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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_015732 Treponema caldarium DSM 7334, complete sequence 4 crisprs cas3,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL 0 4 3 0

Results visualization

1. NC_015732
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015732_1 1242339-1242425 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015732_2 1870223-1870322 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015732_3 2125870-2129407 TypeI NA
52 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015732_4 2131097-2133630 TypeI NA
37 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_015732_4 4.34|2133359|34|NC_015732|CRISPRCasFinder,CRT,PILER-CR 2133359-2133392 34 MK867354 Synechococcus phage S-SCSM1, complete genome 184521-184554 7 0.794
NC_015732_3 3.1|2125904|34|NC_015732|PILER-CR 2125904-2125937 34 NZ_CP026273 Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence 149418-149451 9 0.735
NC_015732_3 3.53|2125903|34|NC_015732|CRISPRCasFinder,CRT 2125903-2125936 34 NZ_CP026273 Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence 149418-149451 9 0.735
NC_015732_4 4.15|2132077|35|NC_015732|CRISPRCasFinder,CRT,PILER-CR 2132077-2132111 35 NZ_CP049158 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence 1003632-1003666 10 0.714
NC_015732_4 4.15|2132077|35|NC_015732|CRISPRCasFinder,CRT,PILER-CR 2132077-2132111 35 NZ_CP049318 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence 1008312-1008346 10 0.714
NC_015732_4 4.34|2133359|34|NC_015732|CRISPRCasFinder,CRT,PILER-CR 2133359-2133392 34 NC_025119 Acinetobacter sp. M131 plasmid pM131-8, complete sequence 981-1014 10 0.706
NC_015732_4 4.34|2133359|34|NC_015732|CRISPRCasFinder,CRT,PILER-CR 2133359-2133392 34 CP013001 Bacillus thuringiensis strain XL6 plasmid, complete sequence 264693-264726 11 0.676
NC_015732_4 4.34|2133359|34|NC_015732|CRISPRCasFinder,CRT,PILER-CR 2133359-2133392 34 NC_011775 Bacillus cereus G9842 plasmid pG9842_209, complete sequence 140737-140770 12 0.647

1. spacer 4.34|2133359|34|NC_015732|CRISPRCasFinder,CRT,PILER-CR matches to MK867354 (Synechococcus phage S-SCSM1, complete genome) position: , mismatch: 7, identity: 0.794

cgatttagatttt-tagcattagttgaaatccaaa	CRISPR spacer
-gcttcaacttttatagcattagttgaactccaat	Protospacer
 * **.*. **** ************** ***** 

2. spacer 3.1|2125904|34|NC_015732|PILER-CR matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 9, identity: 0.735

tcaatcaatcattgatagattgattgattgagaa	CRISPR spacer
tgtagatgtcattgatagattgagtgattgtgat	Protospacer
*  *   .*************** ****** ** 

3. spacer 3.53|2125903|34|NC_015732|CRISPRCasFinder,CRT matches to NZ_CP026273 (Klebsiella oxytoca strain KONIH4 plasmid pKOX-ea2b, complete sequence) position: , mismatch: 9, identity: 0.735

tcaatcaatcattgatagattgattgattgagaa	CRISPR spacer
tgtagatgtcattgatagattgagtgattgtgat	Protospacer
*  *   .*************** ****** ** 

4. spacer 4.15|2132077|35|NC_015732|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 10, identity: 0.714

ctgctgggcgccaggctcagcccaagatacagcca	CRISPR spacer
taaacgagcggcaggctcagcccgagatacagcag	Protospacer
. . .*.*** ************.********* .

5. spacer 4.15|2132077|35|NC_015732|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 10, identity: 0.714

ctgctgggcgccaggctcagcccaagatacagcca	CRISPR spacer
taaacgagcggcaggctcagcccgagatacagcag	Protospacer
. . .*.*** ************.********* .

6. spacer 4.34|2133359|34|NC_015732|CRISPRCasFinder,CRT,PILER-CR matches to NC_025119 (Acinetobacter sp. M131 plasmid pM131-8, complete sequence) position: , mismatch: 10, identity: 0.706

cgatttagatttttagcattagttgaaatccaaa	CRISPR spacer
tctgtcattgttttagcattagctgaaatacaaa	Protospacer
.   *.*   ************.****** ****

7. spacer 4.34|2133359|34|NC_015732|CRISPRCasFinder,CRT,PILER-CR matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 11, identity: 0.676

cgatttagatttttagcattagttgaaatccaaa	CRISPR spacer
acttttacatttttagcattagatgaactatgtt	Protospacer
   **** ************** **** * ..  

8. spacer 4.34|2133359|34|NC_015732|CRISPRCasFinder,CRT,PILER-CR matches to NC_011775 (Bacillus cereus G9842 plasmid pG9842_209, complete sequence) position: , mismatch: 12, identity: 0.647

cgatttagatttttagcattagttgaaatccaaa	CRISPR spacer
acttttacatttttagcattagatgaaccatgtt	Protospacer
   **** ************** **** . ..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 924069 : 932063 8 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 2443444 : 2506270 56 uncultured_Mediterranean_phage(16.67%) transposase NA
DBSCAN-SWA_3 2711486 : 2719405 6 Synechococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage