.1\|2069119_2069797_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA
WP_013887026.1\|2069882_2070764_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA
WP_013887027.1\|2071140_2072388_-	DUF1015 domain-containing protein	NA	NA	NA	NA
WP_013887028.1\|2072401_2073601_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_013887029.1\|2073610_2074393_-	prepilin peptidase	NA	NA	NA	NA
WP_013887030.1\|2074508_2075327_-	UDP-2,3-diacylglucosamine diphosphatase LpxI	NA	NA	NA	NA
WP_013887031.1\|2075323_2076298_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013887032.1\|2076300_2077071_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_013887033.1\|2077067_2077502_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_013887034.1\|2077491_2078511_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_148255826.1\|2078513_2079011_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_013887036.1\|2079065_2081300_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_013887037.1\|2081304_2081928_-	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_013887038.1\|2081920_2083180_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_013887039.1\|2083167_2083998_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_013887040.1\|2084005_2085076_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	1.8e-05	41.1
WP_013887041.1\|2085068_2085977_-	DUF1385 domain-containing protein	A0A0K2CP67	Brevibacillus_phage	6.8e-06	31.1
WP_041262625.1\|2086163_2086871_-	FAD-dependent thymidylate synthase	Q684F8	Sulfolobus_virus	9.6e-40	43.1
WP_013887043.1\|2086913_2087144_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_013887044.1\|2087613_2088003_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_013887045.1\|2088014_2088440_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_013887046.1\|2088502_2088859_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_013887047.1\|2088855_2090160_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_13

2170080 : 2229680

Tupanvirus(37.5%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013887110.1\|2170080_2170956_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_013887111.1\|2170988_2172200_-	argininosuccinate synthase	NA	NA	NA	NA
WP_013887112.1\|2172426_2173551_-	amidohydrolase	NA	NA	NA	NA
WP_041262636.1\|2174274_2175615_+\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_013887114.1\|2175590_2177456_+	selenocysteine-specific translation elongation factor	A0A1V0SC62	Catovirus	1.2e-12	26.5
WP_052297453.1\|2177436_2178348_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_013885349.1\|2178426_2179746_+\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_041262368.1\|2179954_2180173_+	hypothetical protein	NA	NA	NA	NA
WP_013887115.1\|2180173_2180599_+	DUF494 family protein	NA	NA	NA	NA
WP_013887116.1\|2180650_2183077_+	type I DNA topoisomerase	A0A2K9L1Q2	Tupanvirus	1.5e-100	38.4
WP_013887117.1\|2183076_2184411_+\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_013887118.1\|2184385_2185282_+	tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	1.3e-33	32.0
WP_083816893.1\|2185501_2186530_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_013887120.1\|2186531_2187116_-	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_013887121.1\|2187209_2188517_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_013887122.1\|2188665_2189781_-	cyclopropane fatty acyl phospholipid synthase	A0A2K9L0U7	Tupanvirus	9.4e-82	44.0
WP_013887123.1\|2189979_2190330_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013887124.1\|2190314_2191076_+	arsenite methyltransferase	NA	NA	NA	NA
WP_013885895.1\|2191413_2192781_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041262640.1\|2193015_2193699_-	VTT domain-containing protein	NA	NA	NA	NA
WP_013887126.1\|2193823_2195230_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_041262369.1\|2195216_2195858_-	glycosyltransferase	NA	NA	NA	NA
WP_083816895.1\|2195854_2197372_-	DUF3641 domain-containing protein	NA	NA	NA	NA
WP_052297454.1\|2197476_2197836_-	radical SAM protein	NA	NA	NA	NA
WP_013887129.1\|2197832_2198528_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_013887130.1\|2198585_2199029_+	C-GCAxxG-C-C family protein	NA	NA	NA	NA
WP_013887131.1\|2199563_2200886_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_013887132.1\|2201107_2202184_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA
WP_013887133.1\|2202249_2202759_+	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_013887134.1\|2202748_2204071_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_013887135.1\|2204086_2205262_+	thiolase family protein	NA	NA	NA	NA
WP_013887136.1\|2205282_2206650_+	3-oxoacid CoA-transferase subunit B	NA	NA	NA	NA
WP_013887137.1\|2206652_2207411_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
WP_013887138.1\|2207653_2208937_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_013887139.1\|2209136_2210234_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	5.7e-47	34.8
WP_169310294.1\|2210254_2210869_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_083816914.1\|2210849_2212091_+	hypothetical protein	NA	NA	NA	NA
WP_013887142.1\|2212062_2212950_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_013887143.1\|2212915_2213509_+	HAD family hydrolase	NA	NA	NA	NA
WP_013887144.1\|2213505_2214420_-	ornithine carbamoyltransferase	M1IFC1	Paramecium_bursaria_Chlorella_virus	4.4e-29	31.7
WP_013887145.1\|2214420_2215587_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.4e-32	29.3
WP_013887146.1\|2215682_2216981_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_013887147.1\|2216977_2217394_+	hypothetical protein	NA	NA	NA	NA
WP_013887148.1\|2217415_2217982_-	AmmeMemoRadiSam system protein A	NA	NA	NA	NA
WP_013887149.1\|2218537_2218852_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_148255788.1\|2218882_2219830_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_013885349.1\|2220090_2221410_-\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_013887151.1\|2222439_2222682_-	hypothetical protein	NA	NA	NA	NA
WP_013887152.1\|2222840_2223428_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_013887153.1\|2224309_2224606_+	STAS domain-containing protein	NA	NA	NA	NA
WP_013887154.1\|2224609_2226031_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_013887155.1\|2226220_2227543_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	2.7e-43	28.3
WP_013887156.1\|2227556_2228084_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_013885349.1\|2228360_2229680_-\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

2418338 : 2496145

Staphylococcus_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013886841.1\|2418338_2419523_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_148255793.1\|2419850_2420261_-	hypothetical protein	NA	NA	NA	NA
WP_013887320.1\|2420399_2420783_-	hypothetical protein	NA	NA	NA	NA
WP_013887321.1\|2420775_2421348_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_013887322.1\|2421357_2423625_-	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	7.6e-38	24.8
WP_013887323.1\|2423635_2424169_-	molecular chaperone TorD family protein	NA	NA	NA	NA
WP_052297460.1\|2424281_2424956_-	PAS and helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013885239.1\|2425355_2426879_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_013885878.1\|2427367_2428687_-\|transposase	transposase	NA	NA	NA	NA
WP_013887328.1\|2432565_2432811_-	thioredoxin family protein	NA	NA	NA	NA
WP_013887329.1\|2432880_2434047_-	permease	NA	NA	NA	NA
WP_148255832.1\|2435575_2435989_-	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	1.7e-20	42.5
WP_013887331.1\|2436579_2437185_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_013887332.1\|2437361_2437892_-	N-acetyltransferase	NA	NA	NA	NA
WP_013887333.1\|2437961_2438420_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_169310295.1\|2438437_2439838_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_041262379.1\|2439942_2440233_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_083816904.1\|2442131_2443061_+	YbfB/YjiJ family MFS transporter	NA	NA	NA	NA
WP_148255794.1\|2443036_2443810_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_013887337.1\|2443802_2445050_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	1.5e-19	23.6
WP_013887338.1\|2445000_2445519_+	DNA damage-inducible protein DinB	NA	NA	NA	NA
WP_013887339.1\|2445751_2446666_+	EamA family transporter	NA	NA	NA	NA
WP_013887340.1\|2447001_2448789_+	PAS domain S-box protein	NA	NA	NA	NA
WP_013887341.1\|2448837_2449818_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_013887342.1\|2450280_2450493_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_041262382.1\|2450503_2450848_+	hypothetical protein	NA	NA	NA	NA
WP_148255795.1\|2451010_2452693_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_013887345.1\|2452804_2453029_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_013887346.1\|2453274_2453898_+	hypothetical protein	NA	NA	NA	NA
WP_013887347.1\|2454825_2455464_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_013887348.1\|2455465_2455663_-	DUF1858 domain-containing protein	NA	NA	NA	NA
WP_083816905.1\|2456312_2456486_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013887349.1\|2456564_2457884_-	hypothetical protein	NA	NA	NA	NA
WP_013887350.1\|2458283_2459648_-	membrane-bound lytic murein transglycosylase MltF	G0YQ82	Erwinia_phage	2.0e-09	33.1
WP_013887351.1\|2460202_2461216_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013887352.1\|2461750_2463430_+	AarF/ABC1/UbiB kinase family protein	E5ES62	Bathycoccus_sp._RCC1105_virus	7.3e-46	29.1
WP_013887353.1\|2463429_2465058_+	ribonuclease J	NA	NA	NA	NA
WP_013887354.1\|2465048_2465840_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_013887355.1\|2465830_2467975_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	5.1e-84	46.6
WP_013887356.1\|2467992_2468970_+	dihydroorotate dehydrogenase-like protein	NA	NA	NA	NA
WP_013887357.1\|2469262_2470294_+	dehypoxanthine futalosine cyclase	A9ZMK9	Mamastrovirus	5.4e-23	47.1
WP_169310296.1\|2470290_2470437_+	hypothetical protein	NA	NA	NA	NA
WP_013887358.1\|2470438_2473264_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	6.1e-303	55.4
WP_013887359.1\|2473244_2474960_+	N-acetylmuramoyl-L-alanine amidase	U5PWK4	Bacillus_virus	3.7e-21	38.3
WP_013887360.1\|2474959_2478376_+	hypothetical protein	NA	NA	NA	NA
WP_013887361.1\|2478344_2480888_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_013887362.1\|2481772_2482366_+	peroxiredoxin	NA	NA	NA	NA
WP_041262384.1\|2482591_2483413_-	hypothetical protein	NA	NA	NA	NA
WP_169310301.1\|2483467_2485093_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	6.1e-90	42.4
WP_013887365.1\|2485111_2485753_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_013887366.1\|2485760_2486561_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_041262385.1\|2486645_2488079_-	pyruvate kinase	NA	NA	NA	NA
WP_013887368.1\|2488395_2489205_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_013887369.1\|2489598_2490918_+\|transposase	IS1380-like element ISFsi1 family transposase	NA	NA	NA	NA
WP_013887370.1\|2491219_2492131_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_013887371.1\|2492127_2494710_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_052297462.1\|2494749_2494998_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_013886191.1\|2495095_2496145_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.0e-14	23.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015672

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection