CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_015694	Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence	1 crisprs	NA	1	1	0
NC_015704	Runella slithyformis DSM 19594 plasmid pRUNSL02, complete sequence	0 crisprs	NA	0	0	0
NC_015703	Runella slithyformis DSM 19594, complete sequence	13 crisprs	WYL,DEDDh,cas3,RT,csa3,Cas9_archaeal,cas6,cas10,csm3gr7,csx10gr5,csx1,cas5,cas8b6,cas7,cas4,cas1,cas2,PD-DExK	0	15	3
NC_015705	Runella slithyformis DSM 19594 plasmid pRUNSL04, complete sequence	0 crisprs	NA	0	0	0
NC_015695	Runella slithyformis DSM 19594 plasmid pRUNSL05, complete sequence	0 crisprs	NA	0	0	0
NC_015693	Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence	1 crisprs	NA	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015703_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_1

98193-98285

Orphan

Consensus_repeat	Method
CTGATTTCTTTCGGGTTTGAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_1

>merge|NC_015703|1|98193-98285|CRISPRCasFinder
CTGATTTCTTTCGGGTTTGAGAACCTAACGCTTGGGACGGTTTGCCGTTGGGTTTCTCAAACCCCAACGCCTCATTTCTTTCGGGTTTGAGAA

>NC_015703|1|1|98193-98285|CRISPRCasFinder
CTGATTTCTTTCGGGTTTGAGAA	CCTAACGCTTGGGACGGTTTGCCGTTGGGTTTCTCAAACCCCAACGC
CTCATTTCTTTCGGGTTTGAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013925854.1\|87180_88305_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340825
NC_015703.1\|WP_013925866.1\|102544_104026_+\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|271361
NC_015703.1\|WP_013925870.1\|108700_108985_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NC_015703.1\|WP_013925862.1\|98299_99064_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_015703.1\|WP_013925871.1\|109000_109897_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NC_015703.1\|WP_013925851.1\|82415_83570_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013925868.1\|105384_107805_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_015703.1\|WP_169704971.1\|83684_84875_-\|DUF5009-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NC_015703.1\|WP_013925859.1\|93853_95101_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|273178
NC_015703.1\|WP_013925869.1\|107922_108567_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_015703.1\|WP_013925850.1\|81449_82364_+\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NC_015703.1\|WP_013925858.1\|91936_93754_+\|glycoside-hydrolase-family-9-protein	unknown	unknown	gnl\|CDD\|376383
NC_015703.1\|WP_013925863.1\|99165_100596_+\|DUF5106-domain-containing-protein	unknown	unknown	gnl\|CDD\|239264
NC_015703.1\|WP_169704973.1\|88314_88866_-\|cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|224758
NC_015703.1\|WP_013925853.1\|85294_87115_-\|alpha-amylase	unknown	unknown	gnl\|CDD\|200487
NC_015703.1\|WP_013925856.1\|88953_89763_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|237766
NC_015703.1\|WP_041339825.1\|100615_102043_+\|DUF5106-domain-containing-protein	unknown	unknown	gnl\|CDD\|372801
NC_015703.1\|WP_041339829.1\|104231_105347_+\|DUF4249-domain-containing-protein	unknown	unknown	gnl\|CDD\|379442
NC_015703.1\|WP_013925865.1\|102157_102445_-\|ATP-dependent-Clp-protease-adaptor-ClpS	unknown	unknown	gnl\|CDD\|376861
NC_015703.1\|WP_013925857.1\|89852_91757_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013925854.1\|87180_88305_+\|glycosyltransferase	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	7.29259e-29
NC_015703.1\|WP_013925866.1\|102544_104026_+\|sodium:solute-symporter	gnl\|CDD\|271361	cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and Na(+)/multivitamin (SMVT) cotransporters, and related proteins; solute binding domain. NIS (product of the SLC5A5 gene) transports I-, and other anions including ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene) transports biotin, pantothenic acid and lipoate. This subfamily also includes SMCT1 and 2. SMCT1(the product of the SLC5A8 gene) is a high-affinity transporter of various monocarboxylates including lactate and pyruvate, short-chain fatty acids, ketone bodies, nicotinate and its structural analogs, pyroglutamate, benzoate and its derivatives, and iodide. SMCT2 (product of the SLC5A12 gene) is a low-affinity transporter for short-chain fatty acids, lactate, pyruvate, and nicotinate. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NC_015703.1\|WP_013925870.1\|108700_108985_+\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	9.52573e-27
NC_015703.1\|WP_013925862.1\|98299_99064_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	4.50731e-29
NC_015703.1\|WP_013925871.1\|109000_109897_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	3.94136e-76
NC_015703.1\|WP_013925868.1\|105384_107805_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.23456e-19
NC_015703.1\|WP_169704971.1\|83684_84875_-\|DUF5009-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	1.3042e-13
NC_015703.1\|WP_013925859.1\|93853_95101_+\|exonuclease-subunit-SbcD	gnl\|CDD\|273178	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD. All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely homologous to the MRE11 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.77879e-53
NC_015703.1\|WP_013925869.1\|107922_108567_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	5.87266e-34
NC_015703.1\|WP_013925850.1\|81449_82364_+\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	5.25675e-24
NC_015703.1\|WP_013925858.1\|91936_93754_+\|glycoside-hydrolase-family-9-protein	gnl\|CDD\|376383	pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9.	4.69508e-57
NC_015703.1\|WP_013925863.1\|99165_100596_+\|DUF5106-domain-containing-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	6.63152e-15
NC_015703.1\|WP_169704973.1\|88314_88866_-\|cytochrome-c-oxidase-subunit-3	gnl\|CDD\|224758	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion].	7.43892e-25
NC_015703.1\|WP_013925853.1\|85294_87115_-\|alpha-amylase	gnl\|CDD\|200487	cd11349, AmyAc_3, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_015703.1\|WP_013925856.1\|88953_89763_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|237766	PRK14609, PRK14609, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	2.41911e-154
NC_015703.1\|WP_041339825.1\|100615_102043_+\|DUF5106-domain-containing-protein	gnl\|CDD\|372801	pfam13905, Thioredoxin_8, Thioredoxin-like. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond.	3.20402e-17
NC_015703.1\|WP_041339829.1\|104231_105347_+\|DUF4249-domain-containing-protein	gnl\|CDD\|379442	pfam14054, DUF4249, Domain of unknown function (DUF4249). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 279 and 365 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	5.25052e-38
NC_015703.1\|WP_013925865.1\|102157_102445_-\|ATP-dependent-Clp-protease-adaptor-ClpS	gnl\|CDD\|376861	pfam02617, ClpS, ATP-dependent Clp protease adaptor protein ClpS. In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins.	1.34455e-18
NC_015703.1\|WP_013925857.1\|89852_91757_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0

>NC_015703.1|WP_013925859.1|93853_95101_+|exonuclease-subunit-SbcD
MKILHTADWHLGKRLEQFSRLDEQKEVLNEICEIAEREAVDAVIIAGDLFDNFNPSSEAMELLYSTLHRLSNFGSRAVVAIAGNHDSPERIDAPDALARVSGILFVGSPNAQIQPFETRSGLKVTKTDKGFVEFQLPHHATPLRLILTPYANEIRLKTYLGIEKSEESLRELLEKHWQHLADTYCDDQGVNLLVTHLYVMRREDENPPEEPDDERPILHIGGAQAIFTENFPAQMQYVALGHLHRYHSVSKVPCPIVYSSSPLAYSFAEANQTKYAIIIEAEAGRPAEYREVALTKGKKLLRARFEQIEEALEWLCGCQEALVQLTIVTDHFLESADKKRLTEAHLGLMPIIPEIRTKTTGNDTSGKVVELEGSSMEELFIDFFKNSKEGKGQAPNESLLGVFKEILSLDDDEKL
>NC_015703.1|WP_013925858.1|91936_93754_+|glycoside-hydrolase-family-9-protein
MNPAQNPGKNVFSLVAFLIIFGIVPGINAQNTAKTYIRYNQVGYLASDRKVALALSKEPLNGQFVLQNGTTKEVVFKAPLRLSQTTPWSPFAYYYELDFSGFQTPGTYQIRLENVEAPSGTFTIGRYPAYQEQLLFFMRQQRCGYNPYTDQVCHRGDGRTFFGPLKDSSYIDASGGWHDAGDQLKYLITSSNATARMLLAYEWAKDRFTDTVDDLGHARPNGIPDVLDEAKWGLDWIHKMHPAPDQLYHQVADDRDHRGFKWPHKDNADYGWGQNSYRPVYFADGKPQGAGKYKSEATGIANLAGRCAAAMAIAARIWKNDLKDPIFAEKCLKAAIELYALGKQKEGYQQGNSYSQPYRYTEDTWADDMEWGAAELYKLTKKETYRTDAKRYARLIGTTSWMEKDTAAHYQLYPYVNVGHYALYDIADAKTKAELADYYRHNLERVTNKGLKNPYGVGVPFIWCSNNLVTAFVTQAILYERMTGDKRYRAALMAHRDWLLGRNPWGTSMFTGIPAHGDFPLDVHLPFWLFTKKVIPGGLIDGPLWETIHGKMVGLTLSEPDEFAEFQPNHVKYMDDIGDYSTNEPTMDGTADAIFMFAFFAIPGK
>NC_015703.1|WP_013925857.1|89852_91757_-|phosphoglycerate-dehydrogenase
MLTNTLEQTYYVIDFDSTFTQVEGLDELANIALAGNPNREKVVQQIRDLTEIAMNGDMSFAEGLRRRIELLQANRNHIDALIEFLRAKISDSFLRNQAFLREYADSILILSSGFKEFIVPIVTELGLKEENVYANTFRFDADGNIIGVDEENVLSGDGGKVKLLQSLNLQGDVCAIGDGYTDYELRASGVANRFYAFTENVEREKVTKLADHIVPSLDEFLFLNNLPRSQSYPKSRIKILLLENVHPVARKAFEDEGFNVEFVKGALDEDELIEKIKDVTILGIRSKTMVTRRVLENAPRLIAIGAFCIGTNQIDLKTATDKGIAVFNAPYSNTRSVVELAVGEMIMLIRNVFPKSVGMHAGKWDKSANNSFEVRGKKLGLVGYGHIGTQLSVIGEALGMEVYFYDIVDKMPIGNAKKLKSLDELLQVADVLSLHIDGRKDNKNVIGKREFGLMKDGVVFLNLARGHVVDVEALVEALKSGKVGGAGLDVFPYEPKTNNEPFESELRGFPNVILTPHIGGSTEEAQEGIGHYVPERLLEYVNNGSTTGSVNVPEVQLPLLKGSHRLLHVHRNVPGILAKLNNIFARYNVNITGQYLKTNDQIGYVIMDVERSYVDGFVEEIKEMEETIKFRMLY
>NC_015703.1|WP_013925856.1|88953_89763_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MITFPNAKINIGLHITEKRSDGFHNLESCFYPVGWSDVLEVIPATEFSFSSSGIDIPGDPAKNLCVKAYELLKKDFSLPPLSMHLLKIVPIGAGMGGGSSDAAFTLSLLNQVYDLKLSTEALENYARTLGSDCAFFIQNKPVYCYEKGDRFADIPLSLQGKYIVLVYPNLHISTAEAYAGVKPQAPKVNLLEALQRPPAEWRHSIQNDFEKGLFEKYTVLPELKAKMYALGAEYAAMTGSGSTIYGIFEKEVDLQNNFNQYTVWKGELL
>NC_015703.1|WP_169704973.1|88314_88866_-|cytochrome-c-oxidase-subunit-3
MLWLGMGGSVLIFTILLAVYVMRKSAGVYWTDVPLPTLFWISTFAITTSSFTLHLANLSLKADRYPEFRRYIAATLFLGVLFVILQFLGWRQLILMGISTVNNPSAGFIYLFSGLHIFHILIGIGVLGWAVYQSLKNSTYIDAFVFSVNPPNQLKIRLITIYWHFVDVLWLYLFAFLLYHHGL
>NC_015703.1|WP_013925854.1|87180_88305_+|glycosyltransferase
MHKSHPHPRILLLSTVHSTSDPRIAGKIAPSLSPHFDVFTALSIHKEDDRRFLPNRHFIPLPYFRRLLWRLLLVHPVVLWKFLFIRPRIVHIFVAELLPLAFIFRWLGAEVIYEVQENLYKKLPLKSYNRSWVFEYLFRYFDHRARRLFKFVFTEDAYLNEYRNLQKPYAIVHNFAASEWLSRPFPVPDLRQPAFFYAGVISFERAFDTMMRALVIVKRRYPTVCLHLFGHLRISPKALKAHPAYPAIHDRLFFHGYVSQTGAFDYAGKALAGIALLKPVGDYADSYPTKLFDYMALGLPVITSDLPLLKAVVEPAQCGFCVSPYDADALADVMIACIEQPEPLRVMGENGRKAVKASYNWEKEAEKLVALYLK
>NC_015703.1|WP_013925853.1|85294_87115_-|alpha-amylase
MKTTIKALLWLVADLFVASVVAQPSPKLPPRMNSSQTDKIVLYQIYTRLFGNLNTTNKFYGTRDENGTGKFNDITDTALKELKKFGISHVWYTGVIEHATMTDYSAYGILKDNPYVVKGIAGSPYAIKDYYDVNPDLAVDVRHRMAEFEALVARSHKANLKVLIDFVPNHVARQYTSDVKPEGVKDFGEEDQRDQAFHPQNNFYYLPDRKFSVPDNVPVPPGIATVPYEEFPAKATGNDVFSAKPSINDWFETVKLNYGVDYLNHRRKHFNPIPNTWLKMRDILLYWAAKGVDGFRCDMAEMVPFEFWGWVIPEVKKVNPDLIFVAEIYNPAEYRNYLFNGKFDYLYDKVGLYDSLRRLMEGHGHTADITRVWQQESGDFANRMVRFLENHDEHRIASKYFAKNPFYAIPAMVVSATLHSGPLMLYFGQEVGVTPTVAEGFSGDDGRTTMFDYWGVPEYQAWVNGGKFDGGKLNEEQKKLRGFYADLLALVNGSDAVRNGAFYDLQYANNNGQRAGYNAAKHYAYLRHTDKQKLLIVCNFDLQNGMQTTVSIPAHAWETMGLSPTGKYSLKEIFHHPQTMTVEATTGVPVMMSENSVRIFEIKVPK
>NC_015703.1|WP_169704971.1|83684_84875_-|DUF5009-domain-containing-protein
MTLKRVPSIDAFRALTMLLMIFVNDFWSLSGIPYWLEHAKAEEDFLGFSDIIFPCFLFILGMAIPFAVQNRIAKGDTRWQIVRHIILRSVALIVMGIFTVNIPELNAQATGMRSEWFQILMVVGFFLIWNVYPKTDALQKYIFMGLQVAGVALLAYLALIFRGGEAEALTGMRPQWWGILGLIGWTYLTCALIYLFAYQNSTWLMLAGALFSLCTIAGHVGWPKAIWPSGPSDWILGNGAFHAFAMLGLLATLLMEWLYKKNKRTHVPSIFTSIGVSLVLIGLLLRNFFIISKIQATPTWVFLCSGIAFMLFAVIYFWVDLRGKAQWFTPIKAAGTATLTCYLIPYVYYSVANLLPFALPEVLKFGLIGLIKSLVYAFIVIGIATVLGRMNIKLKI
>NC_015703.1|WP_013925851.1|82415_83570_+|hypothetical-protein
MKSSFPFSLTALLVVTLCFIGCKTAKKAFKRGDYEESVLRAADKLRDSPTNSSAADILRQAYPLALQQNLDDVARYQNAPEAFHFEPVVDAYVRLNRLYDALRRCPACERLVTVRNFIPEEREAREKAATERYEAGMVSMRNKENRQMARQAYEHFESANALLGGFRNVQSMLDESYEYASFKVVVEQVSVTSRAYQLSNEYFQNKVNEFLQTNKRLNKFVRFYSPQEASSTRLRPDHVIKLEFDDFVVGQTLIQSNTDVVTSKDSVKVGETTVNGKKIAVYNKVTAKLTRTRKSVLSSGLLDMQVMDFRNKSVVTQEKFRGDFTWVCEWANFNGDERALTADQKRMCDVRELNPPPPQQLFIEFSKPIYDRLTSKIRDYYRNY
>NC_015703.1|WP_013925850.1|81449_82364_+|DUF58-domain-containing-protein
MSTRTLDVARVRQYGNLEFLARQLVEGFITGLHKSPFHGFSVEFAEHRLYNTGETTRHIDWKVYGKTDRLFVKRYEEETNLRCHLLIDTSSSMYYPEPNHDKITFSAMAAAGIANLLQRQKDAVSLCTFSDVIEIQTPIKSTPSHVHKIFLDLESILQKPKDLRKTAVADVLHLIAEKIHKRSLVVIFSDMFEDIHQTDRIFSAMQHLRHNLHEVLLFHVTDRRTEEEFAFDDRPYEFIDLESGEKVKVQPGQVKKHYQEAIKKYYHDLKLKCGQYKIDFIEADVAKGYDQILSAYLVKRNKMR
>NC_015703.1|WP_013925862.1|98299_99064_-|YdcF-family-protein
MFYFLSKTIDVLLMPLTMAFIAFLYVLLTKNRARSRKVLIGTLTALYLVSNPILVNELLKWWEPKSLNEEKKYEVAVILTGGIIKLYHAPTKHVFFGKSGDRAVQAFELYKRGKIKKIIISGGEGSLRGSKRNNSENNGIRQFLMESGVAADDIVQDSLALNTRQNAVNTAMILKTQFNTDKCMLITSAFHLPRAEGCFRKEGIMVMPCPSHYLQEDAVIWFDKLFPSEEALASFYLVWHEMIGYVVYKVVGYI
>NC_015703.1|WP_013925863.1|99165_100596_+|DUF5106-domain-containing-protein
MKFKRILLSSLVCLANAAIAQSAYRIEGQIKGLKGGSCILANYYAAQIYAKDTAQADNNGHFVFEGTKPLPGGVYEVVLPDRRTLYRVLIADDQDFSFAADTTDIVGSMKVKGSRDNELFYDFQRFMKGKEEEYQKLKAQKVADSDKRYKDIQDQRKAYYDSFMKANEGTFTVKLFKASAEPELPTAPKLPNGKTDSAWVFNYYKSHYWDNFDFGDVRMLQTPFLHQKLERYLKDLTVQTEDSLIKEADFIVNKAIKGTQKDILSYCIWYITNQYEMPKTVGTEGVFVHMGEKYYLTGIMPVSDSATIKNIAERIRILKPLLVNKIIPDLGVMSYRAPDKLEYIHASKADYEILFFYSPTCGHCRESAPKLKAFHDKMHAQGVDVLTIAIDGKEDEWRKFVKEFKLETLNNGFGLVASRQVVYRNDYDVLSTPTVYVLDKNKKIIARRLGVEDLEPFLNVYKKRLAMEPKPAGNRQ
>NC_015703.1|WP_041339825.1|100615_102043_+|DUF5106-domain-containing-protein
MRKLIFLTCFVLPYLSTIAQTGYSIKGTIKGLPAQSYTLAHYFGYSQYIVKDTAAADTGGSLVFTGNKPLPQGIYLLLSPAKRRIAEFVIGPEQHFSFSSDTVNVVANMKIEGSPDNELYYQYQQKIAGYNTEIGLLMAQMKMRQDLLMQTKINNLRRQVYEYYRTFAQENANSLTGKIMKAGADVELPAAPKRPDGKVDSAWLFHYYKAHFWDNVDFSDDRLVRTPALQRKLDRYLQEITFQDPDSLIHSSDFVIEKALKAGNKEMQSYCIWYLTNKAENPSIIGGEQVFVHLAEKYYLGGLMPVTDSGTVKNIRQKVNTLKPLLVGKPMPALSLTDTSGTLRSLADIKANYTVVVFYDPDCSHCRQSTPALKEFYEKNKKTLGVQIFAASVARAPEQWKKYIREFGLQEWIHGYDYSFRIDFRKEFDVVNTPMVYVLDQDKKIIARRIQSEQLDGFMDFYQQKLAYEKSLKIK
>NC_015703.1|WP_013925865.1|102157_102445_-|ATP-dependent-Clp-protease-adaptor-ClpS
MQLFEMPEIDVLEEIEEKVVETDLYSLVVFNDEVNTFDWVIDTLMEVCSHTPEQAEQCTIIIHYKGKCKVKNGSWEELVPLRQEICRRGISAEVL
>NC_015703.1|WP_013925866.1|102544_104026_+|sodium:solute-symporter
MSPYIALSILVVYFIVLIAVSIYTSRGADTNTFFTANKQSPWYLVAFAMIGTSLSGVTFISVPGAVGRIQFSYFQVVLGYILGYLFIGTVLMPLYYRLNLVSIYSYLEQRFGFWAYKTGSAFFLLSRTLGSAVRLYVAAQVLQLAMYNGLGIPFEVSVAITIALIWVYTFKGGIKTIIITDTLQTTFLVTAVALTIYLVANQLNYSFGGMVSAIADSEYSRVFFFDDPKDNKYFWKQFLSGAFIAITMTGMDQDLMQKNLTCKNIGEAQKNMFWFTITLTFVNLMFMSLGVLLYFYAQSKNIPIPAKTDDLYAMLALNHFGVHEGTAGVIVAITFLIGITAATYASSDSALTALTTAFCIDFMNVAKKPETERARIKHWVHIGFSVLFYIVIVLFNQMNSKEVITAIFDIAGYTYGPLLGLFAFGLYTKRPVNDRLTPFICIAGPVITYILNQNSEVWFDGYKIGFERLMLNGFIVFMGLLLISKPKKAASAG
>NC_015703.1|WP_041339829.1|104231_105347_+|DUF4249-domain-containing-protein
MNLRSKTILIVGLLLIGMCACVEPYDVTYRLNANVLSVDGFVSDQDGTTVSINIARNSGLSYYTEPLQKCTAEIRAGDGSITPLKETISGVYTAPGTFRGKIGQTYQLSFRTPDGKTYESSKELLTGTPEIKNISQQFNLNGLLDNIGKKVVASTVDIYLDFDDPKESKNYYLWRWKLYEEQSICITCVGGRLVGNQCVKINSRTPADYDYFCDKQCWDLIYNDNINILDDKFVSGKSVTGKLVAKIPFYHPSKGCLLEIEQLGLSQQAYQYFELLSSQSQTTGTLTDTPPAAIIGNVRNVNDSQDKVVGFFGAASTKKISYWIERDRYSNPIVKSLLGHPVNLEVSSFPPPSFPCVLSRDRTPIRPEGWK
>NC_015703.1|WP_013925868.1|105384_107805_+|TonB-dependent-receptor
MTLKHIFFLILLFGTGMTVSAQQRPKFQASRPNQLTGMVRDSITGEPITNAVVRINFDKIGLYTDTTGTFSVNLIEAEYVVIVNRIGYRPFRLRLKMNKNVHLDIKLMSVAEELEEVIISTQAVDENVSRPLLGVTQMNIKTIKKLPAIMGEVDVLRSLQMLPGVTSVGEASNGVNIRGGAVDQNLILLDDAPIFNPTHLFGLFSVFPPDAVSGMELYKGTTPARFGGRAAAVLDVSMSNPSLEKFSLQGGISFVANRLTAEVPLVKGKVGLLVTGRGAFNDFAFQWGPQKLKNIRASFGDAAAKLFWRINTKNTFSFSNYYSTDFFQTDLLGGITNINSTSTQYDYKTLNFTARWFHSFSDKLNVQTTGVYSRYRPRILLPEQDNDNKVTIGSEILQRQIKTNLNYSPNSRHKIEFGANMTHYQLQPGTLNPGSNQRVNPQTIPTENGIELALHAEDEVTLNSKTTFSVGLRYSYFMALGPGIVRIYAPGAPLTESTIVDSVLYGNGKVTKSYGGFEPRVGFRYNIDEQSSVKFGYNLMRQYLQVVSNTTTPLPTSRWKMSDAHIRPQVSQLWSAGYFRNFKSNIYELSVEGYYRATQNIMDFKPGADFLLQNFIETQVLQGKSMAYGAEFMVTKKKGEITGWINYTYSRVLNQVNEGPQFTEQINDGKWYPANFDRPHNVNMSFNYSENKYHNISLTFTYGTGRPYTVPNGFVSFQGKSYPYYAERNQGRIKDYHRLDFSWQINNPNLKNNRWTGSWIFTVYNLYGRKNQYSVFMRTQGTAYTTYQLQIFSSPVVSLAYNFKFM
>NC_015703.1|WP_013925869.1|107922_108567_+|YdcF-family-protein
MVSKETLALAQTLWDYHHVKHTLQKADCILVLGSHDLRVAERGAELYLQGWAPILIFSGGLGRLTQDLWKDAEADKFASIAMEMGVPKSAIYIENKSTNTGENIQFTQQLLKANDLTPETFIVVQKPYMERRSYATFKKHWPDKQLFITSPQLSLSDYPNEEIPLEEVIHIMVGDLQRIKVYPEKGFQIYQEIPDNVWQAYKQLVALGYNSHLV
>NC_015703.1|WP_013925870.1|108700_108985_+|N-acetyltransferase
MGQIKHSQTDTGGAFYYESDGQRLAAMTYVDSGKKTILIDHTEVNPSLQGQGIGKKLQAELVAYVRKNDIKVVPVCRFATATFRKMPEWQDVLS
>NC_015703.1|WP_013925871.1|109000_109897_+|pirin-family-protein
MSNISIIIEERPADIGNFLVGRLLPFRGKRMVGPFIFIDHMGPALLKEHQNVDVGPHPHIGLSTLTYLFEGTIMHRDTLGTAVEIFPNQVNWMTAGKGIVHSERTPEYLRHSDKRLHGLQIWVALPKELEDMPPAFYHAEADEIPTWHTDGVSCKLIAGEAFGRTSPVPVYSRLYLLEIKSSVTQTLRLGEELFGEAGLYILEGSIESEGHTYEPKRILVAKNSQLCEFTLHAGTTVYIFGGEPFPEERFIYWNFVATRQDIIEKAKQDWKEGRFARIEGERDPVPLPPEIPHLRPKK

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Crispr_ID: NC_015703_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_2

861649-861746

Orphan

Consensus_repeat	Method
GTAGGGGCAGGCCTTGCGTCTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_2

>merge|NC_015703|2|861649-861746|CRISPRCasFinder
GTAGGGGCAGGCCTTGCGTCTGCCCTCGCATCACGTCGAAGCATATTTTTAGGTTTATGTAAAATGAATATTACGTAGGGGCAGGCCTTGCGTCTACC

>NC_015703|2|2|861649-861746|CRISPRCasFinder
GTAGGGGCAGGCCTTGCGTCTGCC	CTCGCATCACGTCGAAGCATATTTTTAGGTTTATGTAAAATGAATATTAC
GTAGGGGCAGGCCTTGCGTCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013926481.1\|855917_857309_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|365848
NC_015703.1\|WP_013926484.1\|861860_862634_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|180371
NC_015703.1\|WP_013926478.1\|853807_854539_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013926474.1\|844865_845582_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293807
NC_015703.1\|WP_013926492.1\|868803_869310_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013926486.1\|864626_865199_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NC_015703.1\|WP_013926475.1\|845811_846498_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140
NC_015703.1\|WP_052308939.1\|866834_867533_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|274024
NC_015703.1\|WP_013926473.1\|842821_844738_+\|peptidase	unknown	unknown	gnl\|CDD\|349476
NC_015703.1\|WP_013926493.1\|869432_869792_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_169704562.1\|862805_863267_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013926482.1\|857536_858430_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NC_015703.1\|WP_013926476.1\|846571_848914_-\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|227116
NC_015703.1\|WP_013926488.1\|865523_866771_+\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|274452
NC_015703.1\|WP_013926491.1\|867750_868767_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290455
NC_015703.1\|WP_013926485.1\|863315_864503_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NC_015703.1\|WP_013926487.1\|865256_865493_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NC_015703.1\|WP_013926237.1\|858462_859809_-\|transposase	unknown	unknown	unknown
NC_015703.1\|WP_013926477.1\|848910_853686_-\|translocation/assembly-module-TamB-domain-containing-protein	unknown	unknown	gnl\|CDD\|367909
NC_015703.1\|WP_013926480.1\|854767_855751_-\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	unknown	unknown	gnl\|CDD\|237011

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013926481.1\|855917_857309_-\|cytochrome-P450	gnl\|CDD\|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	1.5331e-90
NC_015703.1\|WP_013926484.1\|861860_862634_-\|glucose-1-dehydrogenase	gnl\|CDD\|180371	PRK06057, PRK06057, short chain dehydrogenase; Provisional.	3.50122e-108
NC_015703.1\|WP_013926473.1\|842821_844738_+\|peptidase	gnl\|CDD\|349476	cd06905, M14-like, Peptidase M14-like domain; uncharacterized subfamily. A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	1.54868e-135
NC_015703.1\|WP_013926474.1\|844865_845582_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	2.01484e-32
NC_015703.1\|WP_013926486.1\|864626_865199_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	1.27944e-80
NC_015703.1\|WP_013926475.1\|845811_846498_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	7.53088e-131
NC_015703.1\|WP_052308939.1\|866834_867533_+\|ribonuclease-III	gnl\|CDD\|274024	TIGR02191, Ribonuclease_3, ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. [Transcription, RNA processing].	2.28751e-71
NC_015703.1\|WP_013926482.1\|857536_858430_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	2.78044e-32
NC_015703.1\|WP_013926476.1\|846571_848914_-\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|227116	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane].	3.81913e-22
NC_015703.1\|WP_013926488.1\|865523_866771_+\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|274452	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. 3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NC_015703.1\|WP_013926491.1\|867750_868767_+\|IS5-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	9.1277e-33
NC_015703.1\|WP_013926485.1\|863315_864503_-\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	1.43356e-161
NC_015703.1\|WP_013926487.1\|865256_865493_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	5.24348e-33
NC_015703.1\|WP_013926477.1\|848910_853686_-\|translocation/assembly-module-TamB-domain-containing-protein	gnl\|CDD\|367909	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex. TamB is an integral inner membrane protein that forms a complex - the translocation and assembly module or TAM - with the outer membrane protein, TamA. TAM is responsible for the efficient secretion of the adhesin protein Ag43 in E.coli K-12.	1.28112e-38
NC_015703.1\|WP_013926480.1\|854767_855751_-\|pyruvate-dehydrogenase-complex-E1-component-subunit-beta	gnl\|CDD\|237011	PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional.	0

>NC_015703.1|WP_013926237.1|858462_859809_-|transposase
MFRTILQNKDKNASKSRASDFILERGHRYLHPLQLRLDALIDTRLVSTFYDLFMAILVFRHNRMGLLLSELGGYICGLSHAPAGTKRISNLLRCKKWSSTLIDDFFFERSRERIKSLQSNGQRPLLLWDESKIEKSESWFLEGLCSVESSKGKRLTKIRKGFYKPPTQRICVPGFHWTATLLSALGQTPSVCQMSWWTSRGKYQEVGTNIIFRMLKKLHKTIGSSVLHVLDRGYANAWTIEWMNEFKQDFLVRWKKTHLLCHSEKGTKQTHLLARSFKAVGRKMLRDNQRKISKYVTIAYTQVTHADFKDKSLWLIIVRDKKSLQPPMYLLTSIAITNTRLAWEMCHSYMHRWNIEQTFRCSKAELGMESPRLWFWENRLKLLAIVALVYDFLLMLLRNWSHWIPLFLRHWCHRTGNRYRNASIPIYRLRLAISHVLYTACCACQTSG
>NC_015703.1|WP_013926482.1|857536_858430_+|OmpA-family-protein
MRKIILFSLSVLLFASCNKKQLAQLTKDKAELQALLDKNKADCDALSAKLKNDISDLTNQIKMKDGDITNERAKLKAMEDELAYLKRTNTNLLDRLSDLSIVSKDGAESIKKSLDALNRQSSYIQDLNSNLRRKDSLNLALVMNLKRSLDNVSDEDVNVEVKKGVVYISLSDKMLFKYGSYDITTQAENVLSKIAKVVNDRKDFDILVEGHTDSVPYSSASVLEDNWDLSAKRATSVVRALQKKYGVAPERMTAGGRGEYVPKVANDSSQNRSKNRRTEIVILPKLDQFFQLFDAGK
>NC_015703.1|WP_013926481.1|855917_857309_-|cytochrome-P450
MKYSKSGVSTIPQAKKNPFFGNTPDFVRNPLRFLEKMQKEFGHVGVVKLSLVNRDFFLVLTPEDTKHVLQENNRNYHKSEAYKVLAIFLGNGLLTSEGDFWRRQRKLTQPAFYKQRLALMVEMMNREVATAVEGWERKNGEEAFDTTEEMLNLTLKIVTRALFSTDVKHRLGGISESLNEIMHFADSTLKSFIRLPLTVPTPRNLRFKRAVAKVEAVIYSIIEGRREEIKQNAHVRYNDLLDMLIHTRDEETGETMTDQQVRDEVTTIFMAGHETTANALSWALYLLSKHRDVLHKLREEVKMVLGEEGMPTFETIRELKYTLQVVQEVMRLYPPAWVMGRKALGDDQLSGYSIAAGTYLLLPIYLLHRDPKYWQKPNEFYPDHFLPENIKARPTYSYIPFGGGPRMCVGNNFALMEMQIVLALWVRRLDFTLIDQKAMEADPLVTLRPKKSLKMYVKAFRQT
>NC_015703.1|WP_013926480.1|854767_855751_-|pyruvate-dehydrogenase-complex-E1-component-subunit-beta
MRQILFREALREALSEEMRRDASVFLMGEEVAEYNGAYKVSQGMLDEFGPERVIDTPIAELGFAGIGVGAGMNGLRPVIEFMTFNFSLVAIDQIINSAAKILSMSAGQYSCPIVFRGPTGNAGQLGAQHSQNFENWYANTPGLKVVVPANPYDAKGLLKASIRDNDPVIFMESELMYGDKGEVPEEEYIIPLGKAEVKKEGTDVTIVSFGKMIPRVVNPAIEELAKMGINAELVDLRTVRPIDYDTVINSVKKTNRCVVVEEAWPLSSIATELTYMIQRKAFDYLDAPVIRVNNMDVSLPYAPTLVEATLPNVKRTIDAVKAVMYRS
>NC_015703.1|WP_013926478.1|853807_854539_-|hypothetical-protein
MKRFIIIILLAVGGQAGIYAQTGTVTVDTIFTKFYQATGGKALWDGIQTYTIRQAYRAGTANDYDLVIQGSLPQQAMSKTRTIMKRDFIYGIKGNDGWIKIPIGSRDKVAQFQTSDLSGKERETMRRELVDLLAPFSNYSQKGYIATVVGTEQVNGKPAYQVEMEGKGVKYNLYFDMETGLMVREKLTLPTREVQTRDHAQYAKSAYGISYPSESTFVSSIDKKPVKVTTTLEVNSAIADIAR
>NC_015703.1|WP_013926477.1|848910_853686_-|translocation/assembly-module-TamB-domain-containing-protein
MRKVGKIVLLVFIGILLVLGTAIVWLQTGSGQDWLTRRVVSYLRQKLQTRVEVEHVRFQLPDWIELKNVYLEDKHRDTLLAGGRIFVDLDVWGLLQTKVGINEVQLENIYLNVHRTLPDTTFNFAFITQAFTNPDALPDTASTPMEMRLDAIKLKNVRLVYRDALIGTDANLWLSESNVNFSAFNPSYNRYHLTSTVLNTGKGSVRRYAPLRPDKPGADSVEVAVNPSDSLDLKLGTLQVKNFDIAYEDETQKLKTGGTIGQLDVESNFVYLNNLAVSLKRLAVQNTSLRFKTDSQAFDVSRFNTRLDDFVYTPARTAGKLKSASVVEKRGFVLRQLQTNFVYSATQTSLENLLIQTNETVLRNRAVLRYRSLEELSENIGNVNVDVNLQNSQLGFKDVLTWMPSLRNTPPFDRNPTAIVKVNGIVTGKVNNLTLKAVDVRTLQGTRLRMEGKIAGLPDPKKMAVDVKVSEFSTTKADIERIAPKDALPTSIELPAKIGLTGSVKGSLDNLTLNTRLASDVGDATFAGNLRNFVKGKNQGYQGTLVLKDFNAGKLLKQPPAQLGKLSLTATVDGKGIDPKTLEAELKGTVQRADVKGYTYQNLNLSGTYRQQQANFIAAIADPNATLRLTVQADLRPEYPVVSSEVDIDELRLKPLNLYTENIAIRGKITAAFASTNPEDPRGTLLIQNGVLIQDGKEIPLQNISATLQNENGERLAVIEAPFLKARATGVFRYEQLADIVLTEINRYFALPDIQYKPVTEPYRFALDGKVANHAVLKAFVPALTRMDTVQFSMQLNSLQDTTMRMQLRAPLVEYDSMVVARAHFFMAGANNKAIYSARVGQITSGTAIIKHTYLDGEIADNIVGFNLVLKDSVGQDRHGLEGMLASVDNNYRLQLRRRGLLLDYKNWTADSTGYVQFGKGGLLAKQFKIEQNRQRLFVNSLTETPNGPIRVEMDSLNLRPLVAIVADSMMVGGILAGNVVLQNYTQATPAFTGDFSIRGLTFMNILIGDLIAKADNKTADNIVAEATLKSPQNDVRLSGNYLLKSKAPLDLKLDIKKMGMQTVEAFSIGQLRRTRGSLTGQATIKGAIDKPQIDGSVGFDSVSFNVTQLGATYRINNSRLQFKGSDILLQKFVVSDTANRPLQIDGKINIAKIPEVSYDLNIAGKGFTVLNATRKENEFFYGKGIVDANLHVVGVGTKPAIDGSVKLKEGSDISIILPDDNLGGNATEGIVEFINPNKPTVAESDTVAAASVDYASEISLNLEIDDRSQLTIVVDELNGDNLKVRGNAQLNAGISPSGQVFILGLYELTQGSYDLTFEILKRGFSIQKGSRLIWTGDPMKADVDITAVYPVTAELTPLVPNSTNYKNKKLPLQVLLKMQGSLEKPQITFDIQADKTRLSADEVSKIENDGVFTELQQNQAAMNKQVFSLLVLNKFSGEQSSDFFSSVNPELIARESVSKLLTDQLNMLASDLIKGVKLDFNLNSTSVVTASGTAAQTDLNVGLSKAFLDDRLTVNVGRNFEIENGARASRSTEIIDNVNVNYNLTRDGRYAFRAYRKNQYQAVLEGFIVETGVSFALVLDYDKLNEMFKK
>NC_015703.1|WP_013926476.1|846571_848914_-|BamA/TamA-family-outer-membrane-protein
MTFRVSYIFPVLSSLLLTGCSVSRYLPANESLYIGAEVKMMPDSNVAAKVAKTVKAELEPILRPKPNKVILGFPYKVWMYYFLGEPKKEKSFKGWFRKKFGEPPVFASKRTVTTNSLVITGYLNNEGYFRSNAAGELMEKKRLAKAIYTVGLRKRYTIKSVEFVTKDTSVFSKNLKLTQKNTLLKEGQPYRLSVIEEERSRIERDLKKHGFYYFRPDYLIVKADTNLSNYQTNLSVELKPNTTQLALKTYFIQNIYVISDDGRLKKDTLAGITGRRGSIRVIDAAQAYRPRIFYDAIGFRRGTLYNSELHDVSLSRLINLKNFKFVKNQFELLPRSDSALLDVYYYLTPLKKKTLRAEISAVTKSNNLTGSQIGLTWLNRNLFRSAEQLRLNANVGLDVQLGGRSINKNVSNFYRTSFEAELSFPRFVLPFYRVRPERNQTLPKTTLTTGFERLTQQGLYTQTSVKLNWGYSWRKNTEIEHSFLPIALNVVQPSNISPALVDSIFSTNATLQDIQRYFRILENRLILGAQYNITYTPTPRPLSKNSFVMLGGIDIAGNIAGLFSKKGDNVREVFGVPYEQYARFDAEVRYYRNISPKLRWANRILTGVGIPYGNSLSLPQFKQYFAGGTNGIRAFRARTLGPGSYQQGPLTSSIFGNASFGDIRLEANSELRWRISQYFEGAMFADAGNIWMYRDFDDSFYPPEDNAVFTNEFYKQIAVGGGLGLRIVTPFVLLRFDLAVPFRKPWLPENERWVFNQFAPRSKPWRKENLVLNIAVGYSF
>NC_015703.1|WP_013926475.1|845811_846498_+|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MKFGVVVFPGSNCDDDTVYTLRVNLGQEVVKLWHKDHDLQGCDFVILPGGFSYGDYLRTGAIARFSPIMNEVIAHAQRGGYVMGICNGFQIVAEAGLVPGVLLRNSSQRYICRNIYLNPQSKSTILTGGLDRPAYKIPIAHGDGRYFADEDTLKSLNDNDRVLFRYCDENGLITEAANPNGSLENIAGVTNAGKNVFGMMPHPERASDPALGNADGRFILEQLLTVMA
>NC_015703.1|WP_013926474.1|844865_845582_-|MBL-fold-metallo-hydrolase
MQLLKNLFQVSGDFNGITFDRPGALWNDGNAYVLKTLQGLILFDTGCGDTLEQVFDNMRYWNLAPEEIQYCLLTHPHLEHAGGAHLLKKRGVKIMAVSETAEAIASGDERCCGFLYHKTFHPVIVDQVLADKQKRNLFGVEIEVMHLPGHSPGCTAYVFMWEQKKIVISGDVISTQPGGDFGWNSAIDFDQKMYINSLRRFAKLNFDILLPGHGMPYFHKPRQKVEEAFASALVHSRK
>NC_015703.1|WP_013926473.1|842821_844738_+|peptidase
MKYPLILLFSVLVLTEAAAQKPYYGEQKWPEQDTANKFYTVKGERHGVSFFKKHYFKEVQYQPGPKLAFDVYHSPDVMYHWYRKWAEQYPDIVDLYEVAKSYEGRPILQMTVTNKKTGKHTDKPAAYFEAGRHSGEVTSSEAVLWLTQHLLENYGKDPSITQLIDTKSIYLRPQNNPDGSTMYLFTAQRNRSTVHPKDDDRDGLLDEDPEEDLDGDGVIYQIRKKAVTKAEKEKADFVIDPKDPSGRLMKRVLEGKGEWLIYTEGIDNDGDGKYNEDGIGGLDNHRNYPENWRPDQGGDLTGRGYTQGGAGDYPLSEIETRSTVLWLLGHPNISVVNSMDTRVPMHLRPPSTSKSAESMFPADLAIYKHMDSLGLSFTGYPWAGDVYETYATRSKNDRTTGDPTKPQPLFGHGPDFGYFYYGSVWYGDELWNGGAMKDYDKDGAYDEYDGLMWDDEANKKNGFKPWTKFTHPVLGEVEIGGFHPKFFAQNGPAWQLENWISKQSKFNLAMAKELPQIDLKNVNVKALTNNEYEIKVTWSNSGKLPVALEQAKLVKIVQEDRVTLDVDKALLKGYEEAKVTITQPALFDKTIYTGYTKPGEQKEAVFKVKLNQKGSVKAKVKLSSTRGGYKEKEITIGN
>NC_015703.1|WP_013926484.1|861860_862634_-|glucose-1-dehydrogenase
MRLLNKVALITGGSSGIGRETALLFAQEGAAVVVADVNDTAGQETAQLILDQGGKAAYVRADVSKAADCENMVAFAEQTFGQLNIVFNNAGIMHSDDDNAVTTEESVWDLTMNINVKGVFFGCKYAIPALRRAGGGSIINTASFVALLGAATPQIAYTASKGAVLSMSRELAVIHARENIRVNALCPGPLRTELLMKFLNTEAKKQRRLVHVPMGRFGEAKEMAYAALFLASDESSYVTGTDFLVDGGIKAAYVTPE
>NC_015703.1|WP_169704562.1|862805_863267_-|hypothetical-protein
MKSRLLVMLLVSIGNVYAQTEPVKSPTPFAVSTQPFTFEGRQLIVGQAIGGLEKEYRLLEDGGVYRRMNTAKEFDVLGRQSPKNIEIAFNSLKDVKFDSLNFQHPGRTSYFIIYKKGKKEHKVVWGDAKHPAPEGAVRVYKAFMGMIPKEMRL
>NC_015703.1|WP_013926485.1|863315_864503_-|amidohydrolase
MLEKIKALSKGRAADAVANRRHLHMYPELSFQEVNTAQFVANRLKEMGLTPQEGVANTGVVALIEGRNPESRVVALRADMDALPIIEANDVPYKSQNLGVMHACGHDVHTSSLLGTAYILHALRDEFEGSIKLIFQPGEEKIPGGASLMIKEGVLQNPSPASILGQHVAPNIPVGKIGFREGMYMASTDELYLTVKGKGGHGAMPDTLIDPILIASHIIVGLQQVISRNRKPAAPSVLSFGKVIANGATNVIPNEVYIEGTFRCMDEEWREEGWKRITKMAQGIAEAMGGSCDVEVRKGYPFLKNHPELTRRTKAAAVAYMGAENVIDLDLWLAGEDFAFYSQVTDACFYRLGTRNEARGIVSGVHTPTFDIDEAALEIGPGLMAWLALEELKIQ
>NC_015703.1|WP_013926486.1|864626_865199_+|nicotinate-nucleotide-adenylyltransferase
MKIGLFFGSFNPIHIGHLIIADTMAAATDLEQVWFIVSPQNPFKKNKSLLHEFDRYDMVEKAIADNSKLKVNDVEFSMPKPSYTIDTLTKLQEKFPQHTFKLIIGEDNLGQFKNWKNYEAILQFYGLYVYPRPNASPHEFSDHPAVKFIPAPLLDISATYIRDCLRNNRSIRYMVPDVVEEMIKRKKFYI
>NC_015703.1|WP_013926487.1|865256_865493_+|acyl-carrier-protein
MSEIAEKVKKIIVDKLGVDESEVTEEASFTNDLGADSLDTVELIMEFEKEFNVSIPDDQAEHIGTVGQAIKYLEENVK
>NC_015703.1|WP_013926488.1|865523_866771_+|beta-ketoacyl-ACP-synthase-II
MILKRVVVTGMGALTPIGNTLSEYKEGLFSGTSGAGPITRFDASKFKTRFACEVKGLDMAQFIPRQEARKMDLFTQFAVVVGEEAVRDSGLDLEKVNLDRAGIIWGSGIGGLKTFEEEVLSFGNGDGTPRFNPFFIPKMIADSASGILSMRMGFRGPTYVTVSACASSNNAMIDAFNYIRLGKIDFCLTGGSEAAVTQAGVGGFNSLKALSERNDDYLTASRPYDKDRDGFVLGEGGAGLILEEYEHALARGARIYAEVIGGGMSSDAYHITAPHPDGIGAYMCMKNALEDAGISPEDIDYINTHGTSTPIGDPQEIKAIERLFGEHAYKLNISSTKSMIGHLLGGAGAVEAVASILAIQHQLIPPTINHFTDDPEFSTRLNLTFNKPQSRPVNIALSNTFGFGGHNTCVIFRKM
>NC_015703.1|WP_052308939.1|866834_867533_+|ribonuclease-III
MSPEKKFRKAVELIIGEKPSNMEVYQLAFRHTSASKETNIKGFRESNERLEFLGDSVLGMVIAEYLFKKFPYKDEGFLTEIRSRIVNRETLNGIARKIGLDRLIEFDGNRKGMPPNSSMYGDALEALVGAVYLDKGFRFTRKFITKELLTHYDLDALINNNANFKSRLIEWAQREGKEVRFMIVEEKGSRHFREFISQVILSGEVFAQGSGYSKKKAEQSAAEKACEQLELK
>NC_015703.1|WP_013926491.1|867750_868767_+|IS5-family-transposase
MPKIHFFTQAENLPPKAQRNPPIPKEKYRLTNWPEYNKALINRGFVTLWLNEKTLTQWYYQGPRTRGGLLRYSDQCIQAALALKAAFRLAFRQTQGLIQSLLAIMKIDIQVPSYSQLCRRQAHLQAFHTPQKPTDNQVKPIHLVVDSTGLKVYGEGEWKVRKHGADKRRTWRKLHLVADEATNTIHAVELTTHSISDAEMIKPLLADIEWPIAKLRADGAYDQVKVFDELEKHWIQPVIPPRSNAVIWTSENGNDLIHPRNEAVRQIRLVGIAAWKQQIGYHRRSKAETAMFRWKMIFGERLSARLVTNQQTEAQIKATCLNRFTRLGMPKTVKRLPT
>NC_015703.1|WP_013926492.1|868803_869310_+|hypothetical-protein
MKTIVFSITFSFFFLLQGLAQKKTMIAYFPREVSIKDSITISLIDNYIQKVQDKKVVHLSIAATQDTIFYRLEAIATIETITEHIKPFFIFQYKGYYFLVDNGLGRMVQGNDLFAQYITKKLKKYLVRGETIKDAGNGVKDVTFIIYEAPVMFATYSRGGVKVRWDGL
>NC_015703.1|WP_013926493.1|869432_869792_+|hypothetical-protein
MKALTKFLISISVLTIIGTLLIYRLWLGYWPPRTPAKIVQKALGVSFINLGIKKYYEQWLPNGDGTLLVIVKTDSASVATILSESKLTFRQLDITNNNEIKMLVKTKLGSIQAGQYYFK

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Crispr_ID: NC_015703_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_3

2261839-2261924

Orphan

Consensus_repeat	Method
ATATTTCGCGGTTATCGGGCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_3

>merge|NC_015703|3|2261839-2261924|CRISPRCasFinder
ATATTTCGCGGTTATCGGGCGGAGGTAAACCCCGCCCCTACGAATCCGCCAATTTGCGGTCAAATGTTTCGCGGTTATCGGGCGGA

>NC_015703|3|3|2261839-2261924|CRISPRCasFinder
ATATTTCGCGGTTATCGGGCGGA	GGTAAACCCCGCCCCTACGAATCCGCCAATTTGCGGTCAA
ATGTTTCGCGGTTATCGGGCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_169704648.1\|2261975_2262161_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013927697.1\|2265655_2268040_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_015703.1\|WP_169704650.1\|2262192_2262900_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_052308955.1\|2257668_2260053_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_015703.1\|WP_013927689.1\|2254882_2256127_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013927702.1\|2273851_2274529_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_015703.1\|WP_013927690.1\|2256354_2256771_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013927686.1\|2250477_2253045_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379720
NC_015703.1\|WP_013927699.1\|2270957_2271392_+\|DNA-mismatch-endonuclease-Vsr	unknown	unknown	gnl\|CDD\|226250
NC_015703.1\|WP_013927687.1\|2253240_2253954_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319986
NC_015703.1\|WP_013927696.1\|2263117_2265523_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_015703.1\|WP_013927685.1\|2248075_2250193_+\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NC_015703.1\|WP_013927698.1\|2268138_2270541_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_015703.1\|WP_013927693.1\|2260343_2260676_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|163261
NC_015703.1\|WP_013927700.1\|2271406_2273764_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NC_015703.1\|WP_013927688.1\|2254103_2254490_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_041340508.1\|2274616_2274979_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_015703.1\|WP_041342695.1\|2275041_2276292_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_015703.1\|WP_013927694.1\|2260944_2261793_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NC_015703.1\|WP_169705061.1\|2256942_2257539_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013927697.1\|2265655_2268040_-\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	1.09231e-61
NC_015703.1\|WP_052308955.1\|2257668_2260053_-\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	2.70019e-62
NC_015703.1\|WP_013927702.1\|2273851_2274529_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	8.47879e-112
NC_015703.1\|WP_013927686.1\|2250477_2253045_+\|TonB-dependent-receptor	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	1.64695e-96
NC_015703.1\|WP_013927699.1\|2270957_2271392_+\|DNA-mismatch-endonuclease-Vsr	gnl\|CDD\|226250	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair].	7.45851e-56
NC_015703.1\|WP_013927687.1\|2253240_2253954_+\|hypothetical-protein	gnl\|CDD\|319986	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB. This family contains uncharacterized proteins similar to the periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB, all of which have similar unclosed beta-barrel structures that resemble a baseball glove-like scaffold consisting of an 11-stranded antiparallel sheet. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts outer membrane (OM)-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. It is proposed that the LolA/LolB complex forms a tunnel-like structure, where the hydrophobic insides of LolA and LolB are connected, which enables lipoproteins to transfer from LolA to LolB. RseB exerts a crucial role in modulating the stability of RseA, the transmembrane anti-sigma-factor that is degraded during sigma-E-dependent transcription caused by bacterial envelope stress. Its structural similarity to LolA and LolB suggests that RseA may act as a sensor of periplasmic stress with a dual functionality, detecting mislocalized lipoproteins as well as propagating the signal to induce the sigma-E-response.	3.62012e-07
NC_015703.1\|WP_013927696.1\|2263117_2265523_-\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	2.67467e-63
NC_015703.1\|WP_013927685.1\|2248075_2250193_+\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NC_015703.1\|WP_013927698.1\|2268138_2270541_-\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	2.72755e-55
NC_015703.1\|WP_013927693.1\|2260343_2260676_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|163261	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein [Regulatory functions, DNA interactions].	6.05567e-05
NC_015703.1\|WP_169705061.1\|2256942_2257539_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.93629e-24
NC_015703.1\|WP_041340508.1\|2274616_2274979_+\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	1.60975e-42
NC_015703.1\|WP_041342695.1\|2275041_2276292_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.06438e-34
NC_015703.1\|WP_013927694.1\|2260944_2261793_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	5.4462e-22
NC_015703.1\|WP_013927700.1\|2271406_2273764_-\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	3.60441e-71

>NC_015703.1|WP_013927694.1|2260944_2261793_+|sugar-phosphate-isomerase/epimerase
MKHIKQYLLCGLLLSLGALSVQAQKTPEDKAGWKLGSQAYSFRLFSFADALRKIDSCGLKYVEAFPGQTIGGGIEGKMDFTMDAATRTAVKKLVKDKGLTIVAYGVVNPKTDAEWATLFEFAKDMGVLNINTEPSPAQMPLVRKLAEQYKINVALHNHPKPSRYWHPDTVLAAIGGSKYVGSCSDIGHWVRSGLDPVECLKKLNGHVLGMHFKDVKKDTPEGRYHDVVWSTGDCKVAEVIAEMKRQNFKGPISVEYEYHWENNGPEIAESVKNFRQIYSRTK
>NC_015703.1|WP_013927693.1|2260343_2260676_-|helix-turn-helix-transcriptional-regulator
MKRTYLGEFEEIVLLTVAVLNGQAYGVVLMHEIIERTGRSVRLNQVHSALQRLEEKGMVRSEMGEATNERGGRRKRLFSVTAYGHRTLQEIQEVRLSFWQRLAHPLKFSV
>NC_015703.1|WP_052308955.1|2257668_2260053_-|ABC-transporter-permease
MLQNYFKIAIRNLLKHRTFSLINITGLAVGLVCCLAIGLYVWDEYQYDRAVPQFERIYRITERQKQATGLYNTAVTPGPLAPALKNDFPEITETVRIGAWSGLLLYGQTAVEPEAMRVVDPSFLPFFGIKLLQGDPRTVLSSPDEVVISEAVAERFFGKNWRMQSLPGKTLQYGNDRLLRLTGIVENTPARSHLNYDVLLPFKYFELNDKWSYNWSSNNYHTYLKIRPDANVTAFAQKLAGQLKKYDNGNETPLLLQPLQDIHLHSDFDFGTDWGKHGNIRYVRIFIVVGLIVLLIALFNFINLSTARATQRAREVGVRKSVGALRSSLIAQFWGESLLMTSLALGIGLVLLHSLMPFFNDLSGKVMTLPFQEPLFWASMVGVLLFISFLTGWYPAFYLSSFRPVSVLKGIFDKKSGADFRKILVVTQFVMSIILIIGTVGLYQQLQFMQNKNLGFDKEQLLYVRLKGDVREKALLLKDLLTNQSSIASVTATTSTLVNMQNTSYIEWAGKTPKNEFLITQMNVDADFLKTTGMTLAAGRNFSAAVASDTSNKYGTYLLNETAARRMGWTPQQALGKKVNFWGLDGEIVGVLRDFHFRPMSVKIEPFIVRFRPKERYFNLLVKTRPNQTQRALADIARSYKKLEPDQPFSYGFVHQDLERQYAVEQRIGQLLLSFSILAIVIACLGLFGLVTFTAEQRIKEIGIRKVMGASVANITGLLSKDFIKLVLIANGIAFPLAYYGLNHWLQDFEYRIGIEWWIFAVAGVSAIGISLLTVSFQAIKAALMNPAKSLKTE
>NC_015703.1|WP_169705061.1|2256942_2257539_-|class-I-SAM-dependent-methyltransferase
MVQEGYDRLGSRYRTHYEKSDPERYRHWLNELTKRLPARANVLELGCADGIPTARILSQHFVYRGIDLSPVQIKQARRNVPKAHFEVADMTALTFPEAAFEAVIALYSIIHVPLAEQPALINAVYRWLRPDGCFLCVVGDCEWTGTEPDWIEPGLRMYWSHTDADTYQSWFIETGFTVIERHFAAEGATGHTFFFLQK
>NC_015703.1|WP_013927690.1|2256354_2256771_+|hypothetical-protein
MKTIILSCLFVFGVSISLISQNRTTKIYFFSLPSSKLVTTSNPEDPIKINKCTLLETNLDSLGLELLSEKKVYLPLEAGRTYYYHKILTNGSGIGTAIVSECTEKEFWLNVYYVGAGTYRHYFLDKQSGLKLLEEKSR
>NC_015703.1|WP_013927689.1|2254882_2256127_+|hypothetical-protein
MKDQILIHLNDPGQLEKLYRTNKGSFKREFRTLYPELKGNLLADFWNERLNYESEELSRTTGGDWVFVIIASLAAGCIAKLPALFSINEEFFYPRNIGFIVFPALMAYFARKNNVSTGKIAFLVGASLFGAIYINALPDVTTSDTLILSCIHLLLFLWALVGFAFVGETKTNDEKRLGYLKYNGDLVVMTTLILIAGGIMTGITIGLFKLIGLNIEKFYFENIVVFGLSAAPIVGTYLTRSNPQLVSKVSPVIAKIFSPLVLVMLVIYLVAIIYAGKDLYNDREFLLIFNALLIGVMAIIFFSVAETSKTTKSQAEIWILFLLSVVTVIVNGIALSAILFRISEWGITPNRAAVLGGNVLILINLLLVTVQLYRVVSKKGGPAGVGRTMAAYLPVYVAWTLIVTFLFPVLFGFK
>NC_015703.1|WP_013927688.1|2254103_2254490_-|hypothetical-protein
MKKSILAIAAFALLSTVTVNAQRGHDPGQRPAQAPPYDHPRRDNAREELIINRLDNIVELTRKQENELKRIENRYDRLLKGRRLSGRDIQRLENEKQQEIWSVLTPVQHQRLAAHLHSRKFERPYRRG
>NC_015703.1|WP_013927687.1|2253240_2253954_+|hypothetical-protein
MKTNKLLVATLVALVSIGSYAQTVDEIVDKHVAAIGGMDKLKGVNNLVIERTLSVQNMEIPSKTTVIVGKAMRSESSIMGNSMVQVVDGTTGWMIRPAMMGGTGDPEDMPAEMVKQQLGQLDPFGPLVNYKEKGNKVELVGKEKVEKDDAYHLKVTTKDGQTMDEYIDAKTYMLTKLKTTIQGQEGEITFSDYKDFEGIKIANTMDMTSQMGSITMITNKVTVNAKVDDSVFKKPTK
>NC_015703.1|WP_013927686.1|2250477_2253045_+|TonB-dependent-receptor
MKKIYFLLAITLLATTFLMPAQAQFPMGGVAPVKALPGTAGDQTPKGSAKITGFVVDSSVTKAVEFANIALYNKATGKAVDGTVADEKGKFVLNKIAEGEYRLLISFLGFKNKTIENITLTKGQDLDLGVIKLSANVQTLNEVVVTGQAALIEEKVDRLVYNADKDIAAKGGDATDVLRKVPLLTVDLDGNVSLRGSQNIRVLINNKPSTIIASSVSDALKQIPADQIKTVEVITSPSAKYDAEGSGGIINIITKKNSLQGMNLNVDSGVGNRGSSLSLNGSYRKGKAGFTLGGFGRANYNTITKTSLEQTSIANGITTQTRQTGDGNSRGLFGQYNLGFDYDLAKNQSITAGLRYGVRNFISQQDLVTRLYTNGVAGVASGRDVEAKNLSGTIDINVDYLHTYKKPQQEWSMSTLYSRNGLTNDFDANLLNGDGGLKSRQRNLNSNVNQEFTFQTDYQTPIKKNQLLEFGGKGIFREVTSNYRYLMAGPTGEFTKEINQPSGELIYHQNIAAGYSSYTYTTKKRYTLKGGLRYEHTFIDASTREGGPIGIANYGVLVPSVNASKTIKGTTLKLGYNRRIQRPGLQQLNPNFNAANPQNITIGNPSLRPELTNNFELGLSKTIKKVFVNATFFGRVTNNAISQVRRPSDTLAGAIITTYENIGRQHAYGTNIFANIAVTSKINVGLFSNVFYTTLSGQAIGENGVSQNLTNDGFNVSGGLFSQAQFKNGWGAQAFGFLQGSQVQLQGVQGGFGFYTVGIKKDFKNKKGSIGLAGENFLSKRFNIHTELKSPQFNQVNDVYLYNRGVRLTFTYKIGKMTMDAPKKKARSVNNDDVKTEGGGQAAPGAAPGAGTPRQ
>NC_015703.1|WP_013927685.1|2248075_2250193_+|M3-family-metallopeptidase
MKQTFRVPVLAIYLTALVSMDAASQNPFFSTYTTPFGVPPFDQIKNEHFEPAFIEGMNRQAAEIAAITAQKEAPTFANTILALENSGDLMDRVGTVFFNFNNANTNDGLQKIAQTLSPKLSKHRDDIQLNAELFKRVKAVYDQRNSLKLTGEQKMLLEKTYKSFVRSGAALSAEKQERMRKINAEMSLLTLKFGQNLLAENNNYTLVIEKAEDLSGLPASLIAAAADDAKKRKMEGKWVFTLQNPSIMPFLQYADNRALREKIFKAYLERGNHNDAYDNKALMTNIVALRAEKAALLGYENHAAYVLEESMAQTPAKVSALLNQLWTATVPVTKQEAAELQTMMDKDGRNEKLEGWDWRYYAEKLRKQKYDLKEEELRPYFALDNVRQGIFTLCQRLYGLKFEPRADIPVYHEEVMAYEVKEANGQPVGVMYMDFHPRASKRGGAWMTSYRKQELQNGKRIAPVVSIVCNFSRPTGGAPALLSMDEVHTFFHEFGHALHGLLSNVTYGSLSGTSVPRDFVELPSQIMENWSTEPEMMKLYAKHYQTGEVIPEALIEKMKKSSLFNQGFETSEYLAASLLDMSYHTLRPGQTPTDVLTFEKEAMDKIGLISQIPPRYRTTYFQHIFSGGYSAGYYSYIWSAVLDADAFEVFKQKGLFDQKSAQSFRKNVLEKGGTDEPMKLYLNFRGAEPDIKPLLRRRGLLKEVN
>NC_015703.1|WP_169704648.1|2261975_2262161_-|hypothetical-protein
MSPSIALVILIASPLASYCMNQWLGDFAYHTDVEWWMIALAETLATTITLTTVSFRVLKQR
>NC_015703.1|WP_169704650.1|2262192_2262900_-|hypothetical-protein
MLGKAPILSQIKTNGKLQTEFIYNAENKLIEIRKYFDDGTNIWESRRYEYNKDKVVKSEFWSSHPLYLSSWPAPGKPLTLQSVTVYEYSSSQNQPAKELNYAADGKQLLSYTVHAYTLTGRKIKSQTFAAEGRETFTQTYEYDSRGNLSNWATSYWEYDTHANPLQNLQVPYSDPSWVSPNNATENFGKDANGKKTNVWRYEYTYTGWDFPLTMKTFIGGKLMGQSEFSYREWVR
>NC_015703.1|WP_013927696.1|2263117_2265523_-|ABC-transporter-permease
MFRNYLIITLRTLAHNKVYSAINVIGLSIGLAAAMLIMLYTKDEVSYDQFHANNPHIYRITSKSITPEGVERPDGNTGHFQGPKFSAGVPEIRSFVRYKADRRDIKKGTEIKSYESFVADSSFFSIFSFPLKSGNPTMALKDPQSVVISEKMAEQHFGTTDALGKTLFVKDSFGDGSQFGPYTVTGITKNCPQNSSIKFDVLFPNVVSKEEIESNENWFNIFQNTFVVLQPNADLKKVEATMNRIYLADAKESIKRMAEKYGEKNKVVYALQPFTDMHLSKELPAQNGLQDSSNPMFSYILSGIALFILLIACINFVNLTVARSLKRAKEIGVRKVVGGGRVQLILQFLGESFMLCFAAFTLSLALVQLTLPIFNDLSNKALSFTYLLDFTLIMGFVGLFIITGLLAGFYPALVLSNYSPVQTLYSRFKLSGKNYLQKGLVIIQFSLASFLIIATLTIYSQFNYLTHKDLGYNDKNIITIDKSRMSRNEAKLLKEELLKHPAIVDAAPKNGGSWGTVAKVNGETQQNFAYETVDATYFPMLQIPIIKGRNFSPDFPSDSTKAVLVNETFVKKAGWKKPLGQTVDFWYNEGEKYTVIGVVKDHHFESLNAEIQPQLFTMKPGNLYGKVFLKIKPGTETAALGHLEKTYKKLFPISPYEYKFMDEENIKRYEAEAKWKQIMLFGAILTIFISCIGLFGLATLSAERRTKEIGIRKVLGASVASITALLSGDFLKLVSFSFIFAFPAAYYAIKEWLQNYPYRIDISAWTFVIAAALSILIAFFTVSFQSVRAAMSNPVKSLKSE
>NC_015703.1|WP_013927697.1|2265655_2268040_-|ABC-transporter-permease
MLRNYFKIAFRNLVKNKVYSFLNIAGLSAGMAVAILIGLWMWDEVSFNKYHQNYDRIVQVMQHVTNNGEVQTWPNTPLPLAEELRKSYGSDFRYVTVSQEAYCILSYGEKKFSKKGAYFEPQITEMLTLKMLKGTRDGLKTPNAVLLSESVAKTFFGEADPLDKILKIDNRTDVKVTGVYEDLPRNSDFHDLTFIAPWQLYYTTNEWVRTMPDPWRPNAFHIYAQLIPKADVAAVSHKIKDAKLNRVSKELARKKPEVFLHPMSQWHLYSEFKNGVNVGGRIQYVWLFGISGLFVLLLACINFMNLSTARSEKRAKEVGVRKAVGSLRAQIVYQFFVEALLMVLFSFALALLLAQLILPFFNSLADKTVSIPWENPWCWAIGLGFSVLCGLVAGSYPALYLSSFQPIKILKGSGFKAGRWAATPRKALVVIQFTVSVTLIIGTVIVFRQIQFAQNRPMGYDSNGLVVLPMYTSEIHTHFDAVKSELTQSGAITEIAEAGSPPTENWSSTSTIEWKDKDPNLSIDFQVITVSFDYGKTIGWSIREGRDFSKKFSTDSSGLILNEAAATFMGLTNPIGETIKWYGAPYKVIGVVKDMIIQSPYQQIKPTIYHLTTEPGGVMIVKINPLAGAQEALSKTETVFRKFNPAQPFEYQFVNEEYAKKFDNEKRIGQLATFFAILAIFISCLGIFGLASFMAEQRTKEIGIRKVLGASVANLWQMLSKEFVILVLISCVISAPISYSFLQEWLRKYTYRTELSWWIFVAAGVGALCITLLTVSYQSIKAALMNPVKSLRNE
>NC_015703.1|WP_013927698.1|2268138_2270541_-|ABC-transporter-permease
MLRNYFKIALRNLAKHKVYSFINIGGLAIGMAVAMLIGLWIYDELSYDRYHQHYDRLAQVMQHQTFNGHKGTEHSIPMPLVNELRTKYGSDFKHLAMATWEGDRILTYGEKKITRSGNYMDVDIPEMLSLKMQKGTHAGLNELNSVLLSESTAKALFGNADPMGKFIKIDNKLDVKVSGVYEDLPFNTRFRELNFIAPWKLYVSSEKWVQRALDENQWGNNSFQLFAQIADKAEMDKLSAKIKNVKWDKVDAEEKKFKAEIFLHPMSDWHLRSNWEEGVKTGGFIQYIWLFAIVGGFVLLLACINFMNLSTARSEKRAKEVGIRKAVGSVRAQLINQFFSESFLVVTFAYVGAVVFILALLPWFNEVCDKKMVFPWTEPAFWLISLGFICLTGLLAGSYPALYLSSFQPIRVLKGTFKAGRFASVPRKVLVVIQFTVSVTLITGTIIVYRQIQHTKDRPMGYTNDGLISMQMMSPEFYGKYDVVRTELKNQGAIVEMTESSSPLTGVWSNNGGFDWKGKDPSLQAEFATIWVTHDFGKTVGWQFKEGRDFSRQFSTDTAAIVINEAAVKFMGVKNPVGTVVQWGQGKGAESFTIVGVIKDMLMESPYEPVKQTIYFMDYENVNWMTLKLNPTKSASESIAKIEATYKKLIPSAPFSYKFVNEEFGKKFVSEERIGKLAGGFAILAVLISCLGLFGLASFTAEQRTKEIGVRKVLGASVFNLWGLLSKDFVVLVIISCCIATPIAYYYLNDWLQDYKYHTDISWWVFALAGVGALIITLVTVSYQSIKAALMNPVKSLKTE
>NC_015703.1|WP_013927699.1|2270957_2271392_+|DNA-mismatch-endonuclease-Vsr
MADKHTPQQRSYNMSQVKSKNTKPELMVRKFLFSQGFRYRLHDKKLPGKPDMVLPKYKTVIFVHGCFFHGHEGCKYATIPQTRTEWWQEKINGNRRRDGENEARLSALGWRIITLYECELKPAQREQTLQRLGFRVADRSEALR
>NC_015703.1|WP_013927700.1|2271406_2273764_-|ABC-transporter-permease
MFTNYLTIAFRNLWKNKVYSFINIMGLALGMACSLMIMLWVQDEVAMDAFHENGPRLYRVMENQFYSGKIETYASTPGILAENIVKDIPEIEKASQMLWEEQPLFRVVNTFDKEKGRYVQGDFLTMFSFKLEQGDARTALKQPEGVVISKKLAQKYFPNQNPLGKSIRIDNKDDVMVTGVLKDLPQNTSLKFDFLMSFDRWLKNNQWANEWGNNGPRCYVMLSKNASLAKVNAKIKGYIKTKNKDSNVELFLQSYPESYLYSNWDSGKQDGGRIDYVRIFSIIAIVILLIACINFMNLATARSVKRAKEVGVRKVIGAVKGILIGQFMGEAILIAFCALLFSIVLVFLLLPTFNLLTEKDLTLNFTDPSFLLILVGLTLLTGVVAGSYPALFMSSLNPVTVLKGALKFKPGATYFRQGLVVFQFALSITLIVGMIVVHQQINYLQTKNAGYDRKNLLYMPLEGDLQKNFASFKQELQRQPGIKSVTCSQSDPLEVGSSTQGVQWPGKDTTQLLLFANNAITYDYIKTMGIQLIGGRDFSEQYGTDTTNYIINEASAKKMGYKDPVGKEMTMWGRKGTIVGLMKDFHYNTLHSAIEPLILRLQPKTENWGVIIIRAEGGKTPQAIANTEKTFKKFNPNFPFKYLFADQEYANLYKSENVVNKLANYFAFLAIFISCLGLFGLAAFTAEQRTKEIGVRKVLGASVTNLVGMLSLDFIKLVVIATLIAFPVAWYFLKNWLEKYAYRIDIEWWYFALAAIAAVTIALLTVSYQAIRASLINPIKSLKTE
>NC_015703.1|WP_013927702.1|2273851_2274529_-|ABC-transporter-ATP-binding-protein
MIKTANLQKIFTTEEVETTALNGIDLEVKDGEFVAIMGPSGCGKSTLLNILGLLDNPSEGSYDFHGTEVAKLSERQRAQLRKGNIGFVFQSFNLIDELTVYENVELPLLYLKVPADQRKEMVETVLTRMNIMHRRNHFPQQLSGGQQQRTAIARAVVAKPKLILADEPTGNLDSANGEEVMKLLSQLNDEGTSIIMVTHSPYDAGFAHRIVNLFDGKVVTEKMRV
>NC_015703.1|WP_041340508.1|2274616_2274979_+|four-helix-bundle-protein
MAAIQKFEDLTVWQMGLALAIDVYNTLADCKDYGLCDQMQRSSVSIPSNIAEGFEREYNKEFIRFLKVSKGSAGELRTQIYIAIGIGIIDNETGEILLDKSRHISSMLRNLIKVRETKFS
>NC_015703.1|WP_041342695.1|2275041_2276292_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MDRVRKKKFWNTQRIAIFAGGGALIAFIVYQLFFSDKRSKLNVEAEKLTVSAVSTGSFDEFIVVTGVVQPLKIIRLDAIVGGYVREKIVEGGSMVSQGQVLLKLENQNLKLNFLQSETEASRLVNDLQNTRQQLKVARFNIRRTLNELEFKIDQAKDTYERNQKLYKDKVIPESDFLKSKRDYELLVKQKEIETESQTYQEENAKMQIAQLEGTLLRTQRNVDLWRQTLDNLVVKAPVGGLLSSIDVEVGSNISQGQNIGQIDDLNGFKMRVAIDEHYVSRIFVGLGGSFEFNGKDHPLTITRIYPEVKNGRFEVDMSFPKGTPEGIKRGQSTPIRLELGKAEKALLLPVGGFFSDTGGNWVYVLDNSGKRAIKRNITLGRKNPEYYEVLEGLQAGEKVITSSYANFGDKEVLELK

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Crispr_ID: NC_015703_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_4

2377100-2377190

Orphan

Consensus_repeat	Method
TTTCTGTTTATAACCGGTGGAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_4

>merge|NC_015703|4|2377100-2377190|CRISPRCasFinder
TTTCTGTTTATAACCGGTGGAGAAATAATATTTATGGACTTGAGAATATTGCTAACACCTGCCCCTCTTTCTGTTTACAACCGGTGGAGAA

>NC_015703|4|4|2377100-2377190|CRISPRCasFinder
TTTCTGTTTATAACCGGTGGAGAA	ATAATATTTATGGACTTGAGAATATTGCTAACACCTGCCCCTC
TTTCTGTTTACAACCGGTGGAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013927792.1\|2374664_2375063_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013927791.1\|2372161_2374582_+\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_015703.1\|WP_013927802.1\|2387354_2388842_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NC_015703.1\|WP_013927796.1\|2377913_2379593_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NC_015703.1\|WP_013927798.1\|2382743_2383166_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013927788.1\|2369182_2370673_+\|tagaturonate-reductase	unknown	unknown	gnl\|CDD\|235147
NC_015703.1\|WP_013927794.1\|2375472_2377038_+\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NC_015703.1\|WP_013927786.1\|2366009_2367743_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239264
NC_015703.1\|WP_013927795.1\|2377275_2377836_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NC_015703.1\|WP_013927805.1\|2391708_2392761_-\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226235
NC_015703.1\|WP_013927787.1\|2367806_2368991_-\|glucose-1-phosphate-thymidylyltransferase	unknown	unknown	gnl\|CDD\|274907
NC_015703.1\|WP_013927797.1\|2379740_2382596_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NC_015703.1\|WP_013927793.1\|2375073_2375373_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
NC_015703.1\|WP_013927804.1\|2389736_2391695_-\|secretin/TonB-short-domain-containing-protein	unknown	unknown	gnl\|CDD\|372685
NC_015703.1\|WP_013927785.1\|2365010_2365910_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_015703.1\|WP_013927801.1\|2384061_2387151_+\|protein-translocase-subunit-SecDF	unknown	unknown	gnl\|CDD\|237276
NC_015703.1\|WP_013927789.1\|2370760_2371408_+\|DUF1684-domain-containing-protein	unknown	unknown	gnl\|CDD\|377941
NC_015703.1\|WP_013927803.1\|2388899_2389598_-\|PorT-family-protein	unknown	unknown	gnl\|CDD\|372635
NC_015703.1\|WP_013927790.1\|2371571_2372021_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379721
NC_015703.1\|WP_013927799.1\|2383531_2383900_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013927791.1\|2372161_2374582_+\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_015703.1\|WP_013927802.1\|2387354_2388842_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	6.45896e-113
NC_015703.1\|WP_013927796.1\|2377913_2379593_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.90051e-90
NC_015703.1\|WP_013927788.1\|2369182_2370673_+\|tagaturonate-reductase	gnl\|CDD\|235147	PRK03643, PRK03643, tagaturonate reductase.	0
NC_015703.1\|WP_013927794.1\|2375472_2377038_+\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NC_015703.1\|WP_013927786.1\|2366009_2367743_-\|hypothetical-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	0.00730418
NC_015703.1\|WP_013927795.1\|2377275_2377836_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	8.68988e-59
NC_015703.1\|WP_013927805.1\|2391708_2392761_-\|FecR-domain-containing-protein	gnl\|CDD\|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	4.57511e-28
NC_015703.1\|WP_013927787.1\|2367806_2368991_-\|glucose-1-phosphate-thymidylyltransferase	gnl\|CDD\|274907	TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Homologs of this enzyme are identified in a number of bacterial organisms and modeled here. A number of these are observed in proximity to the GlmS and GlmM genes, and phylogenetic profiling by PPP identifies the LEPBI_I0518 gene in Leptospira biflexa as a likely Glm-system candidate. Multiple sequence alignments of these bacterial homologs with their archaeal counterparts reveals significant structural differences, necessitating the construction of separate models. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Central intermediary metabolism, Amino sugars].	1.32572e-130
NC_015703.1\|WP_013927797.1\|2379740_2382596_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NC_015703.1\|WP_013927793.1\|2375073_2375373_+\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	3.6558e-06
NC_015703.1\|WP_013927804.1\|2389736_2391695_-\|secretin/TonB-short-domain-containing-protein	gnl\|CDD\|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	0.000275737
NC_015703.1\|WP_013927785.1\|2365010_2365910_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.4982e-14
NC_015703.1\|WP_013927801.1\|2384061_2387151_+\|protein-translocase-subunit-SecDF	gnl\|CDD\|237276	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed.	0
NC_015703.1\|WP_013927789.1\|2370760_2371408_+\|DUF1684-domain-containing-protein	gnl\|CDD\|377941	pfam07920, DUF1684, Protein of unknown function (DUF1684). The sequences featured in this family are found in hypothetical archaeal and bacterial proteins of unknown function. The region in question is approximately 200 amino acids long.	1.42381e-58
NC_015703.1\|WP_013927803.1\|2388899_2389598_-\|PorT-family-protein	gnl\|CDD\|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	3.07626e-14
NC_015703.1\|WP_013927790.1\|2371571_2372021_+\|hypothetical-protein	gnl\|CDD\|379721	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase. This family is likely to be an uncharacterized group of nucleotidyltransferases.	0.00107499

>NC_015703.1|WP_013927794.1|2375472_2377038_+|ribonuclease-Y
MPDILLLILDAAVSAGVGAVIVYFVIKNTTKKTEEDAQQRAAEILKNAEITAENIKKDRILEAKEKYLRLKSEFEEDSNKKKQIILQNEQKIKQREQQLNQMTEQNKRRENELEALKKNLEQQTEVAVKRRDEAEKMHRSQVEQLERIANLTAEQAKQQLVEALQADAQSQASAYIKNTIDEAKLTATKEAKKIVIETIQRTASEHAIENTVSVFNIESDDVKGKIIGREGRNIRALEAATGCEIIVDDTPEAIVISGFDPVRREIARLSLHRLVQDGRIHPARIEEVVSKTKKNIDDEIVEIGERTVIDLGVHGLHPELVKMIGRMRFRSSYGQNLLQHSREVARLCATMAAELGLNAKLAKRAGLLHDIGKVWPEESELPHAILGMELAKKYKENPEVCNAIGAHHDEIEMTSMMSPIIQVCDAISGSRPGARREMMESYIQRLKDLEALATNFPGVDKCYAIQAGRELRVIVNSDTVNDDTAGKLSFDISQKIEKEMQYPGQIKVTVIREMRSVAYAK
>NC_015703.1|WP_013927793.1|2375073_2375373_+|cell-division-protein-ZapA
MGTIKKRRIVRIKIADKSYEVWADSDEDESFMREAAKKVDAQVELRMKGEADIQKVLAMVCLDSMVARLKGDNDLEVIQSTVFKHLDYLQKHFNPSGQN
>NC_015703.1|WP_013927792.1|2374664_2375063_+|hypothetical-protein
MKLATFEDDRLLDELNFQFLFVERSISALQAAFAHEKAAHSELKSRFEVLQKRYDKQNDELKYERQELKILKIENKQLREKEVSLKEKLNNFKQLSIIVKNPKNVDAITELNTKLDEYIRYIEETITLLQTL
>NC_015703.1|WP_013927791.1|2372161_2374582_+|phenylalanine--tRNA-ligase-subunit-beta
MKISYNWLKELIDIQESAEEIGKVLTATGLEVEGIDPVERVEGGLKGIVIGEVLTCEPFTVKEKTLHLTTVDIGTGIPSNIVCGAANVAAGQKVVVATVGATIYPTGGEPFTIAKRKVYGHPSEGMICAEDEIGLGTSHAGIMVLDTDLPNGTPAADYFGLLPDYVIEIGLTPNRADAASHLGVARDVKAVLNRALKMPPVENFTVADTTSPIEVSVENSEACPRYAGVTISGLTVAESPEWLKDKLKAVGVRPINNVVDITNYICHELGQPLHAFDAAKIIGNKVIVKTLPAGTPFVTLDGVERKLSDRDLMICNAEEPMCIGGVFGGTKSGVSEQTTGIFLEAAYFSPAWIRKTGTFHGLKTDASFRFERGTDPNLPVYALKRAALLIQEVAGGQVTSDIVDIYPNPIPHHEVNVKYKNVDRLIGKVLDRELMKQILTSLDIQIQNETPEGFLASVAPYRVDVTREADVIEEILRIYGFDNIELSENLSADFLSGFPIVDPDKQKLRIANLLAANGFNETMANSLTKPMYNDAVRASLPGEDVVMLNPLSEDLSVMRQTMLFSGLESLAYNLNRRQRDLRICEFGKTYHKVESKYKELSHLVLLMAGNQQAESWLADDQKLAFHDLAGMVHLVLNAFRVQQPEKQEIQDKTIFEYGLTYTIKKKPVVSFGQVKGKLTKLADIKQPVFYADFDWTYLLKQYNDKVRFTEVSKFPEVRRDLSLVLDKAVTFEQIRQTAHKYERELLTNINVFDIYEGANIGTDKKSYSVSFTLQDESQTLTDKVIDRTMQKLMMAFEKDLNAVIRK
>NC_015703.1|WP_013927790.1|2371571_2372021_+|hypothetical-protein
MHDHFLTFIRLLNEENVEYVVIGGYAVAKHGYPRYTGDLDIFVSGTRENAEKLLNVMFNFGFGPYDFDLNDFYGEERFVSIGDEPYKIELLTQTLGVTFADVYQNKEVVVSQDVAINFISYNDLIKNKTAVGRPKDLLDLEHLPPSDEQ
>NC_015703.1|WP_013927789.1|2370760_2371408_+|DUF1684-domain-containing-protein
MLKNKFILGLIAVVVVGVIITTFFGEETTVSDADYVAQLEKERREKDTFYRDSDTSPIADKANFKGLNYFTPNPAYKVVATVILYHSTAQDKQVAVPMTDGSSTTYEKYGFAEFTLPHESKAAELNVYRLLIYKHEKGLSILFRDATAPEETYGGGRYLDFKADDIKDGKLTLDFNVAYNPYCAYNHTYACPIPPKENTLPVRVEAGEKIFEKNE
>NC_015703.1|WP_013927788.1|2369182_2370673_+|tagaturonate-reductase
MPKLSKQVIDSETQYTFDLPVKVLQFGTGVLLRGLCDYLIDKANKQHIFNGRIVVVKSTAGSADDFAEQDGLYTVCVRGVDSEGSTIDEATAVTAISRVISAQDSWQSILQVARNPHLEVILSNTTEVGIQYVEESIFQSPPQSFPAKLTAFLYERFRTYGGKKDKGLVIVPTELITDNGLKLRECVEKISVYNELGKLFNKWLKYHVKFCNSLVDRIVPGKPDAATFAALQEKIGYEDALLTVAEPYLLWAIEGDERVKKVLSFEQVSENVIVDEDISYYRERKLRILNGSHSAAAPLGYLSGFDITFQCMNDPAMSKYYETIIYDEIVPTLPFEEQMDELKVFAGDILNRYRNPFIQQKLIGITLQQSSKMNARNVATIRRYYRQFNKAPKLFTIGFAAYLLFMRAAKQQNEHYLGQRGEEFYVINDEQAAYFYEQWQGVTPETVPAFVQTVLSNPKLWETDLTKLAGFAETVTEYLTEMMNTGVKTTLEKAIL
>NC_015703.1|WP_013927787.1|2367806_2368991_-|glucose-1-phosphate-thymidylyltransferase
MTNYILYDDAAIRRHLLPFTFTRPVSEIRCGILTLTEKWAHFLQAKPSFLTEPYLQTKFPFVATDDNIFINGAVCATSAIAEAVRNLAEGEALAALDQIIAYRSPFEVVDPRQELNVISFPDPIVIIQRVWDIYGENGAQIKADFAALTHDRVSQPLNDPFTRVYAPENVFLEEGAKVRASVLNAENGPIYIGKNATVSEGSVIIGPFALGEGATVNWGAKMRMNTSIGPHCKVGGEVSNSVLFGFSNKGHDGFLGNSVLGEWCNLGANCNNSNLKNDYTNVKLYSYATEAMEDTHRLFCGLFMGDFSKAGISTLFNTGTVVGVNTNVFGAGFQPKHIPSFSWGGLAEGFTEYRIEKALKVAFETVSRRGEAFGETEREILKYVFEISRGYNRK
>NC_015703.1|WP_013927786.1|2366009_2367743_-|hypothetical-protein
MKKTKADLSFCKNPVRRYFVLPAVICFPNTRQDLWASLCCGLFIAFLSPSLYAQTDTLTVRGKVENLSVRLYRQAPEITVARVNILQANREIVRAAPLQPDGSFELKMPLVYPLEECYLTYANVVMPFLGAKGTVKVTLNGDSLTKSDVPLQFEGIHAATNNRHAQFYADFNKWLKANPEKPVKAANAMLFWEKAASERQRKIDFYRAYTKGKDALLDQWVTSSLNEAAKAQLYNYLTQQQQTLPLALSAAAELDTNRFFTFAKADSYRQFTNYALATTPNVPESSLPVSTLARLILQYVPNITPADSLKLVSYTQGETAKMRELKWLSNLFNRKEDTLRMIVAYELFTRKFGAAHSVKELDYLKAAFYAENINNFSLKNLTLWYNHLRPSLQNPYYARSLDELHHIESLDSAVIRTAESKIATATVDDPLEVMPGIWLADTPSYPNETMLWNQLKRKFKGTIVYFLFWTNDEWGRRALAEANALRASMPPNSVEFVYVSEYKTNDDVWREAAIKSRSRGLHLKVDESQNDYLVAEWAITQVPYAVLIDANGKYIRRDAPLPADREGWNKIWTKIFK
>NC_015703.1|WP_013927785.1|2365010_2365910_+|EamA-family-transporter
MNSPLPKPTFVDYLHLHFLVLIWGFTAILGKLINPQLSRISLTFFRTLLASVGLVVVLWLWKEWKRVPANDRWAMLGVGAIMGMHWLTFFGSAHVSSASVCLAGMSTTSLFTSLLEPLFARRRVRPLEIFLSLLVIAGLYLIFRFEVDQSLGLGLALVSAFLAALFTIANSRFVRRYNALLITFYEMNGATVAMLIGLAGVAFTSGLTAKEVIPQSTDWPWLGILAFVCTVYAYSAGVHLLRKVSPFTLNLTINMEPVYGMVLAYFILNERMTAGFYAGSVVILLAVILYPMLNNRFAK
>NC_015703.1|WP_013927795.1|2377275_2377836_-|acyl-CoA-thioesterase
MLAKSVHYSRTTITELMIPAYANFGGKIHGGILLSLMDKVAYACASKHAGTYVVTVSVEGVNFLQPIEVGQLVSLHASINYVGRSSMVVGIRVIAEDVRTGVQKHTNTSYFTMVAKDDEGKPTEVPPLTLETKEDTRRFLEAIKRRELKAAYAGEFDNEKTRLKVDENLHLLKNERCIVSDDAKNS
>NC_015703.1|WP_013927796.1|2377913_2379593_-|S41-family-peptidase
MENPIQNDRRTVRLPILLSITLAAGVFLGATFFGGSKGITDVARGYTKFKEVLQLIDNNYVDTVNTDELVDYSITKMLEKLDPHTYYFNPKDAIAARSQLEGGFDGIGIEFNLYKDTVYVVTPLVGGPSEAVGIQSGDKILKVNNEVFTGAKVDNAFIFSKLRGPRGSQVSIEILRRGVPKPLAFQLKRDRIPTYSVDASYMIDKEIGYVKVTRFSESTYDEFKNALGRLKTQGMKKLLLDLRGNPGGYMDRATNMVDELIAGDKMIVYTDGKDDRYDRQTRTKNAGMFENGSVVVLIDEGSASASEIVAGALQDHDRALIVGRRSFGKGLVQMPVNLSDGSELRLTISRYFTPSGRSIQKPYTHGDVESYEKDIKNRFSHGELFVADSIKNNPKLQFRTDAGRIVYGGGGITPDVFVPRDTSMMTPYLYELFGKNIVRDYAVRYSGENKKQFEKLSFAEFLKTFTPTEADLNAIVANATADDIKFNEKEYKRSKPYIRTYLKAMIGRYAYQKRDKGGLNNEFYQVMSELDEGYKKAVTLFDQAEKLARTSVSLKDGKK
>NC_015703.1|WP_013927797.1|2379740_2382596_+|DNA-polymerase-I
MKPDKKLFLLDAFALIYRAHFAFLKTPRITSKGLNTSAVFGFVNTLLEVLKNEKPTHLGVAFDTPKPTFRHIQFEAYKAQRQQQPEDITIAVPYVKRLLNALCIPVLEVDGYEADDVVGTLAKKAARSGFEVFMMTPDKDYGQLVEEHIYLYKPAIMGKGVEIMGPAEVCARWGVKDISQVVDMLGLQGDAVDNIPGIPGVGEKTAQKLIEEFGSIENLLANTDKLAGKLKEKVIEGADKAILSKELATIDINVPIEFHEEDLLMCEPDRETLSALLDELEFRTLRKRLLGEEAADVKPATTPAADKKGQLNLFGDSASATEKAGQHKSSVSADSGPLFSAGELSSPRRTVANTLHRYHLVDTPELRQSLAHYLSLQESFCFDTETNSLDAIDAELVGMSFAYQKGEAFYVTVPSDREEAQKVVEDFRAVLEDEKIEKIAQNLKYDLLVLQNYGVEIRGPIYDTMLAHYLIEPEKRHNMDVLANSYLNYEPVSIESLIGKKGPKQLTMRDVDMERLVEYAAEDADVTLQLKEKLNPILIANQAEKLFREVEVKLVPVLAGMERAGVKVDMNALKEMSAVLETDMKSVEKDIYQLAGEEFNISSPKQLGVVLFEKMQLIKKPKKTATGQYATGEDILSDLEAEHEIARKILDYRELQKLKSTYVDALPLLINAKTGRIHTSFNQAVAATGRLSSTNPNLQNIPIRTPRGREIRKAFVPHSEDFVILSADYSQIELRIMAAFSQDATMLEAFNQGVDIHASTASKVFKVELSEVNSDMRRKAKMVNFGIIYGISAFGLAQRLGIPRSEAGEIIRAYFEEFPAVKTFMDLSIQKARENKYVETILGRRRYLADIDSQNQTTRSFAERNAINAPIQGSAADMIKVAMINIHDFLKKEKLRSGMILQVHDELVFDAHRDEVELLTQRVNELMINAIPLPVKIETGIGIGNNWLEAH
>NC_015703.1|WP_013927798.1|2382743_2383166_-|hypothetical-protein
MTLRHFSPFIGLLSAFCLFVSCARPVTTSDGGLGIPIKLAKADYPIDVFYESQPTTRLYTPIGPVKVEKEVPLSERQTKEGRMLFRGNDEDQKRALLDQLILQGVGMGAHALVNVKYQYYTAKDYQGFIMTGTAVKYGNQ
>NC_015703.1|WP_013927799.1|2383531_2383900_+|hypothetical-protein
MKQRRLSTQLTSATLALLLVLTATVGKLLSVPKAVVKKPLSEQTSKSKKSNEERPVVQEMSLEAVVAPAISFDFEQSFYFLPTVFSIELPGNNALPKRFDVFYYFFSFFRNVFGHFIAINAP
>NC_015703.1|WP_013927801.1|2384061_2387151_+|protein-translocase-subunit-SecDF
MQNRLGIWILTVVVAVLSIYYLSFTFVARGIRKDAEAFATGKDGVVDQKKKERYLDSLRREPVYLGSTYQEVTQRELGLGLDLQGGMHVVLEVAPTDIMRGLAGGNARNSQFGEALKQAAEAQKSSQSNFVDLFVSAYKKVAPNATLAQIFSNSTNRGKISNSSSDSEVTKFLKEEVDGATSRAFQIIQQRVDKFGVANPNIQRLPGSGRILIELPGVDNPERVRRLLTGSAKLEFCEVYTLDEVSPALNALGAYLTQLDLEKKIAQKGSSVADTSKAGGLAAQLAKGAKTDSTSKDTTANQTGLASLFVPISQGQLGVYAKDTARANELLARSEVKAMFPSDAVIMWDRKGIETTDKRNEIVGIYFIKKANGQAPLEGDVIVDATGNNYDDRGRPEVSMRMNAEGARKWKNLTAANVGRPVAIILDGFVYTAPNVQNEIPNGNSSITGSFTIDETKDMANVLKAGKLPAPTTIVEEAIVGATLGSESVSAGVISSLVGLLVVLIFMVIYYNKAGMIADVALIINLFFLMGIMASLGAILTLPGIAGIVLTIGMAVDANVLVFERIKEELAAGKELKLAISDGFKNSLSSILDSNVTTLLTGIILFFLGTGLILGFATTLVIGILTSLFAALFVSRLILEWWVGKGRKIEFFASWSQNLFKDANFDFVSRRRLYYIISSVIVGLGIISVIFKGFGLGVDFKGGRSYVVRFEKGVETSEVREILTGVFGAAPEVKTFGGIGIGANEQVKVTTSFLADATTPDADKQAEAKLNEGLSKLSGNKATIQSSQKVGPTIAFDLIMTSLKSILLAVLVVSMYIFIRFRKVAFVWGAIVALFHDVLVILAVFSIFNGLLPFSLDVDQAFIGAVLTIMGYSMNDTVVVFDRVREYLRDNKGKKETIPAVINNALNSTLSRTAVTGLSTMFVLIVLFIFGGEVIRGFSFAMLIGVIVGTYSSLFVATPIVVDSLTRDQVKDEASTEEKKAAPARLISDFPDTPRGGLQQVEMPQEEEEEKEKVKKEKKAPLIKPSLKK
>NC_015703.1|WP_013927802.1|2387354_2388842_+|amino-acid-permease
MDNSIWRRKPIAAFEADIKNNQLKRVLGKWSLTAIGIGAIIGGGIFVLTGTAAHYHAGPALALSFVVAGIGCIFAALCYAEFASMLPVEGSAYAYAYGTIGELFAWAIGWGLILEYAMGAMTVAVSWSGYFNKLLHLFGIEIPFWLRNDPVSAGQFARDNGLADPGFAVNLPAFFIVWVVTYILIKGIKEAASANNVIVILKLAAIVFIILVGAFFVHTQNWVPFIPAVELVEHADGTMKEAYGWAGVLSGASAIFFAYIGFDAVSTQAGEAINPSKDMPFAIIMSLVICTVLYILVSLVLTGMISYKDITGDALKAPVAFAFDKAGQPWAVFIITAAATAGLISVMLVMMLGQTRVFLGMSKDGLIPGFFKEIHPTFKTPWKSTLLVGTLVSVVAAFTPIGLLGDMTSFGTLFAFAMVCLAVLILRFRDPNRERPFKAPFLTIVAPLGILVNTVLILMLDGLAQKLAFGWLLLGLVVYFAYGRPNSFLNNYKED
>NC_015703.1|WP_013927803.1|2388899_2389598_-|PorT-family-protein
MKRLRCLFTAIAIVCVGVSARAQVALGARGGVSLAKTTGNGGFIENFTGNLDYIVSGNGAVFLKVPIAGGLSFRPELGYKQSGAGISSDNLLDLIGVNIPLGGSIRQRLTYIQAPMLFQYDFGDEDSPVQPYLIAGPTFNYLADGKIVSRADLIIFQTQPTRTPIGLGTFNRFEVGAAGGAGLSFNVGSSKVFIEGRYERGLTRLYDTPIVRVPVHNQSFSVLAGFSIPLGR
>NC_015703.1|WP_013927804.1|2389736_2391695_-|secretin/TonB-short-domain-containing-protein
MKHVLNLNIFRFSALRNRVTYVIFLLLFGLVSLLSFAQKSSILDRTITVRLTNERLEDVLRLIGERGHFSFSYNPNEFDLNRRITLNANGKAVRQVLDEVFKGSATYKERRGHIILQKLAEIPVEKPQDIIINGYVFDRATGERIAQASIFEKRTLASAVTNQAGYYRIKIPSTLANPRLEVRKERYFGTGIAVTERTLDISLVQMPLDEKLQVAAPQLKSISRAATDTFNVKVPAVQPVLVASNDTALAATKPRRINLENVEKTFVDAFASAKQAVHIQNVRDTFYRPFQVSLLPFVGTNHVMSGNVVNSLSFNIIAGYSLGVNALEFGGFANLVRWDVHGAQFAGFANLVGRNVYGLQASGFVNAVLKNVEGMQLSGFVNATGGNHSGVQVAGFANLTGQNFYNGFQTAGFASVTLGKMYGWQMSGFGNVTLGDMNGWQISGFGNVALQKLRGVQISPFINYATVHEKGLQLGVFNYADSSGAIPVGLFSFVRRNGYRRLEISTDELNYANVSFKTGVRRFYNIVTIGGSFGVADKPLYTFGYGVGTAVNLGRGWMTNLDLTANKIMEATNRFGSSNGNFYRASLGLEKKIARQLALFGAASFTILTAQPGYLKTDKSTLYQPFANTTLNNGLDLTNWLGFQAGIRILNR
>NC_015703.1|WP_013927805.1|2391708_2392761_-|FecR-domain-containing-protein
MNSNVPIPDDLLARYVSGETTPDETRQVKAWLDQSAGQEEELLRFQKIWETANVVKPPAEFHVDAAWKKVSKQIATQPTAVDKPSPVPPLTVHRNKDGVRPLNTAGKPSTFIFWRAAASIVMVLGLGWLGYRFFERTNEPAIAKVLETQEKTIEQTLPDGTTVFLNHNTTLSYAEDFGRDTRTVILKGEAYFDVKRDENRPFIIQANGTEVRVLGTSFNVRAYDKKVNVAVTSGKVQFSTPKAKTLLLKDETATAQADTIIKLPAVDLNAMAYRTRVFVFDRTNLGDVVASLREGYQTDIQLTGRLKNCQLTARFERESLDAALSVIAETLNLQVTRKGKTILLDGQGCP

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Crispr_ID: NC_015703_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_5

2755362-2755461

Orphan

Consensus_repeat	Method
TTAGCGTGAAGTAAAGAATAAAAAGCAGAGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_5

>merge|NC_015703|5|2755362-2755461|CRISPRCasFinder
TTAGCGTGAAGTAAAGAATAAAAAGCAGAGTGGCATGTCAATTCTGAACCTCCCTTAACCCCCTGCGTTAGCGTGAAGTAAAAAATAAAAAGCAGAGTGG

>NC_015703|5|5|2755362-2755461|CRISPRCasFinder
TTAGCGTGAAGTAAAGAATAAAAAGCAGAGTGG	CATGTCAATTCTGAACCTCCCTTAACCCCCTGCG
TTAGCGTGAAGTAAAAAATAAAAAGCAGAGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013928111.1\|2753729_2754863_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|235056
NC_015703.1\|WP_013928107.1\|2749143_2749812_+\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350617
NC_015703.1\|WP_013928106.1\|2747437_2748904_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_015703.1\|WP_013928115.1\|2759710_2760589_-\|UbiA-like-protein-EboC	unknown	unknown	gnl\|CDD\|260127
NC_015703.1\|WP_013928109.1\|2751562_2752162_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928117.1\|2761620_2762472_-\|EboA-domain-containing-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928110.1\|2752213_2753572_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223523
NC_015703.1\|WP_169704681.1\|2764337_2765246_-\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|227949
NC_015703.1\|WP_013928108.1\|2749815_2751258_+\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|227116
NC_015703.1\|WP_013928104.1\|2746061_2746904_+\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377456
NC_015703.1\|WP_013928114.1\|2758530_2759697_-\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|235740
NC_015703.1\|WP_013928119.1\|2763129_2764194_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928103.1\|2744520_2745987_+\|M61-family-metallopeptidase	unknown	unknown	gnl\|CDD\|226483
NC_015703.1\|WP_013928105.1\|2746928_2747279_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
NC_015703.1\|WP_013928112.1\|2755534_2756917_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366747
NC_015703.1\|WP_013928118.1\|2762645_2763122_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NC_015703.1\|WP_013928116.1\|2760590_2761610_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|224024
NC_015703.1\|WP_013928102.1\|2743503_2744082_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|237823
NC_015703.1\|WP_013928113.1\|2757158_2758355_-\|metabolite-traffic-protein-EboE	unknown	unknown	unknown
NC_015703.1\|WP_013928121.1\|2765292_2765835_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013928111.1\|2753729_2754863_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|235056	PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.	1.25876e-138
NC_015703.1\|WP_013928106.1\|2747437_2748904_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.34904e-30
NC_015703.1\|WP_013928107.1\|2749143_2749812_+\|M15-family-metallopeptidase	gnl\|CDD\|350617	cd14840, D-Ala-D-Ala_dipeptidase_Aad, D-Ala-D-Ala dipeptidase (includes Lactobacillus plantarum Aad peptidase). D-Ala-D-Ala dipeptidase (also known as D-alanyl-D-alanine dipeptidase vanX; VanX; EC 3.4.13.22) is a Zn2+-dependent enzyme that mediates resistance to the antibiotic vancomycin in Enterococci and other bacteria (both Gram-positive and Gram-negative). It is part of a gene cluster that affects cell-wall biosynthesis. The operon triggers the termination of peptidoglycan precursors by D-Ala-(R)-lactate instead of D-Ala-D-Ala dipeptides. The enzyme is stereospecific, as L-Ala-L-Ala, D-Ala-L-Ala and L-Ala-D-Ala are not substrates. This subfamily includes Lactobacillus Aad peptidase and belongs in the MEROPS peptidase family M15, subfamily D.	2.40252e-78
NC_015703.1\|WP_013928115.1\|2759710_2760589_-\|UbiA-like-protein-EboC	gnl\|CDD\|260127	cd13964, PT_UbiA_1, UbiA family of prenyltransferases (PTases), Unknown subgroup. Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.	5.47633e-90
NC_015703.1\|WP_013928110.1\|2752213_2753572_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	1.82084e-51
NC_015703.1\|WP_169704681.1\|2764337_2765246_-\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|227949	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription].	2.55604e-07
NC_015703.1\|WP_013928108.1\|2749815_2751258_+\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|227116	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane].	2.41164e-14
NC_015703.1\|WP_013928104.1\|2746061_2746904_+\|DivIVA-domain-containing-protein	gnl\|CDD\|377456	pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.	5.35882e-18
NC_015703.1\|WP_013928114.1\|2758530_2759697_-\|3-dehydroquinate-synthase	gnl\|CDD\|235740	PRK06203, aroB, 3-dehydroquinate synthase; Reviewed.	0
NC_015703.1\|WP_013928103.1\|2744520_2745987_+\|M61-family-metallopeptidase	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	2.70388e-69
NC_015703.1\|WP_013928105.1\|2746928_2747279_+\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	1.54095e-36
NC_015703.1\|WP_013928112.1\|2755534_2756917_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	1.98255e-56
NC_015703.1\|WP_013928118.1\|2762645_2763122_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	6.00934e-74
NC_015703.1\|WP_013928116.1\|2760590_2761610_-\|TatD-family-hydrolase	gnl\|CDD\|224024	COG1099, COG1099, Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only].	1.08296e-104
NC_015703.1\|WP_013928102.1\|2743503_2744082_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|237823	PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase; Provisional.	1.06021e-96
NC_015703.1\|WP_013928121.1\|2765292_2765835_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.43286e-32

>NC_015703.1|WP_013928111.1|2753729_2754863_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MNLFNVYPIYDIEPVRAQGSWLWDSKGEKYLDLYGGHAVISVGHCHPHYVEKMTEQLRRINFYSNSVRIPLQEELAQKLGELSDCPDYTLFLCNSGAEANENALKLASFYNGGKKVVAFTKAFHGRTAGAVAITDNPSIVAPVNYNAHVTFLPFNDVEAIRNHDMTDVCAVIVEGIQGVGGIQVASEAFLRAIREKCNETNVTFILDSVQCGYGRSGKFFSNQHYSNLQADVYTTAKGMGNGFPIAGVLISPKFQAKYGMLGTTFGGNHLASAAGIAVLDIMKDEQLMANATEIGEYLMKSITEIGGYKELRGRGLMIGIEYDFPVEELRNKLLFDHKLFTGVAGKNTIRLLPSLAVTKAEVDLFLEALSKEIRVTA
>NC_015703.1|WP_013928110.1|2752213_2753572_+|NAD(P)/FAD-dependent-oxidoreductase
MHIVIIGNGIAGITAARHIRKHSDARITVISKETDHFFSRTALMYVYMGHQKYEHLKPYEDWFWAKNRIELVRGTVEAIDFSQKVVQLSSDACSITYKPSWLERLTKVAPKQATKEAVTSQFSYDKLILATGSVPRMGDWKGRELEGVQGLYSFQDLELLEHNTAGLRRAVIAGGGLIGVELAEMLHTRHIDVTLLVREKSYWNSVLPDEESELVSKHLQKRGIELRFNTEIKEIKGTKRVERVETSKRESIECQLVGLTIGVAPNISFLASASSPLKINKGIVVNEYLETSVPDVYAIGDCVEHHTPLEGRKPIEQIWYTGRIMGETVAQTLCGKRTAYQPGVFFNSAKFFDLEYQTYGEVPAKLPEGIETFYWQHPDKEVAVRINYRADTKAVTGFNALGTRLRHAVCEAWIKEKKTIDHVLHNFPQANFDPEFFEKLPSLSLQSLASRE
>NC_015703.1|WP_013928109.1|2751562_2752162_+|hypothetical-protein
MRVRFIKQICVTFLIAVSAIWVCSCDTTNQQAGEEDKPAADTTAESTTNVPNTGQSELLRTVLGKAGGDFRGVNFNDPISKIKELETFELFEDSTNHVGFTYETENFEAIDVLYYLDKNQLLNGIRVDVYLNDANSVKGLWAQFETYLSGKYVIDKKQGNAAYWKDKGGRMVKLEDVSKGKDFGLRLSMGVKGIKEMPL
>NC_015703.1|WP_013928108.1|2749815_2751258_+|BamA/TamA-family-outer-membrane-protein
MLLLNLFHAFWFSVSGISADTTEKIIVRRVTFTGNFRTRERIIRREMDVRDGDTLTRQKLDSLLEYDRRKILNTNLFVTVELKKKPVVDTTQLTYITADGKRIENLKMIDLDVIIKEQWYLLAFPVFQLADRNFNEWWYERDRDLSRTIYGAYVLHQNLTGNNDRLRLRAEFGFIPRLDIYYSTPYLDKKQRTGLTVGILRLTNRTVAYRTRSDKLVFLGSESRTRERIVPYLTITHRPKFYGHHSFSAQYSTTSITDTIARLNPNYFLNGRSRQNYLQLAYSHFYDRRDRGQYALRGFFYGVYISQSGVLPNDDINLLEGSANFGQYVPLAKKLFFSYMTKAKLSTPGRQPFLQIRGLGYGGDLVRGYELYVIDGQHFGYVKTNLRYQLLNRTFNLSRLIKFRQFNTFPLAIYPNIYADFGYARNPYPELNNSKLANRLLTGGGIGIDFVSWYNFVGHLNYSINHLGEARPYFSFGREF
>NC_015703.1|WP_013928107.1|2749143_2749812_+|M15-family-metallopeptidase
MIAGVLATLGVTGYAQTKLSPFERKFIERGLVDVQKLDPTLKVELKYSTTDNFIKEDVYGDLERAYLQPMAAEKLVKANKFLKQEKPDYTLLVYDGARPRSVTKIFWKRMSHLPYNRREDFVADPARGSIHNFGCAVDLTIADEKGQPLDMGTIFDFFGELAEPRREAAMLKAGKLTKQQLENRKLLRRVMVKAGYTSIQTEWWHYNAMSRERAKATYGFIE
>NC_015703.1|WP_013928106.1|2747437_2748904_-|Gfo/Idh/MocA-family-oxidoreductase
MKSKQKDMTVSRRDFVQKSAMAVGSFFIVPRHVLGKGFTAPSDKLNLAAIGAGGKGTSDIFNASNNGVNNVTALCDVDYKQAAKSIERFPNAAKYKDWRVMFEKEGKNIDAVTISTPDHNHAVIAMAAMQLGKHVYVQKPLTHNIYEARMMTEAARKYKVVSQMGNQGASNPAQLQMVEWFNKGLVGPVHTVQIWTNRPVWPQGIPTPSGKPDMPEGIAWEQWVGPAQWVDYHPGYHPFKWRGWWNFGTGALGDIGCHTIDTPFRVLGLNYPTEVECSVGAVFIKDWQPEWIPEGCPPSSSVEIKFPATAKNKTEMKMVWMDGGLRPFHPDWIPASEPLSTDGNGANGVLMIGTKGIIACDMYGNNPKIYMKNGDKIVMAKDSKYAAPVNLPEYGHQIHWTEACKAGFGSDKHKGLMSSFDYSGPLTETVLMGNLAIRSYMLRKAQGNGFDYYGRKKLLWNGTDMKITNFDDANQFVSRPYRDGWKLV
>NC_015703.1|WP_013928105.1|2746928_2747279_+|dihydroneopterin-aldolase
MGTVSLEGIEFFAYHGTSEEEQKIGNKFSIDVTITTDFTEAARHDRLKGTVNYEVVYRVVAKVMQKSSRLLEHIAYNIIEEIRSAYPQVDTIEVSVSKFNPPVGGVCARSRITMKG
>NC_015703.1|WP_013928104.1|2746061_2746904_+|DivIVA-domain-containing-protein
MKITPIEIRQHTFQRVLRGYDVEEVGAFLSSLSNEWERVLNENKMLKMQLEIAEKDLNKLREVELTMFRMLKTAEDTSAQMTEQAKVAAEQYIEDARQKGEDLVNDARKKANMLVVDAENQSKYVREEILGEFKNHERDFKAMEKYRDNLIVQLKTLANNTVDSIERFEKKFSQVTVQEKFNDLRIQVTDSLKIGEDVQKVRLESEKAVEEVIAGEAPEESVAAIEGDATAKTPEDTAAITEAEVAEETVEESKEEPTEQEGKPDNDKKIQEEGSFFDQI
>NC_015703.1|WP_013928103.1|2744520_2745987_+|M61-family-metallopeptidase
MQYRLYSDHPESRYIEVECSMKITPAELLEIQLPAWRPGRYELQNFAKNIQQFGVFDTEGNALSFRKITKDRWLVQTREVSDIIVRYNYYSNVLNAGSSYVSDEFWYVNPVNLCVYTDENLDKPCTLELVIPDDYLIACGLPQQPQPGATGSKILMAKDYYELVDSPLIASATIQCRTYQVDTTIFHVWMQGNIKPDWQRILADFQKFTAAQVKTMGGFPESKYHFLNLILPTPYYHGVEHRHSTMIVLGPDDEGEGLYTDLLGVSSHELYHAWNIIRIRPKELLPYDFTKENYFSTCFVAEGVTTYYGDLYLRRSGVFDDTAYFRELQVYMKRHFENNRDAQQSLTESSWDLWLDGYEKGIPRRKVSVYHKGALAALVLDITIRRNHEHKKSLDDVMRLMWQRFGIPFVGYSFEDYQAVVEEVAGEPLEWYWKDCILSNTPLENHLNHALSWVGLQMVTFSDGTVHLQELENERAVLQRNKWLNDDC
>NC_015703.1|WP_013928102.1|2743503_2744082_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MKLCFATNNLHKLQEIKAILGDSFTLNTLKEIGCEEELPETTDTIEGNSRQKAEYVWEHFGTDCFADDSGLEVTALNGAPGVHSAYYGGSRDFQQNIARVLEELAPHTDRSARFKTVITLVIQGESYQFEGIVTGQLLKEQRGTQGFGYDPIFRPDGHERTFAEMTIEEKGKLSHRAKAFATLVDFLRSYKS
>NC_015703.1|WP_013928112.1|2755534_2756917_-|alkaline-phosphatase-family-protein
MQKTVVINIVGLSANLIGEHTPFLSHYIKSRHITPIKPVLPAVTTTAQSCYVTGKWPTEHGIVANGWYDRDDAEVKFWKQSNKLVKADKIWDAAKHRDPSFTCSKMFWWYNMYSTADYSVTPRPQYHADGVKAPDCYAYPATLRDELQKDLGQFPLFNFWGPNANIKSTKWIADASMWVDSKHNPTLTLIYLPHLDYCLQKFGPDFSKISKELNEIDTVVKELVEFYEAKNTNIILLSEYGINPVNRPVHINRILREEGMIAVRNERWYELLDAGASKAFATADHQIAHIYLNDPSVKEQVKKRLEQTPGIEMVLDEAGKKAHHLDHERSGDLVAVAAPDSWFTYYYWFDDAKAPDYAHLVDIHRKPGYDPVEMFMDPKNPLIKLRAGYKLGRKLLGFRYLMDVIPLDATLVKGSHGGISAAKEFYPICVTDQPLPQKELKATDVYEVIWKHLVERKSQG
>NC_015703.1|WP_013928113.1|2757158_2758355_-|metabolite-traffic-protein-EboE
MQTPHGHLTYCSNIHPGERWDEHFRTLQENLPYIKSQLSPNAPFALGLRLANDASIELSHPERLAVFKNWLNANDIYVFTMNGFPYGGFHATRVKDDVHTPDWTTVDRTEYTKRLFHILAQLLPEGMEGGVSTSPLSYRYWWQSEEETQQAIKIATENILQVADTLIELRRTTGKTMHLDIEPEPDGILENGREFIDWYADYFLPKGIAYLQETHDFTPEDAKEALLTHIQLCYDVCHFAVSYEEPQIIVDQLNELGIRVGKIQISSAIKIDLRENKEEKLKAIQSFDEPVYLHQVVAKNTDGTFQKYRDLPEATAGDTHLHNEWRIHFHVPLFIESYGLLDSTQGDIVNTLHVQKATPFTKHLEVETYTWGVLPADMQKPIGESIVRELDWVRGQLE
>NC_015703.1|WP_013928114.1|2758530_2759697_-|3-dehydroquinate-synthase
MQTLQQSFQVPYTYSIFFTKGLFSLKNTVLSSFFRSFVEAGFQRKALFVIDGGFLAHYPSLPQSIISYFSGVEDAVKLVPDILVLPGGEEAKNDPALFDKIVEAIDEHGIDRHSFVVGIGGGAILDLVGYAAAVSHRGVKHIRIPTTVLSQNDSGVGVKNGINYRGKKNFLGTFAPPIAVFNDLSFLQSLDDRDWRSGIAEAIKVALIKDKAFFEWIEANAEALAQRSEDVMAYLIHRCAEMHVEHIRSGDPFEFGSSRPLDFGHWAAHKLEYLTDFQIRHGEAVAIGIALDSVYSVKVGKLSDDELQRILAVIQKLGFDLYHPKLAENDKINLRNGLREFREHLGGRLTIMLLDRIGKGVEVHEMDADLIAEAVDYLEGHFSSLLMS
>NC_015703.1|WP_013928115.1|2759710_2760589_-|UbiA-like-protein-EboC
MSVLKSYLQLTRPANIVTAIADIAAGMAIAQFVFPPSPDDPAYRLVLATVGLYGGGVVMNDVFDAKLDAVERPERPIPSGRVPLGAAAFMGLSLLALGILSAWFFSPLSGGIALSVALLALLYNRYAKHSAVFGPLTMGLCRGGNLLLGMSAVNTALPAWGWLALVPIAYIGAITLISQDEVHGGKRRSLYIAASLYTTVHALQLLVAVNQGNGTMALLLIILHAFLVGNPLWKAIQNPIGPNIGKAVKAGVLSLIVMNAAWCIAFGNWPVALGVLLLLPFSILLARAFAVT
>NC_015703.1|WP_013928116.1|2760590_2761610_-|TatD-family-hydrolase
MCLTDKELTQNPSHFDESDEIVTHRDMGWEEYRELIRGMRFFDPHIHMVSRTTDDYEAMRDAGIVALIEPAFWVGQPRTGLSTFKDYYSSLVGWERFRSSQFGIKHYCTIGLNSREANNEPLADQVMEILPLYAYKEGVVGIGEIGFDDQTAAEEKYYRLQLELAKKANLPVQIHTPHRDKKKGTERSMAIALEHGLDPSWVIVDHNNEETVKSVLDQGFWAAFTIYPFTKMGNERMVKVVEHYGPNQIMINSAADWGISDPLAIPKTAALMKMRGIDDETIRRVTYQNAIDAFAKSGQIDVSDFENGLNVDQSEKFNGNTILRGGQQPRVAKDSLVIR
>NC_015703.1|WP_013928117.1|2761620_2762472_-|EboA-domain-containing-protein
MLTKINSLLWEILTAQIAPSEAKWLEENGVAEPLELMTAFVAAPRFLAKRTVKPTVRQTLELNEILPGFSVEDWGIVRLSRVWLLSCLDTAKKEEYCRHIETLFDTAEMNEMVALYSALPLLEYPEKWLFRATDAVRSNMGVVFDAIALKNPYPTAHFTELAWNQLVLKAIFNDKPIHFIVGLDERANENLALTLSDFAHERWAAGRTVPAQVWRLVSKFLNEELLSDMEHLFRSKSLYDQQAAALTCHHSEYEPAKQLLAHYPDLEKNVLHHQLTWTHLEIY
>NC_015703.1|WP_013928118.1|2762645_2763122_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSLTHLNSEGNPSMVDVSEKAVTKRVAKARSIVVLGDEIMDLLQNDEIHTKKGPVFQTAVIAGVMAAKRTGELIPLCHPLGLENCQVEITVNEAREVVIVCTASVTGKTGIEMEALTGASVAALTIYDMCKAMSQHIIIKETRLVAKTGGKKDFLAEL
>NC_015703.1|WP_013928119.1|2763129_2764194_-|hypothetical-protein
MQKFMLFVCTLVIAGGTYAQESKTFKTKFNGANKRVVMDIDAKQLDIEGYNGDEIVIEGLNVPSVPKEADGLRPLSAAGVDNTNLGLATNITGDVMKINVVMKGKTLYKMKVPKELSLVVKKRNSCSCNETGMSISNMEGSIEVNTNYEAITLTNVTGPVVANTHQGEVKVVYDEKMPDKPSSIVSYGGNIDVTVSEKAKVLFSISSTDGNMFTDLDLKPYTPDAKALEEEKKMMEELRSNAAKKAQWDKDVAVAARKSKQDAETIVGQAVQPAAAGGSVTIRSTSPNVIVNRGYVSDDNVLMTGQNGLFYSYSDGQYKYWDSDRNAPRYVLNDAQTKISIRANQGNVYLRKKK
>NC_015703.1|WP_169704681.1|2764337_2765246_-|HEAT-repeat-domain-containing-protein
MLNEQIITDYLLGLLSEAERIVFEQRLAADPILRKEVDELRRVWHDLQNAEAETDDEMDAHFYRALQGEKMLENTIVALKPQSWLTYLKYAAAVAGVALTFWLGRQTAPTQIEYRTLTAAPSITKPIDSLSPPQESITELTNLSDKSGKKPKDETISQQIASLQREMKMTQELVILSLLKDPSASERLKGLNYASALNAPKPAVIQALIRTLREDESLNVRLSTIETLERFKQTDDVKKVLVSQLTQTNEPAEQTTLIETLVRMKVKESVPIFEQLQKDEKVDESVRLLAGRSIGELSMITE
>NC_015703.1|WP_013928121.1|2765292_2765835_-|sigma-70-family-RNA-polymerase-sigma-factor
MTDEQAMYAVSRGDLDKAAILYERYKKPLLNFFLYRQNDRENARDLTQQVFLRMLRYRHTYREGASFRTWVLEIARNVFFDYLKQNPTHSDLADVPDMGESYDETEEQHQYLYHALARLPDGYREVLMLSRFQNMSYEEIGQTLGLSVPNVKVRVFRALQKLRDLYFNVSRDGYRSEESE

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Crispr_ID: NC_015703_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_6

3071325-3071427

Orphan

Consensus_repeat	Method
CCCATCGCTTTAGCGTGGGGAGAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_6

>merge|NC_015703|6|3071325-3071427|CRISPRCasFinder
CCCATCGCTTTAGCGTGGGGAGAATGCAAAAACTAAACAAACAAGGGCTTTAGCCTTTACAATACAGCCCTTGAAACCCCATCGCTTTAGCGTGGGGAGAATG

>NC_015703|6|6|3071325-3071427|CRISPRCasFinder
CCCATCGCTTTAGCGTGGGGAGAATG	CAAAAACTAAACAAACAAGGGCTTTAGCCTTTACAATACAGCCCTTGAAAC
CCCATCGCTTTAGCGTGGGGAGAATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013928350.1\|3071481_3073491_+\|beta-galactosidase-jelly-roll-domain-containing-protein	unknown	unknown	gnl\|CDD\|225789
NC_015703.1\|WP_013928352.1\|3076112_3076688_+\|DUF4142-domain-containing-protein	unknown	unknown	gnl\|CDD\|379301
NC_015703.1\|WP_013928356.1\|3078707_3079739_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NC_015703.1\|WP_013928353.1\|3076728_3076932_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227213
NC_015703.1\|WP_013928340.1\|3053528_3054542_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_015703.1\|WP_013928354.1\|3077229_3077766_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374895
NC_015703.1\|WP_013928344.1\|3060637_3062440_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|378963
NC_015703.1\|WP_013928341.1\|3054879_3057945_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NC_015703.1\|WP_013928351.1\|3073620_3075972_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|378963
NC_015703.1\|WP_013928347.1\|3065483_3066557_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350108
NC_015703.1\|WP_013928358.1\|3080775_3081120_+\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_015703.1\|WP_013928349.1\|3069468_3071178_+\|Na+:solute-symporter	unknown	unknown	gnl\|CDD\|271371
NC_015703.1\|WP_013928355.1\|3078118_3078541_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376805
NC_015703.1\|WP_169704704.1\|3080364_3080700_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928345.1\|3062487_3063477_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NC_015703.1\|WP_013928338.1\|3049541_3050561_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350108
NC_015703.1\|WP_013928357.1\|3079877_3080309_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_015703.1\|WP_013928339.1\|3050570_3053516_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|375009
NC_015703.1\|WP_013928342.1\|3057975_3059406_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NC_015703.1\|WP_169704702.1\|3059470_3060631_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013928350.1\|3071481_3073491_+\|beta-galactosidase-jelly-roll-domain-containing-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	9.93117e-61
NC_015703.1\|WP_013928352.1\|3076112_3076688_+\|DUF4142-domain-containing-protein	gnl\|CDD\|379301	pfam13628, DUF4142, Domain of unknown function (DUF4142). This is a bacterial family of unknown function.	1.56247e-49
NC_015703.1\|WP_013928356.1\|3078707_3079739_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	1.08658e-105
NC_015703.1\|WP_013928353.1\|3076728_3076932_+\|hypothetical-protein	gnl\|CDD\|227213	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown].	2.82249e-14
NC_015703.1\|WP_013928340.1\|3053528_3054542_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	8.60912e-105
NC_015703.1\|WP_013928354.1\|3077229_3077766_-\|hypothetical-protein	gnl\|CDD\|374895	pfam16940, Tic110, Chloroplast envelope transporter. Tic110 is a family of chloroplast envelope proteins. Some are involved in protein translocation and others are neurotransmitter receptor, cys loop, ligand-gated ion channel or LIC proteins.	0.000160313
NC_015703.1\|WP_013928344.1\|3060637_3062440_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|378963	pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family of proteins contains FAD dependent oxidoreductases and related proteins.	4.73466e-94
NC_015703.1\|WP_013928341.1\|3054879_3057945_+\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_015703.1\|WP_013928351.1\|3073620_3075972_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|378963	pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family of proteins contains FAD dependent oxidoreductases and related proteins.	5.59507e-128
NC_015703.1\|WP_013928347.1\|3065483_3066557_+\|hypothetical-protein	gnl\|CDD\|350108	cd08994, GH43_62_32_68_117_130-like, Glycosyl hydrolase families: GH43, GH62, GH32, GH68, GH117, CH130. Members of the glycosyl hydrolase families 32, 43, 62, 68, 117 and 130 (GH32, GH43, GH62, GH68, GH117, GH130) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases (EC 3.2.1.37), beta-xylanases (EC 3.2.1.8), alpha-L-arabinases (EC 3.2.1.99), and alpha-L-arabinofuranosidases (EC 3.2.1.55), using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 comprises sucrose-6-phosphate hydrolases, invertases (EC 3.2.1.26), inulinases (EC 3.2.1.7), levanases (EC 3.2.1.65), eukaryotic fructosyltransferases, and bacterial fructanotransferases while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Members of this clan are retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) that catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. Structures of all families in the two clans manifest a funnel-shaped active site that comprises two subsites with a single route for access by ligands. Also included in this superfamily are GH117 enzymes that have exo-alpha-1,3-(3,6-anhydro)-l-galactosidase activity, removing terminal non-reducing alpha-1,3-linked 3,6-anhydro-l-galactose residues from their neoagarose substrate, and GH130 that are phosphorylases and hydrolases for beta-mannosides, involved in the bacterial utilization of mannans or N-linked glycans.	1.64536e-113
NC_015703.1\|WP_013928358.1\|3080775_3081120_+\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	1.63039e-06
NC_015703.1\|WP_013928339.1\|3050570_3053516_+\|glycoside-hydrolase	gnl\|CDD\|375009	pfam17132, Glyco_hydro_106, alpha-L-rhamnosidase.	9.32883e-132
NC_015703.1\|WP_013928355.1\|3078118_3078541_+\|hypothetical-protein	gnl\|CDD\|376805	pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase. This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN is implicated in the conversion of hydrogenobyrinic acid a,c-diamide to cobyrinic acid. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis.	0.000815856
NC_015703.1\|WP_013928345.1\|3062487_3063477_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	3.08073e-90
NC_015703.1\|WP_013928338.1\|3049541_3050561_+\|hypothetical-protein	gnl\|CDD\|350108	cd08994, GH43_62_32_68_117_130-like, Glycosyl hydrolase families: GH43, GH62, GH32, GH68, GH117, CH130. Members of the glycosyl hydrolase families 32, 43, 62, 68, 117 and 130 (GH32, GH43, GH62, GH68, GH117, GH130) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases (EC 3.2.1.37), beta-xylanases (EC 3.2.1.8), alpha-L-arabinases (EC 3.2.1.99), and alpha-L-arabinofuranosidases (EC 3.2.1.55), using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32 comprises sucrose-6-phosphate hydrolases, invertases (EC 3.2.1.26), inulinases (EC 3.2.1.7), levanases (EC 3.2.1.65), eukaryotic fructosyltransferases, and bacterial fructanotransferases while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), while GH68 consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10); beta-fructofuranosidase (EC 3.2.1.26); inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Members of this clan are retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) that catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. Structures of all families in the two clans manifest a funnel-shaped active site that comprises two subsites with a single route for access by ligands. Also included in this superfamily are GH117 enzymes that have exo-alpha-1,3-(3,6-anhydro)-l-galactosidase activity, removing terminal non-reducing alpha-1,3-linked 3,6-anhydro-l-galactose residues from their neoagarose substrate, and GH130 that are phosphorylases and hydrolases for beta-mannosides, involved in the bacterial utilization of mannans or N-linked glycans.	8.16292e-145
NC_015703.1\|WP_013928357.1\|3079877_3080309_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	2.54886e-31
NC_015703.1\|WP_013928349.1\|3069468_3071178_+\|Na+:solute-symporter	gnl\|CDD\|271371	cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	7.87619e-135
NC_015703.1\|WP_013928342.1\|3057975_3059406_+\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	2.02778e-45

>NC_015703.1|WP_013928349.1|3069468_3071178_+|Na+:solute-symporter
MNSTIDTAVIFIFSAFVLVIGMLFARTGRNLKSFFAGGEAVPWFIGGLSLFMSFFSAGTFVAWGSIAYKHGWVAVTIQWTMCIGAIVTGLFLAPRWRATGNLTAAEFIRERLGERVQKTYIGIFTLVSVFIKGSVLYPVAKLVSVSLGFPLTETTIVLGLFMIAYTAIGGLWAVMVTDILQFVILTAAVFILLPLSLTKVGGFEKFTQSVPDDFFNVLHGEYTLGFVMAFVLYHIAYIGGNWTFVQRYTSVDSPASARKVAFLFAALYLISPMIWMLPPMIYRALNPGLTGLDTENAYLLICKAVLPPGLLGLMLTGMYFSTSASANTTLNVVSAVFTNDIYKGFMNPKASDKQLIKVARLSSWGFGLGMIVIALLVPAAGGIVEVVLSISAISGGPLLAPPLWALFSKRINGKTTFWITVIGLTVNLFFKVLSPWLLDFKLSRALETILGIGLPLGLLLAYELYARSKDMVSEEYEQYLATKATRKAAKLAETEEEALEIKRQNRFGMQVIAGALVFVAAMLLGLSAFATSGGRVTAGIAIVILLGALIPWNAAAKIKPEKEEPIVKV
>NC_015703.1|WP_013928347.1|3065483_3066557_+|hypothetical-protein
MTRRHFIESALPLLTLTEFSGILHEGLNLNAMMQPIEKQAVLRSDDWFIWGGGVVKKDRVYHMLFARWEKKHGFNAWVTHSEIAYATSKSPLGPWEVHGRALGMEPRKGFWDADNLHNPLIQEFEGKYYLYYSGNYGPQDGTREGWWIHRNHQRAGVAVADHPAGPWRRFDKPLIEPTPNGSDHLLTNSPTVARRKDGKYVLIYKGVSDGKMPFGGKVRMHVALGDSPTGPFLKQNGTVFGDATTQFPTDDNFIWSQDGVLYAIVKDYAGIFSKHGKEVLLLFESKDGLEWKTSKNDLVSKFELNWSDGRKTAPLHRLDQPQVWLENGKPTVLFLAVKEKQDHDDSDLSYNVQIRLK
>NC_015703.1|WP_013928345.1|3062487_3063477_+|FAD:protein-FMN-transferase
MKPLFLLLIACFPAFGQGQAGTSSEEPMIRLTGEAQGTAYHIKYRDGRQRTFQKEIDSLLADIDRSLSIYRSDSEISEFNRSMSHRFRLPHFYAVLKKSAEIFRAAKGAFDPTVLPLVEAYGFGPARRPKGAPVKVDSLLQYVGFQYITFDSVSVAKQKPNIRLDLNSIAQGYSVDQVAALLEAQNIQHYMVEIGGEVRTKGQKSNGQPWTIGIENPLMPAQLQTTLKMHDRAMTTAGNYRNRYEANGQVFSHIINPKTGEMEQSAILSVTVFAEDAITADGYDTAFFVMGLEAVKEFLRTRKDMDVYVLYTDEAGRLNTFSTEGVKNL
>NC_015703.1|WP_013928344.1|3060637_3062440_+|FAD-dependent-oxidoreductase
MKHLLRTLLLLGISLKLSAQDYVFLETESFTDKGGWVIDQQSFVVMGSSYLMAHGMGRPVKDAATTVPFPKKGKYRVWVRTKDWAPFPKGPGKFQVVFNGKPLNQVFGESGSDVWKWYPGGEVDVQNEQMNVALHDLTGFNGRCDAILFTNAPTFIPPDKLEAMTAFRKQQLKLTDAPAQADNVDLVVVGGGIAGTCAAISASRMGLKVALIQDRPVLGGNNSSEIRVHLMGDVDKNHYPKLGRIVREMDNGDPGNGNPDAKEYGDARKTAIVKGERNISLFLNTHVYKVEKNGDKIVAVVGRDIATNKETRFTGTFFADCTGDGTIGDLAGAEFRMGRESKAETGESLAADKADNFTLGTSNLWASLERDTVSSFPETPWAIQFSDEYHIDEAKADWQWETGFGNFNTITDAEKIRDHNLRAIFGNWSYLKKHKATKYAKRELAWVAYIGGKRESRRLMGDHVLTQMDIQEGKQYPDGTVTATWTIDLHFPDERNKKYFEGQEFFAGTKHIKVAPYTIPYRCLYSKNINNLFMAGRNISTTHVAFGSTRVMRTCGMMGEVVGFAAYLTKKYSTSPRGVYQEHLPELMAIIKDETPPGKP
>NC_015703.1|WP_169704702.1|3059470_3060631_+|hypothetical-protein
MQKPGYIQYRFSFPLLFWKACRNAGILCVFGSVMTAAFAQTPPNTKEYTVTINDTTEYTLQLAFDEGGQPLYYFSNLFTPVCLTGECKPVYINFYWDLLGNYTRFDFPKGAVLTRMDHKPFKSEDYEKLQDILANTHSLLKDVSMEDLVGKGTENLADSVDAKAGATLKTVKNEVIDGAVYTCYTLWHIAHGKVVTEMQRMTESFKTDALLHRFLSADNHHYQYWAMERVMDAEGIVRTDFQSDMQQVIRGKNIFAARFALQKVNASFFADSDRQQWLWETYRSAGYPLQLVMLKKMATLPLKSHLTEQAAQQVATVNREQATLLLKALAAQSTLSAQTLMILADQLSNENCAAEVYRLLEVCRPANRTIRQKMTHYKQTFHPIEK
>NC_015703.1|WP_013928342.1|3057975_3059406_+|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MTLKLFAFLVAAVAISACDLTEKPYSFVSPDQFFTSASDAEAALTAAYTPVTNLYSRVGTQLPDYSADQCFPRAVVGRDQLTVFSYDATMDLIGQYWQHCYQGIDRANQVLENVPRVVMDETRKKQILAEAYFLRGLFYFHLAKTFGDVPIKQESTKDIAGTETAKSPVADVYAFLIKDLETAVRDLPQMPRDRGRAAYGAAIGLLAKAQLYAGDHVKAAQNAQALIQSNRYSLMPNVLDLYNPLREDAARVEVIFAAEFSSLSGLNGYDLLGFYAPANSPPVFSKTAFGSAFGYHSFYRSFSNSDKRKALLDTAYVNAQGRLIGQADVTLRDRIIVKKFMDPNSNGANGENNFPILRLADVYLIAAEAEARATGPTPAAYAAINAVRKRAGLPDLTPGLSKDAFIEAVLQERSWELCYEADRWYDLTRTGKFKMVANVLNSYYPSRPVQDKHRYFPIPNIEILTNSKLEQNPAWK
>NC_015703.1|WP_013928341.1|3054879_3057945_+|TonB-dependent-receptor
MKFLPFKFLLRYSLLLLLGTQYAFSQSLTVKGRVNAENGEGLPGVSIIAVGTPIGTTTDKDGNYSISNVKSDAKLSFSYIGYLSVTETVGNRSKIDVVLKLDTKLLEDVVVVGYGTVKKSDLTGAVSSIKAAELKVTPIANFVQGLQARASGVQVTQNSGAPGGSISVRIRGNNSISGSSEPLYVVDGFPISGGDNPVAGGGSGFGNDNGNRLSVLSTLNPNDIESIEVLKDASATAVYGTRGANGVVLITTKRGKAGQTRVTYEGYAGQQQIRKTLDLMNASEFAALENELTGQNLFPNPAQLGEGTDWQKEIFQKGGMQSHQLSFSGGTEKSLFNVSMNYFDQNGIIINSNFKRGSIRVNLDNQVSRNFKIGTSLTYTYSVNNGAVSSTLADGTGGGIVLSALYAPPTESPRDAQGRPTMFTGRYLDFNNPIAVASEVLNRNTTRRLLGNIFADWTIAKDLTYRASFGGDLISDTRDSYVTRFVRAGATVNGTGGRGNNNTNTILHESLLNYHKTLGVHDFNVTGVFSTQSQTQVTDAMSGQQFPNDLVFNDNLGQASILSIGSNKQQWRLDSYTGRINYNLKSKYLLTLTARVDGSSRFGANNKYGFFPSVAGAWRISEEKFMQNQKLFSDMKLRVSYGITGNADIPLYNSLARLSSVGNYNFNNTRNIGILSANIANPDLRWEKSGQADIGLDFGMLNNRLQFTIDAYQKKTTDLLLSRSVALSSGYGSVFGNFGAVENKGIEFSVTANIANNSNFKWDINGNISANRNKLTLIDGTRTEIIPGDGGGSVGPFTNNSILKVGQPLGSFYGYIFDGLYQTGENIPTGRVAGNIRYKDLNGDGAISAADQQIIGDPNPDYYFGITNNLKYKGFDLSVFVQGVQGGQIFYVQRLRMEGGAAGFNQFATMVNRWTPTNPSNYYPRVAQGQRINQSDVLIEDGSFVRFKNATLGYTVPAKGKLSWLNNARLYVSANNFLTLTKYSGYDPEVNTAGQNNLNLGVDNIGYPIAKSLIAGLQITF
>NC_015703.1|WP_013928340.1|3053528_3054542_-|LacI-family-DNA-binding-transcriptional-regulator
MKKHQITIVDIARQLNISKSTVSRALTGHPRVSEKTKEAVLKLAGELDYQRNMLAINLMSSQSHTIGIIVPEFVTSFFPMVIMGAQEVASKAGYNVLISQSNESYETEVANAKVMLDNRVDGVLVSLTRETRNYDHLNVFQRKGIPIVFFNRVCDDMQVPKVVVDDYEGAFKAVEHLILTGRKRIAHLGGPTSLHVSKKRLEGYKDALRKYSQPIDQELILDYDLNLDKVKIYIKHLLDLPQPPDALFTINDPTAFEAMLFMKAKGIKIPEQIAVVGFSNNYGSTLIEPRLTTVAQPTHEIGQVAAQLLLDQINSDASEWKPIYRVLKTELLVRGSS
>NC_015703.1|WP_013928339.1|3050570_3053516_+|glycoside-hydrolase
MKKCIGVILWMVLGGQAVAQERRPDLENRFLNPPASVKPYVWWHWMGPNFSKTGITKDLEAMKAMGIGGATIFNLASAVQETHAPTLNNPWPEQTYRSPAYWEAIRHAAAEAKRLGLEIGLHNTAGYSTTGGPWVTEERAMQKLVWSKKTEEGGKILLLNLPKPELPIFQGWGSPKNRATFYKDVAVLAVPVGTGIRVNQVIDLSSKMDANGLLRWEAPAGQWLIYRIGHAPTMANPHPLPDDIIGKSLEVDKMSAEQNRFHWQTVIDPLKEKIGEYLGDSFKHLLIDSYEADFQNWTPAFRAEFFKRKGYDPVPWILCFDTKADKKPFILENEEQTQRFLWDFRDVVNQLFFDNGWGIGKKGAQESKLALQFEPYEGPFDIAEGSALADLPMGEFWTHRGGIDERIAAAARAAGRTVVGAEAFTGRPEVSQYTEDPAFLKPTANEGFAAGVNRLILHHWVHQPFDDKYQPGMGMGWWGTHFGRHQTWADPGKAFISYLSRSQALLQYGEEVGDYLCLESLQGFGDLISKRDFIKQKITVVQGKIKLESGRVYPFLMLPNTPEMPVEVAEKIKNLVAGGATIVGAKPLRSTGLKDYPECDTQVAKIGNEVWGSGKKYGKGNVCATLEEAKRLHGIKPDYVIEKADSAQAVKVIHRTGSEGDVYFVTNLSKRAQQITVSFRISGKQPELWQAENGNIANAPVWNEKDGRTSVQIRLGDYQSAFIVFRKPSSKTDHVTFINVENNVEDWTVLPQREGGPNVLFSKTPLKASLGYASGKTRDVKVSGATEKQLTGPWEVQMKPKLEAPFTLTLADLVDFSQHSDPRVKYFAGTATYLKTIQLEANALRPDKRILLNLGVLNDIVSVKINGKDLGVLWYPPYQTDITQAVKAGGNTLEIAVTNNWANRLIGDEREPADFEWGTDRGEDKGRAMKAYPDWFIKNEVRPSQGRKTFSIWYYYRKDSPLKPAGLVGPVRLELMDTKAI
>NC_015703.1|WP_013928338.1|3049541_3050561_+|hypothetical-protein
MKKILIFSLLSGFLNVVAQDLDFSKMIQPVPQSAKFEDKGYMVWCGSMVKGDDGKYYLFYSRWPQSKKHLAWVTDSEVALAVANAPTGPYKFVKVILPKRDKKYWDADVTHNPTIHKFGGKYYLYYMGNYGNGEWWDHRNHQRIGVAVADLPLGRWKRSDTPLVDTTPNAFDHLLTSNPSVAQRPDGTFLMVYKAVSNGKMPFGGRVLHGVAIAKHPEGPFVKQPKPVFVKDTVKFAAEDPYIWFQEGKYWAIVKDMKGVFTNVGTSLALFESPDGLDWKPAKHTLVSTLEIPWQSGTEKVVKLERPQLYFENGKPTLLFCAVYVSETVNYNVAIPLKN
>NC_015703.1|WP_013928350.1|3071481_3073491_+|beta-galactosidase-jelly-roll-domain-containing-protein
MKLVCLFLLVSITALGQYTLRQPEAVPLHGQWSFAMDPREVGDARGWFKDNYNANGWDKVTVPHCFSADPRYQFYTGTVWYRKTFPWQPQKGKRVILHFDAAYYKSDVWLNSQKVGTHEGGYTPFHFDITDFLKSGDNVLAISVNNDTWQTGSIPGAKDNGNANDPFPGWINYGGLIRPVYVTVESEVYLENLKVEATPDLAKGTAAIRLKARVRNASEQAVTPKLTTVVSLNNQPLKLVWKTTSPSVGAGQAAVLEAETALKSGEVKLWSLDDPTLYQLQAALNGDTLSTHFGIRKVEVQNARLLLNGQPIRLAGGNRVVDYPGLGSLEPDWLVEKDFRLMKEAGMEFHRLTHYTPSEAFYEWADRYGMLIITEPGNWQLTPTQMDNDTIRRKFQQQFREMMERDWNHPSVIAYSVGNEYLSETPSGQRWTKDMMVFGRSLDPTRLYTFASMRLNILPAKPEDEATQYCDFVSTNTYGNHAKVFDHIHALYPDKPILISEWGTRADNATGEAGQVIHLESVMAEIRKRPYIIGASWWSYNDYQSRHAGTNPNGYRPWGLVGPERAPRPLYAAHRREMSPVTLEKVSYQAGGQGQHQLVVRVKARNDFPAYAVKKYVLKTNGNTSVIPDLQPGQSAEMKVPVRGFEKSIQLQVLKPTGFSVVSETFELK
>NC_015703.1|WP_013928351.1|3073620_3075972_+|FAD-dependent-oxidoreductase
MIKAEATAKRAPKSVVYNTDLVVVGGGLSGVCGAITAARAGIKVALVTDRPVLGGNASSEVRLWVLGATSHMGNNNRWAREGGVIDELLVENMYRNPDSNPLIFDTILLEKTISEPNITLLLNTSVYDLEKSSPDTIAKLYAFCSQNSTQYELVAPLFCDASGDGIVGFLAGAAFRMGAESREEFGEKFAPSKEYGELLGHSLYFYSKDAGKPITYVPPGFAHDVTQKVPKFRSFNTQEFGCKLWWIEYGGRLDTVHETEAIKWELWKVVYGVWNYIKNSGRFPEAENLTLEWVGHIPGKRESRRFEGDYMLIQQDIVEQRTHFDDVAFGGWSIDLHPSDGVFSEIGQSSCNQWHSKGIYGIPYRCFYSKNINNLFMAGRIISASHVAFGSSRVMATSAHGGQAVGMAAKMCIEKGLLPRQLSEPQHIAFLQQELLKTGQHIPNVILEDSQDLVQKATISASSELVLEELLPAGEPQRLEFSVAQMLPVCSSGCTILTKKEGDLQSPKIIKTILHPYADEPTELEIELRISSRADNHTPDVILEKRTIALQKGRNCVHLEFDLMDALKDYPDLESVGYAFLVLQKNEKVKIQYSDQRITGILSVFNTINEAVSNYGKQEPTEDIGVDTFEFWCPQRRPLGKNLALKVEPALPAFQAGNVRNGLQRPTRQPNAWVAAYEDKNPFLLLKWAEKQRISEIVLHFDTDFDHPMETVLMAHPENEMPFCVKNVRILNDKKEVIAEIKNNHQSQRRIVLAQPVDTQSLTLQIEHPSALVPAALLEVRCY
>NC_015703.1|WP_013928352.1|3076112_3076688_+|DUF4142-domain-containing-protein
MKTKLIWVSALVLMWGFTACNSSENKDTTDSTADTAVMSSDSASDAQNEDTEFMNEAASGGMMEVELGQLAANKAVSADVKKFAQMMVDDHTKANNELKSLAAQKGITLPAMLMEKHQKMVNDLTAKTGKEFDKEYMNRMVDDHKEDIDAFEKAADNGNDADIKAFAAKTLPTLKHHLQMAEQTEKKTDKM
>NC_015703.1|WP_013928353.1|3076728_3076932_+|hypothetical-protein
MPWTKDDFPPSMKNLMKPVRDKAIEIANALLEEGREEGSAIAIATAKAEEWAENRGKKVKKESDSEK
>NC_015703.1|WP_013928354.1|3077229_3077766_-|hypothetical-protein
MQTNTSEKNRHLTGMFKDRESAEKAYNSLSERGYTKDDVNLVMSDETRKKYFNKDNDNDTELGDKAMEKAGVGSAIGGTAGAIIGAIAAIGTTLAIPGLGLVIAGPIAAALAGAGAGGLAGGLVGALVGSGIPEDKAHEYEKGIKEGGIFMGVKPKNEEDARYLNETWNKHQGHQIHY
>NC_015703.1|WP_013928355.1|3078118_3078541_+|hypothetical-protein
MKEQYEEKTVVGILQDLQERGYTIDFGTESSDEFMEKVMKAEKHHYAPAENEHQLVDLYVREVHRIEGMSNPSDNAIIYAIETAKGDKGFLLNAYGVYSEDKQAENESVTPQQVSSENVYDNNKPGEAAQEDTPIDIAVI
>NC_015703.1|WP_013928356.1|3078707_3079739_+|glutamate-5-kinase
MSKPILVLKFGSAAITKGNGELNQLVMVEIARQVAQLYAEYHLVIVSSGAVAAGRQYIRHYAGEIAQRKAAAAIGNLLLLNKYAQFFAPYEIPVAQSLCERGHFANRDQFLQMKETFQELWDNGIIPIVNENDVVSSRELKFSDNDELATLIAVGFGADTLMLCTSVGGLLDDRGTIIRKVAQVNDVFKYVRTDKSSVGLGGMTSKLTFAKLAMRMGIRTIIFGMAEPDSILRALREETGTVFAPQESALSARNRWLGSGSLVAGRIRIDSGAAQALQNRKSLLAVGIKEVEGDFEAGEAVEIVDEEGASVAVAKAKEASGIITKNLRTQNFEVANANDIVLL
>NC_015703.1|WP_013928357.1|3079877_3080309_-|Hsp20/alpha-crystallin-family-protein
MATLVKTNGNFPTLFGNVFGKDMNDIFAPATLSNYGVPAVNIAEHEGGFRLEVAAPGLKKEDFKINLENNVLTISAQKEQKNEESTEKYTRKEFSFTSFRRAFTLPNTIDSEQINAAYTDGVLKIELPKKEEAKKTPRTIEIG
>NC_015703.1|WP_169704704.1|3080364_3080700_-|hypothetical-protein
MSFSLRNFSSSPPPALHVLFIKARSLIKGQHKDAYPHVTAASVPNAPTHTKRHYVTKKLSKNQQLRHFVITKNSLKNPPSDIITLIINALFKNMQISLLFSGAGGTKVDTI
>NC_015703.1|WP_013928358.1|3080775_3081120_+|RDD-family-protein
MDKSQLAGFGNCLVAQIIDSIILGIAFSLLLIPFGGIAALIGLNSDSMENSSDEAAAALIGLAGVSLAGLILFSLIAPFIYEALMISSAKQATLGKIIMKIKVVGPAGERLTFG

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Crispr_ID: NC_015703_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_7

3252734-3252840

Orphan

Consensus_repeat	Method
ACCGTAGGGGCAGGCTTTACGTCTGCCCGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_7

>merge|NC_015703|7|3252734-3252840|CRISPRCasFinder
ACCGTAGGGGCAGGCTTTACGTCTGCCCGGTTGCGTCAAAACCGGTGTTGGAGTATAAACCAAAAATAATAAATGTACCGTAGGGGCAGGCTTTACGTCTGCCCGGT

>NC_015703|7|7|3252734-3252840|CRISPRCasFinder
ACCGTAGGGGCAGGCTTTACGTCTGCCCGGT	TGCGTCAAAACCGGTGTTGGAGTATAAACCAAAAATAATAAATGT
ACCGTAGGGGCAGGCTTTACGTCTGCCCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013928508.1\|3261103_3261877_+\|NIPSNAP-family-protein	unknown	unknown	gnl\|CDD\|311781
NC_015703.1\|WP_013928491.1\|3239106_3240387_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_015703.1\|WP_013928504.1\|3257462_3257741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NC_015703.1\|WP_013928495.1\|3243925_3244159_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928499.1\|3247901_3250481_-\|carbohydate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|119337
NC_015703.1\|WP_013928506.1\|3258430_3258682_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378587
NC_015703.1\|WP_013928502.1\|3253055_3255467_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928505.1\|3258063_3258351_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928496.1\|3244249_3245413_-\|DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380485
NC_015703.1\|WP_013928503.1\|3255711_3257265_+\|calcineurin-like-phosphoesterase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379837
NC_015703.1\|WP_013928493.1\|3242977_3243133_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_169705104.1\|3261970_3264070_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|199838
NC_015703.1\|WP_013928494.1\|3243286_3243700_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_052308841.1\|3260530_3260983_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236901
NC_015703.1\|WP_013928511.1\|3266707_3268123_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143452
NC_015703.1\|WP_169704714.1\|3264425_3266633_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_015703.1\|WP_013928497.1\|3245472_3246726_-\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NC_015703.1\|WP_013928498.1\|3246911_3247760_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_015703.1\|WP_013928500.1\|3250581_3251679_+\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NC_015703.1\|WP_013928492.1\|3240480_3242643_+\|chondroitin-AC-lyase	unknown	unknown	gnl\|CDD\|238517

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013928508.1\|3261103_3261877_+\|NIPSNAP-family-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	2.38541e-12
NC_015703.1\|WP_013928496.1\|3244249_3245413_-\|DNA-binding-transcriptional-regulator	gnl\|CDD\|380485	cd01543, PBP1_XylR, ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.10451e-120
NC_015703.1\|WP_013928497.1\|3245472_3246726_-\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.59981e-99
NC_015703.1\|WP_013928499.1\|3247901_3250481_-\|carbohydate-binding-domain-containing-protein	gnl\|CDD\|119337	cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NC_015703.1\|WP_013928506.1\|3258430_3258682_-\|hypothetical-protein	gnl\|CDD\|378587	pfam11190, DUF2976, Protein of unknown function (DUF2976). This family of proteins has no known function. Some members are annotated as membrane proteins however this cannot be confirmed.	0.000575016
NC_015703.1\|WP_052308841.1\|3260530_3260983_+\|ATP-binding-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	8.55143e-18
NC_015703.1\|WP_013928491.1\|3239106_3240387_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	4.35118e-33
NC_015703.1\|WP_013928503.1\|3255711_3257265_+\|calcineurin-like-phosphoesterase-C-terminal-domain-containing-protein	gnl\|CDD\|379837	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase. This is the C-terminal of Calcineurin-like phosphoesterases. It is around 150 residues in length from various Bacteroides species. The function of this family is unknown.	2.74735e-39
NC_015703.1\|WP_169705104.1\|3261970_3264070_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|199838	cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase. This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.	0
NC_015703.1\|WP_013928511.1\|3266707_3268123_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143452	cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.	0
NC_015703.1\|WP_169704714.1\|3264425_3266633_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.6417e-15
NC_015703.1\|WP_013928504.1\|3257462_3257741_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	2.85736e-05
NC_015703.1\|WP_013928498.1\|3246911_3247760_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.4791e-56
NC_015703.1\|WP_013928500.1\|3250581_3251679_+\|DUF1624-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	8.4283e-53
NC_015703.1\|WP_013928492.1\|3240480_3242643_+\|chondroitin-AC-lyase	gnl\|CDD\|238517	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates include chondroitin, chondroitin 4-sulfate, chondroitin 6-sulfate, and hyaluronic acid. Family members include chondroitin AC lyase, chondroitin abc lyase, xanthan lyase, and hyalurate lyase.	8.37056e-114

>NC_015703.1|WP_013928500.1|3250581_3251679_+|DUF1624-domain-containing-protein
MSPQTNRLVSLDALRGFTIAAMLMVNFPGSEEYVFFTLRHTKWNGLSFTDLVAPIFLFVVGVSIVFAYSKRKWDGRPTGELYRKIIIRSLKIFAVGMFLNLMPTFDFSDIRWTGTLHRIAFVFLGCAVLYLNTNWKQQAWVGAVILVAYWLALTLIPTPGIGKVMLEPGVNLVAWFDTQFLPGKMWQGTWDPESILSTFPSIVSGITGMLAGQLLQSTFTPNEKVNYLMTAGVFSAALGYFWGLGFPVNENLWTSSFVLVTSGFACLLLGALYFMVDILGKTKGTLPGIIFGANAIAVYVLGDILALFFYGATFGEYSLNEHAVNGLITMGVAPNLASLLYALFFVSVNFLPAYLLYRKKIFIKL
>NC_015703.1|WP_013928499.1|3247901_3250481_-|carbohydate-binding-domain-containing-protein
MRNILYSAFLSLTIISLKSCKSAESSTFDQAGRVAVSWEAVSNFAGPNDVFEAKFYLKNNGSLTLGDSSWALFFNMAPRPLLPHPTPQPAQLEHINGDWYKMTPNKGFHLAPGDSLTVSYKGTEGIIKETDAPLGLYFVFYDKEGKETQIVQLDPCTVVPFTKKEQLLRGPNDQDPILTHEYQYKENLGVSPVNADQLLKVIPSPVKVTAGKGTYTLTAATAIHYQNGLESEANLLAQRLKELTGNSFSVKNGAPAVNAISLQTGNIVVNGIRKEAYHLSVSDKGVSIIGSDAAGVFYGTQSLAALIPTKAFVQKAPSVGLEYVQIEDAPRFHFRSMQLDVSRNFQTKESVLRLLDVLAFYKLNHFLLYTTEDEGWRLEIDGLPELTQVGAQRQHISSYKNAALHPGYGSGPVAYDKGKHGSGFYTKADFIEILQYAAARHIKVIPEVNLPGHAHAAIKAMEARYERLMKEGKEKEANEYRLIDPDDRSVYVSAQGYKDNVVDVTRESTYHFYEKVTDEIIKMYKEAGLTLDLFHIGGDEVASGAWTRSPLAQELLKKDPSIGNAYNLHPYFIRRLLPMLQKRNLQIHGWEEVAMIKGKDGALKVNPEFAGKNVVPYVWNNVYDPDMGYKIANAGYPVVLCNVTNFYFDLAYNNDPKEPGLYWAGFVDTRDNYTFAPYDMFKTTYTTAMGKPMVFDNVVKLKPEARKNIIGVECQLWSETVKGRDMMEYYTLPKLMGFAESAWSAERPWETIEDKTTREKVIQTGWNVFANTLAQKELPRLSYLNGGYTYRVPLPGALVENGMLKANSAFPGLTIRYTADGSEPNEKSTEYKGPINVTGTVKLKSFDAAGKGSRMVSVQ
>NC_015703.1|WP_013928498.1|3246911_3247760_-|ROK-family-protein
MTIGVDLGGTKIKAGIEKNGSIIHQNTIFLRQKESLSATLSQLIDLIKPLTHYPATGIGIGVPSVVDTERGIVYNVANIPSWEKVALRDILEEEFNLPVFVNNDVNCFTLGEHRFGVAKDFDSVVGMTIGTGLGSGIIIDNQLYTGHNCGAGEIGMLPYRDHNFEYYACSNFFDGIHGTSALEASHAAVAGDKQALGLWSEFGVHLGCAIKAVMYVFDPEAIILGGSIAKAYPLFKAGMLEALNDFAYPQSLKRLKIMQSQDDTISLLGAAALVSQEVKVKV
>NC_015703.1|WP_013928497.1|3245472_3246726_-|sugar-MFS-transporter
MKSNTFIVILIFLIFFVISFLSNILGPIIPDIVDSFELSIGLAGFLPFAFFVAYGVASIPSGILVEKYREKKVLLWAFMMAFGGALLFAVMPTFTVALLSLFIIGIGMAMLQVVINPLLRVAGGETNFAFNSVMAQLFFGGASFLSPMLYSYLVLNVHSDTVSNTFINTLNQIVPADLKWVSLYWVFAVVAFLMVVVIWFIKFPEVELKEDEKIDTENAFKDLLKNRYVFLFFIGIFCYVGTEQGIANWTSKFLQTYHNVDPAIEGASVISYFWGLLTIGCILGLVLLKIFDSRRVLILFTIGAIVSVVVGLFGPLEAALYAFPLSGFCASVMWSIIVSLALNSVPYHHGTFSGILCSGIAGGAVVPLIIGGFAELVGLRLAMLFLLITLGYILSIGLWAKPLVTNATVKSWKELFS
>NC_015703.1|WP_013928496.1|3244249_3245413_-|DNA-binding-transcriptional-regulator
MYKIILLIDFAEEYSKGLLKGISKYSKEHGPWIFCRMPLFQRETIGIDGILEWALEWEADGIIGQLYNDPKISKIVEAGIPVIAQDFKERFKEIPNITGDHYEAGKMGAEYFLRKGFKNFAFYGFKDIVWSRERADGFEDRVKKAGHQVHYFEHIMARSSELWYYKPSPLSQWLKSLPKPIALMTCDDNQGQHITEACRQSNIRIPEHVAVLGVDNDEMICEFSDPPLSSIGQDTERGGYDAAKLLHHMIEHGTADYYDIIVKPTQIITRQSTDIYATNDRYIASSLKFIHQNIDKNLQVEDIVKQVPLSRRALEQRFQDITGYPIYKYIFNLRIEKFTQKLIETDMTVFEIALEMGLTDSKNIARQFRQIKGCTPIEYRNRHLAGK
>NC_015703.1|WP_013928495.1|3243925_3244159_-|hypothetical-protein
MSTLELKAEIHKKIDALDNVSELIDLNLSLDWFMQEKLTDEEKTALERLNQAKKSAEEGTGILHDDVMKEAKQWLKR
>NC_015703.1|WP_013928494.1|3243286_3243700_+|hypothetical-protein
MEDIEKQRIIDENGKQRWEQLEDPRIKATVMIILKEYLEDNIYLSLIYVCSRDKGMDRARNILFNKWFNEAKSEQNYFPNIPISKHNNSFRVNIHDKHLTYATLLTPETCPYQKQIEEAFMDYHKSLIKRSFYYQQK
>NC_015703.1|WP_013928493.1|3242977_3243133_+|hypothetical-protein
MKAVPTPKKITSARGNAPFIKDMVDDKKIIFAYFRGEISIDELNARGIKLG
>NC_015703.1|WP_013928492.1|3240480_3242643_+|chondroitin-AC-lyase
MKPITHTFFIVFLCGAVSVFCNAQNKDLETIKRRIVTELMSSNVSDKAIEAIMAKMNDDGSFQGINYADLSRTASFPHGGHTRDLVYLAKAYKSKTSVFYQNKKVKDLVTKGLEYWVKHDFVGENWHDNQITTPTNLGNLMLVIGDELPKELVEKAQPMIGRANMSASGARQSGDRIVIAGILAKNLLFRGDANEFDNIIRIIEGEMKFATGERGIQHDYSFHHRVDRVNNTSSYGYGKYANAYGEWSFYVAGTKYQFSKEKINQLVDYYLDGIYKQMVYGVYEDISVKNRSISQKVSGFQPQSTLEIERVLVSTDYRKKELEEIIRLRKGEAKPSQSFAKFFWQTEHFVFQRPGFYTTVRMFSTRNRNMEEPYNGPGKTTHHRADGTNYLMLKGDEYHNIWAVYDWQKISGTTIMQKPKLYGPEDIQKEGLTNFVGAVTDGLYGAVAFDFKSPHDLTEAKKSWFFFDEEYVCLGTNIKSKPDLPVATTINQVLMRSDVTVMQDGTKKILPQGNRVAEKVKWVYHDKVGYIFPEPTTLHLSNQPETGRWSDITDQKNISTEVVKENVFTLWFNHGNKPNGASYQYIVVPNVSEQQLAGSANRSIEILSNTPDLQAVKHRNLGIIQLAFYKNGEVEIAKGAKLRMDSQGMAMLKLNGNRLKELTLADPSRKLSRMSVTVPGIYTAKGEGYFSVPDSKQNTTLLVVDLPQGVYAGKSVSVKL
>NC_015703.1|WP_013928491.1|3239106_3240387_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MKLHNTHQLSDEMLTIAGEVPNWVVRAGAGIFSGIFGLFLIGTWVIKYPEVLKGNAVVTTQVPPIRVVTRSGGRMIRLLAKDEMQVTKGQVLAEIENTTRLENIPTMQRLIVEAKQFLQDTQRPISFPTTNFVWGDLQQDFLLLRQSYLDLKRLQADRHLHDQLARLHQQAEELRQMTALNERQKALHEEEFKNTEEQFKSDEKLYKEGVYSKMDYLKTKNKYIEKQREREDFDKRSIDNRIKINELEQTAEQFNYTHVEKTRQCLDNIGRSIANIENSLRNWQQHYLITAPADGKLVFLKNLTENQHLTASDTLFAVMPSQSQFIASVDIPVRGMGKASVGQKVIIKLDDYPYQEFGMLEGKVLSMAPSLSVRSYRVVVALPHGLHSTYHQTLYCRSEMAGTAEIVTADLRLIERAFYGIRKLLM
>NC_015703.1|WP_013928502.1|3253055_3255467_+|hypothetical-protein
MNKSVLFFLCVFCFRSIAQTIDISEARIYTSVTDKQVLRRSVEVLQQEVKKRSHLDWPLLTKLPSDGKPYVGIALESDLSGFPIRVREEIRKLPVINAEGFKLLVIPETKAVFVVGKDARGILYGVGRLLRKMEISHTLVSISDKLSMATSPKYPVRGHQLGYRPKTNAYDAFTVEQFDQYIRELALFGANSIEIMPPRTDDDATSRHMKLPAIKMIGEQARICKEYGLDVWMWYPNMGSNYTHPDSIQKELKERHEVFSSVSPLDHVFVPGGDPGDLEPDVLFAWLEKMSVVLKKYHPKAKIWVSPQVFRPTKKWFDAFFGHVNKNYPWFGGVVFGPWVKMPVQEIRRVVNANIPIRHYPDITHNYSAQYPVPHWDLAYAMTLGRESINPRPHDEKVIHNALDEYGVGSISYSEGTNDDVNKFVWSDQDWNPDTPVIETLRDYARLFFGPEYQESAAQALISLENNLKGPLLTNEGVARTLMQWQTIEEDASPELWQNPRFQMGLIRAYYDAYTRRRLLYETEVEQEAKDILGRIRSGSSLANIQRAKAALEKAWQWPILPEYRRKCFVLADSLYRSIGAQLTIAKHGAMSGRGNFLDNIDIPLNDAPYMLDQLTKIEKLSSESERLQKIDQLLRRTDPGPGGFYDHFGSPESWYRVVSDIPWEKDPGSLQSPRIGFGVGLVGEEWVDEIKATGFKGQVTPRVWMKQAKTLYDQPLKIAYTELDPQSSYRMKIAYTGRFRSRMKLTTDDGSVIHDFLQTGEQPLFEFDVPQKATADGKVTFIWNCGEGERGSQVTEIWLMKK
>NC_015703.1|WP_013928503.1|3255711_3257265_+|calcineurin-like-phosphoesterase-C-terminal-domain-containing-protein
MKHLLSILCLFVTQVVCAQTTAVGTVYHDLNKNGRKEAGEPGIAHVGVSNGKEVVKTDKNGKWTLPVGDDTGFFVIKPAEYAVPLTNDQLPKHYYLHKPNGSPSTKSEGVAPTGALPNSIDFPLWKQKTENRFSVLLFSDSQTRGLAEVNHVTHDVVEECIGTRARFGISLGDIVADDPNLFAEVNGSIGQIGVPWYNVFGNHDFNRGATNDQFSDETFERFYGPSTYAFEEGQVAFIALKNVYFSPDGKYKGHFTETQLAFVKNYLAQVPNDKLVVLLMHIPIVICDNRTELFQLIENRPHTFSASGHTHTMINLWVDEKYGWKNAVPHHHFVNATISGSWWCGLKDETGIPHATMNDGAPNGYSILTFDGNQYSVRFKAARRPDDYQMNIYWPDELTKAALDTTHLRVNVFAGSSRSKVEFQVAGQTTWTPLQLTPQRDPSIMTMHRQSPYLEATVNGTKLDEVFGWSMDKPGISTHIWQGNLRADLVTGTYRIIVRTTDAFGQMFTAHRIFRVK
>NC_015703.1|WP_013928504.1|3257462_3257741_-|hypothetical-protein
MENNKNSGNQNRDSEQRNNQGDKSQQGQEGQTQRQSSGNSGTGQQEQRQGGQGQGSQQRNQGNQNPDQESWNDSGSELDQPGQSQSERNQRR
>NC_015703.1|WP_013928505.1|3258063_3258351_-|hypothetical-protein
MKPEKIAALTDTELLKRKKVLQSTHTFIVATGIVALLVLCMMFGYSVGKDAATGGKGTFYYKPLIPFLLFFIIGNSFISSEQKSINDEIKKRNLE
>NC_015703.1|WP_013928506.1|3258430_3258682_-|hypothetical-protein
MKKDNSFENKSLEELRATKAKYQKIAAAVAGLMTVALLFIVYVAIKTKNWGQLGTLGVIGTLLPLFVSIQNLDKEIKRREQHP
>NC_015703.1|WP_052308841.1|3260530_3260983_+|ATP-binding-protein
MLEHSRATTGERPLTDINQLAGEYLRLSYQGIKAKGNASSADYELIADENLPIVNVVPQEIGRVLRNLINNAFYAAIVVRTIRPYRKPKVCLSTQCATTSVEIRVTDNVEGIPAAIKDKIFQPFFTTKPTGEGTGPGLSWSYDQRPRRFD
>NC_015703.1|WP_013928508.1|3261103_3261877_+|NIPSNAP-family-protein
MKRRKFMAASSLLGMGAVAPALAAQSVKKNDKEVYELRTYETKMGGMGRLEAYIQTALMPALNRMGASKVGVFKEMSKDDPAKLHVLIAYSKQEQYFTIHSQLKTDADYLKAADTYLQTPPDKATFDRMSSSLMVAFDGMPKLATPSKEPRIMELRTYESYNEDAARRKIKMFNDGEIAVFNKVKLNIVFFGEVLIGPRMPCLTYMLTFKNMEERNANWAQFSADPDWKQLSGAPEYANTVSRIARVFLEPTAYSQI
>NC_015703.1|WP_169705104.1|3261970_3264070_-|PQQ-binding-like-beta-propeller-repeat-protein
MTLAGATLLLSAWYSHSDDKNRYTGWSEFLGGPERTHYSSLTQITTENAKNLRVAWEYHSGDTTGQIQCNPIMVDGVLYGTTASVQVFALDAATGKELWKYKDSKDPQWFNTNRGVTYWEGGDDKRIFFSAGQWLYALEAKTGTPITSFGENGRMNLRNGLPDSAKDKFICSNTPGTIYKDLIIMPVRLSEGPDAAPGHVRAFNVRTGKLAWTFRTIPHPGEYGYETWGKNNYKNEDVGAANNWAGMAVDRERGILFVPTGSAGYDFYGGNRPGKNLFANCLLALDAATGKRLWHFQFVHHDVWDRDLPSAPTLVTINRDGKKIDAVAQITKSGFVFVFDRVTGKSLFPIKEIPVPTNGVPGEKPWPTQPVPLKPAPFSRQTLTMDEINPFAANRDELAATLRSIRHRNQFELPSKEGTLIFPGYDGGGEWGGPGYDPETGILYVNSNEMPWIMTIVDKPKMDKLAMLPTGERAYVQYCTACHGADRKGNPKSGYPSLININTRRDRAYIHTLVSNGKGMMPGFSYLKPAEKDALVAFLFGEEKKEAGSAAVEDKFASVPYKTTGYNKFLDKDGYPGINPPWGQLSAINLHTGEYLWKITLGEFKELTAKGIAPTGCENYGGPVITAGGVLFIAATKDGMFRAFNKKTGQLLFETKLPAAGFATPSTYQVNGKQYVVIACGGTKLGTPKGDSYVAFALP
>NC_015703.1|WP_169704714.1|3264425_3266633_+|tetratricopeptide-repeat-protein
MILTLLESVSAKGIDSTNTRVSVPVKVPALVVSIPKTKPVAPPGPPAAFSEKRFKQLNNAGIQQAYQLKLQTAQSFFLQAQDHSSTNDTLLYNLSLVTGLLKNYDDALEIMAQTGVGGRYLHNKGVWEAQKGELSKSMATWESAQPTDTLLFNMALANYRQNDLQGAQGRTKRVGLTKIAEFYELSANILFRLGEYKQAEKLYEKAEKFALQTGHHAVGARLLIQRGNTHLALHEYERAEELYREYLKLKDPSYRFAAHLGLGHTLYRQRKYQLAVLEYNAACRHNDYSAEAWLSLGNAYIGTNGQRQAQKAFKRALDLDSTQKSAWLGLGMVYYRLQNFGEAVGCFDQAGDILNAGNRNHADLFAARAFCRLYTAQSKPAKEDVQTAVGLSGHGLLPCLAMSEYLRMEGLFLSSLKWLEKAIKANEGANVRMLVNRGNIYLKCREYAAALDDFTEAHRMDPGNVNAGNGLAVSLLNKDEIDRAKTLYDSLLRQQKLAMLYNNRGIVQSYLSLRERHQHNYKEESRFSALSMQDFDKALQVDSTKKPYYVNIGNVYKNRNEETLAIESYQRYLSLHAINNMGVLFAKESHRDSSWHYLDIAISYDSANVIYLYNRAKLHRDHFKNVFAQRADLKQAFKLMPTNDISLKYSRDGYVTIFLFDYDFETYHFPGDPLFDVHPQPIDHFTFLPSMDFVPMAGGGDIFKKGEGGYKITRNQMRFRPASRKSRGKTSCPKM
>NC_015703.1|WP_013928511.1|3266707_3268123_-|aldehyde-dehydrogenase-family-protein
MSAAEPTFTLELQRIFDAQRKNAATVALTTAAERSEKLKVLLDYLMAHLTDIEKAMYDDFRKPSVEVQLGEVYTITSEIKFARKNLKHWLKPQRVPTPLGMIGTANYIRHEPKGNVLIISPWNYPLALAVKPLISAIAAGNVVMIKPSELTPHTSRFIKKMVSDLFAEEEVAVVEGDAEAATELLKLPFNHIFFTGAPTIGKIVMRAAAEHLASVTLELGGKSPNIIDETADIKKVAEMTAWSKGLNNGQTCIAADYVLIHASKKEAFIEAYRKALQEMYGDGAEHSDSYARIVNSRHFNRLKDYLDDAVAKGASIVVGGKTLAEQNYVEPTLLTNINNDMKIMQEEIFGPLLPILTYRTKEEVIAYINGREKPLALYIHSRSTENIEYFLKNTTAGDTVINDLMLQFGNAELPFGGVNNSGIGKSNGYFGFQEFSNLRGVSQRQFGTMKFLYPPYTPNVRKIMDLFVKYF

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Crispr_ID: NC_015703_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_8

3659810-3659922

Orphan

Consensus_repeat	Method
AAAACGGGCCGACGCAAGGCCTGCCCCTACGTTTACATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_8

>merge|NC_015703|8|3659810-3659922|CRISPRCasFinder
AAAACGGGCCGACGCAAGGCCTGCCCCTACGTTTACATTTTACATTTATTATTTTTCTGTTTTGCGGTTCATAAAACGGGCAGACGCAAGGCCTGCCCCTACGTTTACATTTT

>NC_015703|8|8|3659810-3659922|CRISPRCasFinder
AAAACGGGCCGACGCAAGGCCTGCCCCTACGTTTACATTTT	ACATTTATTATTTTTCTGTTTTGCGGTTCAT
AAAACGGGCAGACGCAAGGCCTGCCCCTACGTTTACATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013928815.1\|3650927_3653951_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NC_015703.1\|WP_013928828.1\|3672324_3672879_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
NC_015703.1\|WP_013928829.1\|3673120_3673543_+\|DUF4281-domain-containing-protein	unknown	unknown	gnl\|CDD\|379473
NC_015703.1\|WP_013928819.1\|3659981_3660956_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NC_015703.1\|WP_013928812.1\|3647112_3648237_+\|response-regulator	unknown	unknown	gnl\|CDD\|381116
NC_015703.1\|WP_013928814.1\|3649570_3650356_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928817.1\|3657652_3658759_-\|DNA-topoisomerase-IB	unknown	unknown	gnl\|CDD\|226099
NC_015703.1\|WP_013928809.1\|3644770_3645271_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_015703.1\|WP_013928818.1\|3658775_3659639_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187613
NC_015703.1\|WP_013928810.1\|3645925_3646783_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_015703.1\|WP_013928816.1\|3654248_3657566_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|143478
NC_015703.1\|WP_169705124.1\|3661157_3662912_+\|peptidase-M14	unknown	unknown	gnl\|CDD\|349476
NC_015703.1\|WP_013928813.1\|3648353_3649133_+\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NC_015703.1\|WP_041340793.1\|3644438_3644792_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928825.1\|3669954_3670695_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_015703.1\|WP_013928824.1\|3668634_3669903_-\|DoxX-family-protein	unknown	unknown	unknown
NC_015703.1\|WP_013928823.1\|3666791_3668645_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_015703.1\|WP_013928822.1\|3664981_3666553_+\|D-aminoacylase	unknown	unknown	gnl\|CDD\|226179
NC_015703.1\|WP_013928826.1\|3670908_3671976_-\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NC_015703.1\|WP_013928821.1\|3662957_3664766_+\|peptidase-M14	unknown	unknown	gnl\|CDD\|349476

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013928815.1\|3650927_3653951_+\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.74427e-42
NC_015703.1\|WP_013928828.1\|3672324_3672879_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	2.88135e-85
NC_015703.1\|WP_013928829.1\|3673120_3673543_+\|DUF4281-domain-containing-protein	gnl\|CDD\|379473	pfam14108, DUF4281, Domain of unknown function (DUF4281). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 147 and 232 amino acids in length. There are two completely conserved residues (W and P) that may be functionally important.	2.51647e-41
NC_015703.1\|WP_013928819.1\|3659981_3660956_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	2.17491e-85
NC_015703.1\|WP_013928826.1\|3670908_3671976_-\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	5.07893e-153
NC_015703.1\|WP_169705124.1\|3661157_3662912_+\|peptidase-M14	gnl\|CDD\|349476	cd06905, M14-like, Peptidase M14-like domain; uncharacterized subfamily. A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	4.22116e-127
NC_015703.1\|WP_013928817.1\|3657652_3658759_-\|DNA-topoisomerase-IB	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	8.72186e-100
NC_015703.1\|WP_013928809.1\|3644770_3645271_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.49045e-24
NC_015703.1\|WP_013928818.1\|3658775_3659639_-\|SDR-family-oxidoreductase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.23045e-159
NC_015703.1\|WP_013928810.1\|3645925_3646783_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.57397e-22
NC_015703.1\|WP_013928816.1\|3654248_3657566_-\|S41-family-peptidase	gnl\|CDD\|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	3.38178e-77
NC_015703.1\|WP_013928813.1\|3648353_3649133_+\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	1.5996e-28
NC_015703.1\|WP_013928812.1\|3647112_3648237_+\|response-regulator	gnl\|CDD\|381116	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators. OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.66977e-35
NC_015703.1\|WP_013928825.1\|3669954_3670695_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	4.7961e-77
NC_015703.1\|WP_013928823.1\|3666791_3668645_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.81034e-41
NC_015703.1\|WP_013928822.1\|3664981_3666553_+\|D-aminoacylase	gnl\|CDD\|226179	COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism].	4.37915e-99
NC_015703.1\|WP_013928821.1\|3662957_3664766_+\|peptidase-M14	gnl\|CDD\|349476	cd06905, M14-like, Peptidase M14-like domain; uncharacterized subfamily. A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	5.16211e-142

>NC_015703.1|WP_013928818.1|3658775_3659639_-|SDR-family-oxidoreductase
MKYPENIPEQTQKEQPGLEYKMHHPAPVTIRPNYKGAEKLKNKVALITGGDSGIGRAVAVHFAREGANVAIVCTERERIDAEDTRKMVEDEGKECLTLIGDLKDPAFCRVIVDLTIREFKQLDIVVNNAGIHYEAEALTDISEEQLTETFEVNVFSFFYVIQAALKHLKEGASIINTASIVAYRGSESLMDYAATKGAIVAFTRSLSSNLASKGIRVNGVAPGPIWTPLIVSGRNPEKVKEFGKDTPMERPGQPAELGPAYVFLACEDSSYITGQVIHVNGGTIINT
>NC_015703.1|WP_013928817.1|3657652_3658759_-|DNA-topoisomerase-IB
MTAPQPISLPARHSKKHFERLNKNPQASAKSVGLVYVCDASPGFTRKRSGKSFCYYGPEGILCKDKIVLKRIKSLGIPPAWTNVWICTDEKGHLQATGIDAKGRKQYRYHPDWSRVRSAAKYHRIERFAHQLPALRERLENDLAATKLTFHKVVALAVRIIELTGIRVGNEAYKRMYGSFGLTTLEDDNIEATASKVTFSFKGKKGIYHRIPIQNSRLARLVQRCKDIPGKELFQYYDEDKNPHCITSTDINTYLHETLGDGFTAKDFRTWIGSLTAFCEFKKAGDFETQTEAKHHIKQCLEAVAKRLGNTVAVCKKYYVHPALIRAYEEHKLFKYMQDVEICAENPLGTVGLSPIEQQLCTLLKEYH
>NC_015703.1|WP_013928816.1|3654248_3657566_-|S41-family-peptidase
MRFLSLSALWIGCCSLGLQATAQGTRLLRQPTVSDRAIVFVYADDLWMVGRDGGNATRLTTHEGTESLPHFSPDGNTIAFSAQYAGNTDVYVIPASGGEPKRLTWHPGEDAVQGWTPDGQSIIFRSGRIGFPTALTKFFKVNVKGGFQEELPIPQAHAGEISPDGQMAAYQTIGFWDPEWRNYRGGQAQPIWIVDLKTLTLKTTPQTDRERHTDPVWYKDVVYFLSERDYANNVWSFNPKTNELKQVTFHKDFDVKSLDASNDRIVYEQGGYLHLLDPQTGRAKQLIINVQGDFTWALPRWQDVRPGALLNASLSPTGKRALFEYRGDIFTVPKENGDWRNLSHSSGVADRSPAWSPDGQKIAWFSDAGGEYQLVISNQDGLEKPRTIALPNPTFYFRPQWSPDSKHIAYTDTDYNLWIVNAVSGQPKKVDTERYAHPNRSLNPVWSPDSKWVAYAQLLDNQHKAIKAYNIETGAMHQLTDGMSDATSPVWDANGKYLYFLASTNFALNTGWLDMSSYDHPVSRGVYMMVLAKGEPSPFMPKSDEEEAPKAEKKEEPTPTDKSKSDDKKGKQEPKKDEKPVETKKSVVVKIDVDGLDQRILALPKVAVKNYSDIVEGPEGTLFFTESIPDQPGFTLHKYTLKDQKNEDFLKGIQFASTSADRKNLLYRSEGSWGIVGTASIPKPGDGKLNLAGMKIQIDPKAEYQQIFREGWRYQRDFLYVSNVHGAPWKEVYQWYSPWIEHVRHRTDLNYVVDILGGEVAVGHSYTSGGDFPTLDNNNPAGLLGADFVIENGLYRIKTIFTGENWNPDLRAPLSGPGIDIKEGDYLLEINGIPLTAATDLYSLLEGTANRQIKIRVGATPDVKTATLITVVPIANETQLRTRAWVEGNRRKVSQLSNGQLAYVWIPNTGNGGYEYFNRYYFAQQDKKGAIIDERNNGGGSAADYIVDVLARKLQGYFNSRANDHKPFTTPMAGLWGPKVMIVNERAGSGGDLMPYLFRQAKVGPLVGTRTWGGLVGTWDTPPFIDGGRMVAPRGGFYDVDGKWAVEGEGIAPDIEVLQDPAKAAKGEDPQLEKSVQVALELLKTQGVTLKPEPEAPIRYKRPQK
>NC_015703.1|WP_013928815.1|3650927_3653951_+|PAS-domain-S-box-protein
MTNSLDALHKGKHHVSIYMCRPIVNDYQQLKDLYIHWQNPKSAHSKQFPFVKPGAYLSELAGAGIALPNHFWDTLHNDGIAEEEFQWADYRIHLLVFATDKEYAVTLSVKPLCHYVAEKEKIALRNALFQYAGLGIALTDREGIIKSVNPALENMTGYVAEELIDKESPAFLRVPSILKKQIEELLPEQPADMQDPDTVVMTYLNSHSMLQRENTLLTKNRRYLPVLSTTTKLYDDENNFFGFVDFVADISEFKKIQRELFLANQRLKLATKAGNIGIWEYNGLTNEFIWDEETYRIHGIPPGTAVTFEDFLKLIHPEDQEYFYSRMGIQEFDSKPIRIIRPDGAVKYVKSQGIKLPGRNGMDMHTIGIVLDVTDNILSQITLSDSEKRYRFLVENLKEVVFQTDLQGRWTYLNQSWVEITGFDISSSMGITCLEFVHPDDRERNLELITGLVHQKKEYCRNEVRYMHKDGSHRWIEIFAKLTYDETGRPTGTIGTLYDISERKQMEMELTKSEQRFKAIFNSSFQFIGLLTPEGTVLEANQRALDAAGLRADEVVGKPFWETPWWGLCPLTRQRLRESIQSAAQGASIHYETDIWTKDNDIRTLDFSITPLFDHDGKVISLLPEGHDITEIKRTRAALMESEQRFREIADNVDEIFWIRNAVVPKFIYINATYERLTGKSRQSLYDDPLSFLEFIHPDDQPELLSLFNSSPDDNAIIEVRGIDKEGITRWLSIRIFVIKDGHGVIQRRIGIASNITHQKEKELLLTETLEKEKELNHLKSQFVAFVSHEFRTPLATIKSSTELIEHYLFNSSETGLDPELAARIKRHTSTIQTKIDFFDELLTDTLTINQIESGKISYIPQPSDLIAFMQTIILDFFSDRPDGRKAEFEVTGHPETVSIDEKLINRVLINLLSNAFKFSVTNPKVRLCFEEKEVKIKVIDKGIGIPEEDLSKLFTTFFRAGNVGKIAGTGLGLQISKQLVELHGGTIVVNSRQGEGTEMIITLPKH
>NC_015703.1|WP_013928814.1|3649570_3650356_+|hypothetical-protein
MKIALLTLYLVVFAFVSAHAQRNSILWTSSTGKLLHNENVLLKQKVDELNNNRKILKKKNAALYRERKMLIAKILLLKQDSVNLHLDLEKTGQEKSRLAGQYKADMQRLQTKVAQLNDSLKRYINLESEINTIKTVISDLDLAMRTYGISQNILVPKVKNFINSNRSNYNFIDGTANKVWAQESIEQVIPRRLIGQKKVHTKVNYTLIFRIHPLDPFKTLMDVRVESMKENDNDSDMQSNQMTKLQNRLLKDIDTLLRDYP
>NC_015703.1|WP_013928813.1|3648353_3649133_+|response-regulator
MANILLVEDDAELKKNIVEYFEGFNHIVNSSSNGMEALDVLDNFLPDIIICDILMPKMNGLQFLSEKKKYPLVCNIPIIFITANSSVDGKLAMLAQGAIDYISKPFELKEIRLKVENLVLFGGSFKLKDNLREATQFSENIMFKIMFEKVLLSLPENPDITIGDVAYQMNMSVSTLQRGVNRYYNKNFTDLVRERKLKRAAELLSKTDKSINEISIICGFNTLSYFSKTFKGYFRISPKKYRVEKYKEGQRPGDRNFSA
>NC_015703.1|WP_013928812.1|3647112_3648237_+|response-regulator
MNEFLNAKILVIEDEESIRENIIEMLSICGYQMSSAKDGMEGISQIMLIQPDLILCDIMMPKMDGYKVLQTLRNSATHANIPFIFLTSLSETAKIRKGMMTGADDYITKPFKFPDIIAAVENRLSRERKRKEELSDLILQYRRNSHKISSHEYNTPFGSILGFLYLLKENISEFNEEETLSMLEMMIVSCRRLKNTLDNSHLYSLLTQLDPKDTMYRQYTEGHFSVCDEWISEICQTVGHESKINLDLSVSFNITIQNAELSIAEANFRKVVMELVDNAIKFSNGTSPVHLVGLMLKDKYSLTITDRGREFKEDHIKAIAPYVQFEREKYEQQGLGLGLWISNKLLQLNNGRLTVSSLEGFTSVTVEVPLVYFQ
>NC_015703.1|WP_013928810.1|3645925_3646783_+|helix-turn-helix-transcriptional-regulator
MSTLSPIKSASRKAIIDLEDGLKVEIIFLKGKLYPMEESTAGFCLWESSKVACFYDIEKKVVVKNHFVSYNNELFKVECGKKSRKTILMKILFSDDWLRKNKIYTVVFESKHISLADSFPLFFQTVSRNIYKLLHTTDFESIKHSLSIKSYLFNHINSIVEILNNPKYLNGDEIKIKWVIDNFFKPFESVMPTIPDIADKLSMSESKFKRIFKRKIGVSFYHFYLRKSMEQAEHWLLYENLSVKDISYNLGYSQPVSFINQFKKTFGYPPLQYKTKRCGLPAFNN
>NC_015703.1|WP_013928809.1|3644770_3645271_+|helix-turn-helix-transcriptional-regulator
MSPNKSLSLFSNFLDDNLLSLFEKWKTYEIVNSADFVSSIKRYIEIYCNELKKIRNPDTNSAIIDFIIKNFVYEFDSPHLRIEEICELLNVTESKFKHLFYKEIGVSFYQYCREKRMQQASEWLMSGELNVKNISAKFGYGHPKTFISEFKSYFGRSPMQYVKYYR
>NC_015703.1|WP_041340793.1|3644438_3644792_+|hypothetical-protein
MIILDHLCSVGSSREIEEGIYAECIINFNKYTHDSCKFDGFYVWELSRFVKVSKEDNLPEIQKKCISSGGEKMQFSLLSKSIPVNIIKISISNEWCQSKGINDIIQTSKFFCLPINH
>NC_015703.1|WP_013928819.1|3659981_3660956_-|ABC-transporter-ATP-binding-protein
MSFFQLHSVSKIYHSQWVVKDISFALSQGEIFGLLGESGSGKSTLLRMAAGLLDADEGYVSLQDQPLRPASDQLIPGHPDIKIVHQDYNLSATLSVRENINYALRYYEKAYRDERVDELLQLCQLEAVAEHPAKSLSGGEKQRTAIARALAEEAKVLLLDEPFAHLDLPNRHRLTDTLRELAEHTGIACIFVTHDPNDALSLSTRMGILHHGKLIQLGTPETIYHFPANAYAAELTGEVNLLNADFFRNSVGSYATLPDGRLAVRPEKCILSPSPTIYGIEAVVKRVVFAGSHYTFYLQAGTQLLKVYHHEVLPLDKSVFVDLR
>NC_015703.1|WP_169705124.1|3661157_3662912_+|peptidase-M14
MRQLLYGGVLVLACVAQTLEAQTTYNSHAQLSGRLKTLTAKYGALASVSSIGKSAGGRDLWLLTLGKGDAAKKPAILVVAGLDGTHLAGSELAVQTAEKMLGAANADSIARLLDTKTFYFLPSMNPDAQEQFSAKLKYERTTNDAKTDDDRDGRLDEDPFEDLNGDGVATWIRVEDAAGTYVLSKEDPRILVKADPAKGESGKYLVYTEGIDNDKDGAYNEDGAGGVNPEKNFTFDYQIFTTGSGEYAAEAPEVRALLDFLYRAPNIFAVLTFGPNNNLSEAPRFDASKVARRILTGPLAKDAKAMDQVSKLYNTRTALKDAPAMPQTRGNFSQTAYFHAGRYSFTTPGWWVPKADTPRDTTRRAATAPATPSSTTPVAPTGGGGRMGGMMGGGAAAPTASAVSAGEDDARFLKWADKEKLTGVYVDWKAVQHPDFPGQKVEVGGIVPFAKLNPPVSYLASAADKHVKFLAGLGAQMPEIQLVNVKTETLGNGLTRVTATVVNKGLLPTYAEIGDRVRFVQKVKTELKLGAGQAIVSGKRLNLRAALASDESEEYTWLVSGTGKLTIEAGCPTAGVKSADVTLK
>NC_015703.1|WP_013928821.1|3662957_3664766_+|peptidase-M14
MKKHIHLFIYALIGCTLAVNAFAQTAPQTDPDLNGMRAIGTPANPKVKWGWNYYMDYAGFNKLMQELAKAYPDLVKYESIGKSFQGREMYVMTITDFKSGKPEHKPAFWIDGNIHANELQGTQFAMYTAWYLAESFGKMDFVTDMLKGRTFYIIPSLNPDAHENFIYKSNTTSSSRSGMMPLDDDGDGLVDEDTYDDLDGDGNIVTMRRKSPTGRYKADPDFPGRMILAKPDEQGEYEMLGFEGIDNDGDGRVNEDNPGSYDPNRDWGWGWQPDYIQSGALFYPGTLPETQNVKKFFYSHPNIAGAQSYHNFGGMFLRPPGAEEDAMYVPQSDIAVYDVIGKAGEKMIPGYKYYVLWKDLYTVYGGEIDWIGLGRGVFMFSNEINTSWRMFNKNSTENRNQNSEFEEFDKFLLLGDGYVKWKPIKHPQYGEIEIGGTKRNYIRNTPGFLLEEEGHRNMAFTMLHAYHMPKLEIIDIRTKALANGLTEVTAVVQNQRAIPTHSAHDLRFKIERPDYITLKNAQVLAGMIVENDDLGITKEQKRNPQTIEVANIPGTVGGGGGGGGFGGGGGNSVKVRWIVKGKADKWTVEVDSRKGGVISKTL
>NC_015703.1|WP_013928822.1|3664981_3666553_+|D-aminoacylase
MKHFITLITGILFAATSAFAQEYDVLIRGGKIADGTGNAWFYGDVAIKNGKIARIGSLPNATAGKVLEAKGLIVCPGFIDVHTHIEEDEFRLPTADNFIYDGVTTVVTGNCGLSNVDLGFYFKQLDSLKTSVNVASLIGHNDVRKTVMGTVNRPATPEEQQRMEALVEKAMRDGAYGLATGLIYVPGTYSTTEEVVGLAKVAARYGGVYASHIRYEGDEVLTAIEEAVNIGRQAAIPVQISHFKVSGQNNWGRSKETLAAVENARREGIDVTIDQYPYTASSTGLNTLLPSWALAGGLDSIKARVNDPIIRRRMTEEMVATLKRRKQNHFTYAVVAYYDADTTLNGKNIEEINLLKGRKHKAAAEAETIMDMALKGGASMVFHGMGDWDVENIMRYPQNMFASDASIRVYNFGVPHPRGYGTNARVLGYYVRQKKIIPLEEAIRRMTSLPAQKFNLPERGLLQPGRAADVLVFDENTIIDVSTYDRPHQYSRGMKYVIVNGETVVDNEKHTGVRAGKVLRKGE
>NC_015703.1|WP_013928823.1|3666791_3668645_+|two-component-sensor-histidine-kinase
MTLRFAFFWLFSIVSVELVAQNRMVDSLRHWLAIHPTQDSARVVTLHRLAYRLSEIDQTTAWRYANEANQLAKKLNNTTNLGQSFINYAILESLEGNYARGQEYYLTALKLFEQTGWERGIAICLNNIAENYKSMNQLQKAVDYTFRALELNKKTDQKRGMAVNHEQIGDLYRRMQRYEESLTYLEQGLVLAKQAEQNYQILPQILLSTARNYNDRREFSVALRYLEQATEQSQRHGEKLLQIQCYEETAKTFRLQQKLASAGIYLQKALETATQFGSIVEIAHINREMAQLAEIRGSYKEALAYFQSYKTLNDSIERKKNVVRAELAELKYTAFEKDKENHRLKRIKTAQEAELRRQTYWIISLALVIVGLMGVLGYAFYRNRLKQIKDAQKAQAQTIRQMQLSDRIRSQIARDLHDDLGATLSGVAMLSQAAKRQLKEKDEQLKELLDLISINSQRTVSTIRDIIWTTRPMNDSLESITAKMKIFASEMLEPKRIQYEFSIADDLKGYKLPSNQQYNFYLIFKEAINNAAKYAQATHIRIKIFKMNQQLYLHIIDDGIGFDKEVVKGSGNGLFNMEKRVEELDGSMTVKSAPNQGTAIELTLPLATPLLPIYPIY
>NC_015703.1|WP_013928824.1|3668634_3669903_-|DoxX-family-protein
MEQVITPSSKWTFIEKIGFRFFFLFFLLQIFVFPLGYLIKNGFYNDAWTWPINWAGNTFFDIPEISLRPNGNGDTSWNWIQFFLIIGLSVVGTAIWSFFDTKRLNYSTLNKWFRVVIRYYLGITMLSYGFAKVFLSQFGTMTDYRLYQQLGDMSPMGLLWTFMAFSKGYQMFTGLGEVVGGLFLFFRRTTLIGSLILSGLMSNVVLFNLFFDVPVKLFSSMLLSMAFYLAAADLKRLVNFFFLNRPVPARIYPIYSQKKWFTRSRLGLKTLIILGLSMVLLWQGIDSFKYLKAPKPAFYGPYKVSQFKRNRQEVPLTDTLRWERVFVDRRGPADMIAITNQHGLQQRTGFERDIKKKIVQLNDWLANDRKYAFTYIQPDSNTLIMKGKWRNDSLYLELKKMHKEFLLMNRGFHWVNEQPFNK
>NC_015703.1|WP_013928825.1|3669954_3670695_+|glycosyltransferase-family-2-protein
MASLSVVIITVNQEKKIAKTIEALKALTNDIIVVDSGSTDLTRKVARAAGANVLERPWTGYSEQKNFGNLWAKYDWILSVDDDEVVSPELIESIKQAFTPAPDADAYDLPFRTVFAGKLIRFGGWNPESHVRIFNKKKIQWNTDAVHEGLTLKPEHIVKKLTGYVHHYTVDTPEQFVAKTDRYSTLFAEKGRKAGKKATFVKVYLSPAFRFLVEYIIKFGFLDGYYGWFIAKENARYTYLKYKKLR
>NC_015703.1|WP_013928826.1|3670908_3671976_-|branched-chain-amino-acid-aminotransferase
MTTDTLAMEIQRVEASRIHEVDFDNLVFGRHYSDHMFVADYINGEWTNLQIAPYANLSLSPATAALHYGQAIFEGMKAYKNEAGEPLMFRPLDNWARFNKSAARMCMPEVPEEIFMGGLTELLRTDAAWIPTAPDSSLYIRPYMFSTDAYIGVKPSDTYKFIIFTGPVGKYYSKPPRVKVEQHYIRAAEGGVGAAKCAGNYGGSLYPARLAQQQGYDQIIWTDARDHAFVEESGTMNVMFVIDGKLVTPATSDTILNGVTRNSIVDIAHHWNIPVEERKVSVKEVIDALKEGRLEAAFGAGTAVVVSPFGVIGFEGTDYELPTVTDESFVSRVKAFLTDIRTGKTEDPFGWVVRA
>NC_015703.1|WP_013928828.1|3672324_3672879_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MKIYTKTGDKGTTSLVGGTRVSKADLRIDTYGTVDELNSYIGLVRDQPVNEVRREFLKYIQDRLFTIGSILASEPDNKKHFIPDLHEEDITALELAMDEMNEVLEPMRSFILPGGHPSVSFGHVARTVCRRAERLVIALNESEPVETEVIRYLNRLSDYLFVLSRKMAQELGVEEIKWAGRKSS
>NC_015703.1|WP_013928829.1|3673120_3673543_+|DUF4281-domain-containing-protein
METAFQIANALVLPQWLLMIVAPRWGVTQWLVRSYLIPVLLACLYAYFIFSGGPLDFNDFSTFEGVKSLFSKGGDGAVLAGWIHYLAFDLVAGIFVLKDSQEKNIGHGWIVLPLFFCFMLGPIGLLAYWIIRAMKTRQVS

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Crispr_ID: NC_015703_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_9

4509667-4510731

Orphan

Consensus_repeat	Method
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	PILER-CR
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CRISPRCasFinder
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CRT

14 spacers

The CRISPR arrays of NC_015703_9

>merge|NC_015703|9|4509667-4510731|PILER-CR,CRISPRCasFinder,CRT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGCACCAAGTTGTGTCCTCATGGCGACTTTTGCATTGTGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGCGCGTTTACACATACGCAGCAAGCAGAGATGCGGCTCAGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGCGTTGGAAAAAGTTCCTTAAGCGCAACGATGCCGGGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGATTATGCCGCAAAATTTAGCCGATTGGCTATCGGCGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGCCTGCTGCATACTTTACCCGACGGGTTTCGCAATGGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGCCAATTTCAAAATCATCAAAAAGACATCATTTGATAAGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGTATAATGATGTTGGAGCTTTAACAGGTTGGTGTGCTTGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGAGATTTTGTAAAAACTTTACAGTTTTTACAAGAATCTGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGACTGTTGAAGTATCTGTTGATGCTATTGCTCAACAATTGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGGTGGATAATTGTGTTGGACAAAGAATATCACCAGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGACAGAAAATCTTTATACAATTACCTTAAATGCTTTTGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGCCAATCATTGTCTGTGTGTGTATCTACTAAAGAAGATGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGCTTATATTGGCAAGGAGAATTGTACTATGGTACATCTTGGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAGCATTTAAAGGATTAAGACTTGTACATCAAGAACAACTGTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG

>NC_015703|9|1|4509667-4510731|PILER-CR
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CACCAAGTTGTGTCCTCATGGCGACTTTTGCATTGT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CGCGTTTACACATACGCAGCAAGCAGAGATGCGGCTCA
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CGTTGGAAAAAGTTCCTTAAGCGCAACGATGCCGG
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	ATTATGCCGCAAAATTTAGCCGATTGGCTATCGGC
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CCTGCTGCATACTTTACCCGACGGGTTTCGCAATG
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CCAATTTCAAAATCATCAAAAAGACATCATTTGATAA
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	TATAATGATGTTGGAGCTTTAACAGGTTGGTGTGCTT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	AGATTTTGTAAAAACTTTACAGTTTTTACAAGAATCT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	ACTGTTGAAGTATCTGTTGATGCTATTGCTCAACAATT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	GTGGATAATTGTGTTGGACAAAGAATATCACCA
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	ACAGAAAATCTTTATACAATTACCTTAAATGCTTTT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CCAATCATTGTCTGTGTGTGTATCTACTAAAGAAGAT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CTTATATTGGCAAGGAGAATTGTACTATGGTACATCTTG
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CATTTAAAGGATTAAGACTTGTACATCAAGAACAACT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG

>NC_015703|9|9|4509667-4510731|CRISPRCasFinder
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CACCAAGTTGTGTCCTCATGGCGACTTTTGCATTGT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CGCGTTTACACATACGCAGCAAGCAGAGATGCGGCTCA
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CGTTGGAAAAAGTTCCTTAAGCGCAACGATGCCGG
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	ATTATGCCGCAAAATTTAGCCGATTGGCTATCGGC
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CCTGCTGCATACTTTACCCGACGGGTTTCGCAATG
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CCAATTTCAAAATCATCAAAAAGACATCATTTGATAA
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	TATAATGATGTTGGAGCTTTAACAGGTTGGTGTGCTT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	AGATTTTGTAAAAACTTTACAGTTTTTACAAGAATCT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	ACTGTTGAAGTATCTGTTGATGCTATTGCTCAACAATT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	GTGGATAATTGTGTTGGACAAAGAATATCACCA
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	ACAGAAAATCTTTATACAATTACCTTAAATGCTTTT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CCAATCATTGTCTGTGTGTGTATCTACTAAAGAAGAT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CTTATATTGGCAAGGAGAATTGTACTATGGTACATCTTG
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CATTTAAAGGATTAAGACTTGTACATCAAGAACAACT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG

>NC_015703|9|1|4509667-4510731|CRT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CACCAAGTTGTGTCCTCATGGCGACTTTTGCATTGT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CGCGTTTACACATACGCAGCAAGCAGAGATGCGGCTCA
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CGTTGGAAAAAGTTCCTTAAGCGCAACGATGCCGG
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	ATTATGCCGCAAAATTTAGCCGATTGGCTATCGGC
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CCTGCTGCATACTTTACCCGACGGGTTTCGCAATG
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CCAATTTCAAAATCATCAAAAAGACATCATTTGATAA
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	TATAATGATGTTGGAGCTTTAACAGGTTGGTGTGCTT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	AGATTTTGTAAAAACTTTACAGTTTTTACAAGAATCT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	ACTGTTGAAGTATCTGTTGATGCTATTGCTCAACAATT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	GTGGATAATTGTGTTGGACAAAGAATATCACCA
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	ACAGAAAATCTTTATACAATTACCTTAAATGCTTTT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CCAATCATTGTCTGTGTGTGTATCTACTAAAGAAGAT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CTTATATTGGCAAGGAGAATTGTACTATGGTACATCTTG
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG	CATTTAAAGGATTAAGACTTGTACATCAAGAACAACT
GTCTTAATCCTTGTTCTGGTGGATTATGGTTTCTGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013929570.1\|4516529_4516979_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NC_015703.1\|WP_013929568.1\|4515273_4516110_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929561.1\|4508100_4508751_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378917
NC_015703.1\|WP_013929555.1\|4506259_4506520_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929566.1\|4513594_4513963_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|226720
NC_015703.1\|WP_169704798.1\|4511024_4511192_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929554.1\|4505677_4506070_-\|DUF2493-domain-containing-protein	unknown	unknown	gnl\|CDD\|378473
NC_015703.1\|WP_013929564.1\|4511612_4512347_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929560.1\|4507821_4508076_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929567.1\|4513964_4514888_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235737
NC_015703.1\|WP_013929556.1\|4506516_4506753_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929562.1\|4508920_4509313_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929565.1\|4512599_4513517_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NC_015703.1\|WP_013929558.1\|4506979_4507594_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929573.1\|4519242_4521459_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378333
NC_015703.1\|WP_013929572.1\|4518338_4519049_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929563.1\|4509309_4509579_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013929557.1\|4506736_4506913_+\|type-I-addiction-module-toxin,-SymE-family	unknown	unknown	gnl\|CDD\|370150
NC_015703.1\|WP_013929571.1\|4516980_4518249_+\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|176454
NC_015703.1\|WP_013929559.1\|4507598_4507766_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013929570.1\|4516529_4516979_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	2.22449e-34
NC_015703.1\|WP_013929567.1\|4513964_4514888_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	2.48252e-152
NC_015703.1\|WP_013929561.1\|4508100_4508751_+\|hypothetical-protein	gnl\|CDD\|378917	pfam12684, DUF3799, PDDEXK-like domain of unknown function (DUF3799). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 265 and 420 amino acids in length. It appears that these proteins are distantly related to the PDDEXK superfamily and so these domains are likely to be nucleases. This family has a C-terminal cysteine cluster similar to that found in pfam01930.	4.24561e-12
NC_015703.1\|WP_013929571.1\|4516980_4518249_+\|Y-family-DNA-polymerase	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	5.52624e-159
NC_015703.1\|WP_013929554.1\|4505677_4506070_-\|DUF2493-domain-containing-protein	gnl\|CDD\|378473	pfam10686, DUF2493, Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.	2.01626e-10
NC_015703.1\|WP_013929565.1\|4512599_4513517_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	4.8869e-20
NC_015703.1\|WP_013929566.1\|4513594_4513963_-\|DoxX-family-protein	gnl\|CDD\|226720	COG4270, COG4270, Predicted membrane protein [Function unknown].	2.31895e-09
NC_015703.1\|WP_013929557.1\|4506736_4506913_+\|type-I-addiction-module-toxin,-SymE-family	gnl\|CDD\|370150	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system. SymE (SOS-induced yjiW gene with similarity to MazE ) is an SOS-induced toxin. It inhibits cell growth, decreases protein synthesis and increases RNA degradation. It may play a role in the recycling of RNAs damaged under SOS response-inducing conditions. It is predicted to have an AbrB fold, similar to that of the antitoxin MazE. Its translation is repressed by the antisense RNA SymR, which acts as an antitoxin.	1.89724e-11
NC_015703.1\|WP_013929573.1\|4519242_4521459_-\|hypothetical-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00294331

>NC_015703.1|WP_013929563.1|4509309_4509579_+|hypothetical-protein
MSAPKITFNIVKRLYPLHQIKGVNEAWKEGIGWFKSANGQNINEQGTAEQQILFCKAIGATSVQLYLEVTMSGLTHKVYADYKMADLIE
>NC_015703.1|WP_013929562.1|4508920_4509313_+|hypothetical-protein
MDIEINPHEIVLEYLRRIQGQNLSIAHVQEIEAMLSNADGEIKPKTTASRIIIFLESTKFKYHEGYVFRRFDEAQNFLYQEMNEGFFQSAKVGVFVDDTEYTPPYVSIMNIDTVKKKEFKKAAQLKLFKP
>NC_015703.1|WP_013929561.1|4508100_4508751_+|hypothetical-protein
MQLLKLTDEEYFSAKRYSNSDLSELEKQMFQVQKRPLPANAFRFGSMFHHYVLDGIEPADATPKERELIEAMAEQLNNNSTFWNRWAFGQKEVTVFWEAEGLPLKCKLDLMLKNRNNTTICDLKTTTAKNIVEFYADIVRYNYHRQAAFYMDSVGATKHEIWGIQKAVPFRIFFLSNNADSDLIQDGRNRYQCLLKAVHEQQFTPAKWTQETLSCL
>NC_015703.1|WP_013929560.1|4507821_4508076_+|hypothetical-protein
MKLNKELFTKAKNDFFNLSNYPFFYRWNIEVEENKVVVKVKTPEMRFYVRNEEINLVISHFVHSGFSIKLLSVEKISYQLIDNK
>NC_015703.1|WP_013929559.1|4507598_4507766_+|hypothetical-protein
MRNYFYEIYVWRAYYEDEVIEGGRISAPSKKEAKQKIMDMYGDRFSEFIDCYEVI
>NC_015703.1|WP_013929558.1|4506979_4507594_+|hypothetical-protein
MKSYQIETGVNQETGEIIFEDKYLYFEGRPREYRYNGQNGQFNRYGTEILTDKSNKILQSFTFQPIAFRIFDDCLFGRAGSEAWAEIFFIDSENTVSGIMFNNTSVQELMRLLEPLMYSRKKLTDVILTARPEKVSSKSDPSKTWYIARFTYEFAEPETIQEYQEYTADRRIFRAETITPNQFLRLYSPNLEPKKIQIQEPENA
>NC_015703.1|WP_013929557.1|4506736_4506913_+|type-I-addiction-module-toxin,-SymE-family
MKKTLKTGYKTRSNWQQRNTKFFPSINLSGDWLQDAGFNIGQAVAVEISQGQLIIKAL
>NC_015703.1|WP_013929556.1|4506516_4506753_+|hypothetical-protein
MNLNKLQNLRIVEHRSTMREGLRVRGVATFNGQPVTFKTHTLIESRLDVYDWTKTPAFLFSISLSQEEFNQIQHEKDA
>NC_015703.1|WP_013929555.1|4506259_4506520_+|hypothetical-protein
MNAYKLVTQDCTSAVLLVPHGSGFLEERVFVSDSAYSSYTINPTFIKINFEDYESISVCEFQSLKYKAIQKIKEFSALLPSPVFSI
>NC_015703.1|WP_013929554.1|4505677_4506070_-|DUF2493-domain-containing-protein
MRTAIIGTRTANTKHYTQLCKMCDVLATLGGITEVISGGASGADALAERYAKENGLKITVIPADWKTHGKAAGPMRNTEIIEACDQVVALWDGKSTGTADTIRKAKQAGKQVYILRYDETPKVGEQMTLF
>NC_015703.1|WP_169704798.1|4511024_4511192_-|hypothetical-protein
MRRALKGFGEALAFAPWLTAVFGPPEITLFELLFMIAISCVGGFFVLLGSIRIKK
>NC_015703.1|WP_013929564.1|4511612_4512347_-|hypothetical-protein
MKSIFLFLLTIATFTSNAQNLLTPSKKSFDKKWVKNTNYQMTWYALRDTTKFEMGKVTTQIFTDKTNLTVITQVSMKNMKTPWVDSTVANLKTLKPIRHSSYNMQRDMVLNFGKIVTGFYNDKMKKYKVTVNDTTKVDYFDSNLYPVLIGWLPLHNDYKQDISIYDYNPSAKIGVIKAFVKNVSSSTCQTDKNGIRPVWVVTVSDEIGNGENGVSTYYFDKEDRKLWKQEIDANGRKMMMKLVE
>NC_015703.1|WP_013929565.1|4512599_4513517_-|AraC-family-transcriptional-regulator
MAKNINHIAINSVSELHRLMGLPKPLHPLISLINMDEVQSAGKTEELHFILNFYGVSLKKNLSGKLKYGQNYYDFDEGVLAMTAPKQILSVGSEDNYKVSGYWLVFHADFILNYPLGKAIKDYGFFSYAVNEALHLSDKEEKMLEGIFKNIEQEYQTSIDQFSQDVMVSHLELFLNYCNRFYNRQFLTRKKAGNDLLTKMEELLDEYFKNDKHIESGLPTVQYFAGKMNVSSNYLSDMLRTLTGQSTQQHIHNKLIEKAKEALTTTNLSVSEIAYQLGFEHPQSFSKLFKSKTNLTPIEFRASFN
>NC_015703.1|WP_013929566.1|4513594_4513963_-|DoxX-family-protein
MKTVKIVLLCLLVAFYLFMGSMHFIQPEQYFAMMPSWLPAQKTLIIISGFVEIVLAILLIPIKTRAIAAKLIIAMLVVFFFAIHIPESIGYYKTGNEKFVASIIRLPIQFLFIAWAWIFAKK
>NC_015703.1|WP_013929567.1|4513964_4514888_-|SDR-family-NAD(P)-dependent-oxidoreductase
MATTNWTANNIPSQQGKTFLITGANSGLGFEATKVLSKKGAHIIMSARNLQKGREALETIKKENSNAKLDLMQLDLADLHSIRKFSDEFHSKYSKLDVLVNNAGVMNPPKREVTKQNFEVQFGTNHLGHFLLTGLLLDILKSTPNSRISVQSSIVHKTESMKPDIHFDDLNFEQSYNREQAYAQSKLANLLFAYELDRRLKANNISTIVTAAHPGYTKTNLQANSGFLMAVILNNILAQNVKIGTLPILRAATDQNVKGSEYFGPTKMMEMKGYPELVKSSDKSYDKDLAKKLWEVSEKLTNIKYEF
>NC_015703.1|WP_013929568.1|4515273_4516110_-|hypothetical-protein
MPDRDLDITKFSFFAYRKLKKTLGEFDAVVECNEIAIKEFIEQAPKENLQKYIQQLSSKHKVKVDEVDFLKFSSRIRQYYVSSVSQQSEQFLKDFRIEWQEYFPEKTWVEPGKGETKFQNTLKNISLTLPSDLIDIYEYYRIVRNYMSHTDRDVEELKSRYEKIQKNKNEFLSDLHLSGLPNPLNDIDFSDFLILTNIVKHIAYLISTSSKPDNDRIAKILFDKSKADNGKTFKGLKKLKNDKNRFENALKSYITTNFGRFSNDDINSIYRKLESLLA
>NC_015703.1|WP_013929570.1|4516529_4516979_+|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MFKIYESPEVELFALDEEDLETYSIPLYQSRIQAGFPSPADDYQELSLDVLKFLVDSPHSTFCVKVNGNSMEGAAIKHGSILVVDRSKTVQNESIIIAMLNGDFTVKRYRKTKGQVWLIPEHPAYEPVLVTEHMDFQVWGVVTYIITQP
>NC_015703.1|WP_013929571.1|4516980_4518249_+|Y-family-DNA-polymerase
MFALVDCNNFYVSCERVFNGKIHHKPVVVLSNNDGCVIARSNEAKALGIKMGALAFENEDFFTKNNVEVFSSNYALYGDMSDRVMKTIAEMVPDMEVYSIDEAFIDFHHMPYEDLEALAQKIRQRVKQYTGIPVSIGIAPTKTLAKVANRYTKKYLPHIGVYQIDSDHDAEKALVNTSVEDIWGVGYKYAKMLNEHNIYNALELTYAKEEWIRQKMHVVGVRMLHELQGTICYNLDNEPSPKKGICVSRSFGQSQKDVKVITEAVATFAARCGEKLRKQQSCAHIVHVFLYTNRHRQDQPQYFNSKVLQLPTSTNSSIEIIRYALRGLELIFKSGYSYKKAGVMISGIVPENQVQIDLFDTRKREIDTKAMKALDELNRRMGRDTVKIAVQGFGRDWHLRQERKSRCYTTRWQEILEVEAWG
>NC_015703.1|WP_013929572.1|4518338_4519049_-|hypothetical-protein
MIDVNEYSPINTTEKVDAIISQLKLKLGKSQSMHFLNQLEIEICYNIRKAKIQSYFKAKFNELTEINNTVKQPEKIKEPLGDSIPPLLRDCNYLLSFLRTLNKITPKISKYVDLEYSRICNVSKRTKNDIILDTRLLLLKHEVDKFRKEAEKPKEKPSKKRKQKSIKKIAHNTRKIVKNSVLQRERLSVEPTLKQIIEERKESKRKEQEYIFTNSSKYIPIKFISTETDEDPLHRK
>NC_015703.1|WP_013929573.1|4519242_4521459_-|hypothetical-protein
MTKTLPKEIASLIHHIALNEHGWWDKTIQRLIISALGSVENKQLTTENILKFVKDNYDTHIDIDKIKRQLEKLCSSKAILKSSNDVFVLSESELNSFKNDISKFEETEEKVKIEFLEIIKRECNREEQSKITWELFNNELLIPILYEFGAKTYELITGQGIKLESNHRFKRFLSKFPTERHVIIKDAIIDFLNPQNPLVRGFVLRKLNAYFFLEAIKLPGSAINKINLASKKQVNFKVFVDTNFLFSFLGLHENPSNEAAKTLLDTIERISNKVKIKLYIAPLTIEETQKVIKNEEQKLKNLRPTQILSNVAVNHLSNGFAKKYFEECNKNGKSIKASDYFEPYLNNLVKVLREKGVEIYNDNKFQNYTTDQRVIDDIIDQKELEETQFKSKPHLQKSYEKLEHDFVLWHFVNDLRPNYVESADEAGSFITTVDFRFINFDTSKRKKNRLKIPVCIHPTNLIQILQLWIPRDENFDIAVLSNLRFPFLFTEFDAVTELTTIRIIEQLSRYENINDLKEDTVTSILFNQALRQKIQLNDDKIKDPILVKDAIIEEVKIHKLLVEDKNRQVEQLDGEVKEKESIVADLSIGKSKVEQINSELTERIVKLENEKRLENKFHSDREQWQSKKEFYLLKKWDELPKRKWYLPNFIFGVLFVIVLLFVLYRQFHTETFFSILVSGTLFIFGTIALSFFNRDKITNSFLYNFRTEKYRKDKMIEFEKDFLKDNPEPQRVNYTEIK

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Crispr_ID: NC_015703_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_10

5456408-5456515

Orphan

Consensus_repeat	Method
CTTCGGTTGTGAGCAACCGATGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_10

>merge|NC_015703|10|5456408-5456515|CRISPRCasFinder
CTTCGGTTGTGAGCAACCGATGGCACCCCAGCTTTACATTTTGCGGTTTATCATTTTAAGGTTTTGCGGTTATTGATGCCTCCTTCGGTTGTAAGCAACCGATGGCAC

>NC_015703|10|10|5456408-5456515|CRISPRCasFinder
CTTCGGTTGTGAGCAACCGATGGCAC	CCCAGCTTTACATTTTGCGGTTTATCATTTTAAGGTTTTGCGGTTATTGATGCCTC
CTTCGGTTGTAAGCAACCGATGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013930325.1\|5450577_5453256_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379720
NC_015703.1\|WP_013930327.1\|5455636_5456281_-\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|368908
NC_015703.1\|WP_013930316.1\|5436932_5438195_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013930335.1\|5465165_5465510_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013930321.1\|5444480_5445266_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320692
NC_015703.1\|WP_013930338.1\|5467880_5468645_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_015703.1\|WP_013930323.1\|5446847_5449310_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_015703.1\|WP_169704858.1\|5464554_5464860_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013930319.1\|5440218_5441601_+\|exo-alpha-sialidase	unknown	unknown	gnl\|CDD\|271234
NC_015703.1\|WP_013930332.1\|5462723_5463488_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|181038
NC_015703.1\|WP_013930331.1\|5460655_5462644_+\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236054
NC_015703.1\|WP_013930336.1\|5465766_5466714_+\|fasciclin-domain-containing-protein	unknown	unknown	gnl\|CDD\|367095
NC_015703.1\|WP_013930337.1\|5466792_5467872_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_015703.1\|WP_169705184.1\|5468750_5469386_+\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013930326.1\|5453400_5455335_-\|putative-porin	unknown	unknown	gnl\|CDD\|379481
NC_015703.1\|WP_013930330.1\|5459791_5460577_+\|succinate-dehydrogenase-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|239578
NC_015703.1\|WP_013930324.1\|5449555_5450416_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NC_015703.1\|WP_013930318.1\|5439054_5439657_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_015703.1\|WP_013930329.1\|5456610_5459478_-\|T9SS-C-terminal-target-domain-containing-protein	unknown	unknown	gnl\|CDD\|372639
NC_015703.1\|WP_013930320.1\|5442261_5444454_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|366374

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013930325.1\|5450577_5453256_-\|TonB-dependent-receptor	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	9.20227e-90
NC_015703.1\|WP_013930327.1\|5455636_5456281_-\|DUF1080-domain-containing-protein	gnl\|CDD\|368908	pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase.	9.07859e-51
NC_015703.1\|WP_013930321.1\|5444480_5445266_-\|M48-family-metalloprotease	gnl\|CDD\|320692	cd07333, M48C_bepA_like, Peptidase M48C Ste24p bepA-like, integral membrane protein. This family contains peptidase M48C Ste24p protease bepA (formerly yfgC)-like proteins considered to be putative metallopeptidases, containing a zinc-binding motif, HEXXH, and a COOH-terminal ER retrieval signal (KKXX). They proteolytically remove the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and golgi, binding one zinc ion per subunit. In eukaryotes, Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification (C is cysteine; A is usually aliphatic; X is one of several amino acids) is complete. Mutation studies have shown that the HEXXH protease motif, which is extracellular but adjacent to a transmembrane domain and therefore close to the membrane surface, is critical for Ste24p activity. Several members of this family also contain tetratricopeptide (TPR) repeat motifs, which are involved in a variety of functions including protein-protein interactions. BepA has been shown to possess protease activity and is responsible for the degradation of incorrectly folded LptD, an essential outer-membrane protein (OMP) involved in OM transport and assembly of lipopolysaccharide. Overexpression of the bepA protease causes abnormal biofilm architecture.	9.07119e-56
NC_015703.1\|WP_013930338.1\|5467880_5468645_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	5.68554e-29
NC_015703.1\|WP_013930323.1\|5446847_5449310_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_015703.1\|WP_013930336.1\|5465766_5466714_+\|fasciclin-domain-containing-protein	gnl\|CDD\|367095	pfam02469, Fasciclin, Fasciclin domain. This extracellular domain is found repeated four times in grasshopper fasciclin I as well as in proteins from mammals, sea urchins, plants, yeast and bacteria.	1.89519e-31
NC_015703.1\|WP_013930319.1\|5440218_5441601_+\|exo-alpha-sialidase	gnl\|CDD\|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	0.00068067
NC_015703.1\|WP_013930332.1\|5462723_5463488_+\|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl\|CDD\|181038	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated.	0
NC_015703.1\|WP_013930331.1\|5460655_5462644_+\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236054	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit.	0
NC_015703.1\|WP_013930337.1\|5466792_5467872_+\|histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	4.20142e-30
NC_015703.1\|WP_013930326.1\|5453400_5455335_-\|putative-porin	gnl\|CDD\|379481	pfam14121, Porin_10, Putative porin. This family of membrane bet-barrel proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 655 and 722 amino acids in length. SRI_1264 is identified by Gene3D as a membrane bound beta-barrel. These sequences are putative porins.	1.56914e-151
NC_015703.1\|WP_013930330.1\|5459791_5460577_+\|succinate-dehydrogenase-cytochrome-b-subunit	gnl\|CDD\|239578	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes. Proteins in this subfamily from G. metallireducens and G. sulfurreducens are bifunctional enzymes with SQR and QFR activities.	3.553e-55
NC_015703.1\|WP_013930324.1\|5449555_5450416_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	4.80073e-66
NC_015703.1\|WP_013930318.1\|5439054_5439657_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.74051e-36
NC_015703.1\|WP_013930329.1\|5456610_5459478_-\|T9SS-C-terminal-target-domain-containing-protein	gnl\|CDD\|372639	pfam13585, CHU_C, C-terminal domain of CHU protein family. The function of this C-terminal domain is not known; there are several conserved tryptophan and asparagine residues.	4.20978e-25
NC_015703.1\|WP_013930320.1\|5442261_5444454_-\|S9-family-peptidase	gnl\|CDD\|366374	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region. This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.	1.75677e-79

>NC_015703.1|WP_013930327.1|5455636_5456281_-|DUF1080-domain-containing-protein
MKKVLYFGTLMMLLVVSVSFAQKKNKDGWISLFDGKSLAGWKVGENASTFSIDNGTIMVAGPRAHIFYDGKVGDHNFKNFEFKAQVMTTPGSNSGIYFHTQYQEGGWPSKGYEVQVNNSHTDWRRTGSLYSIQDVKDVFVEDNVWYTEHIIVQGKHITIKINDKTVVDYVEPDEVAAKVKDPGRKISSGTFALQGHDPKSKVYYKDIMVKPLGE
>NC_015703.1|WP_013930326.1|5453400_5455335_-|putative-porin
MKKWLYIVFCGFCAVAAHGQIRMPTGGSSGPGRPGGSGGQVKIDDSTKVIYGPSTARFFWEEDVFNNHKALYRIDTSFNAFHRYNFVQRSDYQLVDLGNFGTASRNVFFRPIEQLGTQFGYDAYSPYAYQTNEVKYYDTKSPYTNMYLVLGGAGQNIVRFDHSQNLSPRLNLGINAQRFTTNKQFGTSGQGDSQTNLAQNWGFVFHGNYRSKDEKYTVLGHFNHLNHQVYEQGGMAPDSLNFKTERGTVYDNPSATFRTAQSWERRNNWHIYQQYVLAQGFQVYHVFDYKRSIDIFTDSDLTNARKYGFYNNFHYDSTKTRQEVKFRLFENKFGIKGRYQGFNYRAHYRQRIANMTGVYTKSDSTTGAYKLNRFENFVGLWLAYYLKDSTQRATAEFEYLLGRDFKIKGEAVSKWFTLGYLSTFTSPTFLQQLYDSNHLRWTNASRLVNSNNIYGQINVNTKGVRLSPRLDYHLINNYFYYDTAAVARQYTSAFSVVRVGGDAEWRPGKFQFLAQTYYTLVSNDDILRIPRFFANFRASFDFLYAKVLFLQVGAEIHYKSPYFADDYMPLTQQFHLQNRLKTEGVVYTELFLNARINRVRLFVKMANAAQGTYPGALNPGYFSTPFYPVVGRSLGFGVNWPLFD
>NC_015703.1|WP_013930325.1|5450577_5453256_-|TonB-dependent-receptor
MKNYFYVLTAILGISYAAQAQFPGGGGFGGGGGRGGDRGGMGGMGQQQQQAMPDLPKGNGRVSGIIVDSASGKPVEYATVALFEIKTGKPIDGTVTDLKGAFLLKSVPDGEFKFVASFIGYKNFVIAKLTIGKGSKEQNLGNINLPPDVRTLAEVTVMGEKAIIEDKVDRLVYNAEKDISNTGGDAGDVLRKVPLLSVDLDGNVSMRGSENIRVLINGKPSTIVANSVADALKMIPSDQIKTVEVITSPSAKYDAEGSAGIINIITKKNTLQGITGSVDIAGGNRSSNLFGNVNLRTKKLGVSVNAGGRMMYPPTGGYIDISRQLTNGSVVRTRQENDGNQLGGFGNAQLSLDYSPSAKDNITLSVRNSRRAQNQYNTQQSYSFAGTTSSKTFANKIDSKNVGNNLDVNLDYTRKFDKENKEFSILAQLSQNAGDNSYTRDQFRSSIDGELFYRESNPNKSLTKERTLQVDYQDPLSKYVQVETGAKMILRHIESDFRFNYDSTGRGIYTPNPQRTNVFSYDQNVFAGYLSFLFQTKNKWGFKPGLRYEYTQLGAKYQDAPAVNLPNFSTLVPSITVSKSLKGNKTIRFSYNRRIQRPSIQFLNPNVSQSDPFNVSFGNPNLNPEYTNNFEVNLSTFIKTTTLNFSAYTRMTEGSIETVRYRGGQALFNQLTGQQGVNVGSVVINDNTLLTTFQNIGSNRAYGMNIFAMVKPAKGLTINGNVDVRYIMLNSPSLGITNQNWTFNLFGQIQYQLGKDWSAQMFAFGRARDIQLQGTRGGFMGYSFNLLKEFKKKQASLGFGAENFLQNAFRQRTNLSSNTPGNIFTQEQVNYMFNRGFRLTFRKRFGKMSFDGNFFQRKKSVNNDDTKQGGDNSGDTGGGQPAGGGGRRPGGK
>NC_015703.1|WP_013930324.1|5449555_5450416_+|dienelactone-hydrolase-family-protein
MDQRIINLFDEYTHKPLKREDFLSRLTTLTGSTAAAMAVLPLLEINYAHAATVKPKDDRLTIENITYDGDGTKMKGYLARPSAPGSYPAVVVIHENRGINPHIEDVTRRVALAGFIALAPDALSPFGGTPSDADQVRTYFGQLDAQKNLNNFIKAFDYLKSRPDCTGKTGCVGFCWGGGMVNQLAVNVPTLKAAVAYYGRQAEVADVPKIKAKLMLHYGAMDERINAGIPAYEEALKKAGIKYELYVYEGAQHAFNNDTAPTRYNEAVAKLAWERTIGLFKKELGS
>NC_015703.1|WP_013930323.1|5446847_5449310_+|type-I-DNA-topoisomerase
MSKNLVIVESPAKAKTIEGYLGADFTVKSSFGHVRDLPDKDLGVDVKNGYLPAYEVSADKTKVINELKKLAKSSDEVWLATDDDREGEAISWHLKEALGLPKDTKRIVFREITKTALQKAIQNPRAIDMDLVNAQQARRVLDRLVGYELSPVLWRKIKIGNNTALSAGRVQSVAVRLIVDREREVEAHESKSSFKVIARFTLEGGKVLEAELPKNFENEAQARTFLEKCIGAAFKIKNLEVKPGKKSPAPPFTTSTLQQEASRKLSFSVSQTMTVAQKLYEAGKISYMRTDSTNLSEEALQKAKDQIVTEYGDKYHHHRVFKTKSESAQEAHEAIRPTNFGELKASSDRNEQRLYELIWKRSIASQMADAQLERTIATITISTTSEELVAQGEVIKFDGFLKVYLESKDDEEEDTKGMLPPLNIGQVLALDILKATEKFSRPKPRYTEASLVKQLEEMGIGRPSTYAPTLSTIIKREYVVKQDKKGQEREYKELTLKQNEIKEVKGKETYGAEKAKLFPTNTGMVVNDFLVELFPDVVDFSFTASVEKEFDEIAEGKLSWQQMIDGFYRGFHQKIGEVGESKVLKKTEARELGIDPKSGKPIFAKIGKFGPYVQVGEATEDAKPQYANLKKGQLVETITLEEAIELFSLPREVGFFEDKPMVVGVGKYGPYVKHDDKFYSLDRGDDPYTIEAEACIAAIRLKRGDLAGEGEGLGFLEEKPITTGMGKYGPFIKHDDKYYSLPKGMSLQRVTREEALEIIQKKREAESNKVIREFPENTTVKVLRGPYGPYIAVGKRNIKIPKDTDPASLTLEDCLKLAGG
>NC_015703.1|WP_013930321.1|5444480_5445266_-|M48-family-metalloprotease
MERSRIGGRLLIGLIMAVVALFGYFNKSQVNPITGKTQHVSLTPEEEITLGLQSAPQMAAEFGGLYQDQKVQDLVKKVGQGIVQNTEVKNGPYQFDFHVLADPETVNAFAVPGGQIFITMGLLKRLKSEDQLAGVLGHEIGHVVGRHSAQQIAKQELLGGLAGAASVAMSDPNSPNGSAYIAQYVANLVNLKYGREDELESDDFGVKFMVETGRNPEAMVEVMEILAEAGGPNRPAEFQSSHPSPENRIAKIKAAMAKYRQ
>NC_015703.1|WP_013930320.1|5442261_5444454_-|S9-family-peptidase
MKRIRFLFLFLFVQTALYAQFNRGVQWTEDGNGYRRIENNEIVQYTLPDVQKTVLITAKQLTPSGKSEPLPVRSYEFSQDGRKALIYTNTARVWRYDTRGDYWVLDLDKNTLTQVGKARPVSSLMFAKFSPDGKKVAYVSERNIFSEDLTTGKVTQLTKDGTSRLINGTFDWVYEEEFDCRDGFRWSPDSRNIAYWQIDATQIRNFLMINNTDSIYAFNVPVEYPKVGERPSPYKIGVVSAAGGATKWMLTPGDPGNTYVPRMEWANANELIFEQLNRKQNLAKCLYADIKTGRTTEFYTDSDDAWVETKSSYSWSDSPTGWDWLNGGKEFLWMSEKDGWRHLYRVSRDGKTEKCITVGEYDVIGVVQVDEKNNFAYFMASPDNATQTYLFRVKLDGSGKAERMSPAGQAGVHRYDISPNGAWASHSFSNANTAPMTEWLRLPEHKALKESDDISKKLAAQTSPKKKVEFFTVKTEDGISLDGWMVKPDNFDPTKKYPIVFSVYGEPASSTVMDRWGTGRNGLYAGDMAKDGYIYASVDNRGTPSPRGRAWRKAIYRKIGNVNIRDLAMGAKALFAQHPFIDTDRVAVHGWSGGGSSTLNLLFQYPDLFKTGIAVAAVADQLTYDNVYQERYMGIPQENREDFVSGSPISHAKNLRDTQHLLYIHGTGDDNVHYQNAERLVNELVKHNRQFQFMAYPNRSHGIYEGEGTSRHLNTLFTKFLKEHCPPGAK
>NC_015703.1|WP_013930319.1|5440218_5441601_+|exo-alpha-sialidase
MKSIITLFLSLCIHFKSYSQSITLPKLTFTEIQALQFPEEGQILYDLTFKCLRVYNGTKWISTTQNSGMGVEDYTSLSKVYGETFVNTALPVSKFETETYAHSSYIKIINNTCYVLYMCNDKENFEGGINQKIRLSTFNLLMPTQKTITEIAQPSQTSGSFTLDNMGLQVPNMLQISQDTLRLFFRGSVSKNRTILYRDYSLTTGALTNFKTVKATIARNQSIVPLNLLNVYAHLDYLFGPGHGIGEIQDFFMTSEIEKIDDALYSVISVGSGLGKTTTSILVKSTDNGATWSFLGAPDPRFLPGTNSMVTKYMWEGAITSSSTEIYLFCRSVNNGITLTKANKSNLYNFTIPIKIWNTGNAKPLVFNYPGIGLIGLFESSSSIEPNLLSNRTALDVVRISNNYSAFTKLYTISDYSGIHTPSYCLYNNEIFISYTGDKLRRTPKNCGQIFFSRLKRNSF
>NC_015703.1|WP_013930318.1|5439054_5439657_-|Uma2-family-endonuclease
MGQPEYQNRLSIEEYLALEKETDTKYEYHDGEVYAMAGGTPTHSLIANNAGRSFGNALLGKRCYTYNSDLRVATSRNKYVYPDVSVVCGKVTFFEEFKNAATNPVLIVEVLSEETGAYDRGGKFMRYRMIASFREYVLIDQRLPFVEVFYKNDLNTWEYRAYTDLEGLIHFHSLEVDIPMADLYLGVDFPPFDLDNWRLL
>NC_015703.1|WP_013930316.1|5436932_5438195_-|hypothetical-protein
MKTWSLCFLLLGIALKSAANSLLIPMDQTQSNHLKAYGVAYWVLKADLEVDWLLNYRGGSFLIKYTSAVEKECRLRGVSYDVISDAAVNTMMSQITSPDVNMDAVKLHKAAKIVVYSPVKVSHATFEDTDAVLLVLKYAEIPFEIVYDEEVMKGDLAKFDWLHLHHEDFTGQFGRNRRRMSLEDIQAQENIAKKFGYKKVSQLKLDVARTIKGFCAGGGYLFAMCSGAESLDVALAAEGVDIVPSIFDGDGIDPNAQSKLDFSKTLAFEDFKLELSDDEYRGGMSFSTINSSSGQGWGGDESNSFFSLFDFSAKWDVIPAMLVQNHESMIREFFGQTTAFNKKTVKSSVLVMGQSKSSDRYIYGELGRGQYTFYGGHDPEGQRGFHRMPTDLNLHPHSPGYRLILNNVLFPSAKKKKRKT
>NC_015703.1|WP_013930329.1|5456610_5459478_-|T9SS-C-terminal-target-domain-containing-protein
MRQLTLRSLFFLLCVFSTYYSYATHVRAGEITAKRLSDKDLTYEITLNTYHDEIGGRMASDGQNDVTFCIRPFTGGGGTTLLARRIRRFALNSATSLNIFQEKYTFSSPGVYVISVGIENRNDGVVNLTNSVNVPFYVETILVINASLGLNKTPIMLNPPLDSARIGQKFCHNPAAFDADGDSLAYRLSTPKRGEPGTCINRVADGYRDPARGLDPAAQNELKNGPATFTINPITGDLCWDAPAVAGIYNVAFIIEEWRDGVKIGEVVRDMQIVVADGPNRRPLLDPIANTCVEAGQSVTQIVRATDPDNQRMILSAYGGVFNVNQDGTAITNPNDFLVAPAFATFTPSVTTPLSSPAVGTFRWLTGCAHIREASYDVVFKVEDLPGRNSLQLASLESFSIRVVAPKPTGLAARVSAGAVPGFTLTWTSYLCQLPGAQIAIYRKEGCTGGTFSGCTNPGDPVALGYSEIGRVAGNVTTFTDDNNGLGLRRGGVQYSYRIRVIYALPQGGTSPLSDETCLDLPSQIPVLTNVTVDTTSATRGVITVKWTRPPFAAGTVPGPYQYRLSRATGLNGTNYTVIATINTNLGNNPDTIYVDRGLNTVLNGYRYRLEFFHTLNGTLTSLGTTEPASSVRLDVSPASQGLRLNWQAIVPWRNENQRHRVYRENRGRPGTFNLIAEVPVQGPNTFTYIDDGTDRFLADGNATMKLSTDSSYCYRVETVGTYDSPRIRVGQLFNFSQISCGAPSDSTKPCPPELKLEILDCATVSTTNCPETVSNTLNWTSPAINTANRPCAAVASYNVYFARYPEDVFKRVGQTNVPTTTFKHNGLDSYAGCYYVTAISRFGSESARSNVVCNTNCEDFKVPNVFTPNGDGKNDLFIPLTCSIFVESITFEVYNRWGTKVFETNNPAINWDGKTTDGQELPTGTYFYQVKVTFKSLARESEPITSKGWIQLIR
>NC_015703.1|WP_013930330.1|5459791_5460577_+|succinate-dehydrogenase-cytochrome-b-subunit
MSWLTQTLTSSIGKKLVMSLTGLFLCTFLIVHMSGNLQLFKDDDGLAFNVYAVFMTTNPLIKTVSYGLYALILLHAFEGLYLAYQNRQARGGQRYMAYNGKANSTWFSRNMAVLGTILLVFIVVHMGNFWFEYKFGYVPYTQYEQNLTTGEVTATPYEGEIKNKLEEFVREESNTRVVIAKDLYRSVMEGFKNPFVVIFYVLSMFAVSFHLVHGFRSAFQTLGINHLKYNGLLNFLGIGVFGIIIPLGFALMPLYFFFKSM
>NC_015703.1|WP_013930331.1|5460655_5462644_+|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
MATSPKLNAKIPDGPLETKWTKYRSTVPLVNPANKRKLEIIVIGTGLAGASAAATLAELGYSVKAFCFQDSARRAHSIAAQGGINAAKNYQNDGDSTYRLFYDTIKGGDYRAREGNVYRLAEVSAGIIDQCVAQGVPFAREYGGLLSNRSFGGTQVQRTFYAAGQTGQQLLLGAYSGLQRQVGLGAVKMYTRHEMLDVVVIDGKCRGIIARNLVTGEIERHSGHAVLLCSGGYGNVFYLSTNAMGSNVTAAWKAHKKGAFFGNPCFTQIHPTCIPVSGDHQSKLTLMSESLRNDGRIWVPKKQNDERPAYQIPEEERDYYLERRYPAFGNLVPRDIASRAAKERCDAGYGVGTSKMAVYLDYAAAIERYGKGEVSKLNLHDATPEKIIELGKAVVKEKYGNLFDMYKQITGEDPYEVPMRIYPAVHYTMGGLWVDYNLMTTVPGLYALGEANFSDHGANRLGASALMQGLADGYFVIPYTIGAYLANEIRTTHISTDQPEFVEAEKQVKERINKLISIKGKTSPEVFHKRLGKIMWDKCGMARNAEGLKEAIREIQALKKEFWSDVKVMGDADEFNPELDKAGRVADFIELGELMCTDALDRNESCGGHFREEYQTEEGEALRDDENYMYVSAWEHKGESSWELHKEDLIYDNIKIAQRSYK
>NC_015703.1|WP_013930332.1|5462723_5463488_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MEGNMNLTLKVWRQKNKKDSGRMATYQLSGISPDMSFLEMFDVLNEQLINEGQEPVAFDHDCREGICGACSMYINGRPHGPKGAITTCQLHMRSFNDGDTIVVEPWRAKAFPVIKDLVVDRSAFDRIQSAGGYISVNTGNAQDANSIPIPKEKADEAFEAAACIGCGACVAACKNASAMLFVSAKVSQLALLPQGNPERKMRVERMVAQMDEEGFGSCTNTGACAAECPKEISLEHIARLNREYLGAKLTSERV
>NC_015703.1|WP_169704858.1|5464554_5464860_+|hypothetical-protein
MTLKTADLMLEEIFDIAPKFLPRIHFEVTILRHERLGEGAIRVLCTVNNISANRVIKRNYETPFTISTYWFIDERKVNNYYASILENIYESQVKGGAVLVY
>NC_015703.1|WP_013930335.1|5465165_5465510_+|hypothetical-protein
MANNEYSESSRTEHEYIKQTRVDSEYLLSLKSEQAINTVLGWHGGKIGKYRYEVNVSKKSSKLGINNGKVWKLCIWDGEKGMAKGCVVNYDGGWQIRPDKEFEPYVKQILKIYD
>NC_015703.1|WP_013930336.1|5465766_5466714_+|fasciclin-domain-containing-protein
MKTPFKSTSLTTCFAAAAIALTLMSCNDDDSPSTPALGNIAGVASADPQFSTLVGALTKADLVTTLQGTGPFTVFAPNNAAFTKAGITSLDPLTKDALTPILTSHVISGTVKAADVKSGTVKTVNPNNDIYLSKNAEGVFINGNIKVVATDVNASNGVIHVIDNVIVPPTQSLVQVAQGNTNFSELVSLVLAADPAVATALASASANGLTVFAPTNAAFTELYKTTPKATLLAPANKALLTNVLLYHVVPGRVFSTDLPNVSGEVTTANPAGKLTFNLSGGAKVVGKTSGASNITAANILATNGVVHVIDKVLIP
>NC_015703.1|WP_013930337.1|5466792_5467872_+|histidine-kinase
MFSIRYRFVYMFLLGAYSFANILLVEAFEHYPIETGKTELFFLFIAVVIGIWEGNRILDHYLSQKYIKPFWKRITYNFAGSIIITLLVTLLLGGLTSFLTISPHWQDWVLPLKLLLMICFRINLFLNTVHVIYLYHHQLENSHREVANYKKISTQAQLQALKNQVNPHFLFNNLSVLSALIPTDANASVEFVRQFSRVYRYLLKSHEKEIVELSEELSFTDSYLYLLKTRFASGLVVDVRIPPSGISAYIVPVSLQMLVENAVKHNVVAKNKPLYLEIFSHDDVSITVKNNLQLKPVDKEESTKLGLSNIVKRYDFLGRKGIQIQQTDDFFSVTLPLIRIKKPIPSGGNVLPDFSSTNE
>NC_015703.1|WP_013930338.1|5467880_5468645_+|response-regulator-transcription-factor
MKVLILEDEALSAKRASQLLTEFDPSIEVIEPLESIEEAVVWLRNNPEPDLILLDIHLSDGLCFNLFERVSVKSPVIFTTAYDQYTLQAFKINSIDYLLKPLDKAELNNALSKYHTLMQDRKSISSFDIQRIKQTIQSLSKKYKNRFLVKFGDTILFKNINEVAYFFADDKVVYLVTNEGRKYLIDYNLESLEELLDPQLFFRINRKLIVGIDAVQKVKTLLNSRLQVFLKPVFDQDMYVSKEKSPEFKVWLDN
>NC_015703.1|WP_169705184.1|5468750_5469386_+|hypothetical-protein
MSLYLKNGSVIHGKLKQESPVYRIETYDKSQWVFQPTEVEKVIPHKALNPNIRYRDKGFVHYTELGPLAMSNRASNGVTTSAFSFQTTNGYKFNQWLYTGVGVGADLYAVQTFVPVVLCIRGDFSQKGDKIPYYFLEGGYGFNATSNDLDNLRFGGGSTFAGGIGLRILFSNTTGFVIGAGYRFQRSTVTQLNRETIEDFNRLTLRAGFTF

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Crispr_ID: NC_015703_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_11

5772288-5784494

Unclear

I-A,II-B,III-A

Consensus_repeat	Method
GCTTTAATCGTACCTTTTTGGAATTGAAA	PILER-CR
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CRISPRCasFinder
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CRT

184 spacers

cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6

The CRISPR arrays of NC_015703_11

>merge|NC_015703|11|5772288-5784494|PILER-CR,CRISPRCasFinder,CRT
GCTTTAATCGTACCTTTTTGGAATTGAAACTGGTCGATGCCGCACAGAAGGAGTTTGAGGGCATCGGCTTTAATCGTACCTTTTTGGAATTGAAACTTTTCGGGGTTGGTTTATATTCCGGTTTGATTTTGCGCTTTAATCGTACCTTTTTGGAATTGAAACACGGGCAAAGAATCAAAACAGGCTTTTTTGTGAAGCGGCTTTAATCGTACCTTTTTGGAATTGAAACCGTTGAATCCCTACCTGCTTTTAGGGTTTGAAATATGCTTTAATCGTACCTTTTTGGAATTGAAACAAAGGAAATTCAGCGCATTACGAAGGAGACGGCAGCGCTTTAATCGTACCTTTTTGGAATTGAAACACGCTTTGAGCGACGAAACGATATTAGCCGCTGTGAGCTTTAATCGTACCTTTTTGGAATTGAAACAAATCAGGGACGCAAAACTCGATGCACTGGATGCCGAGCTTTAATCGTACCTTTTTGGAATTGAAACATTAAACCACACTCCCAACACTATAGCCCCTATCAAAGCTTTAATCGTACCTTTTTGGAATTGAAACAAGAACTTGCGGTGCTCACCAAAGAGATTCAGGCCGGCTTTAATCGTACCTTTTTGGAATTGAAACAAAGAACCCGAAGCGAAGCCGCCGCCGCCATTAAAGGCTTTAATCGTACCTTTTTGGAATTGAAACATATCGCTTTGGTGAGGTAGGAAAAAACAACGGTCTTGCTTTAATCGTACCTTTTTGGAATTGAAACACAGTGCAGGCTGCAAGAGGGTTGGAGGACAATGGAGCTTTAATCGTACCTTTTTGGAATTGAAACATTCCACATCCAAGCCAATGTAGAGGTAGGATTTCGCGCTTTAATCGTACCTTTTTGGAATTGAAACAGTTTACCGCCAAAGTGGAGACGTTGACGGGACGCAGCTTTAATCGTACCTTTTTGGAATTGAAACAAAAAGGAGTAAAAACAGTTTCGCCCGGGTTTGTGTAGCTTTAATCGTACCTTTTTGGAATTGAAACACTTTCAGCGACTCGCCAACTTTCAGCGACCCGTCAGCTTTAATCGTACCTTTTTGGAATTGAAACTGCGTTAAGGGGGGAAATAAGAAGGTGCAGTTGCCGCTTTAATCGTACCTTTTTGGAATTGAAACATTCACTTTCCGCGTGATCGGTGTTTCGGTAGTTGAGCTTTAATCGTACCTTTTTGGAATTGAAACAGCAGTACAATCAGGCACGCGTAAGGGTTGCGGAGGCTTTAATCGTACCTTTTTGGAATTGAAACACTCATGCACAATCAGAAACTTGCCGAAGATGCCGCGCTTTAATCGTACCTTTTTGGAATTGAAACTGACATTTTGAAATTTAAGCCCCTTAGCACTAGGGTGCTTTAATCGTACCTTTTTGGAATTGAAACAAATCAGGGACGCAAAACTCGATGCACTGGATGCCGGCTTTAATCGTACCTTTTTGGAATTGAAACTGACATTTTGAAATTTAAGCCCCTTAGCACTAGGGGCTTTAATCGTACCTTTTTGGAATTGAAACCTCCCTTTTAAAAAGGAGAGCCTCATCCATAAAGGGCTTTAATCGTACCTTTTTGGAATTGAAACCTTCATACTCTATCTTCAGGAGTTTTTTCTTGAGGTTGCTTTAATCGTACCTTTTTGGAATTGAAACGTATATGCTGAACTACCTTCCCGATAATTGGATATGAGCTTTAATCGTACCTTTTTGGAATTGAAACAGGTTTTTTCATGGTCCTCCACCTTCCAGCCGTACTGCTTTAATCGTACCTTTTTGGAATTGAAACACTACCATCAGGTTTTTTTACTGCACCCGCAGATTTAGCTTTAATCGTACCTTTTTGGAATTGAAACCTTCTTTGATGGTAGAGGTGTCGATGTTCATCTTGACGCTTTAATCGTACCTTTTTGGAATTGAAACGTATTCTCAAAAGATTTGAGTTACAAAGACAGCCTGGCTTTAATCGTACCTTTTTGGAATTGAAACAAAGCCGACAAAACAAAAGGAGTTGTTAAGCTGTCGCTTTAATCGTACCTTTTTGGAATTGAAACACAGTGCCGCCTTGTAGATGCTTGCGTCGTAGGTCATGCTTTAATCGTACCTTTTTGGAATTGAAACACGTCGAGCGGTTGGCGTTCTGACTCTTAATATGCCTGCTTTAATCGTACCTTTTTGGAATTGAAACCAACAGGTAAAACGGCCTAATGGCATACGAGGAACTAGCTTTAATCGTACCTTTTTGGAATTGAAACATTGTCTACGTCTGAATAATGGGCCTTGTAGTTTTTGCTTTAATCGTACCTTTTTGGAATTGAAACACTATATTTTATTTGGGGAAAAACCGGAAGAACCCCAGCTTTAATCGTACCTTTTTGGAATTGAAACGCTCATACCACACTCCCAACACTATAGCCCCTATCAAGCTTTAATCGTACCTTTTTGGAATTGAAACACGGGTTACGGACGGGTCGTACTGACAGGTTTTTACTGCTTTAATCGTACCTTTTTGGAATTGAAACAAAAGCCTTGTTGAAAAAGCGTTGGTCGTATTCGATGCTTTAATCGTACCTTTTTGGAATTGAAACTTCTTTTCTATGGCTCCATTTGCAAATCTTGCTGATGCTTTAATCGTACCTTTTTGGAATTGAAACAGTTAAATGACGAACTCATTAAAATAAATTACAAAAGGCTTTAATCGTACCTTTTTGGAATTGAAACTGAAAGTTGCTGATTATCGTAAATCATAGTTATGATTGCTTTAAATCGTACCTTTTTGGAATTGAAACTGTCAGGAAGCTTTTTGGTTGGATGAATTGGATATAGCTTTAATCGTACCTTTTTGGAATTGAAACCCTTTTGCCCCATTTTGGGCGTGTAGGTTATTTCGGGCTTTAATCGTACCTTTTTGGAATTGAAACAACGTTGTATTGGGTTAGATTGCAGTCAGTCCGGTAGCTTTAATCGTACCTTTTTGGAATTGAAACTCCCAACGCCCGCAGCCGGTACATTTGCGAATGTGAGCTTTAATCGTACCTTTTTGGAATTGAAACAAGATGGCCGTCAGCACTCAATTGTTGAGGGTAAAACGCTTTAATCGTACCTTTTTGGAATTGAAACTGAAAGTTGCTGATTATCGTAAATCATAGTTATGATGCTTTAATCGTACCTTTTTGGAATTGAAACTGCCCGGGCAGTCGTGGCATAACTACGGGCTTGCGGGCTTTAATCGTACCTTTTTGGAATTGAAACTAAAATGAGTATTGCAATGGAATTAACGATTTATGGCTTTAATCGTACCTTTTTGGAATTGAAACTAGATATTTTTACCTTCTATTTCGTCCGAAGCAAGCTGGCTTTAATCGTACCTTTTTGGAATTGAAACCCGCGCAGTATGGGGGGATATACTGCAACATTGCGCTGCTTTAATCGTACCTTTTTGGAATTGAAACAACCTGCCGAAACTGCTACTGCCTCTGTTGTAGAGCGGCTTTAATCGTACCTTTTTGGAATTGAAACATGGGCGGCTGTTTTGGCGGTTTCAAACGCCTTCCGAGCTTTAATCGTACCTTTTTGGAATTGAAACCGTCCCGCGCCCTGACTTTCCTAAACTCTGTTGGTCGGGCTTTAATCGTACCTTTTTGGAATTGAAACTTTTGTTGGATAGACGAATTGGTGTTGCCCGCTCCTTGCTTTAATCGTACCTTTTTGGAATTGAAACTGTCCACGACGGCAAACGGCAAAGTATTGACCGTGTGCTTTAATCGTACCTTTTTGGAATTGAAACACTCCTTCCAATCTTCTTCCGTGAACGCGTCGGCCGCTTTAATCGTACCTTTTTGGAATTGAAACGCGACAGGCAATAGAGTCGTTTGGCAGCGAAATAAAGGCTTTAATCGTACCTTTTTGGAATTGAAACATGCCGACTATCTAACGAATATATTCACGGAGTTGGCTTTAATCGTACCTTTTTGGAATTGAAACGTAACCCTTGCGACATATAATCCCGCTGCGGTTGTTGCTTTAATCGTACCTTTTTGGAATTGAAACTTGTATTAGTTATTGATTGGTTGCTTTGATTTGTCGTGCTTTAATCGTACCTTTTTGGAATTGAAACAAGAAAAAGGCGCGTGCATTTCTCAATATCAACGCGGCTTTAATCGTACCTTTTTGGAATTGAAACACACGTCCGACGTGCTGAACAAAGTAACGGGCGTGGCTTTAATCGTACCTTTTTGGAATTGAAACCCACCAACTGCAAGTCATACCCGTTGGCGGTTCGGCGCTTTAATCGTACCTTTTTGGAATTGAAACTTGCCGTCGCAGGAGACACTCCGAGCAGCATTGCCGGCTTTAATCGTACCTTTTTGGAATTGAAACAATACCGTACCTTTTGTTATGACCACGCCCGCCCCAGCTTTAATCGTACCTTTTTGGAATTGAAACTTCCGACGGATTCATCTGAAGTGCAACGTTGCAGTATGCTTTAATCGTACCTTTTTGGAATTGAAACAAAGCTAAACGAAAAGGAGTACGCCTACGACATGCAGCTTTAATCGTACCTTTTTGGAATTGAAACTCGTTTTTCATGTAGAAAGCGCAGAGACGATTGAAAGCTTTAATCGTACCTTTTTGGAATTGAAACAAATATTATACCTGTTTACGCCACTCATGCCGCTGGCTTTAATCGTACCTTTTTGGAATTGAAACTTTTCCAAAACTTCGGCCGTTGACAGGTTCGCGTCCGCTTTAATCGTACCTTTTTGGAATTGAAACACAATAGCGTGCATGAGGCATTGGCAAGCGAGGATAGCTTTAATCGTACCTTTTTGGAATTGAAACTTGGGAATTTTAAGTACATAAGTTTTGCACGGGGGCTTTAATCGTACCTTTTTGGAATTGAAACCTTACCTAGCCGTAGTTCTCTCTTTTGCCGGGGTAGCTTTAATCGTACCTTTTTGGAATTGAAACTGCTTCGTACTTATCGTCTGCCGGGAGTACCGCTACGCTTTAATCGTACCTTTTTGGAATTGAAACTACTTTTTGGTGACGCGCGAAACTAAAAACGGTGTGGCTTTAATCGTACCTTTTTGGAATTGAAACAAGAAGCGCCGAGCATTAAGCCGCGCACCATCACCTTGCTTTAATCGTACCTTTTTGGAATTGAAACTTCCAGGTTTTCGGCAAGGGCTTTGATTTGGTCAATAGCTTTAATCGTACCTTTTTGGAATTGAAACATAGCAGCTCTTCCGCTACCAACGTCCCTGCCTCCGGCTTTAATCGTACCTTTTTGGAATTGAAACACGCGTTCGTGTCTCCGTCGATGCGTCCCATCGGTGCTTTAATCGTACCTTTTTGGAATTGAAACTCGCACACGCAAGCAGGATGCCGTCCGTGTTGTCGTAGCTTTAATCGTACCTTTTTGGAATTGAAACACAATGCCGCCTTGTAGATGCTTGCGTCGTAGGTCGCTTTAATCGTACCTTTTTGGAATTGAAACTTGTTCAGCCACAAGTTGCGCTAATTTCGGGTGAAGGGCTTTAATCGTACCTTTTTGGAATTGAAACCTTGCCTCAGGTGCAACGGTTGACTGTGCGGGTTGCGGGCTTTAATCGTACCTTTTTGGAATTGAAACTGGAATAAGATGGAACACAACATGAACGGCATTCGGGCTTTAATCGTACCTTTTTGGAATTGAAACAAATAAAAAACAAGAGAAAAGACTGGAACCACAAGCTTTAATCGTACCTTTTTGGAATTGAAACTTGAGTCCTATGACTTGGAATCTACGCTCGAAGTCATGCTTTAATCGTACCTTTTTGGAATTGAAACACTTCACGTAGGTCAGATGCCGGCACCCGTGTTCACGCTTTAATCGTACCTTTTTGGAATTGAAACACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAATGCTTTAATCGTACCTTTTTGGAATTGAAACACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAATGCTTTAATCGTACCTTTTTGGAATTGAAACTCGCAGATAGACCGGGACACAGTTCCAGGGTGGGCAAGCTTTAATCGTACCTTTTTGGAATTGAAACATTGACGGCCCCGGCCACAAAAATCAACCTTTCAGCGCTTTAATCGTACCTTTTTGGAATTGAAACGTGCAATCTGCTCATAAATCTTGCCGGTACGCCCGGCTTTAATCGTACCTTTTTGGAATTGAAACATAAAGTTTCCTACCCACGTTTCGAGTACCGGGGTTGCTTTAATCGTACCTTTTTGGAATTGAAACCCCGCTACCGAAGGGTTGTAAATCCAGTTGCCTGTCGCTTTAATCGTACCTTTTTGGAATTGAAACATATCACCTTTTCCGTGGGGGTAATGCCCGTATTGAGCTTTAATCGTACCTTTTTGGAATTGAAACAAAAAGCATCAACGGCAAAGTGACGCTGAAATTCCAGCTTTAATCGTACCTTTTTGGAATTGAAACAATGAAGTAGCGCAGCGTGTCAAGTAAGTGGCCAACGCTTTAATCGTACCTTTTTGGAATTGAAACCAACAAAAGATGCTGATAGTTTGACCAGGATTTTGAGCTTTAATCGTACCTTTTTGGAATTGAAACTGCGGTCAGCACTCCGTTTGGATTATTGGCATTATCAGCTTTAATCGTACCTTTTTGGAATTGAAACAAAACTTATTGGCCTTGTCGACGTTGGCCCGCGCCTTGCTTTAATCGTACCTTTTTGGAATTGAAACATCAGCGTTACAGTATTGACACGAATAACAATGCTGGCTTTAATCGTACCTTTTTGGAATTGAAACTTTGCGCCGACAACATACTTTTTGCCGGTATCGGAAGCTTTAATCGTACCTTTTTGGAATTGAAACTAAAAAATAAAACAAGCAGAGAGCGCACCCCACGAAGCTTTAATCGTACCTTTTTGGAATTGAAACAAAGCAAGGAAGCATTGGGGGTTAAGTTGCGATACTGCTTTAATCGTACCTTTTTGGAATTGAAACAGGCGCAGGCGGAAGCGGCTATCGTGGAGATTGTGCGGCTTTAATCGTACCTTTTTGGAATTGAAACTGATGGTTTTGGCGTAGGCACCTTTCCGGATAATATGCTTTAATCGTACCTTTTTGGAATTGAAACTAATCTGCGCGGGCGTGTAGCCTCGTTCCAAAAGGTGCTTTAATCGTACCTTTTTGGAATTGAAACTGTCCACGACGGCAAACGGTAAGGTGTTCACCGTGTGCTTTAATCGTACCTTTTTGGAATTGAAACTGTACAAAGCGATGCAGGCCTGCGATGTGTGGTATGCTTTAATCGTACCTTTTTGGAATTGAAACCAGTTTTTTGCAGGCATTACGGCTGCCGGTTCCTTTGCTTTAATCGTACCTTTTTGGAATTGAAACTGGCGAGGCGGTTAAGAATTAGTTGCATCGGTTTGGCTTTAATCGTACCTTTTTGGAATTGAAACTCAAAAGGTTGATATTGTTTTGCAGCACATTAAAGCTGCTTTAATCGTACCTTTTTGGAATTGAAACTCAATCAGTGCGGTATTGTGACGATCAATGATTTTCTGCTTTAATCGTACCTTTTTGGAATTGAAACTTTGGATTGTTGGCATTATCAAGCGCCTGCCGTTCCGGCTTTAATCGTACCTTTTTGGAATTGAAACTATAGTGCAGGGAGGTAAAGCACATAAATCGGAACGCTTTAATCGTACCTTTTTGGAATTGAAACTTTATTACAATGCCGTTCTAAAAGACATTGCCGCGCTTTAATCGTACCTTTTTGGAATTGAAACCTTATCCCTGAAGGTTGAGGGACTAATTCTTCCTGCTTGCTTTAATCGTACCTTTTTGGAATTGAAACCTGTTAAACGTTGTTCTAAGCAGTGCGGCTCGTGCGGCTTTAATCGTACCTTTTTGGAATTGAAACTTCGTTAAACTGCCGACGTTTGGCAAGTGGTTTTAGCTTTAATCGTACCTTTTTGGAATTGAAACCCCACTGGTAGCGTGTTCCGGTATAATTCCCCCCTTTGCTTTAATCGTACCTTTTTGGAATTGAAACCTACGCAAGTATATCAAAAGTATAGCCACTAATCCAAGCTTTAATCGTACCTTTTTGGAATTGAAACTACGACGGAAAGTAGATGTTGGTCCTATTAATTCCCGCTTTAATCGTACCTTTTTGGAATTGAAACTATAGTGCAGGGAGGTAAAGCACATAAATCGGAACGCTTTAATCGTACCTTTTTGGAATTGAAACAGGATTGATGAAAGGGCATAGCGTCTAATATAGCTTGCTTTAATCGTACCTTTTTGGAATTGAAACCACTTTAACCGGGGTAAAAAATGTCTAACCTCTGCTTGCTTTAATCGTACCTTTTTGGAATTGAAACTTTGGTTTGTATCGCTTCTTTGAGTGTTGCCCCTTCCGGCTTTAATCGTACCTTTTTGGAATTGAAACAAATGAAGCCTGACGAGGCGGCTTTTCAGATCAAAGGCTTTAATCGTACCTTTTTGGAATTGAAACAAGGTCTTTCCAATGCAAGCGGTTATATTCCCAAGGGCTTTAATCGTACCTTTTTGGAATTGAAACTTAGGCGGCCGGGCTTTAAGATTCGGTACAGTTCTTTGCTTTAATCGTACCTTTTTGGAATTGAAACTTAGGGCAAGAGGCTTTGAAACAGGCGTATTTCTCGCTTTAATCGTACCTTTTTGGAATTGAAACCTGTTACACTTTTATGCTACCCGTTTAATAGCCGGGCTTTAATCGTACCTTTTTGGAATTGAAACGCAGTTTTTTAAAAATAAGTTCATTGCTGCTGTCAAGCTTTAATCGTACCTTTTTGGAATTGAAACCATCCGCGTAACCCTGCCCCAAACTGCCCAAATACGTGCTTTAATCGTACCTTTTTGGAATTGAAACAAGAAGTCTATGTAAGACTTCATCTTTTCTTTGATTGCTTTAATCGTACCTTTTTGGAATTGAAACCTAGGGTTTGATTTTGGCAATTCGTTTCAGTAATTCGCTTTAATCGTACCTTTTTGGAATTGAAACGAGACAAGACCTGTAAAACCTTTAATTTTCACTGAGGCTTTAATCGTACCTTTTTGGAATTGAAACTTACGATAACATCCGAACTTTGCCATCCCCATGTAGGCTTTAATCGTACCTTTTTGGAATTGAAACAACCGTAGACACCGAAAAAGCGATTCGCTCCTACTAGCTTTAATCGTACCTTTTTGGAATTGAAACAGTGCTGGGCAAGGTGCAATTATTAAGGCAATAAATGCTTTAATCGTACCTTTTTGGAATTGAAACTTGGGAGAAAATTACGACTATCTATCCCGTTTGTGCGGCTTTAATCGTACCTTTTTGGAATTGAAACTCTTAGATAAATCTTTTTTTGTATCCTCAATTATAGCGCTTTAATCGTACCTTTTTGGAATTGAAACTGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACCGCTTTAATCGTACCTTTTTGGAATTGAAACATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAAGCTTTAATCGTACCTTTTTGGAATTGAAACTGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACCGCTTTAATCGTACCTTTTTGGAATTGAAACATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAAGCTTTAATCGTACCTTTTTGGAATTGAAACCAACTAAAATGACAAAAGCAGAAAAATTCTTATTAAGCTTTAATCGTACCTTTTTGGAATTGAAACACGGTCAGGCCGTCCTGATAACGTGCGCCCAATTGAGCTTTAATCGTACCTTTTTGGAATTGAAACAGACCTAAGTGATGACAAAGACGATGACTTCAAAATGCTTTAATCGTACCTTTTTGGAATTGAAACAATGTCATGAAGGGTATTAATTTCTACAACTTCTCGCTTTAATCGTACCTTTTTGGAATTGAAACAATGATGTAACTCGGTGCGACAGCTACCTCATGGGGCTTTAATCGTACCTTTTTGGAATTGAAACATCAGCGTTACAGTATTGACACGAATAACAATGCCGCGCTTTAATCGTACCTTTTTGGAATTGAAACATCTTGACTGCCAACACCACTTCTTTCGGTTGACAAGCTTTAATCGTACCTTTTTGGAATTGAAACCTGCTCCACACTTCGCAAACAGTTTCTTCCGGCAGTGCTTTAATCGTACCTTTTTGGAATTGAAACTTTAAAAATAAGTTTCTGTTTCTCAATCAGGGCAATGCTTTAATCGTACCTTTTTGGAATTGAAACAAGAAAGTGGACTACAGCAACATTCAAAAGCTGGAAAGCTTTAATCGTACCTTTTTGGAATTGAAACCTGTCTATTTTCTTCAGGCGAACGGTGTTTGCCGCGTGCTTTAATCGTACCTTTTTGGAATTGAAACATGGATGCCATATTGTCAAAGAAATCGTTTTGAGTAGGCTTTAATCGTACCTTTTTGGAATTGAAACTAGCTGTTATTAAGTTATTAGTGTTGCTCTATACAGCTTTAATCGTACCTTTTTGGAATTGAAACATGACGCCTTGGCTGACCTTAACGACATTCCTTTTAAGCTTTAATCGTACCTTTTTGGAATTGAAACTGCCTGCGTGTCGCTTCACGTTCACAAAGAAACGGCGCTTTAATCGTACCTTTTTGGAATTGAAACTGCGAAAGGTCTACGAGACCAACTTCAAATCAAAGCGCTTTAATCGTACCTTTTTGGAATTGAAACAATGCGAAAGCCGCGCATGGAGGCTTCCGAATAGATGCTTTAATCGTACCTTTTTGGAATTGAAACGTTCTCAAAACTCGAGCCCGTCCCTAAAGGAGTAGAGCTTTAATCGTACCTTTTTGGAATTGAAACTTCATTTAATCGCCGAAACAAGGCTTTTCAGTATGTTGCTTTAATCGTACCTTTTTGGAATTGAAACATCGAAGTGACCGTGTACAGGTAGTTGAGTGTCCCGCTTTAATCGTACCTTTTTGGAATTGAAACAACAATACAAGGCGAAAATTGCCGCCTGATAGTGAAAGCTTTAATCGTACCTTTTTGGAATTGAAACTCGTAAAATTGAAAGGCTTTAAACTGTTGAGCAATGGCTTTAATCGTACCTTTTTGGAATTGAAACGGCTTGGGTTGATGCAGCCACAAAACGGTACAACGAAGCTTTAATCGTACCTTTTTGGAATTGAAACTTCAAGCGCCACTGCTCATACTTGGCAAGTAGCGTTGCTTTAATCGTACCTTTTTGGAATTGAAACAAAATTTGCAGACTATATCCCCGGTCTGCAAGCGGTGCTTTAATCGTACCTTTTTGGAATTGAAACAGTTCTGTCAAATTGGCAAAAGCGTTAAGTTGCAGGGCTTTAATCGTACCTTTTTGGAATTGAAACAAAGCGTCCGATTAGGGTTGCCTATCGGCTCCGTCGCTTTAATCGTACCTTTTTGGAATTGAAACAGGCTTTCCGATGAATGGGTAGAGGTTAAAACTTCGGGCTTTAATCGTACCTTTTTGGAATTGAAACAACATTGTAACCGTTACAATTCCTTAATATGGCACTGCTTTAATCGTACCTTTTTGGAATTGAAACGAGGATGAATACGAATAAGGTAAAATTCAAAAAAGAGCTTTAATCGTACCTTTTTGGAATTGAAACGGCTTAAAGGAGCACCAAGCCAAGTATCTCAAATTTGCTTTAATCGTACCTTTTTGGAATTGAAACTTAGGCAGGAAGGTATAGGCTGATTGGTGCAGCGTTGCTTTAATCGTACCTTTTTGGAATTGAAACAAAGATAATCCTGCCGGATGGGTAGTTGTAAAATTTCGCTTTAATCGTACCTTTTTGGAATTGAAACATCAGATTTTTCATCGACATTTAATTTTGTATCTGTGCTTTAATCGTACCTTTTTGGAATTGAAACTCGAAAATTCGTAGCCGACTGCAGTAAAATAGGTTTGCTTTAATCGTACCTTTTTGGAATTGAAACCGTCTTACTTCCTCACGTTTTACCTGTGCCTCGGTTTGCTTTAATCGTACCTTTTTGGAATTGAAACGACGCCAACATTTGAAGAAGTGCTACAGGCACAAAAGCTTTAATCGTACCTTTTTGGAATTGAAAT

>NC_015703|11|2|5772288-5784493|PILER-CR
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGGTCGATGCCGCACAGAAGGAGTTTGAGGGCATCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTTTCGGGGTTGGTTTATATTCCGGTTTGATTTTGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACGGGCAAAGAATCAAAACAGGCTTTTTTGTGAAGCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCGTTGAATCCCTACCTGCTTTTAGGGTTTGAAATAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAGGAAATTCAGCGCATTACGAAGGAGACGGCAGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACGCTTTGAGCGACGAAACGATATTAGCCGCTGTGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAATCAGGGACGCAAAACTCGATGCACTGGATGCCGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATTAAACCACACTCCCAACACTATAGCCCCTATCAAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAGAACTTGCGGTGCTCACCAAAGAGATTCAGGCCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAGAACCCGAAGCGAAGCCGCCGCCGCCATTAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATATCGCTTTGGTGAGGTAGGAAAAAACAACGGTCTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACAGTGCAGGCTGCAAGAGGGTTGGAGGACAATGGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATTCCACATCCAAGCCAATGTAGAGGTAGGATTTCGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGTTTACCGCCAAAGTGGAGACGTTGACGGGACGCA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAAAGGAGTAAAAACAGTTTCGCCCGGGTTTGTGTA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACTTTCAGCGACTCGCCAACTTTCAGCGACCCGTCA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGCGTTAAGGGGGGAAATAAGAAGGTGCAGTTGCC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATTCACTTTCCGCGTGATCGGTGTTTCGGTAGTTGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGCAGTACAATCAGGCACGCGTAAGGGTTGCGGAG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACTCATGCACAATCAGAAACTTGCCGAAGATGCCGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGACATTTTGAAATTTAAGCCCCTTAGCACTAGGGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAATCAGGGACGCAAAACTCGATGCACTGGATGCCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGACATTTTGAAATTTAAGCCCCTTAGCACTAGGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTCCCTTTTAAAAAGGAGAGCCTCATCCATAAAGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTTCATACTCTATCTTCAGGAGTTTTTTCTTGAGGTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGTATATGCTGAACTACCTTCCCGATAATTGGATATGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGGTTTTTTCATGGTCCTCCACCTTCCAGCCGTACT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACTACCATCAGGTTTTTTTACTGCACCCGCAGATTTA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTTCTTTGATGGTAGAGGTGTCGATGTTCATCTTGAC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGTATTCTCAAAAGATTTGAGTTACAAAGACAGCCTG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAGCCGACAAAACAAAAGGAGTTGTTAAGCTGTC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACAGTGCCGCCTTGTAGATGCTTGCGTCGTAGGTCAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACGTCGAGCGGTTGGCGTTCTGACTCTTAATATGCCT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCAACAGGTAAAACGGCCTAATGGCATACGAGGAACTA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATTGTCTACGTCTGAATAATGGGCCTTGTAGTTTTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACTATATTTTATTTGGGGAAAAACCGGAAGAACCCCA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGCTCATACCACACTCCCAACACTATAGCCCCTATCAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACGGGTTACGGACGGGTCGTACTGACAGGTTTTTACT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAAGCCTTGTTGAAAAAGCGTTGGTCGTATTCGAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTCTTTTCTATGGCTCCATTTGCAAATCTTGCTGAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGTTAAATGACGAACTCATTAAAATAAATTACAAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGAAAGTTGCTGATTATCGTAAATCATAGTTATGATTG
CTTTAAATCGTACCTTTTTGGAATTGAAA	CTGTCAGGAAGCTTTTTGGTTGGATGAATTGGATATA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCCTTTTGCCCCATTTTGGGCGTGTAGGTTATTTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAACGTTGTATTGGGTTAGATTGCAGTCAGTCCGGTA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTCCCAACGCCCGCAGCCGGTACATTTGCGAATGTGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAGATGGCCGTCAGCACTCAATTGTTGAGGGTAAAAC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGAAAGTTGCTGATTATCGTAAATCATAGTTATGAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGCCCGGGCAGTCGTGGCATAACTACGGGCTTGCGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTAAAATGAGTATTGCAATGGAATTAACGATTTATG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTAGATATTTTTACCTTCTATTTCGTCCGAAGCAAGCTG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCCGCGCAGTATGGGGGGATATACTGCAACATTGCGCT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAACCTGCCGAAACTGCTACTGCCTCTGTTGTAGAGCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATGGGCGGCTGTTTTGGCGGTTTCAAACGCCTTCCGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCGTCCCGCGCCCTGACTTTCCTAAACTCTGTTGGTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTTTGTTGGATAGACGAATTGGTGTTGCCCGCTCCTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGTCCACGACGGCAAACGGCAAAGTATTGACCGTGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACTCCTTCCAATCTTCTTCCGTGAACGCGTCGGCC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGCGACAGGCAATAGAGTCGTTTGGCAGCGAAATAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATGCCGACTATCTAACGAATATATTCACGGAGTTG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGTAACCCTTGCGACATATAATCCCGCTGCGGTTGTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTGTATTAGTTATTGATTGGTTGCTTTGATTTGTCGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAGAAAAAGGCGCGTGCATTTCTCAATATCAACGCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACACGTCCGACGTGCTGAACAAAGTAACGGGCGTG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCCACCAACTGCAAGTCATACCCGTTGGCGGTTCGGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTGCCGTCGCAGGAGACACTCCGAGCAGCATTGCCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAATACCGTACCTTTTGTTATGACCACGCCCGCCCCA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTCCGACGGATTCATCTGAAGTGCAACGTTGCAGTAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAGCTAAACGAAAAGGAGTACGCCTACGACATGCA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTCGTTTTTCATGTAGAAAGCGCAGAGACGATTGAAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAATATTATACCTGTTTACGCCACTCATGCCGCTG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTTTCCAAAACTTCGGCCGTTGACAGGTTCGCGTCC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACAATAGCGTGCATGAGGCATTGGCAAGCGAGGATA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTGGGAATTTTAAGTACATAAGTTTTGCACGGGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTTACCTAGCCGTAGTTCTCTCTTTTGCCGGGGTA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGCTTCGTACTTATCGTCTGCCGGGAGTACCGCTAC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTACTTTTTGGTGACGCGCGAAACTAAAAACGGTGTG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAGAAGCGCCGAGCATTAAGCCGCGCACCATCACCTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTCCAGGTTTTCGGCAAGGGCTTTGATTTGGTCAATA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATAGCAGCTCTTCCGCTACCAACGTCCCTGCCTCCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACGCGTTCGTGTCTCCGTCGATGCGTCCCATCGGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTCGCACACGCAAGCAGGATGCCGTCCGTGTTGTCGTA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACAATGCCGCCTTGTAGATGCTTGCGTCGTAGGTC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTGTTCAGCCACAAGTTGCGCTAATTTCGGGTGAAGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTTGCCTCAGGTGCAACGGTTGACTGTGCGGGTTGCGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGGAATAAGATGGAACACAACATGAACGGCATTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAATAAAAAACAAGAGAAAAGACTGGAACCACAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTGAGTCCTATGACTTGGAATCTACGCTCGAAGTCAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACTTCACGTAGGTCAGATGCCGGCACCCGTGTTCAC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTCGCAGATAGACCGGGACACAGTTCCAGGGTGGGCAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATTGACGGCCCCGGCCACAAAAATCAACCTTTCAGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGTGCAATCTGCTCATAAATCTTGCCGGTACGCCCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATAAAGTTTCCTACCCACGTTTCGAGTACCGGGGTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCCCGCTACCGAAGGGTTGTAAATCCAGTTGCCTGTC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATATCACCTTTTCCGTGGGGGTAATGCCCGTATTGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAAAGCATCAACGGCAAAGTGACGCTGAAATTCCA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAATGAAGTAGCGCAGCGTGTCAAGTAAGTGGCCAAC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCAACAAAAGATGCTGATAGTTTGACCAGGATTTTGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGCGGTCAGCACTCCGTTTGGATTATTGGCATTATCA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAACTTATTGGCCTTGTCGACGTTGGCCCGCGCCTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATCAGCGTTACAGTATTGACACGAATAACAATGCTG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTTGCGCCGACAACATACTTTTTGCCGGTATCGGAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTAAAAAATAAAACAAGCAGAGAGCGCACCCCACGAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAGCAAGGAAGCATTGGGGGTTAAGTTGCGATACT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGGCGCAGGCGGAAGCGGCTATCGTGGAGATTGTGCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGATGGTTTTGGCGTAGGCACCTTTCCGGATAATAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTAATCTGCGCGGGCGTGTAGCCTCGTTCCAAAAGGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGTCCACGACGGCAAACGGTAAGGTGTTCACCGTGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGTACAAAGCGATGCAGGCCTGCGATGTGTGGTAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCAGTTTTTTGCAGGCATTACGGCTGCCGGTTCCTTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGGCGAGGCGGTTAAGAATTAGTTGCATCGGTTTG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTCAAAAGGTTGATATTGTTTTGCAGCACATTAAAGCT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTCAATCAGTGCGGTATTGTGACGATCAATGATTTTCT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTTGGATTGTTGGCATTATCAAGCGCCTGCCGTTCCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTATAGTGCAGGGAGGTAAAGCACATAAATCGGAAC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTTATTACAATGCCGTTCTAAAAGACATTGCCGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTTATCCCTGAAGGTTGAGGGACTAATTCTTCCTGCTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTGTTAAACGTTGTTCTAAGCAGTGCGGCTCGTGCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTCGTTAAACTGCCGACGTTTGGCAAGTGGTTTTA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCCCACTGGTAGCGTGTTCCGGTATAATTCCCCCCTTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTACGCAAGTATATCAAAAGTATAGCCACTAATCCAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTACGACGGAAAGTAGATGTTGGTCCTATTAATTCCC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTATAGTGCAGGGAGGTAAAGCACATAAATCGGAAC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGGATTGATGAAAGGGCATAGCGTCTAATATAGCTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCACTTTAACCGGGGTAAAAAATGTCTAACCTCTGCTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTTGGTTTGTATCGCTTCTTTGAGTGTTGCCCCTTCCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAATGAAGCCTGACGAGGCGGCTTTTCAGATCAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAGGTCTTTCCAATGCAAGCGGTTATATTCCCAAGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTAGGCGGCCGGGCTTTAAGATTCGGTACAGTTCTTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTAGGGCAAGAGGCTTTGAAACAGGCGTATTTCTC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTGTTACACTTTTATGCTACCCGTTTAATAGCCGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGCAGTTTTTTAAAAATAAGTTCATTGCTGCTGTCAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCATCCGCGTAACCCTGCCCCAAACTGCCCAAATACGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAGAAGTCTATGTAAGACTTCATCTTTTCTTTGATT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTAGGGTTTGATTTTGGCAATTCGTTTCAGTAATTC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGAGACAAGACCTGTAAAACCTTTAATTTTCACTGAG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTACGATAACATCCGAACTTTGCCATCCCCATGTAG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAACCGTAGACACCGAAAAAGCGATTCGCTCCTACTA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGTGCTGGGCAAGGTGCAATTATTAAGGCAATAAAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTGGGAGAAAATTACGACTATCTATCCCGTTTGTGCG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTCTTAGATAAATCTTTTTTTGTATCCTCAATTATAGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCAACTAAAATGACAAAAGCAGAAAAATTCTTATTAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CACGGTCAGGCCGTCCTGATAACGTGCGCCCAATTGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGACCTAAGTGATGACAAAGACGATGACTTCAAAAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAATGTCATGAAGGGTATTAATTTCTACAACTTCTC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAATGATGTAACTCGGTGCGACAGCTACCTCATGGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATCAGCGTTACAGTATTGACACGAATAACAATGCCGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATCTTGACTGCCAACACCACTTCTTTCGGTTGACAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTGCTCCACACTTCGCAAACAGTTTCTTCCGGCAGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTTAAAAATAAGTTTCTGTTTCTCAATCAGGGCAAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAGAAAGTGGACTACAGCAACATTCAAAAGCTGGAAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCTGTCTATTTTCTTCAGGCGAACGGTGTTTGCCGCGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATGGATGCCATATTGTCAAAGAAATCGTTTTGAGTAG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTAGCTGTTATTAAGTTATTAGTGTTGCTCTATACA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATGACGCCTTGGCTGACCTTAACGACATTCCTTTTAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGCCTGCGTGTCGCTTCACGTTCACAAAGAAACGGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTGCGAAAGGTCTACGAGACCAACTTCAAATCAAAGC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAATGCGAAAGCCGCGCATGGAGGCTTCCGAATAGAT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGTTCTCAAAACTCGAGCCCGTCCCTAAAGGAGTAGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTCATTTAATCGCCGAAACAAGGCTTTTCAGTATGTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATCGAAGTGACCGTGTACAGGTAGTTGAGTGTCCC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAACAATACAAGGCGAAAATTGCCGCCTGATAGTGAAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTCGTAAAATTGAAAGGCTTTAAACTGTTGAGCAATG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGGCTTGGGTTGATGCAGCCACAAAACGGTACAACGAA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTCAAGCGCCACTGCTCATACTTGGCAAGTAGCGTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAATTTGCAGACTATATCCCCGGTCTGCAAGCGGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGTTCTGTCAAATTGGCAAAAGCGTTAAGTTGCAGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAGCGTCCGATTAGGGTTGCCTATCGGCTCCGTC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAGGCTTTCCGATGAATGGGTAGAGGTTAAAACTTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAACATTGTAACCGTTACAATTCCTTAATATGGCACT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGAGGATGAATACGAATAAGGTAAAATTCAAAAAAGA
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGGCTTAAAGGAGCACCAAGCCAAGTATCTCAAATTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTTAGGCAGGAAGGTATAGGCTGATTGGTGCAGCGTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CAAAGATAATCCTGCCGGATGGGTAGTTGTAAAATTTC
GCTTTAATCGTACCTTTTTGGAATTGAAA	CATCAGATTTTTCATCGACATTTAATTTTGTATCTGT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CTCGAAAATTCGTAGCCGACTGCAGTAAAATAGGTTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CCGTCTTACTTCCTCACGTTTTACCTGTGCCTCGGTTT
GCTTTAATCGTACCTTTTTGGAATTGAAA	CGACGCCAACATTTGAAGAAGTGCTACAGGCACAAAA
GCTTTAATCGTACCTTTTTGGAATTGAAA

>NC_015703|11|11|5772288-5784494|CRISPRCasFinder
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGGTCGATGCCGCACAGAAGGAGTTTGAGGGCATCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTTCGGGGTTGGTTTATATTCCGGTTTGATTTTGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGGGCAAAGAATCAAAACAGGCTTTTTTGTGAAGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CGTTGAATCCCTACCTGCTTTTAGGGTTTGAAATAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGGAAATTCAGCGCATTACGAAGGAGACGGCAGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGCTTTGAGCGACGAAACGATATTAGCCGCTGTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATCAGGGACGCAAAACTCGATGCACTGGATGCCGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTAAACCACACTCCCAACACTATAGCCCCTATCAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAACTTGCGGTGCTCACCAAAGAGATTCAGGCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGAACCCGAAGCGAAGCCGCCGCCGCCATTAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATATCGCTTTGGTGAGGTAGGAAAAAACAACGGTCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACAGTGCAGGCTGCAAGAGGGTTGGAGGACAATGGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTCCACATCCAAGCCAATGTAGAGGTAGGATTTCGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGTTTACCGCCAAAGTGGAGACGTTGACGGGACGCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAAAGGAGTAAAAACAGTTTCGCCCGGGTTTGTGTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTTTCAGCGACTCGCCAACTTTCAGCGACCCGTCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGTTAAGGGGGGAAATAAGAAGGTGCAGTTGCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTCACTTTCCGCGTGATCGGTGTTTCGGTAGTTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGCAGTACAATCAGGCACGCGTAAGGGTTGCGGAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTCATGCACAATCAGAAACTTGCCGAAGATGCCGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGACATTTTGAAATTTAAGCCCCTTAGCACTAGGGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATCAGGGACGCAAAACTCGATGCACTGGATGCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGACATTTTGAAATTTAAGCCCCTTAGCACTAGGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTCCCTTTTAAAAAGGAGAGCCTCATCCATAAAGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTCATACTCTATCTTCAGGAGTTTTTTCTTGAGGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTATATGCTGAACTACCTTCCCGATAATTGGATATGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGGTTTTTTCATGGTCCTCCACCTTCCAGCCGTACT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTACCATCAGGTTTTTTTACTGCACCCGCAGATTTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTCTTTGATGGTAGAGGTGTCGATGTTCATCTTGAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTATTCTCAAAAGATTTGAGTTACAAAGACAGCCTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGCCGACAAAACAAAAGGAGTTGTTAAGCTGTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACAGTGCCGCCTTGTAGATGCTTGCGTCGTAGGTCAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGTCGAGCGGTTGGCGTTCTGACTCTTAATATGCCT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CAACAGGTAAAACGGCCTAATGGCATACGAGGAACTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTGTCTACGTCTGAATAATGGGCCTTGTAGTTTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTATATTTTATTTGGGGAAAAACCGGAAGAACCCCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GCTCATACCACACTCCCAACACTATAGCCCCTATCAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGGGTTACGGACGGGTCGTACTGACAGGTTTTTACT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAAGCCTTGTTGAAAAAGCGTTGGTCGTATTCGAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCTTTTCTATGGCTCCATTTGCAAATCTTGCTGAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGTTAAATGACGAACTCATTAAAATAAATTACAAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGAAAGTTGCTGATTATCGTAAATCATAGTTATGATTG
CTTTAAATCGTACCTTTTTGGAATTGAAAC	TGTCAGGAAGCTTTTTGGTTGGATGAATTGGATATA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCTTTTGCCCCATTTTGGGCGTGTAGGTTATTTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACGTTGTATTGGGTTAGATTGCAGTCAGTCCGGTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCCCAACGCCCGCAGCCGGTACATTTGCGAATGTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGATGGCCGTCAGCACTCAATTGTTGAGGGTAAAAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGAAAGTTGCTGATTATCGTAAATCATAGTTATGAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCCCGGGCAGTCGTGGCATAACTACGGGCTTGCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAAAATGAGTATTGCAATGGAATTAACGATTTATG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAGATATTTTTACCTTCTATTTCGTCCGAAGCAAGCTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCGCGCAGTATGGGGGGATATACTGCAACATTGCGCT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACCTGCCGAAACTGCTACTGCCTCTGTTGTAGAGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGGGCGGCTGTTTTGGCGGTTTCAAACGCCTTCCGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CGTCCCGCGCCCTGACTTTCCTAAACTCTGTTGGTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTTGTTGGATAGACGAATTGGTGTTGCCCGCTCCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGTCCACGACGGCAAACGGCAAAGTATTGACCGTGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTCCTTCCAATCTTCTTCCGTGAACGCGTCGGCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GCGACAGGCAATAGAGTCGTTTGGCAGCGAAATAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGCCGACTATCTAACGAATATATTCACGGAGTTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTAACCCTTGCGACATATAATCCCGCTGCGGTTGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGTATTAGTTATTGATTGGTTGCTTTGATTTGTCGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAAAAAGGCGCGTGCATTTCTCAATATCAACGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACACGTCCGACGTGCTGAACAAAGTAACGGGCGTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCACCAACTGCAAGTCATACCCGTTGGCGGTTCGGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGCCGTCGCAGGAGACACTCCGAGCAGCATTGCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATACCGTACCTTTTGTTATGACCACGCCCGCCCCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCCGACGGATTCATCTGAAGTGCAACGTTGCAGTAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGCTAAACGAAAAGGAGTACGCCTACGACATGCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGTTTTTCATGTAGAAAGCGCAGAGACGATTGAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATATTATACCTGTTTACGCCACTCATGCCGCTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTTCCAAAACTTCGGCCGTTGACAGGTTCGCGTCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACAATAGCGTGCATGAGGCATTGGCAAGCGAGGATA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGGGAATTTTAAGTACATAAGTTTTGCACGGGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTACCTAGCCGTAGTTCTCTCTTTTGCCGGGGTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCTTCGTACTTATCGTCTGCCGGGAGTACCGCTAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TACTTTTTGGTGACGCGCGAAACTAAAAACGGTGTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAAGCGCCGAGCATTAAGCCGCGCACCATCACCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCCAGGTTTTCGGCAAGGGCTTTGATTTGGTCAATA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATAGCAGCTCTTCCGCTACCAACGTCCCTGCCTCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGCGTTCGTGTCTCCGTCGATGCGTCCCATCGGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGCACACGCAAGCAGGATGCCGTCCGTGTTGTCGTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACAATGCCGCCTTGTAGATGCTTGCGTCGTAGGTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGTTCAGCCACAAGTTGCGCTAATTTCGGGTGAAGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTGCCTCAGGTGCAACGGTTGACTGTGCGGGTTGCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGGAATAAGATGGAACACAACATGAACGGCATTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATAAAAAACAAGAGAAAAGACTGGAACCACAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGAGTCCTATGACTTGGAATCTACGCTCGAAGTCAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTTCACGTAGGTCAGATGCCGGCACCCGTGTTCAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGCAGATAGACCGGGACACAGTTCCAGGGTGGGCAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTGACGGCCCCGGCCACAAAAATCAACCTTTCAGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTGCAATCTGCTCATAAATCTTGCCGGTACGCCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATAAAGTTTCCTACCCACGTTTCGAGTACCGGGGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCCGCTACCGAAGGGTTGTAAATCCAGTTGCCTGTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATATCACCTTTTCCGTGGGGGTAATGCCCGTATTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAAAGCATCAACGGCAAAGTGACGCTGAAATTCCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATGAAGTAGCGCAGCGTGTCAAGTAAGTGGCCAAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CAACAAAAGATGCTGATAGTTTGACCAGGATTTTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGGTCAGCACTCCGTTTGGATTATTGGCATTATCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAACTTATTGGCCTTGTCGACGTTGGCCCGCGCCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCAGCGTTACAGTATTGACACGAATAACAATGCTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTGCGCCGACAACATACTTTTTGCCGGTATCGGAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAAAAAATAAAACAAGCAGAGAGCGCACCCCACGAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGCAAGGAAGCATTGGGGGTTAAGTTGCGATACT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGGCGCAGGCGGAAGCGGCTATCGTGGAGATTGTGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGATGGTTTTGGCGTAGGCACCTTTCCGGATAATAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAATCTGCGCGGGCGTGTAGCCTCGTTCCAAAAGGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGTCCACGACGGCAAACGGTAAGGTGTTCACCGTGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGTACAAAGCGATGCAGGCCTGCGATGTGTGGTAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CAGTTTTTTGCAGGCATTACGGCTGCCGGTTCCTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGGCGAGGCGGTTAAGAATTAGTTGCATCGGTTTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCAAAAGGTTGATATTGTTTTGCAGCACATTAAAGCT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCAATCAGTGCGGTATTGTGACGATCAATGATTTTCT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTGGATTGTTGGCATTATCAAGCGCCTGCCGTTCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TATAGTGCAGGGAGGTAAAGCACATAAATCGGAAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTATTACAATGCCGTTCTAAAAGACATTGCCGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTATCCCTGAAGGTTGAGGGACTAATTCTTCCTGCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTGTTAAACGTTGTTCTAAGCAGTGCGGCTCGTGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCGTTAAACTGCCGACGTTTGGCAAGTGGTTTTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCCACTGGTAGCGTGTTCCGGTATAATTCCCCCCTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTACGCAAGTATATCAAAAGTATAGCCACTAATCCAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TACGACGGAAAGTAGATGTTGGTCCTATTAATTCCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TATAGTGCAGGGAGGTAAAGCACATAAATCGGAAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGGATTGATGAAAGGGCATAGCGTCTAATATAGCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CACTTTAACCGGGGTAAAAAATGTCTAACCTCTGCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTGGTTTGTATCGCTTCTTTGAGTGTTGCCCCTTCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATGAAGCCTGACGAGGCGGCTTTTCAGATCAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGGTCTTTCCAATGCAAGCGGTTATATTCCCAAGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTAGGCGGCCGGGCTTTAAGATTCGGTACAGTTCTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTAGGGCAAGAGGCTTTGAAACAGGCGTATTTCTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTGTTACACTTTTATGCTACCCGTTTAATAGCCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GCAGTTTTTTAAAAATAAGTTCATTGCTGCTGTCAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CATCCGCGTAACCCTGCCCCAAACTGCCCAAATACGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAAGTCTATGTAAGACTTCATCTTTTCTTTGATT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTAGGGTTTGATTTTGGCAATTCGTTTCAGTAATTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GAGACAAGACCTGTAAAACCTTTAATTTTCACTGAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTACGATAACATCCGAACTTTGCCATCCCCATGTAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACCGTAGACACCGAAAAAGCGATTCGCTCCTACTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGTGCTGGGCAAGGTGCAATTATTAAGGCAATAAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGGGAGAAAATTACGACTATCTATCCCGTTTGTGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCTTAGATAAATCTTTTTTTGTATCCTCAATTATAGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CAACTAAAATGACAAAAGCAGAAAAATTCTTATTAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGGTCAGGCCGTCCTGATAACGTGCGCCCAATTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGACCTAAGTGATGACAAAGACGATGACTTCAAAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATGTCATGAAGGGTATTAATTTCTACAACTTCTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATGATGTAACTCGGTGCGACAGCTACCTCATGGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCAGCGTTACAGTATTGACACGAATAACAATGCCGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCTTGACTGCCAACACCACTTCTTTCGGTTGACAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTGCTCCACACTTCGCAAACAGTTTCTTCCGGCAGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTAAAAATAAGTTTCTGTTTCTCAATCAGGGCAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAAAGTGGACTACAGCAACATTCAAAAGCTGGAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTGTCTATTTTCTTCAGGCGAACGGTGTTTGCCGCGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGGATGCCATATTGTCAAAGAAATCGTTTTGAGTAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAGCTGTTATTAAGTTATTAGTGTTGCTCTATACA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGACGCCTTGGCTGACCTTAACGACATTCCTTTTAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCCTGCGTGTCGCTTCACGTTCACAAAGAAACGGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGAAAGGTCTACGAGACCAACTTCAAATCAAAGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATGCGAAAGCCGCGCATGGAGGCTTCCGAATAGAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTTCTCAAAACTCGAGCCCGTCCCTAAAGGAGTAGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCATTTAATCGCCGAAACAAGGCTTTTCAGTATGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCGAAGTGACCGTGTACAGGTAGTTGAGTGTCCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACAATACAAGGCGAAAATTGCCGCCTGATAGTGAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGTAAAATTGAAAGGCTTTAAACTGTTGAGCAATG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GGCTTGGGTTGATGCAGCCACAAAACGGTACAACGAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCAAGCGCCACTGCTCATACTTGGCAAGTAGCGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAATTTGCAGACTATATCCCCGGTCTGCAAGCGGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGTTCTGTCAAATTGGCAAAAGCGTTAAGTTGCAGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGCGTCCGATTAGGGTTGCCTATCGGCTCCGTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGGCTTTCCGATGAATGGGTAGAGGTTAAAACTTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACATTGTAACCGTTACAATTCCTTAATATGGCACT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GAGGATGAATACGAATAAGGTAAAATTCAAAAAAGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GGCTTAAAGGAGCACCAAGCCAAGTATCTCAAATTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTAGGCAGGAAGGTATAGGCTGATTGGTGCAGCGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGATAATCCTGCCGGATGGGTAGTTGTAAAATTTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCAGATTTTTCATCGACATTTAATTTTGTATCTGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGAAAATTCGTAGCCGACTGCAGTAAAATAGGTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CGTCTTACTTCCTCACGTTTTACCTGTGCCTCGGTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GACGCCAACATTTGAAGAAGTGCTACAGGCACAAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAT

>NC_015703|11|2|5772288-5784494|CRT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGGTCGATGCCGCACAGAAGGAGTTTGAGGGCATCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTTCGGGGTTGGTTTATATTCCGGTTTGATTTTGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGGGCAAAGAATCAAAACAGGCTTTTTTGTGAAGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CGTTGAATCCCTACCTGCTTTTAGGGTTTGAAATAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGGAAATTCAGCGCATTACGAAGGAGACGGCAGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGCTTTGAGCGACGAAACGATATTAGCCGCTGTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATCAGGGACGCAAAACTCGATGCACTGGATGCCGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTAAACCACACTCCCAACACTATAGCCCCTATCAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAACTTGCGGTGCTCACCAAAGAGATTCAGGCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGAACCCGAAGCGAAGCCGCCGCCGCCATTAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATATCGCTTTGGTGAGGTAGGAAAAAACAACGGTCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACAGTGCAGGCTGCAAGAGGGTTGGAGGACAATGGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTCCACATCCAAGCCAATGTAGAGGTAGGATTTCGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGTTTACCGCCAAAGTGGAGACGTTGACGGGACGCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAAAGGAGTAAAAACAGTTTCGCCCGGGTTTGTGTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTTTCAGCGACTCGCCAACTTTCAGCGACCCGTCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGTTAAGGGGGGAAATAAGAAGGTGCAGTTGCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTCACTTTCCGCGTGATCGGTGTTTCGGTAGTTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGCAGTACAATCAGGCACGCGTAAGGGTTGCGGAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTCATGCACAATCAGAAACTTGCCGAAGATGCCGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGACATTTTGAAATTTAAGCCCCTTAGCACTAGGGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATCAGGGACGCAAAACTCGATGCACTGGATGCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGACATTTTGAAATTTAAGCCCCTTAGCACTAGGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTCCCTTTTAAAAAGGAGAGCCTCATCCATAAAGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTCATACTCTATCTTCAGGAGTTTTTTCTTGAGGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTATATGCTGAACTACCTTCCCGATAATTGGATATGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGGTTTTTTCATGGTCCTCCACCTTCCAGCCGTACT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTACCATCAGGTTTTTTTACTGCACCCGCAGATTTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTCTTTGATGGTAGAGGTGTCGATGTTCATCTTGAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTATTCTCAAAAGATTTGAGTTACAAAGACAGCCTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGCCGACAAAACAAAAGGAGTTGTTAAGCTGTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACAGTGCCGCCTTGTAGATGCTTGCGTCGTAGGTCAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGTCGAGCGGTTGGCGTTCTGACTCTTAATATGCCT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CAACAGGTAAAACGGCCTAATGGCATACGAGGAACTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTGTCTACGTCTGAATAATGGGCCTTGTAGTTTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTATATTTTATTTGGGGAAAAACCGGAAGAACCCCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GCTCATACCACACTCCCAACACTATAGCCCCTATCAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGGGTTACGGACGGGTCGTACTGACAGGTTTTTACT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAAGCCTTGTTGAAAAAGCGTTGGTCGTATTCGAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCTTTTCTATGGCTCCATTTGCAAATCTTGCTGAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGTTAAATGACGAACTCATTAAAATAAATTACAAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGAAAGTTGCTGATTATCGTAAATCATAGTTATGATTG
CTTTAAATCGTACCTTTTTGGAATTGAAAC	TGTCAGGAAGCTTTTTGGTTGGATGAATTGGATATA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCTTTTGCCCCATTTTGGGCGTGTAGGTTATTTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACGTTGTATTGGGTTAGATTGCAGTCAGTCCGGTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCCCAACGCCCGCAGCCGGTACATTTGCGAATGTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGATGGCCGTCAGCACTCAATTGTTGAGGGTAAAAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGAAAGTTGCTGATTATCGTAAATCATAGTTATGAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCCCGGGCAGTCGTGGCATAACTACGGGCTTGCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAAAATGAGTATTGCAATGGAATTAACGATTTATG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAGATATTTTTACCTTCTATTTCGTCCGAAGCAAGCTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCGCGCAGTATGGGGGGATATACTGCAACATTGCGCT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACCTGCCGAAACTGCTACTGCCTCTGTTGTAGAGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGGGCGGCTGTTTTGGCGGTTTCAAACGCCTTCCGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CGTCCCGCGCCCTGACTTTCCTAAACTCTGTTGGTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTTGTTGGATAGACGAATTGGTGTTGCCCGCTCCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGTCCACGACGGCAAACGGCAAAGTATTGACCGTGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTCCTTCCAATCTTCTTCCGTGAACGCGTCGGCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GCGACAGGCAATAGAGTCGTTTGGCAGCGAAATAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGCCGACTATCTAACGAATATATTCACGGAGTTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTAACCCTTGCGACATATAATCCCGCTGCGGTTGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGTATTAGTTATTGATTGGTTGCTTTGATTTGTCGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAAAAAGGCGCGTGCATTTCTCAATATCAACGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACACGTCCGACGTGCTGAACAAAGTAACGGGCGTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCACCAACTGCAAGTCATACCCGTTGGCGGTTCGGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGCCGTCGCAGGAGACACTCCGAGCAGCATTGCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATACCGTACCTTTTGTTATGACCACGCCCGCCCCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCCGACGGATTCATCTGAAGTGCAACGTTGCAGTAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGCTAAACGAAAAGGAGTACGCCTACGACATGCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGTTTTTCATGTAGAAAGCGCAGAGACGATTGAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATATTATACCTGTTTACGCCACTCATGCCGCTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTTCCAAAACTTCGGCCGTTGACAGGTTCGCGTCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACAATAGCGTGCATGAGGCATTGGCAAGCGAGGATA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGGGAATTTTAAGTACATAAGTTTTGCACGGGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTACCTAGCCGTAGTTCTCTCTTTTGCCGGGGTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCTTCGTACTTATCGTCTGCCGGGAGTACCGCTAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TACTTTTTGGTGACGCGCGAAACTAAAAACGGTGTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAAGCGCCGAGCATTAAGCCGCGCACCATCACCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCCAGGTTTTCGGCAAGGGCTTTGATTTGGTCAATA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATAGCAGCTCTTCCGCTACCAACGTCCCTGCCTCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGCGTTCGTGTCTCCGTCGATGCGTCCCATCGGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGCACACGCAAGCAGGATGCCGTCCGTGTTGTCGTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACAATGCCGCCTTGTAGATGCTTGCGTCGTAGGTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGTTCAGCCACAAGTTGCGCTAATTTCGGGTGAAGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTGCCTCAGGTGCAACGGTTGACTGTGCGGGTTGCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGGAATAAGATGGAACACAACATGAACGGCATTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATAAAAAACAAGAGAAAAGACTGGAACCACAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGAGTCCTATGACTTGGAATCTACGCTCGAAGTCAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACTTCACGTAGGTCAGATGCCGGCACCCGTGTTCAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGAAGCGGGGTTTCAGATCAGTACGGTCGAACAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGCAGATAGACCGGGACACAGTTCCAGGGTGGGCAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATTGACGGCCCCGGCCACAAAAATCAACCTTTCAGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTGCAATCTGCTCATAAATCTTGCCGGTACGCCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATAAAGTTTCCTACCCACGTTTCGAGTACCGGGGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCCGCTACCGAAGGGTTGTAAATCCAGTTGCCTGTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATATCACCTTTTCCGTGGGGGTAATGCCCGTATTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAAAGCATCAACGGCAAAGTGACGCTGAAATTCCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATGAAGTAGCGCAGCGTGTCAAGTAAGTGGCCAAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CAACAAAAGATGCTGATAGTTTGACCAGGATTTTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGGTCAGCACTCCGTTTGGATTATTGGCATTATCA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAACTTATTGGCCTTGTCGACGTTGGCCCGCGCCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCAGCGTTACAGTATTGACACGAATAACAATGCTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTGCGCCGACAACATACTTTTTGCCGGTATCGGAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAAAAAATAAAACAAGCAGAGAGCGCACCCCACGAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGCAAGGAAGCATTGGGGGTTAAGTTGCGATACT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGGCGCAGGCGGAAGCGGCTATCGTGGAGATTGTGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGATGGTTTTGGCGTAGGCACCTTTCCGGATAATAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAATCTGCGCGGGCGTGTAGCCTCGTTCCAAAAGGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGTCCACGACGGCAAACGGTAAGGTGTTCACCGTGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGTACAAAGCGATGCAGGCCTGCGATGTGTGGTAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CAGTTTTTTGCAGGCATTACGGCTGCCGGTTCCTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGGCGAGGCGGTTAAGAATTAGTTGCATCGGTTTG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCAAAAGGTTGATATTGTTTTGCAGCACATTAAAGCT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCAATCAGTGCGGTATTGTGACGATCAATGATTTTCT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTGGATTGTTGGCATTATCAAGCGCCTGCCGTTCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TATAGTGCAGGGAGGTAAAGCACATAAATCGGAAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTATTACAATGCCGTTCTAAAAGACATTGCCGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTTATCCCTGAAGGTTGAGGGACTAATTCTTCCTGCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTGTTAAACGTTGTTCTAAGCAGTGCGGCTCGTGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCGTTAAACTGCCGACGTTTGGCAAGTGGTTTTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CCCACTGGTAGCGTGTTCCGGTATAATTCCCCCCTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTACGCAAGTATATCAAAAGTATAGCCACTAATCCAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TACGACGGAAAGTAGATGTTGGTCCTATTAATTCCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TATAGTGCAGGGAGGTAAAGCACATAAATCGGAAC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGGATTGATGAAAGGGCATAGCGTCTAATATAGCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CACTTTAACCGGGGTAAAAAATGTCTAACCTCTGCTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTGGTTTGTATCGCTTCTTTGAGTGTTGCCCCTTCCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAATGAAGCCTGACGAGGCGGCTTTTCAGATCAAAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGGTCTTTCCAATGCAAGCGGTTATATTCCCAAGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTAGGCGGCCGGGCTTTAAGATTCGGTACAGTTCTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTAGGGCAAGAGGCTTTGAAACAGGCGTATTTCTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTGTTACACTTTTATGCTACCCGTTTAATAGCCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GCAGTTTTTTAAAAATAAGTTCATTGCTGCTGTCAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CATCCGCGTAACCCTGCCCCAAACTGCCCAAATACGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAAGTCTATGTAAGACTTCATCTTTTCTTTGATT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTAGGGTTTGATTTTGGCAATTCGTTTCAGTAATTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GAGACAAGACCTGTAAAACCTTTAATTTTCACTGAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTACGATAACATCCGAACTTTGCCATCCCCATGTAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACCGTAGACACCGAAAAAGCGATTCGCTCCTACTA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGTGCTGGGCAAGGTGCAATTATTAAGGCAATAAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTGGGAGAAAATTACGACTATCTATCCCGTTTGTGCG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCTTAGATAAATCTTTTTTTGTATCCTCAATTATAGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGCCAAAGAATGCGATCGTGTTTTCAGTCGCACC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGCCTCCAAGGTGAAGGCATAGGGAAGTTCTAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CAACTAAAATGACAAAAGCAGAAAAATTCTTATTAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ACGGTCAGGCCGTCCTGATAACGTGCGCCCAATTGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGACCTAAGTGATGACAAAGACGATGACTTCAAAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATGTCATGAAGGGTATTAATTTCTACAACTTCTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATGATGTAACTCGGTGCGACAGCTACCTCATGGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCAGCGTTACAGTATTGACACGAATAACAATGCCGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCTTGACTGCCAACACCACTTCTTTCGGTTGACAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTGCTCCACACTTCGCAAACAGTTTCTTCCGGCAGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTTAAAAATAAGTTTCTGTTTCTCAATCAGGGCAAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAGAAAGTGGACTACAGCAACATTCAAAAGCTGGAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CTGTCTATTTTCTTCAGGCGAACGGTGTTTGCCGCGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGGATGCCATATTGTCAAAGAAATCGTTTTGAGTAG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TAGCTGTTATTAAGTTATTAGTGTTGCTCTATACA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATGACGCCTTGGCTGACCTTAACGACATTCCTTTTAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCCTGCGTGTCGCTTCACGTTCACAAAGAAACGGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TGCGAAAGGTCTACGAGACCAACTTCAAATCAAAGC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AATGCGAAAGCCGCGCATGGAGGCTTCCGAATAGAT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GTTCTCAAAACTCGAGCCCGTCCCTAAAGGAGTAGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCATTTAATCGCCGAAACAAGGCTTTTCAGTATGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCGAAGTGACCGTGTACAGGTAGTTGAGTGTCCC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACAATACAAGGCGAAAATTGCCGCCTGATAGTGAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGTAAAATTGAAAGGCTTTAAACTGTTGAGCAATG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GGCTTGGGTTGATGCAGCCACAAAACGGTACAACGAA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTCAAGCGCCACTGCTCATACTTGGCAAGTAGCGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAATTTGCAGACTATATCCCCGGTCTGCAAGCGGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGTTCTGTCAAATTGGCAAAAGCGTTAAGTTGCAGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGCGTCCGATTAGGGTTGCCTATCGGCTCCGTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AGGCTTTCCGATGAATGGGTAGAGGTTAAAACTTCGG
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AACATTGTAACCGTTACAATTCCTTAATATGGCACT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GAGGATGAATACGAATAAGGTAAAATTCAAAAAAGA
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GGCTTAAAGGAGCACCAAGCCAAGTATCTCAAATTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TTAGGCAGGAAGGTATAGGCTGATTGGTGCAGCGTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	AAAGATAATCCTGCCGGATGGGTAGTTGTAAAATTTC
GCTTTAATCGTACCTTTTTGGAATTGAAAC	ATCAGATTTTTCATCGACATTTAATTTTGTATCTGT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	TCGAAAATTCGTAGCCGACTGCAGTAAAATAGGTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	CGTCTTACTTCCTCACGTTTTACCTGTGCCTCGGTTT
GCTTTAATCGTACCTTTTTGGAATTGAAAC	GACGCCAACATTTGAAGAAGTGCTACAGGCACAAAA
GCTTTAATCGTACCTTTTTGGAATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013930586.1\|5795151_5798091_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_015703.1\|WP_013930570.1\|5767375_5768431_+\|hypothetical-protein	cas7	mkCas0088_cas7_CAS-I-B	gnl\|CDD\|274215
NC_015703.1\|WP_013930585.1\|5794365_5794749_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NC_015703.1\|WP_013930583.1\|5790288_5791347_-\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|224007
NC_015703.1\|WP_013930569.1\|5764828_5766229_+\|hypothetical-protein	cas8b6	mkCas0111_cas8b6_CAS-I-B	unknown
NC_015703.1\|WP_013930566.1\|5761429_5762092_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_015703.1\|WP_013930578.1\|5785677_5786157_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370597
NC_015703.1\|WP_013930575.1\|5771789_5772053_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_015703.1\|WP_013930579.1\|5786171_5787428_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|239448
NC_015703.1\|WP_013930576.1\|5784567_5785389_-\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015703.1\|WP_013930581.1\|5788117_5789218_-\|peptidase-C1	unknown	unknown	gnl\|CDD\|239110
NC_015703.1\|WP_013930568.1\|5762681_5764832_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015703.1\|WP_013930572.1\|5769049_5770210_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_015703.1\|WP_013930574.1\|5770745_5771750_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_015703.1\|WP_041343860.1\|5791483_5794006_-\|dehydrogenase	unknown	unknown	gnl\|CDD\|274225
NC_015703.1\|WP_013930573.1\|5770206_5770749_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_015703.1\|WP_013930580.1\|5787523_5787988_-\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|226914
NC_015703.1\|WP_013930582.1\|5789472_5790258_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235500
NC_015703.1\|WP_013930571.1\|5768487_5768979_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223414
NC_015703.1\|WP_013930567.1\|5762100_5762682_+\|hypothetical-protein	cas5	mkCas0069_cas5_CAS-I-B	unknown

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013930586.1\|5795151_5798091_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.7016e-37
NC_015703.1\|WP_013930570.1\|5767375_5768431_+\|hypothetical-protein	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	0.000288787
NC_015703.1\|WP_013930585.1\|5794365_5794749_-\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	1.29636e-35
NC_015703.1\|WP_013930583.1\|5790288_5791347_-\|TIM-barrel-protein	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	5.56514e-10
NC_015703.1\|WP_013930568.1\|5762681_5764832_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.77484e-54
NC_015703.1\|WP_013930566.1\|5761429_5762092_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.07813e-18
NC_015703.1\|WP_013930578.1\|5785677_5786157_+\|hypothetical-protein	gnl\|CDD\|370597	pfam09643, YopX, YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	0.00224379
NC_015703.1\|WP_013930575.1\|5771789_5772053_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.1912e-28
NC_015703.1\|WP_013930576.1\|5784567_5785389_-\|LexA-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.12297e-12
NC_015703.1\|WP_013930572.1\|5769049_5770210_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	3.27535e-57
NC_015703.1\|WP_013930581.1\|5788117_5789218_-\|peptidase-C1	gnl\|CDD\|239110	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues.	6.29786e-22
NC_015703.1\|WP_013930579.1\|5786171_5787428_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|239448	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.	0
NC_015703.1\|WP_013930574.1\|5770745_5771750_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.63272e-163
NC_015703.1\|WP_041343860.1\|5791483_5794006_-\|dehydrogenase	gnl\|CDD\|274225	TIGR02604, Piru_Ver_Nterm, putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) (SP\|Q44091) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.	9.4485e-59
NC_015703.1\|WP_013930573.1\|5770206_5770749_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.50143e-51
NC_015703.1\|WP_013930580.1\|5787523_5787988_-\|DUF962-domain-containing-protein	gnl\|CDD\|226914	COG4539, COG4539, Predicted membrane protein [Function unknown].	3.0261e-19
NC_015703.1\|WP_013930582.1\|5789472_5790258_-\|glucose-1-dehydrogenase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	5.29547e-80
NC_015703.1\|WP_013930571.1\|5768487_5768979_+\|hypothetical-protein	gnl\|CDD\|223414	COG0337, AroB, 3-dehydroquinate synthetase [Amino acid transport and metabolism].	0.00827666

>NC_015703.1|WP_013930575.1|5771789_5772053_+|CRISPR-associated-endonuclease-Cas2
MYVILVYDIGEKRVGKMLKHCRKYLNWIQNSVFEGEITEVKLKEMVSIARGIMNEEQDSLILFKSRDERWLDKQVIGVERMSTDTFL
>NC_015703.1|WP_013930574.1|5770745_5771750_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKKSYYLFNPGRLSRKDNTLCFTPVDEQGNEGQPRHIPVEGVDNLYCFGSLDANSAMYNFLGKNHVSVHFFDYYEHYTGSFMAKEYLLAGKMQVEQTRYYLSDKKRLPLARTLVEGAAFNMGKNLKYYQGRGKDVTESLARIENYTTLIATATKVDELMGIEGNIRQAYYAAFGPIINDFEMGNRSKQPPQNEVNALISFGNMMCYTVCLDQIYHTQLNPTISFLHEPGARRYSLALDLSEIFKPLLVDRTIFSVLNKKQLQANDFRQEMNRCVLKDSARKVFAQAFEDRLKETFKHRSLGRSVSYRHLVKLECYKLSKHLLGMEEYKPFKMLW
>NC_015703.1|WP_013930573.1|5770206_5770749_+|CRISPR-associated-protein-Cas4
MNINATLVNYYFLCHRKLWLHAHTIRMEHTSEIVYEGKLIGEESYPQRAEKNQEVEISIPYPPLGADGALTAKIDFFDAKKGIVHETKKSNAKEKAHTAQVQFYLYLLRKNGIAVSYGLIEYPKLRLTERVTLDEEEEKQVEGWVNEIAELLAQAHCPARLPVSKCRSCSYFDFCWIDEP
>NC_015703.1|WP_013930572.1|5769049_5770210_+|ATP-binding-protein
MEVLRNITPLLNEYLTIFPAVGIVGPRQVGKTTLAKSLAKNQAIHYLDLETAADRQKLTDPALYLEQHLDKLVIFDEIQQMPELFAELRGLIDQDRRAGRFLLLGSASPELVRRSADSLAGRIGYIELTPLLLGEIEENDLMKLWSRGGFPLAFLTPSDRSSMIWRKNFIRTYIEKDLAMLGLSAESRTIERFWRMLASSHANLWNAENIARSMGLTAPTVNRYLDFMEGAFLVRRLMPYSVNIQKRLVKSPKIYLRDSGILHAFKESDAMESLLGDPQVGASWEGFVIEQIINALPEGLQPYFYRTHQGTECDLVLEKNGRIKAAIEIKLSSAPTIEKGFRVALEDLNPEKAFVIGRVKESYPFQEKGWVVSLETFLQQFLPQIT
>NC_015703.1|WP_013930571.1|5768487_5768979_+|hypothetical-protein
MDQYLQQLLEDLRAAHKPETEFVPPALTEDEGIEAHFAEVERYLSGEYDQRISDVLGLMPEQFPPAERLTPEQMKSVAEAFTALLFSWNISTDLPDELPVEVAYPLLVTALDKKVYLADGGMVTIEFCPYAPWDCPFGELCQCKDVEADDIQEYKPGEDDFPF
>NC_015703.1|WP_013930570.1|5767375_5768431_+|hypothetical-protein
MNTIYIRTLKRAEHTVFCVTDGQKTYYDPQFDKYIPYSSGQQVKRSLIDSLCEAINQTPSPTTFLFDVNKQKGLDEGEVYGTCDPTYADQLFGGWMKAAKGGKDRTLKRRSPLSISAMRALHPLLAGTTRENMTFDRSERSNNEVIVRDEKGNKLSEEDIISFLEGKDRSLSRKWIKPSNKATGLFVADIAIDLRRLFSVTINSFEPEMADSTIEKLKSEGWIESKNVFGPCLVAPKTLRDEWIKGLAKAIIDWKITSNQARTFSLMDTLALSISDNANLIAGSIRAKLSEEDSDKAEPIIDESLKGVDTFITLQAGGYIRTKGEKVNALETAEAKLIELLSAFDYENQLK
>NC_015703.1|WP_013930569.1|5764828_5766229_+|hypothetical-protein
MITTVVGRTFLEAYNKKYQSNKSPKEFFEEVYFELFYNHSKYMQWITNSPFVQGIRTSDENIFGREIGKTTTKDEILQKQLFDGFEDQYGKNRVLLKTDRQKGKITYLLINDKLERQERLQNFHQKVENNEPDGSFALGFPASDIEGFASTSGLVSEVLIPTTNDDVYLSWIGSGLSIGVSGGFSILFDDSEITLQTFEGWKIYRKYLNDATLDKLRGNQINTWNGQWLTYSLDVDSFREDFDFTDLTDKKIFDVSTALVEVNTVNWSQLFFSLSQLYPNGSLTGYVHTLGDINKTIGFIPFYLKSGSRIIDIYKKLFGSTDTDKKRFEALFGMHIKRACELGSIGLQALKPDGITKYMGESKNLSFTKPEDTFNYYAYKTWLIAMLTKNKDEINEYTIELAETILRYKNQGTKNDRKTLIDSKLLASKTKKGFIESLTEMVKDLEGDDLDKIKKLKDEVHLLMGE
>NC_015703.1|WP_013930568.1|5762681_5764832_+|CRISPR-associated-helicase/endonuclease-Cas3
MNTLFAKSGPEWTTLAHHLLHVSIAAKAFAKHLGIDETLAFKGAILHDIGKAHPAFQQRLLGKSKSTKVFRHEISSLFFLSVFPENEHPALIEMVVGHHKSAKNDVGEKGLLDLENGYDYVDHHLGKWDEWSLYGIELLNQFGIEAKPIPVEQALQNLETAVKFTKRKSNERGYSEWRGLLMGADHFASAVIHDTQTFIERTFQKPNLSFYERTSPLYPLSQKTDYKSGKKHSIVVACTGAGKTDYLFKRCKGRVFYTLPFQASINAMFKRVAKDLEKTNPNLDIRVLHGASTVVKRKKDEEESVLQSLFGSAVKILTPHQLAALAFGLKGYEALLLDLKGCDIILDEIHTYTGVSQAIVLKLVEILKIIDCRIHIGTATMPSVLYHKILHILGDDVLEVCLEEAELDQFDRHRTHKLATFEDSQGVIFDAIQKSEKVLVVLNQVEKSQVVYDSLKKIYPNIPILLLHSRFRRGDRNDKERQLIGLDDFGEPTGEFNTSNEACIVVSTQIVEVSLDISFDVMVTETAPLDAMVQRFGRVNRKRTLDTIGKIKNVYIIAPPEGKKEARPYDPDILQKSFNALSDNEVLKERDLQNKIDTVFTEIDFLNIEEHSKFKSDGRITIDKLTHVSKSILFELLDIDSVACIREADQEEYETSYFERRLELEIPVRYFSVHKMNQSEKGNKPFIIPDKAYDMEKGLMLKSIKEENLDSKYQLL
>NC_015703.1|WP_013930567.1|5762100_5762682_+|hypothetical-protein
MLYVVKYSGPFGFIKPWTAVRDSETFSQQFLTPSIVEGIEKKLFPELLGVNGIQKIVGHRLSYSQISSQQEVIQTRGWNSTRQGKQFLFDRPKAILIRGILHEPILFLAFKLKEDAEQAFAQHICLCRNEDMLFPESIEVIQEEAFELDTEKFAGYELVFKKTEKAFLVGYHRITNEPMYGWLKIIGSPVKYY
>NC_015703.1|WP_013930566.1|5761429_5762092_+|CRISPR-associated-endoribonuclease-Cas6
MRIHLKISANKAPVPFDHLPYLVGAFHKWLGQNELHGDVSLHSFSWLNGGKGTAKGLIFETGATWFISAFDETVIKQLIIGIQDSPEICFGMTVREIMIQETPDFESPKRFTLNSPVLLKGHDTPKTQKKHLEFSDPESDEALTKILTNKLTKAGLDSTGVKVYFDRTYQNAKTKLVNYRGIGNKASICPVIVEGTPEQIGFAWNVGMGHSTGIGFGALN
>NC_015703.1|WP_013930576.1|5784567_5785389_-|LexA-family-transcriptional-regulator
MYVSCNLIFLRNREKKSQNEIADAVGIGRGSYSQYERGRSMPPMDVLVRLADLFHLSLDTLVRKNLAVLRSSELEELFNASVQSAKGIHLRILPISVGIDNKDNVEVVPKKARAGYIGGGHGDVGFISELTRFRLPILPENRKYRMFQIEGDSMYPIPDGAYILGSYVQNWFSVKENKSYIFITAEDIVFKTVTAVPNVKAADPAFILSSLNSLYAPYRVKLEEVLEIWEFTLFMSTDVPEGESDVQFGEVLNEIRGLKREFLTLKLDITAGK
>NC_015703.1|WP_013930578.1|5785677_5786157_+|hypothetical-protein
MERLLNTGNTFRVWDGKKIHYSSVKPSLEGLPVQLLLNDESSFVLPDSPEFRNNQPVKRFTELKFIGISDRNGEDLYESDIVYYLGEKFVLLWNEPARTYHMYAVNENKLKSEGPVRCSFEEDLVRIGNLFENPDMLTPFRVRFLYTYNRKDKTEQQVA
>NC_015703.1|WP_013930579.1|5786171_5787428_-|alpha-hydroxy-acid-oxidizing-protein
MNAFERQKKIYLEGASGTVSPIPVDARLLEIKAQKAMSPQAAAYIAGGAGHGDTMLENRRAFERWRILPRMLRDVSTRDVSITLFGKQYPYPLLLAPIGVLEMVHREADLAVAKAAAAIGIPYIFSNQASVSMEECAAVMGEQPRWFQLYWSKSDELVASFVQRAEQSGCEAIVVTLDTTLLGWRTQDLELAYLPFLRGLGIAQYTSDPVFRRLLNEPDPTPAPTPKFTYDALRTLWSAVRQYPGSFLENAKSGYPRKAVKKFIDIYTRPSLTWENLAYLRQRTRLPILLKGILHPDDALRALDHGIDGLVISNHGGRQVDGAVGTLDMLPRISEVIQGRIPLLLDSGVRGGADIFKALALGASAVCLGRPYVYGLTLGGSEGIQQVLANYLADFDLTMALAGCRSINEIGPESVLKT
>NC_015703.1|WP_013930580.1|5787523_5787988_-|DUF962-domain-containing-protein
MRSIDAWLDEYGESHRNPTNKLVHWICVPSIFFSIVGMLYSVKLPFLIADDLPLNLGMVILAMVTVYYIRLSLTLSVGLIIFSGGCLFLAQQIEDQGWTLWQVCIGIFVMAWIGQFWGHKVEGKKPSFFKDLQFLMIGPAWLMHFIYKKAGIPY
>NC_015703.1|WP_013930581.1|5788117_5789218_-|peptidase-C1
MSQRIGGYRIGKIPDDVTHKKAKKSPELPPKVDLRKFMTSVEMQVGNSCVANSFAGAYEYLAKRTLGEAADVSRLFIYYNARYYAGEQENDNGSMMYNAIEGLKEYGACSEEFWPNDKDRITEEPDEDSYHHGSNFRIVEAEFIKTELNLWRQTLAEGHPIAFALNTFESFDSANRNKGRVIMPKPADNVRKTHGWHAMLCVGYSDPDKMFIVRNSWGEKWGDSGYCYIPYDYVMHKEYNGHDSWIVKSVENLDFSEGIADDSEESSFYDEDRTYLSDFSIQVEDPEDFAAQLEALCQEYVTEENEYYFDYETIEKDGADYLAITDFEILTDVYEDFLDDLQSLCEENAIDGDYDYTLVGAEDEEE
>NC_015703.1|WP_013930582.1|5789472_5790258_-|glucose-1-dehydrogenase
MDRETFPGIKQFDLTGKAAIITGGSKGLGLAMAAGLASAGANLLIVNRNAAEGVQAARTLSEEFGIKAFSFSADTTDVAQTEAMAKAAMDAFGRIDILINSAGINIRGAIDEVTPEDFKKVMDVNVNGTWLSARAVTPYMKQQQRGSIINMASTLGLVGLANRTPYTSSKGAVVQMTRALALELAPFHINVNAICPGPFLTEMNLPIADTEESKKFIVGATALGRWGLLREIQGAAIFLASDAASYMVGSILTVDGGWTAK
>NC_015703.1|WP_013930583.1|5790288_5791347_-|TIM-barrel-protein
MKRRQFLQSTAMGFGALSLPEFPKGAASNRMGIVVHSYASRWNSKVESAKYPGFQNAVDLLEHCHQIGAGGMQVVVKDWSVDFAKKVRDRREKLGLYVEGSIGVPKKAEDVPAFENEVKNAREAGAQILRTVCSGGRRYEIFHSEQAFLDFKKSALVSLQLAEPILRKYKVKLAVENHKDWQANDLVAALKQLNSEWIGATLDFGNNIALMEDSAHVVQALAPYMFSTHIKDMAVEEYPDGFLLSEVPLGKGILDLPKLVGICQKHNPDITFSLEMITRDPLEIPCLKPDYWATFEDVSGREFAQALQMIRKNKSASPLPRVAQLRPEERLAIEESNIIESLKYSKEKLGLH
>NC_015703.1|WP_041343860.1|5791483_5794006_-|dehydrogenase
MASACIGLIGAASLFTLLGTEQKDVPAPAKTPIEEAKTFQLEPGFKIQLVAAEPMVQAPVVVTFDEDGRLWVVEMRGFMPTIDGEGEDKPVGRISVLEDTNGDGTMDRSTVFLDNLIMPRAIAPVKGGALVAANNSLWLAEDKDGNLKAESKLLLDSTYARNGLPEHTDNGLLRNSDNWYYNAKSRLRYRLADGKWLRDSTEFRGQWGMTHDDEGRLYYNYNWSQLHGDLVPPNYLSRNKNHTPTTGIDHGFTLDRRVYPIRPNPAVNRGYIPGTLDASGRLLEFTAACSPTVLRGGVFPQEYRGNVFVCEPSGNLIKRNVVEKNGFMVSARDPHPGKEFLASTDERFRPVALTVGPDGVLYVADMYRGLIQHGAYVTPYLREQTLARKLMQPVNRGRIWRIVPTDWKPSKPKKRSTASTAELVALLSHPDGWQRDMAQRLLVERRDAQSIPLVRELALNGTNALGRFHALWTLEGLNAGSSEVLFTLLAEQNSLLSATALRLLEPFAQQSPAVRTRLQQVILSQWDKVTPEQALQMALSAYVLEPNAAQQLLAGLAERYCSFPLMRDAVMSSLYNREYVFLTSLLKSPQWQAQHPDKEILLEMLTTAVVKKHDVKEMSALLNLLDVDRASFGWHRKVILTALSIQGKNRRLKPLPLAEAPALFSRTDWEPQQKTRLQTVSALFEWPGHAAQAANVQQSLLNEEQQQQFALGRQHYLTTCAGCHGSDGAGLSRFGPPLIESSWVLGDEKRLALIVLHGMEGPVEVAGKQYDVPDILPVMPSHSTMDDGAITAILMYIRNEWGNNAGPVSKGLVGKTRHTSQGRVVPWTAQELNRYLANTK
>NC_015703.1|WP_013930585.1|5794365_5794749_-|RNA-binding-protein
MNIYVANVPFKANDDELRELFEEFGEVSSARIIMDKFTGKSRGFAFVEMPNDDEAKQAISQLNDFDFMGKVLVVNEARPREDRPRTGGGGGFGGGNRGGGGFGGGGGSRGGYGGGGGGRDNDFKKRW
>NC_015703.1|WP_013930586.1|5795151_5798091_+|insulinase-family-protein
MKKTTLSLIFLFTTLVQVVAQPKAYEWKTADAAGYPYRYVTNDPMKARFYTLKNGLTVILSVNKKEPRIFSFIATRAGSNTDPRTNTGLAHYLEHMLFKGTDKFGTLDWAKEKPLLDQIDALYEKYNKTTDTTERKKLYREIDRVSGEAAKFAIANEYDKMMASMGSQNTNAFTSYEVTAYMEDLPANALDRYLAVQAERFRQPVLRIFHTELEAVYEEKNRSLDNDPWKVQEALYAALFPTHNYGQQTTIGTIEHLKNPSLVEIRNYYNKYYVPNNMAVLLVGDLNPDEVIKKVDAALGYLQSKPVEQYTPAPEAPLTAVQVREVYGPTPENVRIGFRLPTAVNNLKTGAVITICDELMSNSAAGLIDLNLNKQQKILGGSSTVDFNKDYSVWTLSGRPKQGQALEEVKNLLIGEVQKLKKGDFDDNVIASIVSNYKLNAIRQLENNYSRINPLLESFIASKGEDWHNEVKKLDALSTVTKGDVVAFANEHFKDNYVVVYKHKGPDKNIVKVDKPEITPVEVNREAQSPFLSKVNSLPMDDIKPVWLDYRKDFQKSKAGAAEVLYVKNTENELFRLGYRFPMGTYHNKLLPIATQYLQFLSTDKYSAEQISKEFFNLACTYTINSSGEYTTVRLSGLQENFEKGARLLEHLLKNCKANDEALEQLKGRLMKARADAKLNKGAIMQGLMSYAQYGPKNPYNNQLSDSELKNLTSTQLITLLHDLFSYQHQVIYYGPQPLAAFTEKIKAVHPLAQFKPIPALNDFKQVEQTATQVLFADYDMVQAEISWVRNTDQFSPALAPTVELFNNYFGGGMASIVFQTLRESKALAYSTYAFYGVPQKKDQKYTLTGYIGSQADKLNEAIAGMNELLNQLPESEKMLETAKVSIRKNYQTDRILQDAIIYNYLNAQDLGLTTDERKLIYEQLDKLTFKDLQKFSSTNLANKPYTYCIVASEKRIKSDDLKKYGEVKKLSLEEIFGY

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Crispr_ID: NC_015703_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_12

5968496-5968584

Orphan

Consensus_repeat	Method
CCTTTGAAAGACGGGATGACCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_12

>merge|NC_015703|12|5968496-5968584|CRISPRCasFinder
CCTTTGAAAGACGGGATGACCGCAGCGAAAGACCTTACGACCGTGAAAAGCGGAATTCTGATAAGTCCTTTGAAAGACGGGATGACCGT

>NC_015703|12|12|5968496-5968584|CRISPRCasFinder
CCTTTGAAAGACGGGATGACCGC	AGCGAAAGACCTTACGACCGTGAAAAGCGGAATTCTGATAAGT
CCTTTGAAAGACGGGATGACCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013930698.1\|5939711_5949146_-\|tandem-95-repeat-protein	unknown	unknown	gnl\|CDD\|380078
NC_015703.1\|WP_013930699.1\|5949350_5955887_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275366
NC_015703.1\|WP_081469304.1\|5959132_5961106_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_015703.1\|WP_169704902.1\|5974778_5974919_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_081469305.1\|5978623_5979028_+\|DUF4174-domain-containing-protein	unknown	unknown	gnl\|CDD\|379363
NC_015703.1\|WP_041341682.1\|5965779_5967750_-\|acetoacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|235134
NC_015703.1\|WP_013930709.1\|5972300_5974574_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_015703.1\|WP_013930700.1\|5956056_5956794_-\|hypothetical-protein	unknown	unknown	unknown
NC_015703.1\|WP_013930708.1\|5970892_5972266_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213031
NC_015703.1\|WP_013930713.1\|5976967_5977699_-\|NIPSNAP-family-protein	unknown	unknown	gnl\|CDD\|311781
NC_015703.1\|WP_013930714.1\|5977750_5978605_+\|glycerophosphodiester-phosphodiesterase-family-protein	unknown	unknown	gnl\|CDD\|176509
NC_015703.1\|WP_013930702.1\|5958317_5959130_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_015703.1\|WP_013930705.1\|5963515_5964244_-\|phenylalanine-4-monooxygenase	unknown	unknown	gnl\|CDD\|237020
NC_015703.1\|WP_013930697.1\|5938387_5939635_-\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|307488
NC_015703.1\|WP_013930712.1\|5975970_5976828_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
NC_015703.1\|WP_041341678.1\|5961205_5963143_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_015703.1\|WP_013930711.1\|5975102_5975966_+\|alpha-1,2-fucosyltransferase	unknown	unknown	gnl\|CDD\|211387
NC_015703.1\|WP_169704900.1\|5969684_5970848_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_015703.1\|WP_081469306.1\|5979076_5979943_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NC_015703.1\|WP_013930706.1\|5964334_5965468_-\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|273528

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013930698.1\|5939711_5949146_-\|tandem-95-repeat-protein	gnl\|CDD\|380078	pfam17963, Big_9, Bacterial Ig domain. This entry represents a wide variety of bacterial Ig domains.	2.48684e-14
NC_015703.1\|WP_013930699.1\|5949350_5955887_-\|hypothetical-protein	gnl\|CDD\|275366	sd00002, TSP3, Calcium-binding Thrombospondin type 3 (TSP3) repeat. TSP3 repeats of the vertebrate thrombospondin (TSP)-1,-2,-3,-4 and TSP-5/also known as COMP (cartilage oligomeric matrix protein), and related proteins. These short aspartate-rich repeats are a continuous series of calcium binding sites that can be divided into two sequence motifs: N-type and C-type. N-type and C-type motifs are distinguished by their sequence length, calcium ion binding, and their interactions with water molecules. C-type motifs are higher affinity binding sites compared to N-type motifs.	3.05877e-05
NC_015703.1\|WP_081469304.1\|5959132_5961106_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.07472e-23
NC_015703.1\|WP_081469305.1\|5978623_5979028_+\|DUF4174-domain-containing-protein	gnl\|CDD\|379363	pfam13778, DUF4174, Domain of unknown function (DUF4174). This domain of unknown function is found in a putative tumor suppressor gene and in a ligand for the the urokinase-type plasminogen activator receptor, which plays a role in cellular migration and adhesion.	9.49002e-36
NC_015703.1\|WP_041341682.1\|5965779_5967750_-\|acetoacetate--CoA-ligase	gnl\|CDD\|235134	PRK03584, PRK03584, acetoacetate--CoA ligase.	0
NC_015703.1\|WP_013930709.1\|5972300_5974574_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.13824e-50
NC_015703.1\|WP_013930712.1\|5975970_5976828_-\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	4.16879e-09
NC_015703.1\|WP_013930708.1\|5970892_5972266_-\|hypothetical-protein	gnl\|CDD\|213031	cd12105, HmuY, Bacterial proteins similar to Porphyromonas gingivalis HmuY. HmuY is a hemophore that scavenges heme from infected hosts and delivers it to the outer membrane receptor HmuR. Related but uncharacterized proteins do not appear to share the specific heme-binding site.	3.75264e-10
NC_015703.1\|WP_013930713.1\|5976967_5977699_-\|NIPSNAP-family-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	2.18639e-21
NC_015703.1\|WP_013930714.1\|5977750_5978605_+\|glycerophosphodiester-phosphodiesterase-family-protein	gnl\|CDD\|176509	cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.	2.61592e-72
NC_015703.1\|WP_013930702.1\|5958317_5959130_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.47725e-23
NC_015703.1\|WP_013930705.1\|5963515_5964244_-\|phenylalanine-4-monooxygenase	gnl\|CDD\|237020	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.	5.21029e-108
NC_015703.1\|WP_013930697.1\|5938387_5939635_-\|DUF11-domain-containing-protein	gnl\|CDD\|307488	pfam01345, DUF11, Domain of unknown function DUF11. A domain of unknown function found in multiple copies in several archaebacterial proteins. Conserved N-terminal lysine and C-terminal asparagine with central asp/glu suggests that many of these domain may contain an isopeptide bond.	3.84919e-10
NC_015703.1\|WP_041341678.1\|5961205_5963143_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.22463e-23
NC_015703.1\|WP_013930711.1\|5975102_5975966_+\|alpha-1,2-fucosyltransferase	gnl\|CDD\|211387	cd11301, Fut1_Fut2_like, Alpha-1,2-fucosyltransferase. Alpha-1,2-fucosyltransferases (Fut1, Fut2) catalyze the transfer of alpha-L-fucose to the terminal beta-D-galactose residue of glycoconjugates via an alpha-1,2-linkage, generating carbohydrate structures that exhibit H-antigenicity for blood-group carbohydrates. These structures also act as ligands for morphogenesis, the adhesion of microbes, and metastasizing cancer cells. Fut1 is responsible for producing the H antigen on red blood cells. Fut2 is expressed in epithelia of secretory tissues, and individuals termed "secretors" have at least one functional copy of the gene; they secrete H antigen which is further processed into A and/or B antigens depending on the ABO genotype. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes.	4.77616e-77
NC_015703.1\|WP_169704900.1\|5969684_5970848_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.78839e-41
NC_015703.1\|WP_081469306.1\|5979076_5979943_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.1982e-11
NC_015703.1\|WP_013930706.1\|5964334_5965468_-\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|273528	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see . In some bacterial species, this enzyme has been studied as a hemolysin. [Energy metabolism, Amino acids and amines].	5.4084e-159

>NC_015703.1|WP_041341682.1|5965779_5967750_-|acetoacetate--CoA-ligase
MLDRAPVKPLWTPSRSFMEQSNLKKFQNWLFVKKGLYFKNYHDLWDWSVTDTDDFWESVWQFCEVKSHSMYFEVLIRQNRDFIGTQWFRGATVNYAEHIFRHKSPARPAILFRSEGDPLRELSWRELEKQVGAVAAYLRHSGVGAGDRVVGVLPNGPQAVVAFLATNSIGAVWSSCSPDFGTSGILERFQQIEPKVLIVADGYTYNGKPFDKLPAMRQLIGQLPTLKRTVLVPYLHSDAQLPKTDNWKDVVKTPFSSLEFTPVPFDHPLWVVYSSGTTGKPKAITHSVGGCLLEHLKALTIHQNVKPGDRYFWYSTTGWMMWNFSVASMLAGATLVLYEGAVQYPNMNVLWDLAEKAKITHFGGGAAFYLACMKAEVSLQGYKFNQLQSVGSTGSPLPPEAFEWIYKHVKKDVWLISLSGGTDICSAFVGGCPSLPVYSGEIQCRLLGCKLEAYDEAGHSVRNELGEMVITQPMPSMPVYFWNDKENRSYRASYFEHYTGVWRHGDWIKINERESVIIYGRSDATLNRDGVRIGTGEIYSAVESIEEVSDSLVVCLEQSGGKYFMPLFVVPAQGHELTDDLKKKINTQLRTQYSPRHVPDAIYELPEVPYTISGKKMEAPVKKILMGIDPAKAASRDTMRNPKALDFFVQFTQVKV
>NC_015703.1|WP_013930706.1|5964334_5965468_-|4-hydroxyphenylpyruvate-dioxygenase
METLMADFDTLQTETVDFLPLNGTDYIELYVGNARQAAHYFRTAFGFQPLAYAGLETGRRDRESYVVVQDKIRLVLTSPLMGGTDIGQHIDRHGDGVKVVALWVDDAAYSFEQTVRRGAAPYFEPVVEEDAFGKVVRSGIHTYGDTVHVFVERNAYNGVFLPGFLPWNPVYQPSSTGLKFVDHMVGNVGWNEMSLWVNFYANVMGFSQLVSFDDKDISTDYTALMSKVMSKGNGRIKFPINEPAEGKKKSQVEEYLDFYGGAGIQHIAVATEDIIHTVTELNRRGVEFLQVPVTYYDDLIDRVGQIDEDLDPLRDLGILVDRDEEGYLLQIFTKPIMPRPTLFFEIIQRKGAKSFGKGNFKALFEAIEREQELRGTL
>NC_015703.1|WP_013930705.1|5963515_5964244_-|phenylalanine-4-monooxygenase
MNQSYHKYTAADHVMWRRLFERQMAQLPPIASRAYLEGMEKVGFGADHIPDFEAETNPRLRALTGWSVEVVPGLIPQRDFFELMARRRFPASTWLRAPEQLDYLEEPDMFHDTFGHVPLLTNQAFCDFMSDLSRVALRFIDQPEAIVQIGRLYWYTVEFGLIREEGQTKIYGGGILSSAGESAYCLSDAVPKFPFDVRTVLNTFYHIDRYQDRYFVIDSYEQLYRSVPDIEEILAETHLISG
>NC_015703.1|WP_041341678.1|5961205_5963143_+|HAMP-domain-containing-histidine-kinase
MLHPFNSFASTPQERQLRAAKHDSTRLRLYTELARKYLLENKFDSSLRYIKSGLQLATKLNITRYHCKLYTLWCFMARLEKQYDTAIKTGKLAIDFGKKNKQHIDVEYISYILAAVYNSKAYITGSKQEHVTAIRQIFENIRFSNQHQSFTHSQNNYYLLSSIYKDNGNDSLAYLYLAKGLKYSMNAKTPHERMILLSNYVELKLYQKRSDEAQTFLTQLLDFTPPKEDTEVYLYALSGATKACIKFGEFDTAFSIIQKIQQNAPLMKAMDNERKMLFNTERATIFLHQKNYQAAQQAQRQAMICATKEQPAFGDRLSLMINQQKLFEYQNRFQKALDLQKRIHAMQDSLTSEQFNFELAASEERLAHENKERLFHQQLKIQQLQNQRNAQQLKQSQYILRATLLILTLLSVVVIIIVLQMKKIKKQSAALKELNTNKDRLFGIIGHDLRSPVIFLQMSLSDVFRKIPEKYTELSGIVSEQIARTNSLLSTLDNLLYWSVTQRDKISVFPRAAPLSDFVEEALDWLQQSQLKAEVTVYADIDPALSIIVDDNHILVILRNLIHNAFKFTPKGGEVRLSASAAEDHAELFIRDTGPGFAGVVENTQKRGTQLGLKLVRELMQANHGTMQIESSSKGTLVKLSFPKA
>NC_015703.1|WP_081469304.1|5959132_5961106_+|HAMP-domain-containing-histidine-kinase
MHRLYLISAIVSTIAVLKAHTIAPLQSQLRAARHDSTRLRLYTELARGYLLTLKLDSSAIYMDLGIKLSKQLNTSSEYSSLYSTQAHLFRYKKQYTQGIKAAQMALDFGKKNQQPANVERAGYALAIIYANRAFDTGNPQDKIRSIRQLFENIFYSNQHQSFTQIDRAYNLLYSLYKENGNDSLAYLYLEKQLMYTTPPKSPNLQLLYQGINTELHLYHKRNAEAEASLQQLFNIIPKKEDTEVYLYCLSEITNVCLKRGQPDRAFSIIRKIENSPSLLREMNNERRMIFNIERTAVYLYKKNYSAALRAHQQALVFAKKEKSTFGDRLKLLINQQKLFEYQQRFKEALSLNKRIHAMQDSLTSEQFSFELAVSEERLATEAKERIFKQQLKIQQLENQRKSQSLNQAQYILWATLLILVLLSVVVIIVTLQMKKIKKQSAALKELNTNKDRLFGIIGHDLRSPVIFLQMSLSDVFRKIPEKYTELSGIVSEQIARTNSLLSTLDNLLYWSVTQRDKISVFPRAAPLSDFVEEALDWLQQSQLKAEVTVYADIDPALSIIVDDNHMRIILRNLIHNAFKFTPKGGEVRLSASAAEDHAELFIRDTGPGFAGVVENTQKRGTQLGLKLVRELMQANHGTMQIESSSKGTLVKLSFPKA
>NC_015703.1|WP_013930702.1|5958317_5959130_+|response-regulator-transcription-factor
MLYIRLQTYEYSSGIKIAQSSKILHKLDSETLAKEKKYTQMNLSVLIIDDDPRHSAQLIEYLKRLPYLVKTKVIHQPTESLKELIDNTYDLLFLDIEMPDLNGLELLQTFTMPPTIVVSAHPSYAIDCFDLDTVVDFIEKPVSFNRIMRALKRALTKVKVSVNNHLYLKAGRQMQHFYTDSIHYIEADGIYSKVWSKKGDFVLVNDNISEVEKKLCHTRLVRLHKSYIFNLNHITAFDSRNLWLGEKKFQVGVSYRGRLTELLELEGTIE
>NC_015703.1|WP_013930700.1|5956056_5956794_-|hypothetical-protein
MTTKQHILSFLFILLTLTAVDIKIFAQVKVGSNPTTIGTASNLEIEAANGNKTIINKTTGQMTVQDGTQGAGKVFTSDAAGGASWVAPTAPAAANTFPFAAVLSNTRQQFATSASGNTQFELKSDGESFDPTNSYVPTTGRFTATTAGYYLFSGAAQFDNTAMAGTPGFTAVVMTLRKNFGLASVATLAQYAANPGGSTINSGSLSTIVYLNAGDYVSLTTGAQVNSGSIYQVISLSFYGYKFAN
>NC_015703.1|WP_013930699.1|5949350_5955887_-|hypothetical-protein
MNINYTLTTLRRHWVMWSFMLVLAGMSTRPEVYAQTGNYVFSGAEAVNYGVVDLATPGGQTWATDRAATPGYFSAYGTASYTGAGDAANINGYVKHYATAANQSFTFPVGSGTDYRALSVSGTRTASSVIGVAWIAGNPSTTVDPTAPNAGTHAITALGSGITAVSPAGMWDWQDVSNNAAGLTVTVSIPAMTGFAASASELRLVGWDGTKWISLGTSGATGLAENSTLSGTMQSGITALAIGLSSLPADFDGDNVPDATDLDDDNDGILDIYEDCTASIIADEFQGTFGNTTACRPSTAPVSNYSYSCPSNTAGDYQILSGSLSANSANAFFRQFNGHTTGTTTDAYLFANGSTQVGIFYTGFFTVTTAASYKYGGWVINAVKSGSNIALPNLGFRIVNAATGAAVSTATTGNLPEGGAWQQAEGTVLLTPGTYRLEAYNLSTAATGNDFGLDDVYVTPVTCNNDLDGDGIPNRLDLDSDGDGCPDATEGGAKLASANLVNSTLAGGNSGTAYTGTSTTPVTRNLGNTVGNTPSTLGVPTIAGTGQDKGYSQDAGVRACIDTDGDGIPDDIDLDDDNDGVPDTVEGTGDCDGDGISNSLDLDSDNDGITDVAENNGLDANCDGRLDGVINSQGMPGAVLRGGMVSNVSRLISYSAVANLLTDTQASTVNSTWPVNSDIGWFSYNGSLYRIVSGTTLIEYKNYTDLVNNVQASNVSTAGNYGGFTGFFVQGTAIYAVAPTFMLGYAGLADLIANKPFTTIPVSTNTTANTYDFFDTNNRIYRVTAVPYTLVSYRSLTDFALDIRESQNALGYAEGANGAYTVFGTLRALDTDSDGIPNTCDLDSDGDGCFDAIEGGAAFTKTNTDANGRLTGAVSTGTGIPTLAGACGQTIGTSQNIAQQDAACPDSDGDGVPDATDLDDDNDGILDTAENYPNCTSLYNWVSWTSITSTSATGTLRYNGQSVTVTVSKPNGGLTNNGSIFGVANFPTQYGIPTSGPALGNSTAGPITVSFSAPLNVPLFAFASLGANVINTPVTVNLSPAYTVEWNGQATAYNSTTQLTGMEGYGIVSFPATSTLTLNFLQNENRTDFNFGIKDVPTCLTPADTDGDGIPNSLDLDSDADGCPDAIEGGALFTTANLVNSTMAGGSTNVTRNLGTNVSSATATLGVPIIAGTGQSIGISQMSAVNGCTDTDGDAIPDTDDLDDDNDGILDTAECRSYSVYTFNRTDVNAGTSVPFTVTGSGLTSTIINQKTTPYTDLTFNSVGWKLLANGVQPAPNGTITVTLDATNATGTFVFADAVLITDGTTYTIIDNDAVSGTGGFSFVGPWVHQTFAGSYLNDNTYVGAPYAGRTATWTFTGLSPIVCDTDGDGITNSLDLDSDGDGCPDAVEGGANFTTANLVSSTLAGGSTNESRNLGTTVGTTTTTLGVPTIAGTGQTIGTSQNATAQDFACIVQPPFSCTAETAYLFQNPTVTNAYSVNLSTAATTLITTTLVSGTTNRELNALGYNQTDNFIWGYRLNTNQVVRIGSDFSTQPVSISGLPGNIVFNVGDVSSTGVLYLYAQNTTTIYRVDVNPTSPTYLTLLSPNLTTQTMNIADWAFSPIDGNLYTLSATFQLNRINPATGGVTPVGTVSGAGIQTITNPQFGAIYMDNTGAMYAQENSTGRIFKIASPHSNSLTATLVGTGPTSTQNDGARCPQAPVSPCPTVVPALSPTTVKNLCPATTVDLSAVTANNIPGGSVLTWHTGTPATTANKLSSITGLSAGTYYAAFYNATNDCYSATGSVTATIETCCPTITNTAGNNVNPTSCGTATGSIRICGLPANGTGYTINYDKNGTPATALTNQTADASGCITITGLTAGSYTNIKVSSTACPIGSNAVSATLTDPTPPSAPTGLTGVPSSVCIGTSVALSATGTAGATYTWTVTPVGATLGSAAGTVSGTTASNTLTGTSSGTYTVSVTQTLAGCTSAAATTTITINATPSTPFPTANIKSNVCPLAVVDLTSLQPGALSGITYEWHTAASNPTAATLVANPNAVAAGTYYLYRKSTGGCYSAASSAVTATVTNCCPNPSVGGTITLVGTLPLCSTSNQGVLSLTGQTGTVVKWQTSTNGGVLWTDIAGTAGLTQYSFTNAQNNQQFRAVVNNSGSCVDANSVAFTTTTSSSACSVDCEVKPGGIGKN
>NC_015703.1|WP_013930698.1|5939711_5949146_-|tandem-95-repeat-protein
MDKRLLFNLISILNMGNVCRLLTGSWRALLRWGEFACRLLLQPVRSLTGPDTPPNDEWLIMGKLLRYLRRCVRLENTGFRLARPFYGDRGYSRGSPTGLSARPMLLFGSLLLLLTLSLNTTTYAQTTVDSDGDGIANATDLDDDNDGIPDTVEDNVNCASLYNWVNWSNITATSATGTLSYNGKSVTVTVSKPNGGLYSTSAMDAASTFPLTYRVPRYAQALAVSTAGLITVNFSAPIDIPLWAFSSLGSGLPTISVSVVTSPAYAVEWNGQATVFNSTTQLTGTEGYGILSFPTSSSLSLNYAIDENRCTISFGVKDAVTCSTPADTDGDGLINSLDLDSDGDGCPDALESGGAFAPANLVNSTMAGGNSGAGYTGTSNTPVTQNLGNNVSNSAATLGVPTIAGVGQTIGLSLAPAINGCTDSDNDGVLDTDDLDDDNDGILDAVECPPTNFVTNGDFPTDLTGWTTNSGAAGAWTPTNGYVQASGLNVNNVYLSQTITGLNSATATKQLDLFLDVATLDGNGTGSTSRVEVWVNGEQYAAFNNLSTAVMTATAFSGASISNFSSGSTNGTFVRNVKISIPWLVNTTSATLDIRYFSSGSNSDVFRLDNIYIARTEQCDIDGDGIANALDLDSDADGCPDAIEGGAAFITANLVSSTMAGGSTNVTKNLGTTVGSTTATLGVPTIAGTGQAIGVSQASSVNGCKDSDNDGVLDTDDLDEDNDGILDTVECPPTNSVTNGDFPTDLTGWTTNSGPAGAWTVTGGYVQATGLNVNNVYIRQTVSGLNLTNATGMLDLFLDVATLDAAGGSGRTSRVEVWVNGEQYATFDNPPTATQMTAVALAGASINNFSSVSTNGTFARNVNISIPWVGKPSSATLEFRYYSSGSGSDIFRLDNIYIAQTGQCDLDGDGIANTLDLDSDGDGCSDAIEGGANFTLTDLVSSTMAGGSTNVTKNLGTSVGSTSLTMGVPTIAGTGQAIGTSQNTGQKDLLCDVIDSDGDGLVDLYDLDDDNDGIVDALESASCYYTASEWNTQVKPASVIISSPMATALSNFAALDDNNATTGAVQFVTGPAQAQAGATLFNLDFGNPVQLDALYLKKTSATQVFGGTVMLQGSVNGTAWVNLLSTAVNPADATNVTGNGAVSLTNSNKLTVNLNAGAYRYYRIQGVGTANLLGGIISEFYYDVNTTAYLASYFPKTGCTGSDLDNDGIANYLDLDSDGDGCPDAIEGGAAFTTANITAAGALTGTISSAAATSGIPTQAGTGQTIGTSQNAAAQDAACPVCLATTAPSLSATTKANACPSPTVDLSSITAGTPPSGTTLTWHSGTPATTANKLSSVTALAAGTYYAAFFDAANNCYGATTTVTATVTVCCANPSVGGTASYAGGTLCSASNAGTVTLTGQTGTVVKWQTSTNGGSTWTDIAGTFGKATYNFVNAANGQQYRAVLNNGGACSDAFSTPAIISTSSTVCSSATCDKIAGTVTYSITPATTGSNYSHVIIMTDASGVIQFASASGSNSLSNVTAGNYLVYLVSYDNTQLPLPVLSVGTTLSAVGGACVAYSPQLPIKVCPPTTLNCANSTLTGAFSAGTPSAGTLTLTLADVQAGAYSFLVSGGGFTTTPAPFIATLTTGQTSVSIPVQYDGSGTSGPRTVTVSSPQITNSCQLTATVGPGTPCTPITPGVAAGTAASIQTGQTASFTLSGFAPSTAAVTWTIVPSAGVSKPTGTGPSTGTVTFAVAGSYSIIYNITNSSVPAGCTESSNAFATTVLQVVAPPINCTTPSPGIASVVPSTAAVPVNGTATVQLQGGTPNTLIQWMVIPSTGVSPAAGTGNTTGTLTFTAAGLYQVVFSIYNEGDGTCRPVQNSASALIAVGLNPCFPPTPITVIPSTTKSVSGQSVTFTANGGIPGVMTWAITPAAGVTPATGTGSVATVVFSAPGDYNITFTSTNTSSPAGCTAPSTISSSVLHTVINQKPIATDDIAVTPSGKPVSGNVLTNDKDPEGGPLTVSTTPTTPPTKGTVVLNPDGSYTYTPTPGATGTDKFCYRVCDTGGQCDTACVTVNILPSVTPDPNVNDKPIANDDNTQTYQGAPVTVTVKANDLDPDGNATLGTPSAVTPPSNGSVVYNADGTVTYTPTAGFTGKDSFTYRICDTGTPQLCDTATVSVEVLPTPPAGNKPPVAVDDANLTPKNTTVAGTVAANDSDPDAGQTLSYSPIGSVAGLTLNANGTYSYTPTTNFVGTISQKYRVCDNGTPSLCDTATLVIAVTDPIVTNPPVVVVPPIVTEPGKPVTVCGDINDPETGDTHTVTVCGAPAKGSIGTPTVNNTTNKVCMTFTPTAGQTGTDQVCLIVCDQTGKCDTVNVPIIITPVITPSVTPKPPVVVVTPIVTPQDSTTKTCMPILDQNGTSTTNTFTICGAPKNGTASPVTSTGGQLCITYKPNAGFTGRDSLCVIVCDANNLCDTINVPINVYPKVVPGTQQPPVVVLPPIVTEPGTPITICGPVNDPNVSDTHTVTLCNTPSKGTVSGLSVNNTTHQLCMTYTPKSGQTGNDKVCTTVCDQTGKCTTVEVPVTIVPGNEKPIATDDIAVTPSGKPVSGNVLTNDKDPEGGPLTVSTTPTTPPTKGTVVLNPDGSYTYTPTPGATGTDKFCYRVCDTGGQCDTACVTVNILPSVTPDPNVNDKPIANDDNTQTYQGAPVTVTVKANDLDPDGNATLGTPSAVTPPSNGSVVYNADGTVTYTPTAGFTGKDSFTYRICDTGTPQLCDTATVSVEVLPTPPAGNKPPVAVDDANLTPKNTTVAGTVAANDSDPDAGQTLSYSPIGSVAGLTLNANGTYSYTPTTGFVGTISQKYRVCDNGTPSLCDTATLVIAVTDPIIEKVCLLPQAYLQGALFGVLLPDVLMRDDLRTKGLIPVTSPYPGMGMSGITNANTTTLAVVGPTSPSGQNAIVDWVFVELRSGADSTLVVDSRSALIQRDGDIVDVDGVSSVKFSQANAGTYYVVVKHRNHLGVMSRKTALSGTCSVIDFRKAATPTFTFSSAAINQSQVVVEQGRALWAGNALYTNTLDGKHEVIYQGTDNDVNVIYQQVINSVNNIFVSPSYKLKGYFNGDINMNGEVIFQGTTNDVEFIYQNVIKNHPGNTLVQPFFKIKEQIP
>NC_015703.1|WP_013930697.1|5938387_5939635_-|DUF11-domain-containing-protein
MSQKVRISMIGMVWVLMGFLKAAYAQLSTNTVKYKITYTAATQTYTAWVVPDYSVPNANNSTTVEKGGTAQYTIVVPKDFVITEITDIKGTWTKPTDSGFIKLGPGNSGQTWTGLDPSLNYYVIGKTPSETDYGTFTAGTAVALFSFKGNGCFGPIKPLPAGDPFIQAADANYSLNVANSFYSRSGQPAGGNVNPLEQFINITGSAALCSGGSSDLSITKTLTGAKVRTLNETVTYRLVVRNQGPDAATNIVVKDSVSAGLVIKSATAGTGTFTSPLWNIPTLASGDSAVLTVTTQIVAEGVNYNYGIIKSQDQTDPNKNNNDIPACVSVPYKLCAGNKLQASVPAAYTNVVWFKGTTQVGTGNTILLSEPGSYTFTATNVTCPVGGCCPIVIEASADCCPVSLCVPVVLKKIKA
>NC_015703.1|WP_169704900.1|5969684_5970848_+|glycosyltransferase-family-4-protein
MAVKILIAAFGFYPETHGIAQAAYHQAMGLHRLDYEITVVTQASDQPRNVPFAVVSFPVRYRRFSLLPQRKVITAYQRFILESDADVFFFHGWETWVSEWVIPILPQLKGKTVLISHGTTIHLRYPGFKGWLRWLLNRSAALGFSGKLRMFDWLVFLSPHPDPQRMSDVVEAKRLGITDFSIIPNGANPAFLRSSVVDFRTKFGIPNATILLCVGNFMREKGQRELVRWFRELALKNTVLVLIGSRFNEYSAQLSKAAGTHLNVTVFLFEQLTVEDIHAAYSAATIFVSATYTEVQPLVLLDAMAVGVPFLCREVGAVKELKGGLCFRTKREFSKKLRWLLRHPLSRSSLGEKGRKSVQEKYNWDKSALLWHALIQRLIQGIRRCSQ
>NC_015703.1|WP_013930708.1|5970892_5972266_-|hypothetical-protein
MKRVSTKILFVFGLLAFSACKEEIALPDNVASFAIAQQGLDAEEATIRIALSRATDVAIPITVQLTPSLVTYDKEFVTEPSAVNNVVTATVPVGKSEVLIKVKKKANVFLNGDESLAMKITSVGSPVLMGLTTETTLSFAAITSTGSKLTMEGKTAESNYANNVYIDLSANAATLSARKSWNLGFYHGGQYRVILNPGYQSSATATAKTDITAVTLADTATVPDLNFAPGGEGTLALADYWDGDLSKTVFAEVSATDAQNKVYLVSFEGSKTKDKWFKVKVNRNGEGYKVQFARIGETSIKTVDIAKDADFNFSFLSLETGLTVSAEPRKMNWDIQWGYSTSNAGTNPPTPYWFQDFILLNYAAGAEAAEVLVSTVTYEAYAEANIASSTFLKTRDAIGSKWRVTSGAAVGVRKDRFYVIKDPSGNVYKLKFVSMGLAGDGGERGKPVIEYALVKKK
>NC_015703.1|WP_013930709.1|5972300_5974574_-|TonB-dependent-receptor
MKKNLRNLFFLLFAGAGVFGQNGKIEGVVKVNSGALSGASVRLKNTDYGQITGQDGSFGLDVPKGNYTLTVHFIGYQLLEKSIDIGVGELLKLGDLSLLEQAANLEEVVVTGQFEAQSVRNSVYQVRTITNQQIQLRGATSVQSVLNTELGMRFSNDLTLGTTDVQLMGMSGQNVKVLLDGVPLVDRGSTRESIGQIDINIIDRIEIVEGPMSVTYGSDALAGVINIITKKGESNALWTLTARMQEETAGAEYQLLNGKGTHNEYVGVAWQKKGWQVSGNFTRNFFGGWQGSLTGRKKEWMPKEQYLATGGITYRTDKWNVWYRFNGTYENLKNLGNTYVSTQTGNLAATDLFYKTERAFHQFQSDYRWNPQNSFTAVASYTDYRRATQTTDIDLVRDRRTLSLTGSQDKSIFQTTFGRFTGQHKLSSMVSLQHGLELNFNRSSGERILGTPSINESAYFASAELKITPKINLRPGVRFIKNSIYDAPPLIPSINTKFVLAKRLDLRMAYARGFRSPALRELYFTFFDSNHSIKGNTNLKAENSNSFNAFLSWQAIEKKALRVNTTLGGFYNYFNNLISIGVDPTNPQVSTYLNVDVYKTRGLTLNNTFFWGNLQGNVGFSHIGRYNRLSSTESLPVFVWSNEVTTNLRYTLPKIAATLSFFYKYTGKQPSYQVVATENGPQARLAETAGFHTADLTLTKVFYRNYTIVGGIKNLFNVTNRMNSAINPGAAHSSSGAVPMSYGRSFSLGLMAQLTKR
>NC_015703.1|WP_169704902.1|5974778_5974919_-|hypothetical-protein
MELIYAVIAAIGVMVASFPCQTGSINTIAPQLKEFDKEDLWVSSFV
>NC_015703.1|WP_013930711.1|5975102_5975966_+|alpha-1,2-fucosyltransferase
MIIVKLSGGLGNQLFQYAFGRHLATVNQKELKLDTSALTKTSDWTNRSYALDAFNIRAQEATPEEIKALAGKPNRLLQRVGRKVGITPIQYFQEPHFHFYSSALSIKSSHYLEGYWQSEKYFEAITPILREEFAFTISPSTHAQTIKEKISNGTSVSIHLRRGDYVKTSKANRYLRPLTMDYYQKAIDYINQRVKNPNFFLFSDDIKWAKSQVTFPPTTHFSTGTSAHEDLWLMTHCRHHIIANSTFSWWGAWLNQQPDKIVIAPQKWFSTERFDTKDLLPEPWIQL
>NC_015703.1|WP_013930712.1|5975970_5976828_-|cytochrome-c
MRTAFLVLGLGISIVGCTNSQTSDNQSSVVDSTAVDSATVSAPKKDSLSVYLPDIKASLPEAQTVEVKDDPVFSKIKSYKAVSLVTVLDQFLPAYKSLNIKETQIVFECEDGYNPSMSLEKVLSKKAFIAISDVDAPKGEEWVNPKKGDHEMKIAPFYVIYTDVPAQDVSFKWPYNLVKISLSAASKELAVLFPKEDDTQVKGFELFKVNCLTCHSLNKVGGKMGPELNYPKSVTEYWQVDQIKQFVKAPASFRNECKMPAVTHLTDKELDEIVNYLKYMAKHKV
>NC_015703.1|WP_013930713.1|5976967_5977699_-|NIPSNAP-family-protein
MFKQLLSVMLLFAAALTASAQDTRCYETRIYYTHPGRLDALLTRFRDHTTKIFEKHGMTNVGYWVPLHEENKLIYVLSYPDRAARDASWKAFVSDPEWKKVQSDSEVSGKIVAKVESIFMDATDFSPKIKSSKSKKDRVFELRTYTANAGKLPDLLSRFRDHTLKLFKKHGMTNVAYWTVTGKDDTLIYILAHPSEEDGKKAFDAFRVDPVWVKARDESEKNGKLAAKVESVYMKATDFSTIK
>NC_015703.1|WP_013930714.1|5977750_5978605_+|glycerophosphodiester-phosphodiesterase-family-protein
MFKKISFLSVIFIAVLSGCAPKTYLRNVKRELFTYSAQSTPLISAHRGGGDYAGYPENCIESFDWLAKQMPVIIECDISMTQDSILMMMHDDALERTTTGTGKVREVTWAYCQSLRLEDNKGTLTAYKIPTLAQVLKWGKDKVMFTLDVKRSVPFEKVIELVKQNQAQNYAAIITYNAQDAAKVHRLDPEVMISVTIRNNEEYQRHHDLGIPDNRMIAFVGTREPNAELCRFLHEKGIRCILGTLGNLDKMAAARGDKLYQEFVKQGADIMSSDRPLEAWKVIK
>NC_015703.1|WP_081469305.1|5978623_5979028_+|DUF4174-domain-containing-protein
MNALSILICTVLMGFQQNLEQKLEAMQWKSRVVMVYCPKVSDAEFKLQKKWLGEVGKDIMERDLTVIDCIETNLSAEDALHLKERFQYTPNHFCFWLIGKDGEIKLISNKPVKPEQLFGLIDSMPMRREEMKKN
>NC_015703.1|WP_081469306.1|5979076_5979943_-|CPBP-family-intramembrane-metalloprotease
MQKWIKILIWGIQIYLCHVFSTGLSYFPVTLLGERSSLLMLFVRFLLTIALLILLHKFWLSSSWKTTFSWQFYRIKPQFFIRYLGLGVAFVFIFHIWMWVFAPNKQIEWNNKLPLSLYGYLILQTFCRGLMGSITEEVLYRGYFQTQILKTTNSSVLAILIPALLFGLTHWSAGENPWYSSLYVLNTSIKGIVYGVIAYKTGSFWYSAAVHYGWNMVLMSDLIAVDCNVENPHYFLRTYLDCNNMLDVHYYNNTWSLGLTIFYCLLVAWSVFYYYKKNDANTQPQYAE

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Crispr_ID: NC_015703_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015703_13

6532320-6532435

Orphan

Consensus_repeat	Method
CAGTATACCTTTTGCAGTTTAAAATTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015703_13

>merge|NC_015703|13|6532320-6532435|CRISPRCasFinder
CAGTATACCTTTTGCAGTTTAAAATTTTGCGGTTTTTCATTTTTCGGTTGTTCCCCTCAATTCCCGGCATCTCAGCATTCGCTTTTCTCAGTATACCTTTTGCAGTTTAAAATTTT

>NC_015703|13|13|6532320-6532435|CRISPRCasFinder
CAGTATACCTTTTGCAGTTTAAAATTTT	GCGGTTTTTCATTTTTCGGTTGTTCCCCTCAATTCCCGGCATCTCAGCATTCGCTTTTCT
CAGTATACCTTTTGCAGTTTAAAATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015703.1\|WP_013931188.1\|6543943_6546997_+\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|378929
NC_015703.1\|WP_013931186.1\|6539089_6540553_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NC_015703.1\|WP_013931174.1\|6525380_6526394_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381375
NC_015703.1\|WP_013931173.1\|6524866_6525223_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_015703.1\|WP_013931175.1\|6526461_6527643_+\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NC_015703.1\|WP_013931190.1\|6547814_6548909_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_015703.1\|WP_041341880.1\|6547056_6547791_-\|response-regulator	unknown	unknown	gnl\|CDD\|236956
NC_015703.1\|WP_013931182.1\|6533023_6536131_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_015703.1\|WP_169705212.1\|6519999_6522240_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NC_015703.1\|WP_013931187.1\|6540604_6543727_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NC_015703.1\|WP_013931183.1\|6536164_6537292_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_015703.1\|WP_013931180.1\|6531906_6532260_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NC_015703.1\|WP_041344012.1\|6522574_6523861_+\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|223504
NC_015703.1\|WP_013931178.1\|6529874_6530963_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|235103
NC_015703.1\|WP_013931185.1\|6538562_6539039_-\|DUF4843-domain-containing-protein	unknown	unknown	gnl\|CDD\|374383
NC_015703.1\|WP_041344016.1\|6532468_6532888_-\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|376496
NC_015703.1\|WP_013931176.1\|6527740_6528151_+\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
NC_015703.1\|WP_013931191.1\|6549113_6551543_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|379720
NC_015703.1\|WP_013931177.1\|6528259_6529825_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375554
NC_015703.1\|WP_013931172.1\|6523927_6524719_-\|NIPSNAP-family-protein	unknown	unknown	gnl\|CDD\|311781

Protein	Function_ID	Function_description	E-value
NC_015703.1\|WP_013931188.1\|6543943_6546997_+\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	2.25954e-26
NC_015703.1\|WP_013931186.1\|6539089_6540553_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	1.12486e-42
NC_015703.1\|WP_013931174.1\|6525380_6526394_+\|aldo/keto-reductase	gnl\|CDD\|381375	cd19149, AKR_AKR11B2, Escherichia coli NADH-specific methylglyoxal reductase (YdjG) and similar proteins. Escherichia coli YdjG is a founding member of aldo-keto reductase family 11 member B2 (AKR11B2). It catalyzes the NADH-dependent reduction of methylglyoxal (2-oxopropanal) in vitro. It may play some role in intestinal colonization.	3.14873e-157
NC_015703.1\|WP_013931173.1\|6524866_6525223_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.18502e-20
NC_015703.1\|WP_013931175.1\|6526461_6527643_+\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	3.63135e-177
NC_015703.1\|WP_013931190.1\|6547814_6548909_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	9.59452e-51
NC_015703.1\|WP_041341880.1\|6547056_6547791_-\|response-regulator	gnl\|CDD\|236956	PRK11697, PRK11697, two-component system response regulator BtsR.	2.61655e-54
NC_015703.1\|WP_013931182.1\|6533023_6536131_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_015703.1\|WP_169705212.1\|6519999_6522240_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	3.20769e-66
NC_015703.1\|WP_013931187.1\|6540604_6543727_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_015703.1\|WP_013931183.1\|6536164_6537292_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	7.46947e-82
NC_015703.1\|WP_013931180.1\|6531906_6532260_-\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	8.18403e-19
NC_015703.1\|WP_041344012.1\|6522574_6523861_+\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|223504	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion].	1.75193e-103
NC_015703.1\|WP_013931178.1\|6529874_6530963_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|235103	PRK03080, PRK03080, phosphoserine transaminase.	7.98628e-39
NC_015703.1\|WP_013931185.1\|6538562_6539039_-\|DUF4843-domain-containing-protein	gnl\|CDD\|374383	pfam16132, DUF4843, Domain of unknown function (DUF4843). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Bacteroides species. Distant homology analysis suggest distant relation between this family and other families of proteins with immunoglobulin-like folds, which are often involved in substrate binding. However, specific function of this family is unknown. There is distant homology to the Calx-beta family pfam03160.	1.16332e-06
NC_015703.1\|WP_041344016.1\|6532468_6532888_-\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|376496	pfam01220, DHquinase_II, Dehydroquinase class II.	2.32232e-87
NC_015703.1\|WP_013931176.1\|6527740_6528151_+\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	2.5457e-14
NC_015703.1\|WP_013931191.1\|6549113_6551543_+\|TonB-dependent-receptor	gnl\|CDD\|379720	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family. This family includes proteins annotated as TonB dependent receptors. But it is also likely to contain other membrane beta barrel proteins of other functions.	4.89755e-105
NC_015703.1\|WP_013931177.1\|6528259_6529825_+\|hypothetical-protein	gnl\|CDD\|375554	pfam18105, PGM1_C, PGM1 C-terminal domain. This is the C-terminal domain found in PGM1 present in Streptomyces cirratus. PGM1 is a gene product that links precursor peptides together to form the antibiotic Pheganomycin.	3.83243e-08
NC_015703.1\|WP_013931172.1\|6523927_6524719_-\|NIPSNAP-family-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	2.85822e-06

>NC_015703.1|WP_013931180.1|6531906_6532260_-|four-helix-bundle-protein
MSYRKFDLEERLIDFGVLIIEASERLPKTAAGKHLADQLLRSGTAPALVYGEAQAAESKKDFVHKMKIAHKELRETSINLRMLWKANMLTDELLLSEARQLVAIFQKSIDTAKGGET
>NC_015703.1|WP_013931178.1|6529874_6530963_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MITFYPGPSKVYPQVEGYLQEAFRSGILSMNHRSQGFMDVLRETLRLMHVKLNIPDDYTIYLVSSATEAWEIIAQSLTSHHSAHHYNGAFGKKWFSYASHIVPQTSGSLFPVEQTLTDHLFEHEKDTARAEFNRQRLREYEVLCLTHSETSNGTHIRMQELAQIRAMTDALIAIDATSSLGGVAFDWTLGDVWFASVQKCLGLPAGLGMMVCSPKVLEKARTVNDVLRYNSLLFMHENFEKFQTHYTPNTLGIYLLMRVLEQVSTIQEVGARSEERAKSWYEFLENETDWQPLVQNPATRSDTVIAVKGDPQAIIDVKKAALLAGITLGNGYGEWKNTTFRIANFPAIEQEEADVLKMFLRK
>NC_015703.1|WP_013931177.1|6528259_6529825_+|hypothetical-protein
MNDLPNLNAALSSFEWPPAGSPEELNRYEALQAGLAPLFEKTFPDVLAPKTVIVMPGTTLDEEMLGVLEGELHYEERMLSMLMLLRMPRTHVIYITSIPLDPVIVDYYLHLLPGITGWHARKRLTLLSCYDLSPKSLTQKVLDRPRLIERIKSHILPTHPAHLACYNVTPLERSLAVRLGIPIYGCDPSLLSLGTKSGSRAIFQKAGIPLPAGFEQVKNRQEIVEALTALKTAQPTLRKAVVKMNEGFGGEGNALFSFEGAPEDAHLAKWIEEQLPRRLKMAAPGLLYETFLRKFEEMQGIVEVFLDGDLKTSPSVQCRISPLGQVEIISTHDQVLGGDSGQLFIGACFPASAEYSREIGAMGHKIAEEMARRGVIGRFAIDFISVKEAEEWKHYAIEINLRKGGTTHPYLMLQFLTNGHYDADQGHFLTANGLRRYYFASDSLKSDAYRGTTPQDLLEIAIFHGLHFDGTTQEGVMFHMIGALSEFGKLGVVCIGSSAERALELYQTTVEVLDTELGASC
>NC_015703.1|WP_013931176.1|6527740_6528151_+|cytochrome-c
MKLLLIFCSGILFCSAVFPTQDDALAKSIERGKTIYTETCVTCHMGAGEGVPGAFPPLAKADYLVKTPEKAIEAIKFGLQGKIIVNGTAYEGMMPNPGLDNEEIADVMNYIQNSWGNTSNKKMVTAKMVEEVKQKK
>NC_015703.1|WP_013931175.1|6526461_6527643_+|PQQ-dependent-sugar-dehydrogenase
MTNKKPLLKRSLPIALTGLILTASVALMSNSGMTEDTRSAKKITEADLRVDTVARGLTMPWATAFLPNGDLLVTERVGKLRLVKNGVLDPKEITGLPEIMYKGQGGLLDVALHPDYASNGWIYISYSSPKAAGEEGDDGGANTALLRAKLKDHALTDIQYLFKAIPNVKANVHFGGRIVFDKKGYVFLSLGERGQKENSQNLSRDQGKVVRLHEDGKIPTDNPFVKTAGARPEIWTYGHRNPQGMTIHPTTGVIWEHEHGPQGGDELNIVERGKNYGWPVITFGIDYDNSIISKDTAKAGMEQPVVYWKPSIAPCGMTFITSNKFKEWNGDLIVGSLKFAYLQHLVIKGNKVVSREILFEKLGRVRDVRQGPDGNIYVVLESSGKIVRISPKA
>NC_015703.1|WP_013931174.1|6525380_6526394_+|aldo/keto-reductase
MQYRKIGNSQKIGQSGLDVSVITFGAWAAGGWMWGGTERSDAVKAIKESYEAGVTSIDTAPIYGQGLSEEIVGEAIKGIPRDKVQILTKFGMRWDLAKGDFAMHSKKNDGQAIDIYKYAGKESIVKECEDSLRRLGTDYIDLYQIHWPDKTTPIAETMEAVAQLIQQGKVRYAGVCNYNADQMREAAESIHLASNQVPYSMVKRGIEAETVPYCIEHGKAILAYSPLERGLLTGKMKPGHPFSADDHRAKLHFFKDENLKRVNAFLEKIKPLADDKGATLGQLVLRWTVEQPGITIALAGARDARQALQNAAAMDITLTPEEIIFINGHLNPLELVS
>NC_015703.1|WP_013931173.1|6524866_6525223_-|helix-turn-helix-transcriptional-regulator
MRKISSTNYHNQTFLEEKCALNELIHLLSKRWLTEVLFSIEEGNSRFSTLKEDLKYISDNILADRLKLLEQYKLIVRNSHLGEIPVRVEYSLTETGLRLSELLDGLCQFSEKEMEFPG
>NC_015703.1|WP_013931172.1|6523927_6524719_-|NIPSNAP-family-protein
MYKVFMPLLVLVSLLTFGVSAHAAKRDFYQIKIYHLKTEEQEKKVDAFLKDAYLPALHRIGIGKVGVFKPIINPETAKPTDEKLIYVFIPFRSQEDFFKLEQKLAKDNAYWNDGKAYLDAVFSEPPYDRIETILLNAFDKSPQFTLPALTAPHKERVYELRSYEGHTEKISKNKIKMFNDGDEVGLFKRLGFNAVFYAEVVAGSRMPNLMYLTTFENRASRDEHWKAFSADAYWKKLSAMPEYQKNVSKNDTRFLYPTDYSDI
>NC_015703.1|WP_041344012.1|6522574_6523861_+|acetyl-CoA-hydrolase/transferase-family-protein
MRPKISYVSPQEALSCVQSGHRVFVQGSAQTPSFLLKHLAQEAPRLQDVEVVSITVYGDVYVDKPEFQGHFHINSLFVSESIRKAVNEGRADYVPVFLSEIPELFNQNILPVDVALVHVSVPDPHGYCSLGVSVDIARSAVNNARYVVAQVNPNVPRTHGDGMIHASRFHAMVYCEDALHEANFGGTVSDSDRKIGQYVAELIDDGSTLQMGIGSIPNAVLQCLYTHKNLGVHTEMFSDGLVDLFDKDIINNKFKTIMPNKTVTGFALGTKRLYDYVNDNPAFSFMDIDFVNDPHIIKQNPKVVAINSAVEVDVTGQICSDSIGTLQYSGVGGQMDFMRGAALSQGGKPIIALPSRTQKGVSRIVPFLKQGAGVVTTRAHAHYIITEYGSAYLFGQNLRQRAKALINIAHPDDREQLEKQCFERFKTL
>NC_015703.1|WP_169705212.1|6519999_6522240_-|S9-family-peptidase
MRDPKWMGVAPSNPYWSEDGTKIFFSWNPEKNTGDSLYVYKPASKQTRKVTPLERSLLPTATGNYNRLFTQKLFVRDGDIFWTDVKTGQIRQLTNTVEIESNVTFSGDESKAVFRRGLNLFALHLMTGELVQLTNFLPGTKKAEAAANEQDKWLKKDQLALFDVLKERADKKKEGEKIAKSNQPKRPKEIYTNDAILDNIVLSPTADFITYRATKGGSGAKTAIVPNYVTESGYTEDLPARPKVGAAPNTSQLFVYNIKKDTVLEASTKDLTGINVKPDYLKDYKADTAKKATPRKVQFVSVRWSEDGKYLVVMMRSLDNKDRWIASLDPTTAKFKVLDHLRDEAWVGGPGSFWLDWVDNETVIFHSEATGYSHLYTVNVRTGERKALTSGKFEVQQAQLSKDKKTIYFQSNEVHPGEQHFYKMAVTGGERTKLTKMVGANDVTLSPDESKLLIRYSSATKPWELYVQDAQPGAAATQITQSLSPEFSSYAWKEPQIITVKASDGTDIYARLYVPKKKNGAAVVFVHGAGYLQNAHKWWSQYFREYMFHNLLVDLGYTVLDMDYRASAGYGRDVRTGIYRFMGGKDLDDNVDGAKYLVAKHGIDAKRIGIYGGSYGGFITLMAMFTKPGVFKAGAALRPVTDWAAYNHPYTANILNEPATDSLAYRRSSPIYHAAGLKDHLLICHGMVDVNVHIQDSYRLVQRLIELKKDNWEMASYPMEDHGFVEASSWTDEYKRILKLFQERLK
>NC_015703.1|WP_041344016.1|6532468_6532888_-|type-II-3-dehydroquinate-dehydratase
MKKILIINGPNLNLLGKREPTIYGSQTFEDYFQTLQSTFPEVELHYFQSNHEGALIDKIHEVGFLFDGIVLNAGAYTHTSVAIADALSAVTTPAVEVHISNVHAREAFRHHSYLSSRVKGVVVGLGLKGYELAVRYFVS
>NC_015703.1|WP_013931182.1|6533023_6536131_-|efflux-RND-transporter-permease-subunit
MASLSTTSIQRPVLAVVMSLIIIIFGLIGFSYLGVREYPSVDPPVINVSTNYTGANAEIIESQITEPLEESINGISGIKTLTSSSRDGRSNITVEFDLGVDLETAANDVRDRVSRSLGLLPRDIDPPIVSKADADSNPIFFLNVKSEKRSMLDLNDVVERQIKERLQTVSGVSSIQVWGEKRYSMRLWIDPLKLASYRLTAIDVLNALTRQNIELPSGTIEGASTELTVRTLGRLTTVEEFNNLIVKEEEDRVVKFRDVGRAELGPENERTLMRRDGIPMVGVAVVPQPGANQIAIVDEVYKRFEQIKKELPADIVPAIGFDYTRSVRRSIAEVEETIITAFILVALIIFIFLRDWRSTLIPLTAIPVSLVGTFFLMYIMGFSINVLTLLGIVLSIGLVVDDAIVVLENIYTKIEEGMSPWDAAITGSKEIYFAIISTTVTLAAVFLPIIFLQGVTGRLFREFGIVVAGSVIISAFVSLTLTPMLSSKLLKTRHKQPWLYRVTEPFFQWLNSAYESSLAGFMKVRWLAWVLMAGFIGVIYALFKYDAIPSELAPMEDRRGLRVSLTLQEGATFDFTDKYLQEFAKVVNDEVKPNEKDALITITAPGFSTNATNTGFVRVVLSEPELRQRSQMEIADAIQAKVRKISGAKSFVIQDPTIQTGQRGNNFPVSYVIQATSYEKLRGVIPELMKRVNESPMFVGTDVNLKFTKPEIRLEIDRDKAQNLGVSIQDIAQTLQLGLSGRRFGYFLMNGKQYQVIGQIDRVDRNDIMDLKSLFVKSNRGELIQLDNFVKLTEQSSPPQLFRFNRASAATVTAGLAKGVTLGQALDEMDKIAKSVLDDTYTTALDGQSREFKDSSSSLLFAFGLALVLIYLILAAQFESFIDPIIILLTVPLAVCGALLSLWDFSQTLNVFSQIGIITLVGLVTKNGILIVEFANQQKEAGLNKLEAVKAASAARFRPIIMTSLCAILGILPIALALGAGSESRVSMGISVVGGLLFSTILTLYIIPAIYSYLSLNEKKHSDKAAPEKLMAEEA
>NC_015703.1|WP_013931183.1|6536164_6537292_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MSKPIKSILTVLVILIITGLAFYPRLKEYTSKKEEPGASGGKGAGNGPAAPGGAKGGGPAPVNIMVIGNQRLEEKILSTGTIIANEEVDIRSEIAGRITSINFKEGDYVKKGTVLVRINDADLQAQLQKLQYQKKLAEVNEERQKKLLEKEAISQRDYDISLTNLNSMNADIENLSAQIAKTVIRAPFDGTIGLRYVSEGSYLSPGTVAKIATLTNVNPAKIDFSVPAKYAANVSKGTAITFTTEGGDEKFYGRVYAIEPKIDPNTRTLTLRATSPNNGRKLFPGSFARIEIILNTKSNGILVPTEAVIPGLKGHSVFLVKNNKAEPVEVQIGTRGDRTIEIYKGLHVGDTLITSGILQVKPGGPVDIKEAMVKQ
>NC_015703.1|WP_013931185.1|6538562_6539039_-|DUF4843-domain-containing-protein
MKKYILNAVFSAFLAIGLTACFENPAKIYDGPSVVEFDAAVTTAPAAGRTFPLVTVANGAGIIKTRINLVGPQRPNAETIKVVVDTQNSTAVAGTHYRLTSETVSIPANTSFGELEVEILSAPAQAGRTVTLVLMLEGNGTEIKASENFKRMGWTIRL
>NC_015703.1|WP_013931186.1|6539089_6540553_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKKIFNYIPAAIACFLTLESCDSALEVKPRLAVDLASAYNSPEALSAALNGVYDILQSTDLYGRDLVAIPEALADNGRATNKSGRLNAEFQNQVGAHFINWSNAYVAINRANIILKNLPASSAPQATKDAIEGQCLFLRGLLYFDLMRAYAYTPRAVVTAQNLGGVPLLLEGVTGLDQVTLPPRASIDDCYKQIAADLTKSIEKLTNTDTRFVRPFFASRAAAQALLSRVSLYAGNWADVVRLSTDALAGGVGVFQTTPTAYVSAWRAASHPESMFELSYQANENIGVNLSLQTTYTTLRTLGLRTATAGFGDLVPTNDLLSELGITRTGDVITRGNDARALLYELGTAGRGPAEVETTKFLGKSGQVNQDNVPVIRISEMFLNRAEANYELGNFAEALADVNRIRTRAGLTALESTVTGPALLTEILRQRRLEFAFEGHRFFDLKRRGLDLVKQPRSIAFTDFVILARIPTGQISLNPNLKQNFGY
>NC_015703.1|WP_013931187.1|6540604_6543727_-|TonB-dependent-receptor
MRKFLLTSICLLLTLCVQLRAQDRMVTGTVSGSDDGVPLPGVSVVIKGTSKGANTDSEGKYRISVPNGKSILIFSFVGFEKQEIAIGNRTEINLQMKSDANQLNEVVVTGYGGTLNKREITGSISKVKGQLIENMPVQSFDRALQGRAAGVQVQAANGIPGGSVQVRIRGVGSISGGNDPLYVVDGVQINSRGTSTITSSNPLNFLNPNDIESIEVLKDAAAASIYGSQAANGVVLVTTKRGKAGTTKFDFNYYNGVVEPLKKLNVLNTQQWIQMRSEALRNQTPTLTPAQALTNTLTSVRLAGDLTESAVAALPSYDWQNEAFKTGSANSYELSASGGNDKTTFYWSGSYLKQDANLINVDFLRGSTNLNVVHKISPKVTFENGIKLSTQKGRGQFGGPLGGSFLGASAFSSPLVLPMVPIYKEDGTFNGTPAEGGIPGILNQNIIMVSELNKIGGVQNQAVGNVSLTWKIADGLTFRPSASLDYRTIKGDNYTDARTPDGINVNGRLGFQYNQNVNFLGNAVLNYNKLLKENHNVSALLGYEYRSDVNEGYFGTVEGFPSPDFQYASSGTNFISTGGGWNGFRKQSVFAQAKYDFKNKYFVSATARYDGSSRFGSNNRYGLFPAVSAGWLISEEPFLKSSRVVTDLKLRGSYGVTGNDQIGFFPALGLVSGGANYNNLSGTAPIQMANPNLKWERNVTGEVGLEYGLWGGRVSGQVNYFSRVSNDLLLNRPLPITSGFGSIVDNVGQLRNRGLEFEITTVNVRTGKFKWETNFNFTYIQNKVTKLVDGILPQQNRDSLILLNAAVNTGLGNNTADITVGSNFIVGKPVYAIYTAKYAGVNPATGRPMWYDENGNITYTIRNPGDLKYIGSEFSPIFGGFTNTFSYAGFELSAFIQYEYGRTAVNSQGQFLMENGNRLFNTLTDIYERRWQKPGDITDVPRPINGGAELRGSGNTAGTRPVENASYVRLKQVSASYTIPANILKPLKFVRSARVYAQGINLLTWTAWTGYDPEFVGLGSGNNGVIPQARNYTFGVQIGF
>NC_015703.1|WP_013931188.1|6543943_6546997_+|PD-(D/E)XK-nuclease-family-protein
MLESFLGKTARYIFESKRPVNCIENLVIIVPTRRAAYFFKRALAQCSDRPFLAPEVLAFDDFVTQRCGVEMADNVSLLFELYDIFKEVDKNITFDRYLQWGSMLLRDFDLMDQYLVDSDYLFDYITEAKAMERWQADWPKNSISPDSERIKAYFELFSNLREVYERFRRHLHSKKRVYRGLAYRTLAENTFELLLNTDGAASHHSVEYKTENDGPDFYFVGLSALSAAQEKIIRTLIKAKRAEILWDTDQYYMRENPYIEGGKALRGYRDAAWAGQWKWTENQILQTPKDITVYAVPNASMQAKVAGELYRQWCADGQGGTENRPVAMVLTDENLLVPVLNGLDDSISDLNVTMGLTLRNSLLFTLIDSLFELQFTIAEFRSKDGRSIKMPKYNHRTVQKVLNHPFIRRYEFLALQHRDSTAPSIIQTTIREIQRRNFVYLDPNQLLEWGENHPLFTALFGRWDDNPHTVIKALYVLIDLLREVYKDTQNAIETEYLYLFYTLLKQLETTLNSSHAEKLNLRTFKAFMYELIRQTRIPFSGEPVSPLQIMGMLETQALDFERLIILSMNEGVFPASKRQNSLIPWDIAKEVGLPIYSDQDAVMSYHFYRLLQRAKDVHLVYVTDPSTYNGGEKSRFIRQLEHELVSMTEKNKTIRYKELMVMFKEKEEEDQVVELDPLTLDTLVDGQKVQITRQKAANTDWTVPKTPETLAFLMASLEKDGLYATHLNQYLKCSLQYYFNRIAGVSEDEDVEERIGSADFGSWIHKVLERIDKEFLMENKPITDDLVKAILREEFDKQFGGYDAESGINRLLYQVAEQTVVDFLREQRTRNDSLVVLATERKLSAEIRFPIGDKTILLKIAGKIDRIELVDNIIRVADYKTGKIEQLPKVTSDKLAGIMSSGSNANYEKIRQLWVYQYLIYKQMLADGGLRLRDREFHLTEYQVTSGFYSLRNIKRGFIENPLQFDQANDAESYVAHSEEYLRAFITERLLNADEPFRKTDHTQGCQYCDYKDICGR
>NC_015703.1|WP_041341880.1|6547056_6547791_-|response-regulator
MKKVIIIDDEAAGRTLIKQYLADFPEMIVLGEANNGVDAVQLIKEFRPDLIFLDIQMPGLTGFDVLTRLDEIPRVIFSTAYDQYALRAFEVHAVDYLLKPYTRARFAQAVGRVMGETPGQNVQKIQPLAESLMSAAAFPEKILVQTGNRLVTVNVADILWIDAEGDYSKLITLKGNHLSNYGISTLETRLNPKQFIRVHRGSIINIEFVKEIQKYPSSYDVILQNGDVVRVSRSYMDKIRELTF
>NC_015703.1|WP_013931190.1|6547814_6548909_-|sensor-histidine-kinase
MNRPFGQRTAFWGITYRELMWAGVFYLVSVLMYDVALSLSERSWAGGKSLIQVQLEYLPQILINYLFKILLTLPTWWLFFRKLAPRPLERKAWLHLAAAPLHVYLSLRGFYAVADAFGIGHLEGYGQVWDLYISLLFYILQFGIFHAYSYHQNLQRQQKLEAELRQAALQSELAALKAQINPHFLYNTFNTISASVPPELEHTRELLAELADMFRYQLRATKTDFVTVREEVDFAKKYLDLEKARFGDRLRVDIHVAPDAADAKIPPMILQPLVENSVKHGIASLIEGGEVRINVLQKNGALLFEISDTGVGMNHSLKGSSPAESEGIGLKNTQLRLEKMLGAQLRISQNQPRGTKIEFEIKQA
>NC_015703.1|WP_013931191.1|6549113_6551543_+|TonB-dependent-receptor
MKTRLSLLILLSFFGITQHTQSQNIKGQLLNTQQKPVAFATVALLNAGDSSLVKAGITNENGAFEFAQIKPGTYRVQAQSVGFSNLKSPSFTLETKDVLLPTLTLTEAAQTLNEVKITARKPLVEVLPDRMVFNVEGSINAAGNTALELLQKSPGVIVDQNDNIVLQGRNGVMVYIDGKPSPLSMKDLLTYLRSLPSEQIEAIEIITQPSAKYDAAGNAGIINIRLKKSADRKNFGTNGTVSLGAAQGMFFPKWTGALTLNHRTSRANWFGTYSNRTAKDWSYINMYREQAGMRYDQKSSTDSRSNAHNVKTGADFFLNKKNTLGFLLNGNLSDHTSVTNGYTPIGSIGQPISSVLMAENQSQNDRFTFNSNLNYRYADTLGHELNMDADYGRFRSDGTQFQPNRYTDAAEMRTLSERNYRMNTLTDITIFTLKSDYEQRLLGGKIAGGVKVSFVKTDNAFDFFDIIDTRDVLNTNRTNTFTYRENVNAAYVSYQRNIRKMQWQGGLRLEQTQSEGHLKSTVTQADANVKRRYLDLFPSAGLTYNYNPKNTFALNYSRRIDRPTYQDLNPFESKLDELSYAKGNAFLRPQYTHNVQLSHTYNYALSTSLSYSRTTDAVAQLTDTIEVNRNFISPENLASNDVISLNISYPFSPVKWWNVYFNAGLYHTRYRADLGTGRQIHLNATAYNFYAQNTFSLPKKFSLEVSGFYSSPSIWGGTYVSRPIGNLDLGLQKKLWSDRGSLKLTVSDVFFTQQWGGVSRFGGLKMIAGGGWESRQVRLNFSYNFGSSQIKTARQHRTGLEDEKGRIGE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015703_8	8.1\|3659851\|31\|NC_015703\|CRISPRCasFinder	3659851-3659881	31	NZ_CP019876	Komagataeibacter nataicola strain RZS01 plasmid pKNA01, complete sequence	51792-51822	6	0.806
NC_015703_8	8.1\|3659851\|31\|NC_015703\|CRISPRCasFinder	3659851-3659881	31	NZ_CP017589	Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ08, complete sequence	85540-85570	7	0.774
NC_015703_8	8.1\|3659851\|31\|NC_015703\|CRISPRCasFinder	3659851-3659881	31	MN693946	Marine virus AFVG_250M886, complete genome	8284-8314	8	0.742
NC_015703_11	11.81\|5777617\|36\|NC_015703\|PILER-CR	5777617-5777652	36	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	682706-682741	8	0.778
NC_015703_11	11.211\|5774038\|36\|NC_015703\|CRISPRCasFinder,CRT	5774038-5774073	36	MN694297	Marine virus AFVG_250M922, complete genome	30418-30453	8	0.778
NC_015703_11	11.265\|5777618\|35\|NC_015703\|CRISPRCasFinder,CRT	5777618-5777652	35	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	682707-682741	8	0.771
NC_015703_11	11.286\|5779006\|37\|NC_015703\|CRISPRCasFinder,CRT	5779006-5779042	37	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	687056-687092	8	0.784
NC_015703_11	11.286\|5779006\|37\|NC_015703\|CRISPRCasFinder,CRT	5779006-5779042	37	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	807786-807822	8	0.784
NC_015703_11	11.332\|5782047\|36\|NC_015703\|CRISPRCasFinder,CRT	5782047-5782082	36	MN694188	Marine virus AFVG_250M625, complete genome	5822-5857	8	0.778
NC_015703_8	8.1\|3659851\|31\|NC_015703\|CRISPRCasFinder	3659851-3659881	31	NZ_CP032413	Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence	93434-93464	9	0.71
NC_015703_8	8.1\|3659851\|31\|NC_015703\|CRISPRCasFinder	3659851-3659881	31	NZ_CP035190	Bacillus licheniformis strain SRCM103914 plasmid unnamed2, complete sequence	3831-3861	9	0.71
NC_015703_8	8.1\|3659851\|31\|NC_015703\|CRISPRCasFinder	3659851-3659881	31	NZ_CP020864	Paenibacillus sp. Cedars plasmid unnamed1, complete sequence	141395-141425	9	0.71
NC_015703_11	11.27\|5774037\|37\|NC_015703\|PILER-CR	5774037-5774073	37	MN694297	Marine virus AFVG_250M922, complete genome	30418-30454	9	0.757
NC_015703_11	11.102\|5779005\|38\|NC_015703\|PILER-CR	5779005-5779042	38	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	687055-687092	9	0.763
NC_015703_11	11.102\|5779005\|38\|NC_015703\|PILER-CR	5779005-5779042	38	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	807785-807822	9	0.763
NC_015703_11	11.148\|5782046\|37\|NC_015703\|PILER-CR	5782046-5782082	37	MN694188	Marine virus AFVG_250M625, complete genome	5821-5857	9	0.757
NC_015703_11	11.265\|5777618\|35\|NC_015703\|CRISPRCasFinder,CRT	5777618-5777652	35	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	192531-192565	9	0.743
NC_015703_11	11.286\|5779006\|37\|NC_015703\|CRISPRCasFinder,CRT	5779006-5779042	37	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	518241-518277	9	0.757
NC_015703_11	11.286\|5779006\|37\|NC_015703\|CRISPRCasFinder,CRT	5779006-5779042	37	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	232026-232062	9	0.757
NC_015703_11	11.81\|5777617\|36\|NC_015703\|PILER-CR	5777617-5777652	36	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	192530-192565	10	0.722
NC_015703_11	11.102\|5779005\|38\|NC_015703\|PILER-CR	5779005-5779042	38	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	518240-518277	10	0.737
NC_015703_11	11.102\|5779005\|38\|NC_015703\|PILER-CR	5779005-5779042	38	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	232025-232062	10	0.737
NC_015703_11	11.211\|5774038\|36\|NC_015703\|CRISPRCasFinder,CRT	5774038-5774073	36	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	329789-329824	10	0.722
NC_015703_11	11.271\|5778016\|34\|NC_015703\|CRISPRCasFinder,CRT	5778016-5778049	34	MN693348	Marine virus AFVG_25M369, complete genome	6690-6723	10	0.706
NC_015703_11	11.10\|5772914\|37\|NC_015703\|PILER-CR	5772914-5772950	37	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	462047-462083	11	0.703
NC_015703_11	11.27\|5774037\|37\|NC_015703\|PILER-CR	5774037-5774073	37	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	329789-329825	11	0.703
NC_015703_11	11.194\|5772915\|36\|NC_015703\|CRISPRCasFinder,CRT	5772915-5772950	36	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	462047-462082	11	0.694
NC_015703_11	11.318\|5781122\|36\|NC_015703\|CRISPRCasFinder,CRT	5781122-5781157	36	NZ_CP014607	Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1 plasmid pTC1, complete sequence	17228-17263	11	0.694
NC_015703_11	11.134\|5781121\|37\|NC_015703\|PILER-CR	5781121-5781157	37	NZ_CP014607	Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1 plasmid pTC1, complete sequence	17228-17264	12	0.676
NC_015703_11	11.291\|5779337\|37\|NC_015703\|CRISPRCasFinder,CRT	5779337-5779373	37	NZ_KP294352	Paracoccus kondratievae strain NCIMB 13773 plasmid pKON1, complete sequence	61664-61700	13	0.649

1. spacer 8.1|3659851|31|NC_015703|CRISPRCasFinder matches to NZ_CP019876 (Komagataeibacter nataicola strain RZS01 plasmid pKNA01, complete sequence) position: , mismatch: 6, identity: 0.806

acatttattatttttctgttttgcggttcat	CRISPR spacer
acatttattatttttgtgtttttggaaacat	Protospacer
*************** ******  *.  ***

2. spacer 8.1|3659851|31|NC_015703|CRISPRCasFinder matches to NZ_CP017589 (Pantoea stewartii subsp. stewartii DC283 plasmid pDSJ08, complete sequence) position: , mismatch: 7, identity: 0.774

acatttattatttttctgttttgcggttcat	CRISPR spacer
gcctttattgtttttctgttttacggtttcc	Protospacer
.* ******.************.*****. .

3. spacer 8.1|3659851|31|NC_015703|CRISPRCasFinder matches to MN693946 (Marine virus AFVG_250M886, complete genome) position: , mismatch: 8, identity: 0.742

acatttattatttttctgttttgcggttcat	CRISPR spacer
tcatttattatttttccgatttgcgtgacga	Protospacer
 ***************.* ******   *.

4. spacer 11.81|5777617|36|NC_015703|PILER-CR matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.778

cacgcgttcgtgtctccgtcgatgcg--tcccatcggt	CRISPR spacer
cacgcgttcgggtcgccgtcgatgcggctgccgccc--	Protospacer
********** *** ***********  * **..*

5. spacer 11.211|5774038|36|NC_015703|CRISPRCasFinder,CRT matches to MN694297 (Marine virus AFVG_250M922, complete genome) position: , mismatch: 8, identity: 0.778

aggttttttcatggtcctccaccttccagccgtact-	CRISPR spacer
tcgaattttcctggtcctcctccttccagcc-tgctc	Protospacer
  *  ***** ********* ********** *.**

6. spacer 11.265|5777618|35|NC_015703|CRISPRCasFinder,CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.771

acgcgttcgtgtctccgtcgatgcg--tcccatcggt	CRISPR spacer
acgcgttcgggtcgccgtcgatgcggctgccgccc--	Protospacer
********* *** ***********  * **..*

7. spacer 11.286|5779006|37|NC_015703|CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.784

aaaacttattggccttgtcgacgttggcccgcgcctt	CRISPR spacer
gttgctctttggccttgtcgaggttggcctgcgcctt	Protospacer
.  .**. ************* *******.*******

8. spacer 11.286|5779006|37|NC_015703|CRISPRCasFinder,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 8, identity: 0.784

aaaacttattggccttgtcgacgttggcccgcgcctt	CRISPR spacer
gttgctctttggccttgtcgaggttggcctgcgcctt	Protospacer
.  .**. ************* *******.*******

9. spacer 11.332|5782047|36|NC_015703|CRISPRCasFinder,CRT matches to MN694188 (Marine virus AFVG_250M625, complete genome) position: , mismatch: 8, identity: 0.778

caactaaaatgacaaaagcagaaaaattcttattaa	CRISPR spacer
tagatgaaattaaaaaagcagaaaaattcttagaaa	Protospacer
.*. *.**** * *******************  **

10. spacer 8.1|3659851|31|NC_015703|CRISPRCasFinder matches to NZ_CP032413 (Paenibacillus lautus strain E7593-69 plasmid pAZOPL1, complete sequence) position: , mismatch: 9, identity: 0.71

acatttattatttttctgttttgcggttcat	CRISPR spacer
ggagcgggtattttcccgttttgcggttcat	Protospacer
. * . . ******.*.**************

11. spacer 8.1|3659851|31|NC_015703|CRISPRCasFinder matches to NZ_CP035190 (Bacillus licheniformis strain SRCM103914 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

acatttattatttttctgttttgcggttcat	CRISPR spacer
attgatattatttgtctgtattgcggtttgg	Protospacer
*.   ******** ***** ********..

12. spacer 8.1|3659851|31|NC_015703|CRISPRCasFinder matches to NZ_CP020864 (Paenibacillus sp. Cedars plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

acatttattatttttctgttttgcggttcat	CRISPR spacer
ggagcgggtattttcccgttttgcggttcat	Protospacer
. * . . ******.*.**************

13. spacer 11.27|5774037|37|NC_015703|PILER-CR matches to MN694297 (Marine virus AFVG_250M922, complete genome) position: , mismatch: 9, identity: 0.757

caggttttttcatggtcctccaccttccagccgtact-	CRISPR spacer
atcgaattttcctggtcctcctccttccagcc-tgctc	Protospacer
   *  ***** ********* ********** *.**

14. spacer 11.102|5779005|38|NC_015703|PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.763

caaaacttattggccttgtcgacgttggcccgcgcctt	CRISPR spacer
agttgctctttggccttgtcgaggttggcctgcgcctt	Protospacer
 .  .**. ************* *******.*******

15. spacer 11.102|5779005|38|NC_015703|PILER-CR matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 9, identity: 0.763

caaaacttattggccttgtcgacgttggcccgcgcctt	CRISPR spacer
agttgctctttggccttgtcgaggttggcctgcgcctt	Protospacer
 .  .**. ************* *******.*******

16. spacer 11.148|5782046|37|NC_015703|PILER-CR matches to MN694188 (Marine virus AFVG_250M625, complete genome) position: , mismatch: 9, identity: 0.757

ccaactaaaatgacaaaagcagaaaaattcttattaa	CRISPR spacer
ttagatgaaattaaaaaagcagaaaaattcttagaaa	Protospacer
..*. *.**** * *******************  **

17. spacer 11.265|5777618|35|NC_015703|CRISPRCasFinder,CRT matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 9, identity: 0.743

acgcgttcgtgtctccgtcgatgcgtcccatcggt	CRISPR spacer
attggacggtgtcttcgtcgatgcgtcccttcggc	Protospacer
*.  * . ******.************** ****.

18. spacer 11.286|5779006|37|NC_015703|CRISPRCasFinder,CRT matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 9, identity: 0.757

aaaacttattggccttgtcgacgttggcccgcgcctt	CRISPR spacer
gttgctccgtggccttgtcgaggttggcctgcgcctt	Protospacer
.  .**.  ************ *******.*******

19. spacer 11.286|5779006|37|NC_015703|CRISPRCasFinder,CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 9, identity: 0.757

aaaacttattggccttgtcgacgttggcccgcgcctt	CRISPR spacer
gttgctccgtggccttgtcgaggttggcctgcgcctt	Protospacer
.  .**.  ************ *******.*******

20. spacer 11.81|5777617|36|NC_015703|PILER-CR matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 10, identity: 0.722

cacgcgttcgtgtctccgtcgatgcgtcccatcggt	CRISPR spacer
gattggacggtgtcttcgtcgatgcgtcccttcggc	Protospacer
 *.  * . ******.************** ****.

21. spacer 11.102|5779005|38|NC_015703|PILER-CR matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 10, identity: 0.737

caaaacttattggccttgtcgacgttggcccgcgcctt	CRISPR spacer
tgttgctccgtggccttgtcgaggttggcctgcgcctt	Protospacer
..  .**.  ************ *******.*******

22. spacer 11.102|5779005|38|NC_015703|PILER-CR matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 10, identity: 0.737

caaaacttattggccttgtcgacgttggcccgcgcctt	CRISPR spacer
tgttgctccgtggccttgtcgaggttggcctgcgcctt	Protospacer
..  .**.  ************ *******.*******

23. spacer 11.211|5774038|36|NC_015703|CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 10, identity: 0.722

aggttttttcatggtcctccaccttccagccgtact	CRISPR spacer
aggttttttcatgctcctcctccttcttcatctatg	Protospacer
************* ****** *****.   . **.

24. spacer 11.271|5778016|34|NC_015703|CRISPRCasFinder,CRT matches to MN693348 (Marine virus AFVG_25M369, complete genome) position: , mismatch: 10, identity: 0.706

aaataaaaaacaagagaaaagactggaaccacaa	CRISPR spacer
agtgaaaaaaaaagtgaaaagactggaaagcctt	Protospacer
*.  ****** *** *************   *

25. spacer 11.10|5772914|37|NC_015703|PILER-CR matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 11, identity: 0.703

caaagaacccgaagcgaagccgccgccgccattaaag	CRISPR spacer
ccgtcgacctgaagcgaagccgccgccgcaatggcaa	Protospacer
* .  .***.******************* ** . *.

26. spacer 11.27|5774037|37|NC_015703|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 11, identity: 0.703

caggttttttcatggtcctccaccttccagccgtact	CRISPR spacer
taggttttttcatgctcctcctccttcttcatctatg	Protospacer
.************* ****** *****.   . **.

27. spacer 11.194|5772915|36|NC_015703|CRISPRCasFinder,CRT matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 11, identity: 0.694

aaagaacccgaagcgaagccgccgccgccattaaag	CRISPR spacer
cgtcgacctgaagcgaagccgccgccgcaatggcaa	Protospacer
 .  .***.******************* ** . *.

28. spacer 11.318|5781122|36|NC_015703|CRISPRCasFinder,CRT matches to NZ_CP014607 (Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1 plasmid pTC1, complete sequence) position: , mismatch: 11, identity: 0.694

gcagttttttaaaaataagttcattgctgctgtcaa	CRISPR spacer
aactatgtttaaaaataaattaattgctgctgttgt	Protospacer
.    * ***********.** ***********..

29. spacer 11.134|5781121|37|NC_015703|PILER-CR matches to NZ_CP014607 (Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1 plasmid pTC1, complete sequence) position: , mismatch: 12, identity: 0.676

cgcagttttttaaaaataagttcattgctgctgtcaa	CRISPR spacer
taactatgtttaaaaataaattaattgctgctgttgt	Protospacer
..    * ***********.** ***********..

30. spacer 11.291|5779337|37|NC_015703|CRISPRCasFinder,CRT matches to NZ_KP294352 (Paracoccus kondratievae strain NCIMB 13773 plasmid pKON1, complete sequence) position: , mismatch: 13, identity: 0.649

aggcgcaggcggaagcggctatcgtggagattgtgcg	CRISPR spacer
gggcgcaggcggaagcggccatcgcggccgccaaaaa	Protospacer
.******************.****.**  .... . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3842143 : 3913996

Trichoplusia_ni_ascovirus(33.33%)

integrase,transposase,tRNA,terminase

attL 3907833:3907881|attR 3914157:3914205

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013928967.1\|3842143_3842602_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_013928968.1\|3842629_3843199_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_041340853.1\|3843883_3844825_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_013928971.1\|3844940_3845531_+\|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	NA	NA	NA	NA
WP_013928972.1\|3845947_3847288_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013928974.1\|3848282_3849794_-	AAA family ATPase	NA	NA	NA	NA
WP_169704745.1\|3849833_3850367_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013928978.1\|3850766_3852041_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013928979.1\|3852153_3853335_+	hypothetical protein	NA	NA	NA	NA
WP_013928980.1\|3853684_3854557_+	toprim domain-containing protein	NA	NA	NA	NA
WP_013928982.1\|3854988_3856467_-	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_013928984.1\|3857682_3858843_+	acyltransferase	NA	NA	NA	NA
WP_013928985.1\|3858854_3859208_-	Hpt domain-containing protein	NA	NA	NA	NA
WP_013928986.1\|3859252_3860608_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_013928987.1\|3860867_3861758_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_013928988.1\|3861893_3862625_+	DUF1080 domain-containing protein	NA	NA	NA	NA
WP_013928989.1\|3862621_3864004_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_013928990.1\|3864021_3864912_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_013928991.1\|3865157_3865946_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_013928992.1\|3866037_3866850_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_013928993.1\|3867245_3868010_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.5e-17	28.8
WP_041340863.1\|3868210_3868486_+	hypothetical protein	NA	NA	NA	NA
WP_013928994.1\|3868488_3869634_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_013928995.1\|3869654_3870971_+	idonate transporter	NA	NA	NA	NA
WP_013928996.1\|3871044_3871632_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013928997.1\|3871731_3872838_+	FecR family protein	NA	NA	NA	NA
WP_013928998.1\|3873025_3876451_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_013928999.1\|3876480_3877935_+	SusD/RagB family nutrient-binding outer membrane lipoprotein	NA	NA	NA	NA
WP_013929000.1\|3877999_3879433_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013929001.1\|3879462_3880818_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_013929002.1\|3880902_3882192_+	hypothetical protein	NA	NA	NA	NA
WP_013929003.1\|3882381_3883809_+	hypothetical protein	NA	NA	NA	NA
WP_013929004.1\|3883944_3885186_+	MFS transporter	NA	NA	NA	NA
WP_013929005.1\|3885247_3886114_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_169705133.1\|3886278_3886530_+	alpha-L-fucosidase	NA	NA	NA	NA
WP_169704747.1\|3886604_3886820_+\|transposase	transposase	NA	NA	NA	NA
WP_081469267.1\|3888240_3888600_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.4e-09	45.3
WP_013929007.1\|3888613_3888835_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013929008.1\|3888821_3889154_+	HipA N-terminal domain-containing protein	NA	NA	NA	NA
WP_013929009.1\|3889150_3890095_+	HipA domain-containing protein	NA	NA	NA	NA
WP_081469268.1\|3890293_3890707_+	SIR2 family protein	NA	NA	NA	NA
WP_013929010.1\|3890642_3892367_+	hypothetical protein	NA	NA	NA	NA
WP_013929011.1\|3892363_3893086_+	hypothetical protein	NA	NA	NA	NA
WP_169704749.1\|3893218_3893356_-	hypothetical protein	NA	NA	NA	NA
WP_041340880.1\|3893449_3893728_-	specificity determinant HsdS	NA	NA	NA	NA
WP_013929014.1\|3893804_3900041_-	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_013929015.1\|3900361_3901222_-	DUF1669 domain-containing protein	NA	NA	NA	NA
WP_013929016.1\|3901288_3902668_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_013929017.1\|3902667_3904128_-	type I restriction-modification system subunit M	A0A220A2U4	Liberibacter_phage	3.6e-25	26.4
WP_013929018.1\|3904132_3907372_-	type I restriction-modification system endonuclease	NA	NA	NA	NA
3907833:3907881	attL	NA	NA	NA	NA
WP_013929019.1\|3908061_3909429_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_013929020.1\|3909527_3910418_+	hypothetical protein	NA	NA	NA	NA
WP_013929021.1\|3910567_3910846_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013929022.1\|3910832_3911258_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_169704751.1\|3911824_3912277_+	hypothetical protein	NA	NA	NA	NA
WP_013929025.1\|3912470_3912758_+	hypothetical protein	NA	NA	NA	NA
WP_013929026.1\|3912754_3913000_+	hypothetical protein	NA	NA	NA	NA
WP_013929027.1\|3912992_3913190_+	hypothetical protein	NA	NA	NA	NA
WP_169704753.1\|3913224_3913428_+	hypothetical protein	NA	NA	NA	NA
WP_013929029.1\|3913534_3913996_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
3914157:3914205	attR	NA	NA	NA	NA

DBSCAN-SWA_2

4876977 : 4956982

Methanothermobacter_phage(20.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013929869.1\|4876977_4877532_-\|transposase	transposase	NA	NA	NA	NA
WP_013929870.1\|4878730_4879591_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_041343689.1\|4879752_4881330_+	serine dehydratase	NA	NA	NA	NA
WP_013929872.1\|4881391_4882951_+	hypothetical protein	NA	NA	NA	NA
WP_013929873.1\|4882963_4883800_+	ceramidase domain-containing protein	NA	NA	NA	NA
WP_013929874.1\|4883904_4887117_+	glycosyl hydrolase	NA	NA	NA	NA
WP_013929875.1\|4887175_4888714_+	arylsulfatase	NA	NA	NA	NA
WP_013929876.1\|4888760_4890080_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_169705163.1\|4890126_4890555_-	cytochrome c	NA	NA	NA	NA
WP_013929878.1\|4890635_4891274_-	SCO family protein	NA	NA	NA	NA
WP_013929879.1\|4891302_4891734_-	hypothetical protein	NA	NA	NA	NA
WP_013929880.1\|4891772_4893464_-	DNA repair protein RecN	NA	NA	NA	NA
WP_013929881.1\|4893538_4893766_-	hypothetical protein	NA	NA	NA	NA
WP_013929882.1\|4893779_4894709_-	DUF4835 family protein	NA	NA	NA	NA
WP_013929883.1\|4894742_4895954_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.8e-28	30.0
WP_013929884.1\|4896035_4896344_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_013929885.1\|4896373_4897282_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_013929886.1\|4897377_4898004_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_013929888.1\|4900532_4901477_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_013929889.1\|4901674_4903198_+	carboxylesterase family protein	A0A0G2Y6W1	Acanthamoeba_polyphaga_mimivirus	1.4e-35	43.0
WP_169704829.1\|4903217_4904510_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_013929891.1\|4904600_4905101_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_013929892.1\|4905097_4906399_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_041341296.1\|4906554_4906932_-	hypothetical protein	NA	NA	NA	NA
WP_169705165.1\|4907255_4909817_+	glycoside hydrolase family 95 protein	NA	NA	NA	NA
WP_013929895.1\|4909813_4911970_+	DUF5110 domain-containing protein	NA	NA	NA	NA
WP_013929896.1\|4912562_4914770_-	carbohydrate binding family 9 domain-containing protein	NA	NA	NA	NA
WP_041343698.1\|4915093_4917073_-	S9 family peptidase	NA	NA	NA	NA
WP_013929898.1\|4917382_4917562_+	hypothetical protein	NA	NA	NA	NA
WP_013929899.1\|4917605_4920242_+	cyanophycin synthetase	NA	NA	NA	NA
WP_013929900.1\|4920284_4921154_+	cyanophycinase	NA	NA	NA	NA
WP_013929901.1\|4921150_4922083_+	isoaspartyl peptidase/L-asparaginase	NA	NA	NA	NA
WP_013929902.1\|4922397_4924425_-\|protease	protease Lon-related BREX system protein BrxL	NA	NA	NA	NA
WP_013929903.1\|4924434_4926948_-	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_013929904.1\|4926951_4928316_-	putative DNA binding domain-containing protein	A0A088F7M4	Mycobacterium_phage	6.4e-24	24.2
WP_013929905.1\|4928312_4929260_-	HipA domain-containing protein	NA	NA	NA	NA
WP_013929906.1\|4929256_4929592_-	HipA N-terminal domain-containing protein	NA	NA	NA	NA
WP_013929907.1\|4929578_4929800_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013929908.1\|4929911_4933271_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_013929909.1\|4933429_4936951_-	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_013929910.1\|4936955_4937549_-	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_013929911.1\|4937551_4938169_-	DUF1819 family protein	NA	NA	NA	NA
WP_013929912.1\|4938765_4940112_-\|transposase	transposase	NA	NA	NA	NA
WP_041341303.1\|4942151_4942733_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_013929913.1\|4943815_4945027_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.8e-63	63.1
WP_013929914.1\|4945136_4946852_-	AAA family ATPase	A0A1L3KIW1	Beihai_Nido-like_virus	6.9e-07	24.4
WP_169705167.1\|4947260_4947365_+	CRISPR-associated DxTHG motif protein	NA	NA	NA	NA
WP_013929916.1\|4951747_4955032_-	DUF499 domain-containing protein	NA	NA	NA	NA
WP_041341309.1\|4955046_4955400_-	hypothetical protein	NA	NA	NA	NA
WP_013926237.1\|4955635_4956982_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

4975068 : 5035054

Bacillus_phage(22.22%)

integrase,transposase,tRNA

attL 4969170:4969186|attR 5028118:5028134

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4969170:4969186	attL	NA	NA	NA	NA
WP_013929926.1\|4975068_4976310_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_013929927.1\|4976856_4977957_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_013929928.1\|4977999_4978731_+	hypothetical protein	NA	NA	NA	NA
WP_013929929.1\|4978849_4980547_-	sodium:solute symporter	NA	NA	NA	NA
WP_013929930.1\|4980640_4980805_-	hypothetical protein	NA	NA	NA	NA
WP_013929931.1\|4981022_4981778_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	9.4e-09	24.4
WP_013929932.1\|4981885_4982362_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_013929933.1\|4982408_4983185_+	glucose 1-dehydrogenase	NA	NA	NA	NA
WP_013929934.1\|4983232_4983724_-	dihydrofolate reductase	A0A076GDN3	Bacillus_phage	1.7e-19	34.6
WP_013929935.1\|4984038_4986369_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_013929936.1\|4986514_4987834_-\|tRNA	tRNA lysidine(34) synthetase TilS	A0A0N7G7K4	Chrysochromulina_ericina_virus	5.3e-07	22.6
WP_013929937.1\|4987930_4988926_-	TIM barrel protein	NA	NA	NA	NA
WP_013929938.1\|4988991_4992738_-	ThuA domain-containing protein	NA	NA	NA	NA
WP_041341320.1\|4992892_4993621_+	NUDIX hydrolase	NA	NA	NA	NA
WP_013929940.1\|4993788_4995546_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-38	26.1
WP_013929941.1\|4995549_4995999_-	hypothetical protein	NA	NA	NA	NA
WP_013929942.1\|4996270_4996726_-	hypothetical protein	NA	NA	NA	NA
WP_013929943.1\|4996929_4998234_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_013929944.1\|4998380_4998506_-	30S ribosomal protein THX	NA	NA	NA	NA
WP_169704833.1\|4998822_4999344_+	LemA family protein	NA	NA	NA	NA
WP_013929946.1\|4999462_4999948_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_013929947.1\|4999951_5000584_+	hypothetical protein	NA	NA	NA	NA
WP_013929948.1\|5000633_5001134_+	hypothetical protein	NA	NA	NA	NA
WP_013929949.1\|5001155_5002004_+	TraB/GumN family protein	NA	NA	NA	NA
WP_013929950.1\|5002256_5003075_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_013929951.1\|5003118_5003778_-	phosphatidylserine decarboxylase family protein	NA	NA	NA	NA
WP_041343712.1\|5003884_5005159_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_013929953.1\|5005544_5005928_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_013929954.1\|5006029_5006929_-	SDR family oxidoreductase	A0A167REC2	Powai_lake_megavirus	9.8e-05	34.8
WP_013929955.1\|5007078_5007885_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_013929956.1\|5008183_5009302_+	aminotransferase class V-fold PLP-dependent enzyme	A0A1V0SL56	Klosneuvirus	1.7e-19	26.9
WP_013929957.1\|5009605_5010487_-	toprim domain-containing protein	NA	NA	NA	NA
WP_013929959.1\|5010858_5012046_-	hypothetical protein	NA	NA	NA	NA
WP_013929960.1\|5012150_5012345_-	hypothetical protein	NA	NA	NA	NA
WP_013929961.1\|5012355_5013618_-\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
WP_013929962.1\|5013614_5014883_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	5.0e-23	37.7
WP_041341328.1\|5014974_5015235_-	hypothetical protein	NA	NA	NA	NA
WP_013929964.1\|5015337_5015847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041341332.1\|5016018_5016234_+	hypothetical protein	NA	NA	NA	NA
WP_013929965.1\|5017172_5017547_-	hypothetical protein	NA	NA	NA	NA
WP_013929966.1\|5017628_5018204_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_169704835.1\|5018414_5018609_-	hypothetical protein	NA	NA	NA	NA
WP_013929968.1\|5018957_5019749_+\|integrase	phage integrase SAM-like domain-containing protein	NA	NA	NA	NA
WP_041341337.1\|5019917_5020418_+	hypothetical protein	NA	NA	NA	NA
WP_041341340.1\|5021023_5021491_+	hypothetical protein	NA	NA	NA	NA
WP_169704837.1\|5021798_5022008_+	hypothetical protein	NA	NA	NA	NA
WP_081469290.1\|5021980_5022244_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_169704839.1\|5022637_5023207_+	ATP-binding domain-containing protein	A0A0S0N5C8	Pseudomonas_phage	4.1e-09	38.1
WP_169704841.1\|5023430_5024102_+	CRISPR-associated endonuclease Cas6	NA	NA	NA	NA
WP_013929971.1\|5024112_5025708_+	hypothetical protein	NA	NA	NA	NA
WP_013929972.1\|5025711_5026290_+	hypothetical protein	NA	NA	NA	NA
WP_041341346.1\|5026293_5026833_+	hypothetical protein	NA	NA	NA	NA
WP_169704843.1\|5027283_5027520_+	hypothetical protein	NA	NA	NA	NA
WP_041341355.1\|5028613_5029102_+	DUF1887 family protein	NA	NA	NA	NA
5028118:5028134	attR	NA	NA	NA	NA
WP_013929973.1\|5029136_5030201_+	TIGR02221 family CRISPR-associated protein	NA	NA	NA	NA
WP_013928579.1\|5030181_5031198_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.9e-65	42.2
WP_013929974.1\|5031347_5031551_-	hypothetical protein	NA	NA	NA	NA
WP_013929976.1\|5031915_5033052_-	gliding motility-associated C-terminal domain-containing protein	NA	NA	NA	NA
WP_013929977.1\|5033815_5035054_-\|transposase	ISLre2-like element ISRsl1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015694

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_015694_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015694_1

52-149

Orphan

Consensus_repeat	Method
AAAGTTATTTTAGACTGATAAAAAGTTATTTTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015694_1

>merge|NC_015694|1|52-149|CRISPRCasFinder
AAAGTTATTTTAGACTGATAAAAAGTTATTTTTAGACTGATGAAAAGTTATTTTAGACTGATAAAAAGTTATTTTAGACTGATAAAAAGTTATTTTAG

>NC_015694|1|1|52-149|CRISPRCasFinder
AAAGTTATTTTAGACTGATAAAAAGTTATTTTTA	GACTGATGAAAAGTTATTTTAGACTGATAA
AAAGTTATTTTAGACTGATAAAAAGTTATTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015694.1\|WP_013921700.1\|6148_6463_+\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|274228
NC_015694.1\|WP_013921692.1\|1029_1659_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NC_015694.1\|WP_013921698.1\|4388_5408_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NC_015694.1\|WP_013921701.1\|6660_7215_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NC_015694.1\|WP_013921699.1\|5854_6133_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226079
NC_015694.1\|WP_013921696.1\|3352_3715_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|320511
NC_015694.1\|WP_013921695.1\|2514_3282_-\|hypothetical-protein	unknown	unknown	unknown
NC_015694.1\|WP_013921697.1\|4047_4392_+\|hypothetical-protein	unknown	unknown	unknown
NC_015694.1\|WP_013921693.1\|1735_2005_+\|hypothetical-protein	unknown	unknown	unknown
NC_015694.1\|WP_013921694.1\|2111_2513_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015694.1\|WP_013921700.1\|6148_6463_+\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|274228	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair. [Regulatory functions, DNA interactions, Regulatory functions, Protein interactions, Mobile and extrachromosomal element functions, Other].	3.60943e-36
NC_015694.1\|WP_013921698.1\|4388_5408_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	3.62171e-06
NC_015694.1\|WP_013921701.1\|6660_7215_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.000617982
NC_015694.1\|WP_013921699.1\|5854_6133_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226079	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only].	1.0762e-16
NC_015694.1\|WP_013921696.1\|3352_3715_-\|hypothetical-protein	gnl\|CDD\|320511	cd15389, 7tmA_GPR83, G protein-coupled receptor 83, member of the class A family of seven-transmembrane G protein-coupled receptors. GPR83, also known as GPR72, is widely expressed in the brain, including hypothalamic nuclei which is involved in regulating energy balance and food intake. The hypothalamic expression of GPR83 is tightly regulated in response to nutrient availability and is decreased in obese mice. A recent study suggests that GPR83 has a critical role in the regulation of systemic energy metabolism via ghrelin-dependent and ghrelin-independent mechanisms. GPR83 shares a significant amino acid sequence identity with the tachykinin receptors, however its endogenous ligand is unknown.	0.0027841
NC_015694.1\|WP_013921692.1\|1029_1659_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	7.55523e-36

>NC_015694.1|WP_013921692.1|1029_1659_+|ParA-family-protein
MIISVTSLKGGVGKSTIAQNLAVCMAHNGYKVCIADADTNQSSLRWSSLRSDELPIIPAFGTPEKTLSANIKQLALDYEIVIIDGTPTLDKITSKIILLADMLLVPILPSGLDIWATEQFLERYEDAKIEKEKDIPAYMILNQYQSNITFNREVKEALTETSIQLFNSTLRPRTAYREVIIQGKGVFEYKDEKAKYEFLDLYNEVVNVM
>NC_015694.1|WP_013921693.1|1735_2005_+|hypothetical-protein
MEKENKFGLKSAIKMPPKKEIRTEPVEVEKTEKAVQAIHSGKGKVVRLSLDVDEELYKELKIHQIRKGFKTTREYLLHLISDDIKNPEA
>NC_015694.1|WP_013921694.1|2111_2513_-|hypothetical-protein
MQKDKVYFARKFGVAEKDIVPEFLPVLIVSDQLAESTQALIEKVNGSITTHQHFYDKASPWAVFMNRWGWGAWAFLGLVIFSFLLMFFSTNRQKLAQLESVMIYNDSTKTYFIDRRFYKVVNTKSKKGIELIP
>NC_015694.1|WP_013921695.1|2514_3282_-|hypothetical-protein
MTVKHTATETKNVSVFLQSKGGVGKSFLAYFKLLTLDPDISATVLLDSSQKANQNAVRHTNILGSQKVKVWDIYNNANEYKKSHFFDVFEKIAELPASDIILDIGAPESNVLREGLTTDQELTGENLKYVAQELGLNIIFNVVVSGADDNVNENINYFNAVNKLLGEYFPVNMLINDYTFKADGESDTLKQDLINNNIAGEEQIFIAGKSGNRNNDNPYLTIIRLANGEISLNDATANMSTRIRVKNILAPLKAV
>NC_015694.1|WP_013921696.1|3352_3715_-|hypothetical-protein
MITLQEIKIRKLARKRKWGAPLLLYVIPKLEQGYTYDAVAEWLTNEHGIIITAKQLIELKAKLKPLKTDTVPNPIPSSMTAKDSTVNETQNKIVQNKESRMVEELPFDFRRPTPEPKKLI
>NC_015694.1|WP_013921697.1|4047_4392_+|hypothetical-protein
MSERKKGGRPTLGEHKKGKGLYVSFTEAELELLSRKAGSVGKSKQAYLRELLVKGYVKNIDTAEQQEIKRGLIGLSNNVNQLAKLAHINGLKTMQTQVNGVLEALDELLKKYRR
>NC_015694.1|WP_013921698.1|4388_5408_+|relaxase/mobilization-nuclease-domain-containing-protein
MIAKALGTGKSFSGKINYLFDGKIEDRKVKDKMASVISHSENVRVPFSHEDKTGISRMKADFIERSKSYKYFDKSKGYIGEHVISLTEHDQRELRGKGNMKSITDEYIKLTGIDKTQYVAITHHDTSNPHVHILFNRVTDAGKIFDATYEKKRAMYAGIVLSQKYGLSLLGELQKVSEDKGVKVMRMQMGDYRELRAGNALLREARNFHHLEKLAEAKGQTLEQRGDSVFLDKKEYSKADLETMFWQNRTEALTAKSEKGSVQALVEAKSVDAGQPVTISPIVFSEEGTAQVTNEKRESRVSKPTASVEEGKAKRSRKKRLPDYQQKVTKLKTSKGLRL
>NC_015694.1|WP_013921699.1|5854_6133_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MIQSIRHKALLQYYTEGNGSKLPSQYLRKINRILDQLDAVSSTDDIVAMGSGIHKLTGNLADYWSIKVTPNYRIIFRFENGDVHDIDFLDYH
>NC_015694.1|WP_013921700.1|6148_6463_+|HigA-family-addiction-module-antidote-protein
MLKRNLPPVHPGEILREDYINEHNLTISEVAKGLGITRANLSAIVNGRAGISPEMAVKLAEAFGNTAQFWVNLQKNYELWHAERSVNRSNIRHFWEEWKAPQPA
>NC_015694.1|WP_013921701.1|6660_7215_+|hypothetical-protein
MFRELDIREQFYFAKNNYTNWLPRNPDENMFVQFMMDIYRSSEKIKESSSEVGVNHFNRGNKLYSQGDFRGAISSYTASFKVYPMCDTFLNLSMSFAKIKQYTHGLQISCDALAIADYLDIEDKLPVIYFQRGAIMAELLDSAWELSIANTELVEFALDNFRQAEALGVPQARQYIKNIMDVLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015694_1	1.1\|86\|30\|NC_015694\|CRISPRCasFinder	86-115	30	NC_015694.1	128-157	1	0.967

1. spacer 1.1|86|30|NC_015694|CRISPRCasFinder matches to position: 128-157, mismatch: 1, identity: 0.967

gactgatgaaaagttattttagactgataa	CRISPR spacer
gactgataaaaagttattttagactgataa	Protospacer
*******.**********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015694_1	1.1\|86\|30\|NC_015694\|CRISPRCasFinder	86-115	30	NC_015694	Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence	86-115	0	1.0
NC_015694_1	1.1\|86\|30\|NC_015694\|CRISPRCasFinder	86-115	30	NC_015694	Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence	107-136	1	0.967
NC_015694_1	1.1\|86\|30\|NC_015694\|CRISPRCasFinder	86-115	30	NC_015694	Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence	128-157	1	0.967
NC_015694_1	1.1\|86\|30\|NC_015694\|CRISPRCasFinder	86-115	30	NC_015694	Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence	43-72	5	0.833
NC_015694_1	1.1\|86\|30\|NC_015694\|CRISPRCasFinder	86-115	30	NZ_CP046706	Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence	60569-60598	6	0.8
NC_015694_1	1.1\|86\|30\|NC_015694\|CRISPRCasFinder	86-115	30	NZ_AP018256	Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome	125154-125183	9	0.7

1. spacer 1.1|86|30|NC_015694|CRISPRCasFinder matches to NC_015694 (Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence) position: , mismatch: 0, identity: 1.0

gactgatgaaaagttattttagactgataa	CRISPR spacer
gactgatgaaaagttattttagactgataa	Protospacer
******************************

2. spacer 1.1|86|30|NC_015694|CRISPRCasFinder matches to NC_015694 (Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence) position: , mismatch: 1, identity: 0.967

gactgatgaaaagttattttagactgataa	CRISPR spacer
gactgataaaaagttattttagactgataa	Protospacer
*******.**********************

3. spacer 1.1|86|30|NC_015694|CRISPRCasFinder matches to NC_015694 (Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence) position: , mismatch: 1, identity: 0.967

gactgatgaaaagttattttagactgataa	CRISPR spacer
gactgataaaaagttattttagactgataa	Protospacer
*******.**********************

4. spacer 1.1|86|30|NC_015694|CRISPRCasFinder matches to NC_015694 (Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequence) position: , mismatch: 5, identity: 0.833

-gactgatgaaaagttattttagactgataa	CRISPR spacer
ttatttat-taaagttattttagactgataa	Protospacer
  *.* **  *********************

5. spacer 1.1|86|30|NC_015694|CRISPRCasFinder matches to NZ_CP046706 (Nostoc sp. ATCC 53789 plasmid pNsp_c, complete sequence) position: , mismatch: 6, identity: 0.8

gactg-atgaaaagttattttagactgataa	CRISPR spacer
-actatatgaaaaattattttaggctgattt	Protospacer
 ***. *******.*********.*****

6. spacer 1.1|86|30|NC_015694|CRISPRCasFinder matches to NZ_AP018256 (Calothrix sp. NIES-4071 plasmid plasmid1 DNA, complete genome) position: , mismatch: 9, identity: 0.7

gactgatgaaaagttattttagactgataa	CRISPR spacer
ttgagatgaaaagatagtttagactgactt	Protospacer
    ********* ** **********.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_015693

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_015693_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015693_1

64159-64257

Orphan

Consensus_repeat	Method
CGACAGAATCCTCGTGAACTGCGACAGAATCCTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015693_1

>merge|NC_015693|1|64159-64257|CRISPRCasFinder
CGACAGAATCCTCGTGAACTGCGACAGAATCCTCGTGAACTGCGACAGAATCCTCGCAGAACTGCGACAGAATCCTCGTGAACTGCGACAGAATCCTCG

>NC_015693|1|1|64159-64257|CRISPRCasFinder
CGACAGAATCCTCGTGAACTGCGACAGAATCCTCG	TGAACTGCGACAGAATCCTCGCAGAACTG
CGACAGAATCCTCGTGAACTGCGACAGAATCCTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015693.1\|WP_013921654.1\|58757_58925_+\|hypothetical-protein	unknown	unknown	unknown
NC_015693.1\|WP_013921664.1\|68428_68749_+\|hypothetical-protein	unknown	unknown	unknown
NC_015693.1\|WP_013921653.1\|57899_58637_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224332
NC_015693.1\|WP_013921665.1\|68740_69037_-\|hypothetical-protein	unknown	unknown	unknown
NC_015693.1\|WP_013921651.1\|53195_54656_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl\|CDD\|185760
NC_015693.1\|WP_013921666.1\|69500_70529_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274817
NC_015693.1\|WP_013921650.1\|52299_53190_-\|LamG-domain-containing-protein	unknown	unknown	gnl\|CDD\|379155
NC_015693.1\|WP_013921668.1\|71198_72242_+\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982
NC_015693.1\|WP_013921659.1\|61917_62757_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319261
NC_015693.1\|WP_013921663.1\|67008_68181_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_015693.1\|WP_013921657.1\|60387_61200_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NC_015693.1\|WP_013921649.1\|50966_52295_-\|endo-1,4-beta-xylanase	unknown	unknown	gnl\|CDD\|214750
NC_015693.1\|WP_013921662.1\|66550_66790_-\|hypothetical-protein	unknown	unknown	unknown
NC_015693.1\|WP_013921670.1\|73495_74473_+\|ThuA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377643
NC_015693.1\|WP_013921656.1\|59747_60383_+\|hypothetical-protein	unknown	unknown	unknown
NC_015693.1\|WP_013921669.1\|72251_73292_+\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|234870
NC_015693.1\|WP_013921660.1\|62770_63715_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NC_015693.1\|WP_013921671.1\|74535_75786_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238141
NC_015693.1\|WP_013921652.1\|54720_57708_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|274948
NC_015693.1\|WP_013921661.1\|64364_65267_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444

Protein	Function_ID	Function_description	E-value
NC_015693.1\|WP_013921666.1\|69500_70529_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274817	TIGR03858, LLM_2I7G, probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.	0
NC_015693.1\|WP_013921653.1\|57899_58637_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.05077e-33
NC_015693.1\|WP_013921651.1\|53195_54656_-\|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl\|CDD\|185760	cd08977, SusD, starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.	1.77382e-50
NC_015693.1\|WP_013921669.1\|72251_73292_+\|selenide,-water-dikinase-SelD	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
NC_015693.1\|WP_013921650.1\|52299_53190_-\|LamG-domain-containing-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	1.6417e-14
NC_015693.1\|WP_013921668.1\|71198_72242_+\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	1.03631e-132
NC_015693.1\|WP_013921659.1\|61917_62757_-\|hypothetical-protein	gnl\|CDD\|319261	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain. archaeal pNOB8 ParB acts in a plasmid partitioning system made up of 3 parts: AspA, ParA motor protein, and ParB, which links ParA to the protein-DNA superhelix. As demonstrated in Sulfolobus, AspA spreads along DNA, which allows ParB binding, and links to the Walker-motif containing ParA motor protein. The Sulfolobus ParB C-terminal domain resembles eukaryotic segregation protein CenpA, and other histones. This family is related to the N-terminal domain of ParB (Spo0J in Bacillus subtilis), a DNA-binding component of the prokaryotic parABS partitioning system and related proteins.	6.16614e-05
NC_015693.1\|WP_013921663.1\|67008_68181_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	4.90467e-53
NC_015693.1\|WP_013921657.1\|60387_61200_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	2.78e-19
NC_015693.1\|WP_013921649.1\|50966_52295_-\|endo-1,4-beta-xylanase	gnl\|CDD\|214750	smart00633, Glyco_10, Glycosyl hydrolase family 10.	5.60691e-49
NC_015693.1\|WP_013921670.1\|73495_74473_+\|ThuA-domain-containing-protein	gnl\|CDD\|377643	pfam06283, ThuA, Trehalose utilisation. This family consists of several bacterial ThuA like proteins. ThuA appears to be involved in utilisation of trehalose. The thuA and thuB genes form part of the trehalose/sucrose transport operon thuEFGKAB, which is located on the pSymB megaplasmid. The thuA and thuB genes are induced in vitro by trehalose but not by sucrose and the extent of its induction depends on the concentration of trehalose available in the medium.	5.58935e-30
NC_015693.1\|WP_013921660.1\|62770_63715_-\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	2.48185e-55
NC_015693.1\|WP_013921671.1\|74535_75786_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238141	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	1.16718e-14
NC_015693.1\|WP_013921652.1\|54720_57708_-\|TonB-dependent-receptor	gnl\|CDD\|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	0
NC_015693.1\|WP_013921661.1\|64364_65267_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.00454e-46

>NC_015693.1|WP_013921660.1|62770_63715_-|ParA-family-protein
MLTQDIVFRFLRSKPALNHSQIEKEAGLPSKTLYKAQGGLISLNEKHLDKLHPVLRNYGFTEEQFNKAKVISIVNHKGGVGKTTSTINIGKALSLLGNRVLMLDMDSQGNLSQCFGIHQPENQIVDSLLGKTDIPIIEVGQGLHLSPSDIQMAYRELELVNSIGSEKRLFNKLATVQSLYDYILIDCPPALNILTTCSLVASHECLIPIQPEASAYHGVENLFNRIFEIREHLNYSLRVKGIFFTMVHKNQSVHRTMIEHIRDIYGHFTIFNTMIETSTVIKQSQVAKQDLFEYSPKSNSANQYLNLAQELVIT
>NC_015693.1|WP_013921659.1|61917_62757_-|hypothetical-protein
MAKDFMSGIRKTTSQLPFSPFSEVERIKKQITILEELRQFITPLTNEEYSVLESNILNQGCKDPLTVWETTRKTVFPDDTEERAYVLIDGHNRYTICQKYDLDFKIVLLSFKDIEEVKDYMIDFQLGRRNLNPEQMSFFRGLRYNREKVGKGKYDREEGGMDISKHLAEEYKVSQRTIKNDGNFAKGIAKFIPRLQQEVLSGTTALSRTHIQELGKRDDIAQGTLTTLERIEPAESSVVPTVDELSIRKKEIARLAVNLSSKTDYSLLLEKVKELKNFI
>NC_015693.1|WP_013921657.1|60387_61200_+|RNA-polymerase-sigma-factor
MFFTENFNENNDDLLIQEALEGNKQSLEKLIKTHQDYVYNVALRLFLDPNDALDATQEVLIKVITHLNTFNGQSQFRTWLYRIVFNHFVNSPERKMEKIFIQFDRTITDFTNVEDSLDQSEIEEVRILCTTAMLMCLSREQRLLYIIGEVFRADHTIGAALFEITPANYRVKLHRAKVDLMTFVTGKCGIINPKNACRCPKKTKIMVEQEIIDKDNLRFNTSFTYKVSEIVKQKREALSDEIQLKLQYLFADSPFQIKNELDKLINDVVK
>NC_015693.1|WP_013921656.1|59747_60383_+|hypothetical-protein
MATMLLFGFTSCNAQTSETDKNFAKLGKPVSDSSTTQTLTITKVRKPWYAWRSLVVHKMKESIPEYQAIEGLNQKFYSFTENRKMFGGLYFWETEQDANKWFNKAWFDRIEKKYAEKGIVMYFGVQSVKSFATVNPNAKDLYAAITYKKEDTFFIDNSAVGLIKLLTLTDDKKQTCYLTIWQNKEQAETYFQKKNVTNEFFDVPFFIVNKI
>NC_015693.1|WP_013921654.1|58757_58925_+|hypothetical-protein
MESTVFQQRHKTIRLFTGQTDKSAPRRTDRLGFVGSSRLFSIEVVFLNGYTFRLL
>NC_015693.1|WP_013921653.1|57899_58637_-|helix-turn-helix-domain-containing-protein
MIQVINRALDILEIIAVDPEKPTSLGEIADALGLNHGTCANIMKTLVSRSYLEQVGTKKGYILGAKSYALTNNDAYRKDLVEAAKSEMEKLTEVTNENCLLAILKGEKRIVIHSTNAEQELQVRTSSEKHVYDSASGRMLLAMLSEPDIDRFIAKYGIPKTESWKEADTVENLKKLLSQFRKEECSLQMLAGRQVIGLAVPIQKESKAVASLSIYLPEYRYMLTDKTGLVHQLKMAAKRISQRLK
>NC_015693.1|WP_013921652.1|54720_57708_-|TonB-dependent-receptor
MKFKVYAWITGIYFLFSALPTMAQDRSVSGRVMGANDSAPLPGVSILVKGMNAGTTTDANGTFKMPVPTNAVLVFSFVGYTPKEVTVGNQTTLDVSLELDNRQLNEVVVVGYGTVKKSDLTGSLASVKSKEINAFPANNVLQALSGRAPGVQVTQNTGAPGANVSVRIRGTNSVQGSNEPLYVVDGFPTSGSNPTILNNSDIESIEILKDASATAIYGSRGANGVVLITTKQGKAGKTQVDYEGSYSIQTLRKKLDLMNAKEYATFYNMQAVNDKVAPYFTQAQIDGFGEGYDWQDLIFRKAPMQTHNLTVSGGNEKTRFSIGGSIFGQQGIIIGSDYNRYSLRANVTTDVSKKFNLSYGATLTNIQTSRQNNGGGNRGGSLISAAISAPPTLTPYNDDGSYRVLATAYPFISNVITNPLNYVNEQTDDITANRVLANVALTFKPFEGLVIKISGGIENSDDRNDSYTTTNFINSQGSANVSTTQGRSLLSENTVSYTKSFGKHSLSAVAGFTYQDFLNTSLGGSGVGFLSNVTETANLGSANTPGIPSSGYSFATLLSYLGRVNYSYNSKYLATVSFRADGSSRYSEGNKWGYFPSAALAWRVSEEEFLKNSSFISDLKIRASWGQTGSQAISPYATLNNLGAGKTVFDDALYNTFAPGTRLPGNLKWETTEQADFGIDAAFNNNRYRLTLDYYVKNTRDLLNTVQLPIGFGFTSTIQNVGQIQNKGVEIALDARVIDKDFKWDIGGNISFNRNKVMKLYNGADILGGSVGVTLINDNANLLREGQPMSVFFGYVKDGYTDLGKEKYKDLNADGLINQLDKTIIGNPNPDFIYGLNSVMSYKGLELTLFLQGTQGNDLLNVSSINNTLDYGFGLNMPREVLYNHWSPTNPNAKYPVISRSNSYNYSDRLVEDGSYLRLRNIQLAYSLPLQKWRVNWMRTAQIYAGGQNLLTFTKYSWWDPETNSQGGANSIGQGIDHYSYPTSKAVTFGLRVGF
>NC_015693.1|WP_013921651.1|53195_54656_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKNIFKILAFILLLWGAGGCSDVLVEAPKAVAVETFYNTAAEVETAVNAAYQELRAVNGISGQLGAQVEAYTDYSYGRGSYQVLSDFQGLNSTNIPRTDEGWRLFYLSIRNANLVIQNAPKGSRISQADIVKYVAEAKFLRAYNYFWLVRNWGGVPIRTEATLTEPNVKRSTAEEVYKLIIADLKEAETNLPDKGAQVGRATKWAAKAALAEVYFTLNQYAEARDKADEIIKSGQFSLIPVTVAADFDKVFGPTVVTSPEEIFYLKMTRQNNQGMYLAMFAHHPGTRLHGAGGFFAHYTDSQTNPVYRTWDNNDLRKSYNWVSWNIGLGANSLLCKKFSDPLAPSGTAAGNDFPIYRYADVLLLYAEAACRAGNAPTAAAMEALNQVRRRAYGRPITTPSTVDFKLADYTAATFNDLVLRERGYETQYEGKRWLDLKRLGTPKLREIIKAATGKDVADKHLLWPIPVGELNFNTALDPCKDQNPGY
>NC_015693.1|WP_013921650.1|52299_53190_-|LamG-domain-containing-protein
MKKNIPFHCSCLLLFLGLLSGSVHGQSKTNSMQQLLITKGLVALWDFKEEEGLPRKAIGAADFPLTEQNGTLPRINEGPLSGYSTLFGNKAFLSLPNAELGKLNIYGKNQGVTVMGWVKWTGEQTGFVGGIWNEYQDGGKRQYGLFVSLPHYNGRNQVCGHISLTGKPTPPFPYSIDYSASTQTVPANEWCCVAFTYDGTNIRSYFNGTFEARQPEPIEHTKGFTGYPEGLTHSKNPYYFPDGIGSNGSDFTVGAVLLKAGMGNFFKGQIGGLAVFDRALSDAELKKLSTPFLPKK
>NC_015693.1|WP_013921649.1|50966_52295_-|endo-1,4-beta-xylanase
MKKLLIGLIFSGFHTFAQTPRYDSLWKDPAVEKRIADGIEQNRKGDFTLLFPDLKGTAELEIRLVKHDFMFGANIFMLKGFKTEAENRRYEEVFKSLFNLACVPFYWKTLEPEQGKPRFAVNSPAVYRRPPPDVVLDFCEKNGITPKGHTLVWDNTDHAVPTWIPTDTAKIQPLIDARIRELARRYGSKIKTWDVVNEILKDHPHVPMPPEYPLKAFRTAQKYFPADTRLFINEVTTESWQNYHREYTPYKLLIDNLQYRGAKIGGIGLQFHFFSEPLHYSVVAGKAMTPSDLFRNLDIYGRYNLPVHVSEITIPALPAGPEGLENQARLTRNFYRLWFSHPAVEAIIWWNVADGTAVAGEDKWRGGFLDEALKPKPAFDVLDGLINREWKTNLKATVSGKSYFFRGFYGEYVAKITVNGKTTERRFSIHKNQAKAFKVTGL
>NC_015693.1|WP_013921661.1|64364_65267_+|replication-initiation-protein
MQEKSPKTILQDNAITSARYEMSALEKNIIYIMMAQLKKEDRADVIYYVSVRELMDRTGTRNSYEDLKRATETLIGRVLQIKRPNGNLLQVSMISSAEYLHGQGIIEIGLDPKIRPFFFDLKQNFTAFQLHMALSLDSKYAKRIYEMLSQYKDMGMFKIELMELKRRLLLYDEKTGEEQYKNWSDFEKRILLTAKKEINEKTDLTIDYKATKVGRKFSDIIFSIKISKGTQVKIDFRDDSAAVFGRLVNEFRLRKDQAILVVERFSLQEINKALYDIRLKMSGNEVKNLGAYTAKVFGLL
>NC_015693.1|WP_013921662.1|66550_66790_-|hypothetical-protein
MKAQHIYQKNNEITGTVTGGYDYYGRPMNQAFQNCRGRRWYSWQGGTYGYFWINGYWQSIYQVRTWWAFNRYDFQRRVW
>NC_015693.1|WP_013921663.1|67008_68181_+|ATP-binding-protein
MFFRYITQQLLEDLSFFPVVGIIGPRQVGKTTLAKFLQNQLDTPTLYLDLELDTDTRRFDDAETFLKTHADKCIIIDEIQRMPRLFPLLRALIDMDRRPARFILLGSASPDLIRGTSETLAGRIAYTELTPLSLIEVQSTVPMREHWLRGGFPVAVSARSTVHSFRWVSNFIQTFVQRDLQELGYNISTEIFGKLLEMLSHLQGTTLVAADVGRSLGVSSPTVSRYLDLLEGSFMITRLQPYHVNVSKRLVKTPKVYLRDSGILHQLARINNYERLIAHPLVGASWEGYVIEQIRRAAGNDWQYCFYRTQVGAEVDLVLISPGGIKTCIEIKLSNSPMISKGFYESVKDIKPDFQYVIVPEDTGYSKADGTIVGNLSDFLNLHLPKISKM
>NC_015693.1|WP_013921664.1|68428_68749_+|hypothetical-protein
MPNQTLIAQLEEYKRKERFMLDHWEDREVEPSHEFVIEQMRREVIRFTDFLIDRLAANASDLHEQVERYFKEWDNDNFNYDETEFIVETEYEAMRMVGLNIDDLLL
>NC_015693.1|WP_013921665.1|68740_69037_-|hypothetical-protein
MPKLDRSDFKYNAKVFEKTCLWCGTLFFASRSTAKYCCGTCRGYANQAKHSEEAVPYDETEKMISALLSENAYLKGQLQRYILENEELKKNLNRQRSE
>NC_015693.1|WP_013921666.1|69500_70529_-|LLM-class-flavin-dependent-oxidoreductase
MEIGIDSFAAFAGNTDGAEMNNTKAMAQLLERIEQADRSGLDIFGIGEHHRKEFLDSAPALILAAAAARTKRIRLTSAVTVLSAADPVRVFQNFATLDLISGGRAEMVVGRGSFTEAFPLFGLNLQDYDALFSEKLDLLLKIRDNENVTWSGKFRPALNNQSIYPRPQQHPLPVWLGVGGTPQSFIRAGMLGLPLMVAVIGGETHRFRPLVDLYKEAGKRAGYAPEQLKVGLHSIGYVGENTQQAIDDFYPGYAETFTRIGKERGWPPVRREHFDAQRGAKGALLVGGPEEVAEKIFRHSEALGGISRLTFQMDNAGLSHTKLMRAIELIGTRIVPLIKGYR
>NC_015693.1|WP_013921668.1|71198_72242_+|tRNA-2-selenouridine(34)-synthase-MnmH
MIKTITINDFLPLAASVPLIDVRTPAEFDHGHIPGAFNLPLFSNEERVKVGTTYKQIGREAAILLGFDLTGSKWSGFIRRALEIAPDKKIGVHCWRGGMRSGAMAWALSLYGFDVYLIEGGYKSYRKWVVEQFALPSRLWILGGMTGSGKTRILHELRKKGEQIIDLEDLAQHQGSSYGSMNKLVQPTQEQFENNFAEQLKDLDRQRYIWLEDESLTIGRIFIPNPFWNQMKDAILINIIVSLDRRVSALAHEYGELDKSFLVECTERIHKRLGPLQTKQAVAAIREDRMEDFIRLVLVYYDKTYSTGLAKRKPEQLFSIELTTPEANINAEQILAFAHTVSVSEPQ
>NC_015693.1|WP_013921669.1|72251_73292_+|selenide,-water-dikinase-SelD
MDTAAIKLTQYSHGAGCGCKISPAILDKILHSPIAAPIDPRLLVGNDKRDDAAVLDLGNGTALISTTDFFMPIVDDAYDFGRIASANAISDVYAMGGKPVLAIAILGWPIDKLPPEVAQKVLEGSRAVCAEAGITLAGGHSIDCPEPVFGLAVNGLVNIPQLKQNSTATAGCRLYLTKALGVGILSTAQKRGVLLPEDAAVALKSMVTLNRLGEIFGQMEGVKAMTDVTGFGLLGHLSEMCEGSGVSATVEFSKVPVIESLGYYLDQKCFPGGTQRNWNSYGHKVGPLTDEQKYILADPQTSGGLLVAVAQEAAADFEKEMQEKGLSFKAFGWLKELTVGPLIEVV
>NC_015693.1|WP_013921670.1|73495_74473_+|ThuA-domain-containing-protein
MKSKLSLFLLLVLFTIGQTQAQSKKGSKVIKTLIVDGQSNHVQWPKITYMMKQYLEETGVFSVDVKRTYYTWEGADLIDKYKIQGVAPTKALPKAKMDSSFHPDFSKYDLVVCNFGWNAAPWSDETQADFEKFMNNGGGLVVVHAADNSFPMWPAYNRMIGLGGWGDRSEKDGPFVYYDEAGKLVRDMQPGKAGSHGAQKEFLITVRNTKHPITKGMPLKWMHTKDEMYDRLRGPAENMEVLATAFSPKDNRGTDRHEPMLMTIKYGKGRIFHTPLGHVDYSVECVGFITVLQRGAQWAATGKVNIPIPKDFPTETATSQRKFID
>NC_015693.1|WP_013921671.1|74535_75786_+|SGNH/GDSL-hydrolase-family-protein
MHTAKTFRALAVSFFVGFSALAQSDSLARAVEATYRAGLPNFFTKINKGKPVKIAYLGGSITRADNGWRQQTFDAFQKQYPNVRFEEIMAAIGGTGSDFGAYRLEAHVLQHAPDLVFVEFAVNDNGKMAQQVKASMEGIVRQIWRHTPKTDICFVYTFQKVQLPLYEKGRFPVSASAMEAVAEHYQIPTVCMGLPAIRLILEGKMIVQGKVKDFPDTIVFSEDGVHPYPQTGQKVYAETLVKHFNALKTIGKSGKHALKKALIPENLEKATLVPVEKLEKSAGWTIVDSVVTGKPFASLMPPVYASADTSQYLKVSFAGRSLGLLDIMGPSSGQIQVWIDNDPPRFLNRFDEYCTYYRMGYSIISGLPGGKHTAILKVSPVQLDKAAILEKRNNKINNPQSFRKHVFYPGAVLVEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015693_1	1.1\|64194\|29\|NC_015693\|CRISPRCasFinder	64194-64222	29	NC_015693.1	64237-64265	0	1.0

1. spacer 1.1|64194|29|NC_015693|CRISPRCasFinder matches to position: 64237-64265, mismatch: 0, identity: 1.0

tgaactgcgacagaatcctcgcagaactg	CRISPR spacer
tgaactgcgacagaatcctcgcagaactg	Protospacer
*****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015693_1	1.1\|64194\|29\|NC_015693\|CRISPRCasFinder	64194-64222	29	NC_015693	Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence	64194-64222	0	1.0
NC_015693_1	1.1\|64194\|29\|NC_015693\|CRISPRCasFinder	64194-64222	29	NC_015693	Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence	64237-64265	0	1.0
NC_015693_1	1.1\|64194\|29\|NC_015693\|CRISPRCasFinder	64194-64222	29	NC_015693	Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence	64173-64201	2	0.931
NC_015693_1	1.1\|64194\|29\|NC_015693\|CRISPRCasFinder	64194-64222	29	MN693960	Marine virus AFVG_250M896, complete genome	9485-9513	7	0.759

1. spacer 1.1|64194|29|NC_015693|CRISPRCasFinder matches to NC_015693 (Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence) position: , mismatch: 0, identity: 1.0

tgaactgcgacagaatcctcgcagaactg	CRISPR spacer
tgaactgcgacagaatcctcgcagaactg	Protospacer
*****************************

2. spacer 1.1|64194|29|NC_015693|CRISPRCasFinder matches to NC_015693 (Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence) position: , mismatch: 0, identity: 1.0

tgaactgcgacagaatcctcgcagaactg	CRISPR spacer
tgaactgcgacagaatcctcgcagaactg	Protospacer
*****************************

3. spacer 1.1|64194|29|NC_015693|CRISPRCasFinder matches to NC_015693 (Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequence) position: , mismatch: 2, identity: 0.931

tgaactgcgacagaatcctcgcagaactg-	CRISPR spacer
tgaactgcgacagaatcctcgt-gaactgc	Protospacer
*********************. ******

4. spacer 1.1|64194|29|NC_015693|CRISPRCasFinder matches to MN693960 (Marine virus AFVG_250M896, complete genome) position: , mismatch: 7, identity: 0.759

tgaactgcgacagaatcctcgcagaactg	CRISPR spacer
aggtatgcgaccaaatcctcgcagaactc	Protospacer
 *.  ****** .***************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015703

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015694

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_015693

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection