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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_020517 Bifidobacterium breve UCC2003, complete sequence 4 crisprs DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5 0 10 2 0

Results visualization

1. NC_020517
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020517_1 149237-149573 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020517_2 1739051-1739358 TypeI I-C
4 spacers
cas2,cas1,cas4,cas7,cas8c,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020517_3 1744412-1747278 TypeI I-C
42 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_020517_4 2139336-2139482 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_020517_3 3.21|1745797|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1745797-1745831 35 NZ_KM406416 Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence 17872-17906 2 0.943
NC_020517_3 3.16|1745460|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1745460-1745492 33 NZ_CP045304 Legionella longbeachae strain B1445CHC plasmid pB1445CHC_73K, complete sequence 17722-17754 5 0.848
NC_020517_3 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744581-1744613 33 NZ_CP030127 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence 806338-806370 7 0.788
NC_020517_3 3.2|1744514|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744514-1744547 34 CP042595 Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence 66115-66148 8 0.765
NC_020517_3 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744581-1744613 33 NZ_CP017943 Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence 37577-37609 8 0.758
NC_020517_3 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744581-1744613 33 NZ_CP018464 Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence 69346-69378 8 0.758
NC_020517_3 3.8|1744920|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744920-1744953 34 JF412295 EBPR podovirus 2, partial sequence 940-973 8 0.765
NC_020517_3 3.21|1745797|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1745797-1745831 35 NZ_LR134468 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence 67952-67986 8 0.771
NC_020517_3 3.27|1746204|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1746204-1746238 35 NC_012520 Rhodococcus opacus B4 plasmid pROB01, complete sequence 310923-310957 8 0.771
NC_020517_3 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744581-1744613 33 NZ_CP023408 Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence 212302-212334 9 0.727
NC_020517_3 3.33|1746605|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1746605-1746638 34 NC_010631 Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence 306995-307028 9 0.735
NC_020517_3 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744581-1744613 33 NZ_LN832562 Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence 560304-560336 10 0.697
NC_020517_3 3.6|1744785|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744785-1744819 35 NZ_CP024424 Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence 175760-175794 10 0.714
NC_020517_3 3.6|1744785|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744785-1744819 35 NZ_CP020440 Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence 57811-57845 10 0.714
NC_020517_3 3.6|1744785|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744785-1744819 35 NZ_CP044082 Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence 264864-264898 10 0.714
NC_020517_3 3.6|1744785|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744785-1744819 35 NZ_CP031080 Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence 156489-156523 10 0.714
NC_020517_3 3.15|1745393|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1745393-1745426 34 NZ_CP040722 Rhodococcus pyridinivorans strain YF3 plasmid unnamed3, complete sequence 84330-84363 10 0.706
NC_020517_3 3.15|1745393|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1745393-1745426 34 NZ_CP016821 Rhodococcus sp. p52 plasmid pDF01, complete sequence 44694-44727 10 0.706
NC_020517_3 3.20|1745730|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1745730-1745763 34 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 309269-309302 10 0.706
NC_020517_3 3.8|1744920|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT 1744920-1744953 34 NZ_CP022566 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence 95198-95231 11 0.676

1. spacer 3.21|1745797|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM406416 (Bifidobacterium breve strain JCM 7017 plasmid megaplasmid pMP7017, complete sequence) position: , mismatch: 2, identity: 0.943

tcggtgaccgtgtacgtgccgtagccgaggccctt	CRISPR spacer
tcgacgaccgtgtacgtgccgtagccgaggccctt	Protospacer
***..******************************

2. spacer 3.16|1745460|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045304 (Legionella longbeachae strain B1445CHC plasmid pB1445CHC_73K, complete sequence) position: , mismatch: 5, identity: 0.848

cattagtga-gcctggtctttatcgtctggtgat	CRISPR spacer
-attgatgaggcctggtctttattctctggtgat	Protospacer
 ***..*** *************. *********

3. spacer 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

gtattccag--cgtgccggccgtgtcgggcacggt	CRISPR spacer
--cgtcgagatcgcgccggacgtgtcgggcacggt	Protospacer
    ** **  **.***** ***************

4. spacer 3.2|1744514|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 8, identity: 0.765

cctgctccgtcccggcccgctcccactccacgct	CRISPR spacer
ccggctccgccccggcccgctcccgggccgcgtc	Protospacer
** ******.**************.  **.**..

5. spacer 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017943 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

gtattccagcgtgccggccgtgtcgggcacggt	CRISPR spacer
ctgcagcagcgtgccgaccgggtcgggcacgat	Protospacer
 *..  **********.*** **********.*

6. spacer 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018464 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.1, complete sequence) position: , mismatch: 8, identity: 0.758

gtattccagcgtgccggccgtgtcgggcacggt	CRISPR spacer
ggacacatgcgagccggtcgtgtcgggcacggc	Protospacer
* *. *  *** *****.**************.

7. spacer 3.8|1744920|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to JF412295 (EBPR podovirus 2, partial sequence) position: , mismatch: 8, identity: 0.765

ggcgtggcggcgtgtccgctggcgtcgtcggatt	CRISPR spacer
gctgcgacggcgtgtccgctggcgtcatcgggcg	Protospacer
* .*.*.*******************.****.. 

8. spacer 3.21|1745797|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 8, identity: 0.771

tcggtgaccgtgtacgtgccgtagccgaggccctt	CRISPR spacer
tcggtgacggtgtacgtgccgtggccctcggactc	Protospacer
******** *************.***   *  **.

9. spacer 3.27|1746204|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 8, identity: 0.771

cgaccgtcacagacctgttcgagat-cggcagtcag	CRISPR spacer
cgagcgtcagagacctgttcgagatgcggctcctc-	Protospacer
*** ***** *************** ****  ..  

10. spacer 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.727

gtattccagcgtgccggccgtgtcgggcacggt	CRISPR spacer
gtcccccagcgggacggccgtgtcgggcagcag	Protospacer
** ..****** * ***************  . 

11. spacer 3.33|1746605|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 9, identity: 0.735

tttgctcggcgtattcatcgtctcgcacatagtc	CRISPR spacer
tatcctctgcgtatacatcgtctcgcactgctac	Protospacer
* * *** ****** *************     *

12. spacer 3.3|1744581|33|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 10, identity: 0.697

gtattccagcgtgccggccgtgtcgggcacggt	CRISPR spacer
atgggccagcgtgccggccgcctcgggcagttc	Protospacer
.*.  ***************. *******   .

13. spacer 3.6|1744785|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 10, identity: 0.714

ttcatgtccgcgcccgccttgcgcatggtggacac	CRISPR spacer
gcgaaatcctcgcccgccgtgcgcatggtggccga	Protospacer
 . * .*** ******** ************ *. 

14. spacer 3.6|1744785|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

ttcatgtccgcgcccgccttgcgcatggtggacac	CRISPR spacer
gcgaaatcctcgcccgccgtgcgcatggtggccga	Protospacer
 . * .*** ******** ************ *. 

15. spacer 3.6|1744785|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.714

ttcatgtccgcgcccgccttgcgcatggtggacac	CRISPR spacer
gcgaaatcctcgcccgccgtgcgcatggtggccga	Protospacer
 . * .*** ******** ************ *. 

16. spacer 3.6|1744785|35|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 10, identity: 0.714

ttcatgtccgcgcccgccttgcgcatggtggacac	CRISPR spacer
gcgaaatcctcgcccgccgtgcgcatggtggccga	Protospacer
 . * .*** ******** ************ *. 

17. spacer 3.15|1745393|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040722 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

cgcagaccctcggcgacttctacgtcaagtccct	CRISPR spacer
gccagaccctcggccagttctacgtcaccgtcgg	Protospacer
  ************ * **********   .*  

18. spacer 3.15|1745393|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016821 (Rhodococcus sp. p52 plasmid pDF01, complete sequence) position: , mismatch: 10, identity: 0.706

cgcagaccctcggcgacttctacgtcaagtccct	CRISPR spacer
gccagaccctcggccagttctacgtcaccgtcgg	Protospacer
  ************ * **********   .*  

19. spacer 3.20|1745730|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cggcgctgtgttcctcatgcgtggccttgttgtt	CRISPR spacer
gggcgctgtgttcgtcatgcggggcaccgtaaaa	Protospacer
 ************ ******* *** ..** .  

20. spacer 3.8|1744920|34|NC_020517|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 11, identity: 0.676

ggcgtggcggcgtgtccgctggcgtcgtcggatt	CRISPR spacer
tcgacggcggcgactccgctggcgtcgtcgtcgg	Protospacer
   ..*******  ****************    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 364579 : 469531 91 Mycobacterium_phage(20.0%) holin,protease,capsid,portal,tRNA,integrase,transposase attL 383361:383378|attR 450707:450722
DBSCAN-SWA_2 1864022 : 1928067 55 Escherichia_phage(12.5%) protease,integrase,tRNA,transposase attL 1913095:1913111|attR 1937334:1937350
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage