CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017541	Klebsiella pneumoniae KCTC 2242 plasmid pKCTC2242, complete sequence	0 crisprs	NA	0	0	1	0
NC_017540	Klebsiella pneumoniae KCTC 2242, complete sequence	3 crisprs	cas3,DEDDh,WYL,DinG,csa3,RT	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017540_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017540_1

576721-576806

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017540_1

>merge|NC_017540|1|576721-576806|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCTGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NC_017540|1|1|576721-576806|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCTGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017540.1\|WP_004177424.1\|586193_587696_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NC_017540.1\|WP_002888337.1\|574265_574964_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NC_017540.1\|WP_002888348.1\|579061_579721_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NC_017540.1\|WP_002888321.1\|566426_567275_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	unknown	unknown	gnl\|CDD\|273208
NC_017540.1\|WP_004222645.1\|578447_578987_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NC_017540.1\|WP_002888345.1\|576903_578268_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NC_017540.1\|WP_004147026.1\|570813_573162_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NC_017540.1\|WP_004177423.1\|587706_589416_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NC_017540.1\|WP_002888327.1\|568477_569467_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NC_017540.1\|WP_004222643.1\|574953_576579_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NC_017540.1\|WP_014599039.1\|579733_582640_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NC_017540.1\|WP_004182901.1\|567279_567657_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NC_017540.1\|WP_004145972.1\|589753_590599_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NC_017540.1\|WP_002888329.1\|569472_570759_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NC_017540.1\|WP_002888332.1\|573405_574233_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NC_017540.1\|WP_002888320.1\|565695_566175_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NC_017540.1\|WP_002888324.1\|567659_568481_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NC_017540.1\|WP_014599040.1\|582827_585185_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NC_017540.1\|WP_002888373.1\|590727_591495_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NC_017540.1\|WP_002888353.1\|585360_586056_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181

Protein	Function_ID	Function_description	E-value
NC_017540.1\|WP_004177424.1\|586193_587696_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NC_017540.1\|WP_002888337.1\|574265_574964_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NC_017540.1\|WP_002888348.1\|579061_579721_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NC_017540.1\|WP_002888321.1\|566426_567275_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NC_017540.1\|WP_004222645.1\|578447_578987_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	1.64069e-84
NC_017540.1\|WP_002888345.1\|576903_578268_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NC_017540.1\|WP_004147026.1\|570813_573162_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NC_017540.1\|WP_004177423.1\|587706_589416_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NC_017540.1\|WP_002888327.1\|568477_569467_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NC_017540.1\|WP_004222643.1\|574953_576579_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	1.7543e-172
NC_017540.1\|WP_014599039.1\|579733_582640_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NC_017540.1\|WP_004182901.1\|567279_567657_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	4.9056e-73
NC_017540.1\|WP_004145972.1\|589753_590599_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NC_017540.1\|WP_002888329.1\|569472_570759_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NC_017540.1\|WP_002888332.1\|573405_574233_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NC_017540.1\|WP_002888320.1\|565695_566175_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NC_017540.1\|WP_002888324.1\|567659_568481_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NC_017540.1\|WP_014599040.1\|582827_585185_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NC_017540.1\|WP_002888373.1\|590727_591495_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NC_017540.1\|WP_002888353.1\|585360_586056_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0

>NC_017540.1|WP_004222643.1|574953_576579_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSQRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NC_017540.1|WP_002888337.1|574265_574964_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NC_017540.1|WP_002888332.1|573405_574233_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NC_017540.1|WP_004147026.1|570813_573162_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NC_017540.1|WP_002888329.1|569472_570759_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NC_017540.1|WP_002888327.1|568477_569467_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NC_017540.1|WP_002888324.1|567659_568481_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NC_017540.1|WP_004182901.1|567279_567657_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPYIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NC_017540.1|WP_002888321.1|566426_567275_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NC_017540.1|WP_002888320.1|565695_566175_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NC_017540.1|WP_002888345.1|576903_578268_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NC_017540.1|WP_004222645.1|578447_578987_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIEALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQIHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NC_017540.1|WP_002888348.1|579061_579721_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NC_017540.1|WP_014599039.1|579733_582640_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYFRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATTLQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NC_017540.1|WP_014599040.1|582827_585185_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFCNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NC_017540.1|WP_002888353.1|585360_586056_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NC_017540.1|WP_004177424.1|586193_587696_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NC_017540.1|WP_004177423.1|587706_589416_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>NC_017540.1|WP_004145972.1|589753_590599_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NC_017540.1|WP_002888373.1|590727_591495_+|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR

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Crispr_ID: NC_017540_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017540_2

1439791-1439868

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCACCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017540_2

>merge|NC_017540|2|1439791-1439868|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NC_017540|2|2|1439791-1439868|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017540.1\|WP_004183475.1\|1443109_1444267_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NC_017540.1\|WP_004152853.1\|1445662_1446385_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NC_017540.1\|WP_004147672.1\|1437865_1439248_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NC_017540.1\|WP_002895358.1\|1433687_1434413_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NC_017540.1\|WP_004223766.1\|1447096_1449118_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NC_017540.1\|WP_002895652.1\|1446472_1446685_-\|hypothetical-protein	unknown	unknown	unknown
NC_017540.1\|WP_004223758.1\|1440569_1441859_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NC_017540.1\|WP_004147680.1\|1449366_1450464_-\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NC_017540.1\|WP_004223747.1\|1432669_1433626_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NC_017540.1\|WP_014599103.1\|1431353_1432673_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NC_017540.1\|WP_004142100.1\|1444250_1445006_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NC_017540.1\|WP_004183465.1\|1426472_1426904_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|185353
NC_017540.1\|WP_004223753.1\|1436240_1437767_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NC_017540.1\|WP_004223755.1\|1440022_1440499_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NC_017540.1\|WP_002895580.1\|1442072_1443113_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NC_017540.1\|WP_004223727.1\|1424853_1425939_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_017540.1\|WP_160818918.1\|1435305_1436244_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NC_017540.1\|WP_014599104.1\|1444998_1445721_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NC_017540.1\|WP_004223731.1\|1426955_1429643_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NC_017540.1\|WP_004142122.1\|1429915_1431199_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709

Protein	Function_ID	Function_description	E-value
NC_017540.1\|WP_004183475.1\|1443109_1444267_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NC_017540.1\|WP_004152853.1\|1445662_1446385_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NC_017540.1\|WP_004147672.1\|1437865_1439248_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NC_017540.1\|WP_002895358.1\|1433687_1434413_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NC_017540.1\|WP_004223766.1\|1447096_1449118_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_017540.1\|WP_004223758.1\|1440569_1441859_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NC_017540.1\|WP_004147680.1\|1449366_1450464_-\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NC_017540.1\|WP_004223747.1\|1432669_1433626_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	1.41458e-178
NC_017540.1\|WP_014599103.1\|1431353_1432673_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NC_017540.1\|WP_004142100.1\|1444250_1445006_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160
NC_017540.1\|WP_004183465.1\|1426472_1426904_+\|universal-stress-protein	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	1.69931e-44
NC_017540.1\|WP_004223753.1\|1436240_1437767_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NC_017540.1\|WP_004223755.1\|1440022_1440499_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	2.63866e-116
NC_017540.1\|WP_002895580.1\|1442072_1443113_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NC_017540.1\|WP_004223727.1\|1424853_1425939_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.18539e-66
NC_017540.1\|WP_160818918.1\|1435305_1436244_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NC_017540.1\|WP_014599104.1\|1444998_1445721_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	3.42851e-105
NC_017540.1\|WP_004223731.1\|1426955_1429643_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_017540.1\|WP_004142122.1\|1429915_1431199_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0

>NC_017540.1|WP_004147672.1|1437865_1439248_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NC_017540.1|WP_004223753.1|1436240_1437767_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLTRLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NC_017540.1|WP_160818918.1|1435305_1436244_+|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMGDHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NC_017540.1|WP_002895358.1|1433687_1434413_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NC_017540.1|WP_004223747.1|1432669_1433626_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARVAARVAWQIAHWWR
>NC_017540.1|WP_014599103.1|1431353_1432673_+|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDANGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQTLGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NC_017540.1|WP_004142122.1|1429915_1431199_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NC_017540.1|WP_004223731.1|1426955_1429643_+|cation-transporting-P-type-ATPase
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVVIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGDTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVETLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEPVGKIHAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLVLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>NC_017540.1|WP_004183465.1|1426472_1426904_+|universal-stress-protein
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALADELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR
>NC_017540.1|WP_004223727.1|1424853_1425939_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MNRYFSLIPVVIIFTTACDQKAPTVESAPRMVKVAQVTAVGNTQQRTFPARIESGDSTELSFKRGGQVESLDIRQGASVAQGQTLARLNAREAQQRVNERQTAATLAQRQFDRFQTLAGRQAISQAEMDVQRANRDAANAALKIAREELAQMSLIAPFSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDIRNTAYRPVVRINPLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPRPDDFPAVGGVSGTVTVNLGNLPASAGRETLIVPAEAVFNPDNRPKNEPVVWVVKGDNAHRYLEERKVAVGEVTSQGVAITDGLRAGEQVVAAGVSELHAGQPVRVWTRERGL
>NC_017540.1|WP_004223755.1|1440022_1440499_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPVGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NC_017540.1|WP_004223758.1|1440569_1441859_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMATLQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NC_017540.1|WP_002895580.1|1442072_1443113_+|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NC_017540.1|WP_004183475.1|1443109_1444267_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHTEDINRLLEVLHGHSE
>NC_017540.1|WP_004142100.1|1444250_1445006_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NC_017540.1|WP_014599104.1|1444998_1445721_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSNGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NC_017540.1|WP_004152853.1|1445662_1446385_-|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NC_017540.1|WP_002895652.1|1446472_1446685_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NC_017540.1|WP_004223766.1|1447096_1449118_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSVVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NC_017540.1|WP_004147680.1|1449366_1450464_-|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIRVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH

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Crispr_ID: NC_017540_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017540_3

4378512-4378798

Orphan

Consensus_repeat	Method
CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCTTT	PILER-CR

2 spacers

The CRISPR arrays of NC_017540_3

>merge|NC_017540|3|4378512-4378798|PILER-CR
CTGACCGATAAGCCGCCTTCTTTTGGTATAGCGTCGTGGATAGTCATTCATCCTCGTCACGGGTTCAGATAGCAAAAACCCCGCCGAAGCGGGGTTTTGACATAAAAAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCTTTCTCCGCTATTCGAATAGCAAAAACCCCGCCGTAGCGGGGCTTTGACATAAAAAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCTTT

>NC_017540|3|1|4378512-4378798|PILER-CR
CTGACCGATAAGCCGCCTTCTTTTGGTATAGCGTCGTGGATAGTCATTCATCCTCG	TCACGGGTTCAGATAGCAAAAACCCCGCCGAAGCGGGGTTTTGACATAAAAAGGTGAAA
CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCTTT	CTCCGCTATTCGAATAGCAAAAACCCCGCCGTAGCGGGGCTTTGACATAAAAAGGTGAAA
CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017540.1\|WP_004900840.1\|4376355_4377057_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NC_017540.1\|WP_002917922.1\|4373831_4374818_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NC_017540.1\|WP_002918211.1\|4389089_4389680_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NC_017540.1\|WP_004900844.1\|4379264_4380410_-\|glycerate-2-kinase	unknown	unknown	gnl\|CDD\|182392
NC_017540.1\|WP_004149911.1\|4382188_4383520_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NC_017540.1\|WP_002918214.1\|4389689_4390265_+\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NC_017540.1\|WP_004900854.1\|4386611_4388720_+\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
NC_017540.1\|WP_004900851.1\|4385684_4386548_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NC_017540.1\|WP_004900848.1\|4381391_4382162_-\|2-dehydro-3-deoxyglucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
NC_017540.1\|WP_002917952.1\|4380474_4381365_-\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
NC_017540.1\|WP_002917920.1\|4373358_4373751_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_017540.1\|WP_004144862.1\|4372716_4373013_+\|YqjK-like-family-protein	unknown	unknown	gnl\|CDD\|372871
NC_017540.1\|WP_002917923.1\|4374944_4375313_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NC_017540.1\|WP_002917960.1\|4383912_4385484_+\|galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491
NC_017540.1\|WP_004144865.1\|4375354_4376251_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NC_017540.1\|WP_004150939.1\|4378040_4378505_+\|OB-fold-putative-lipoprotein	unknown	unknown	gnl\|CDD\|378982
NC_017540.1\|WP_004900842.1\|4377322_4377733_-\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|226203
NC_017540.1\|WP_002917926.1\|4377081_4377249_+\|hypothetical-protein	unknown	unknown	unknown
NC_017540.1\|WP_002918206.1\|4388677_4389064_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NC_017540.1\|WP_002917917.1\|4372321_4372720_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|227681

Protein	Function_ID	Function_description	E-value
NC_017540.1\|WP_004900840.1\|4376355_4377057_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.11268e-63
NC_017540.1\|WP_002917922.1\|4373831_4374818_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NC_017540.1\|WP_002918211.1\|4389089_4389680_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	2.29713e-142
NC_017540.1\|WP_004900844.1\|4379264_4380410_-\|glycerate-2-kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
NC_017540.1\|WP_002918214.1\|4389689_4390265_+\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.07708e-116
NC_017540.1\|WP_004900854.1\|4386611_4388720_+\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	1.05218e-120
NC_017540.1\|WP_004900851.1\|4385684_4386548_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NC_017540.1\|WP_004900848.1\|4381391_4382162_-\|2-dehydro-3-deoxyglucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
NC_017540.1\|WP_002917952.1\|4380474_4381365_-\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
NC_017540.1\|WP_002917920.1\|4373358_4373751_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.0965e-24
NC_017540.1\|WP_004144862.1\|4372716_4373013_+\|YqjK-like-family-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	2.90645e-22
NC_017540.1\|WP_002917923.1\|4374944_4375313_+\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.36085e-39
NC_017540.1\|WP_002917960.1\|4383912_4385484_+\|galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0
NC_017540.1\|WP_004144865.1\|4375354_4376251_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.52e-52
NC_017540.1\|WP_004150939.1\|4378040_4378505_+\|OB-fold-putative-lipoprotein	gnl\|CDD\|378982	pfam12869, tRNA_anti-like, tRNA_anti-like. This is a family of bacterial, archeael and viral proteins that is related to the tRNA_anti family pfam01336. The major characteristic of families like tRNA_anti is their OB-fold, and many of them bind DNA.	3.01553e-44
NC_017540.1\|WP_004900842.1\|4377322_4377733_-\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|226203	COG3678, CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism].	1.56267e-18
NC_017540.1\|WP_004149911.1\|4382188_4383520_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.0154e-131
NC_017540.1\|WP_002918206.1\|4388677_4389064_+\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	6.84829e-53
NC_017540.1\|WP_002917917.1\|4372321_4372720_+\|phage-holin-family-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	1.16468e-44

>NC_017540.1|WP_004150939.1|4378040_4378505_+|OB-fold-putative-lipoprotein
MLLRFRVLPLVFVISLLSGCGLASKAFYSAGDKLFQPGDDAVASMQTYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQDSTIPTLQNPKVVK
>NC_017540.1|WP_004900842.1|4377322_4377733_-|Spy/CpxP-family-protein-refolding-chaperone
MKLITRIAFATLLTTGFSITAQAADVKAAPAPAQDPIVQHLKLTNDQVAKIKSLHQQLKSNVQQISQQEIKDGALINVIDSGKWDEKAVNDQLAAFSKIDQQVRYYRVKYYFEVNKVLTPEQRTQVKKDLADALSE
>NC_017540.1|WP_002917926.1|4377081_4377249_+|hypothetical-protein
MSKKKNRKKASPTPLAPVQPQVAGAASFGYDEMLSELEAIVAEAEIRLRDEESLA
>NC_017540.1|WP_004900840.1|4376355_4377057_+|pirin-family-protein
MITTRTAKQCGQADFGWLQARYTFSFGHYFDPKLLGFASLRVLNQEVLAPGASFQARTYPKVDILNLILEGEAEYRDSDGNHVQAKAGEALLIATQPGVSYSEHNLSKEQSLTRMQLWLDACPQRENPLQQKINVADATLQLLASPEGGDNSLQLRQQAWVYHIAMEKGEQINVQLHGPRAYLQSIHGSVHAVAQEQQKQALTCGDGAFIRDEANITLVADTPLRALLIDLPV
>NC_017540.1|WP_004144865.1|4375354_4376251_-|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALSRGWETHLTIVTEALVPTPDLFPLIEKLATKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHFRSSSEINSRKLYSVLSVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPLVEKDIAEGRLRVVSPEYTNEIDIIMAWRRDSMGEAKSWCLREIPKLFAGR
>NC_017540.1|WP_002917923.1|4374944_4375313_+|DUF805-domain-containing-protein
MDWYLKVLKNYIGFGGRARRKEYWMFILVNLILTGVLSIIDKMLGWQRAGGEGILTTIYGVLVFLPWWAVQFRRLHDTDRSAWWLLLLLIPVIGWLVILIFNCQRGTEGNNRFGPDPKPFSY
>NC_017540.1|WP_002917922.1|4373831_4374818_+|glutathione-S-transferase-family-protein
MGQLVDGVWQDTWYDTKSTGGRFKRSVSAFRNWLTADGAAGPSGEGGFAAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFLPVSVVNPLMLENGWTFDDSFPEATGDTLYQHDFLYQLYLHADPHYTGRVTVPVLWDKKQQTIVSNESAEIIRMFNTAFDGLGARAGDYYPPALREQIDELNGWIYDNVNNGVYKAGFATSQQAYDEAVDAVFTSLERLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKRRISDYLNLYGFLRDIYQMPGIAETVSFPHIRHHYYRSHKTINPTGIISIGPQQDLNEPHGRDQRFR
>NC_017540.1|WP_002917920.1|4373358_4373751_+|DoxX-family-protein
MKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGALLPLTILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTIAGGYLLLAITGPGAFSIDRVLNKKW
>NC_017540.1|WP_004144862.1|4372716_4373013_+|YqjK-like-family-protein
MNGRQERERQKAQLLRQIQQQRLELSACRRHWHEATAPLDRGWHTLLSLRSWLMVGSGLMAVWSVRHPHFLMRWTKRGLGLWSTWRLVRGILRQSAVR
>NC_017540.1|WP_002917917.1|4372321_4372720_+|phage-holin-family-protein
MANTQHTQGPGQRVFSIGQRIVTLLVEMVETRLRLVVVELEEEKANLFQLLIMTGLTLLFAAFGLMSLLVLVIWAVDAQYRLHVMIATTVVLLLAAAIVGILTLRKARRSTLLRLTRKELENDRALLEEDKS
>NC_017540.1|WP_004900844.1|4379264_4380410_-|glycerate-2-kinase
MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSLPVADGGEGTVEAMIAATQGKEHFAWVTGPLGERVKACWGMSGDGVTAFIEMAAASGLGLVPPDKRNPLITTSRGTGELILQALEHGAERIIIGIGGSATNDGGAGMMQALGARLCDAEGQEIGHGGGSLSRLSRIDLSAIDPRLRDRMIHVACDVTNPLVGERGASRIFGPQKGATEAMIVELDRNLAHYADVIKASLQVDVKSIPGAGAAGGMGAALMAFLNAELRSGIEIVTEALKLEEQIHDCSLVVTGEGRLDSQSVHGKVPVGVARVAKKYRKPVIGIAGSLTHDVGVVHQHGIDAVFSVLTSVSTLEEAFRGAFDNIYRASRNIAATLQVGMTTEG
>NC_017540.1|WP_002917952.1|4380474_4381365_-|2-hydroxy-3-oxopropionate-reductase
MTIKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETATTPKAIAEQCEVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEVTR
>NC_017540.1|WP_004900848.1|4381391_4382162_-|2-dehydro-3-deoxyglucarate-aldolase
MDNAIFPNKFKAALAAHQVQIGCWCALANPISTEVLGLAGFDWLVLDAEHAPNDVTTLIPQLMALKGSSSAQVVRVPTNEPIIIKRMLDIGFYNFLVPFVETAEQAAQAVASTRYPPEGIRGVSVSHRGNMFGTVPDYFAQSNKNISILVQIESQTGVDNVEAIASTEGVDGVFVGPSDLAAALGHLGNAAHPEVQRAIQYIFASAKKHGKPSGILAPVEADARRYLEWGATFVAVGSDLGVFRSATQKLADAFKK
>NC_017540.1|WP_004149911.1|4382188_4383520_-|MFS-transporter
MILDSTLDEKKGIPTRYLILLMIFVVTAVNYGDRATLSIAGTEVAKELGLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYSYSLFFWSLFTFLQGFIDVFPLAWAGVSMFFMRFMLGFSEAPSFPANARIVAAWFPAKERGTASAIFNAAQYFSLALFSPLLGWLTFALGWEHVFTVMGIIGFVLTIIWVKFVHNPTDHPRMSAAELKYISEGGAVVDMDHKKEATPAAGPKMDYIRQLLTNRMMLGVFFGQYFLNTITWFFLTWFPIYLVQDKGMSILKVGFVASIPALFGFAGGVLGGLFSDYLIGRGCTLTFARKLPIVLGMLLASSIILCNYTASTPLVITLMALAFFGKGFGALGWPVISDVAPKEIVGLCGGVFNVFGNVASIATPLVIGYIVSELHSFNGALIFVGGSALMMMVCYLFVVGDIKRMELQK
>NC_017540.1|WP_002917960.1|4383912_4385484_+|galactarate-dehydratase
MADIAIRQQSPTAFYIKVDPTDNVAIIVNDRGLTAGTRFPDGLTLVEHIPQGHKVALVDIPAHGEIIRYGEVIGYAVRDIPQGSWIDESLVELPTAPPLNTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPNYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKLQPERLLQGTEDVKSIPVDSASIVSLQDEKHVGFKSMVDDILQVAERHLAKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAINEEVGKRLLEEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGRKLFEFILDVASGRKKTFSDQWGLHNQLAVFNPAPVT
>NC_017540.1|WP_004900851.1|4385684_4386548_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKQDESADNSQGQLYIVPTPIGNLSDITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKAETLLAKLKEGQNIALVSDAGTPLINDPGYHLVRTCREANIRVVPLPGPCAAIAALSAAGLPSDRFCYEGFLPAKSKGRRDTLKALEEEPRTLIFYESTHRLVESLEDICAVLGESRYVVLARELTKTWESIHGAPIGELVAWVKEDENRRKGEMVLIVEGFKAQEEALPAAALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQGE
>NC_017540.1|WP_004900854.1|4386611_4388720_+|penicillin-binding-protein-activator
MVPSTFLRSKPARCLPVLLATLIFAGCGTHTQDQSAAFMQGTSQANSSFYLQQMQQSTNDSKTNWQLLAIRALLQEGKKQQAIDLFNQLPANLNSTQAREQSLLAVEVKLAQNDYQAARNLLAKIDPTNLEQPQQARYWQAQIDASQGKPSLTLLRALIAQQPLLSDAKQRQKNIDATWQALTSMPQDQANALVINADENILQGWLDLQRMWFDNRNDPTLLKAGVKDWQTRYPQNPGAKMLPTALVNMQNYKPASINKIALFLPLNGQASIFGRTIQQGFEAAKNGAPSVTGSAVPAQVAQAANVSGNDDVVSPSQAEISDLTAAGSRADPVQAPTQDQAAPAAEPAAQAPATSATPQTTASPATQPVTAPAAQPQPVVATAANPSAELKIYDTTSQPISQLLAQAQQDGATLVVGPLLKENVEEVIKSNTPLNVLALNQPEKVESRANLCYFALSPEDEARDAARHIHQQGKQTPLLLVPRGALGDRVVSAFADEWLKLGGASVLQQRFGSTAELRAGVNGGGGIALSGTPVSTLPSAQNSILGSADEMPVSSGGSVDAAYILATPEQIAYIKPMIAMRNSSQSNVTLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGSNPSLMQQALSAVRNDYSLARLYAMGADAWSLANHFTQMRQTPGFELNGNTGDLTANQDCVINRKLSWLKYQQGKIVPAS
>NC_017540.1|WP_002918206.1|4388677_4389064_+|YraN-family-protein
MAQVPAGKNRSGQLSKQTGDAWENQARRWLEGQGLRFIAANARERGGEIDLIMRDGTVTVFIEVRYRRSARYGDAAASVTPQKQQRLLKAARLWLCRQNGSFETVDCRFDVVAFTGNDIQWLKNAFGE
>NC_017540.1|WP_002918211.1|4389089_4389680_+|DnaA-initiator-associating-protein-DiaA
MLDRIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPGLPAIALNTDNVVLTAIANDRLHDEIYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGQQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
>NC_017540.1|WP_002918214.1|4389689_4390265_+|divisome-associated-lipoprotein-YraP
MKALSPLAILLSALLLQGCVAAAVVGTAAVGTKAATDPRTVGTQVDDSTLELRVNSALSKDEQIKKQARINVTAYQGKVLLTGQSPTPDLSARAKQIAMGVEGTTEVFNEVRQGQPIGLGTASSDTWITTKVRSQLLSTDQVKSSNVKVTTENSEVFLMGLVTDREGRAAADIASRVSGVSRVTTAFTYIK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1037511 : 1086565

Salmonella_phage(23.33%)

head,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004191607.1\|1037511_1038897_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
WP_004223130.1\|1038942_1039155_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143017.1\|1039156_1040023_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004223135.1\|1041493_1041829_-	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_014599052.1\|1041830_1042049_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.0e-12	52.2
WP_004223138.1\|1042045_1042423_-	DUF2591 family protein	A0A1J0GUX1	Halomonas_phage	2.0e-07	30.7
WP_004223140.1\|1042419_1042986_-	hypothetical protein	A0A077SLQ8	Escherichia_phage	9.1e-41	48.3
WP_004223143.1\|1042982_1043204_-	hypothetical protein	NA	NA	NA	NA
WP_004223147.1\|1043200_1043857_-	DNA methyltransferase	G8C7S6	Escherichia_phage	1.0e-112	86.6
WP_004223150.1\|1043853_1044282_-	hypothetical protein	M9NYX4	Enterobacteria_phage	4.4e-64	81.0
WP_004223153.1\|1044278_1044959_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	2.3e-123	92.9
WP_004223156.1\|1044955_1045801_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	9.0e-69	59.2
WP_004223159.1\|1045816_1046101_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	3.1e-29	60.6
WP_004223161.1\|1046191_1046722_-	HNH endonuclease	A0A173GC65	Salmonella_phage	2.9e-33	45.3
WP_004223163.1\|1046785_1046992_-	hypothetical protein	A0A0M4S6W3	Salmonella_phage	1.5e-30	92.6
WP_181875105.1\|1046984_1047110_-	hypothetical protein	NA	NA	NA	NA
WP_004223168.1\|1047418_1047622_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	2.3e-18	70.1
WP_004223171.1\|1047657_1048062_-	hypothetical protein	A0A0P0ZDD3	Stx2-converting_phage	1.9e-56	84.3
WP_004223174.1\|1048058_1048727_-	hypothetical protein	A0A0P0ZCT8	Stx2-converting_phage	1.7e-99	87.8
WP_004223177.1\|1048723_1049011_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.5e-47	95.8
WP_071820781.1\|1049272_1049962_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	5.1e-86	70.2
WP_004178811.1\|1050066_1050300_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
WP_004223188.1\|1050339_1050561_+	hypothetical protein	NA	NA	NA	NA
WP_032448145.1\|1050694_1051423_+	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	7.8e-37	73.0
WP_004178817.1\|1051419_1052196_+	hypothetical protein	A0A193GYX1	Enterobacter_phage	1.1e-94	65.0
WP_004223202.1\|1052195_1052498_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004223205.1\|1052494_1052719_+	hypothetical protein	H9C169	Pectobacterium_phage	5.7e-15	52.9
WP_004223208.1\|1052715_1053129_+	hypothetical protein	R9TME7	Aeromonas_phage	1.1e-11	37.8
WP_004223213.1\|1053357_1053846_+	hypothetical protein	A0A2H4N7C3	Pectobacterium_phage	1.9e-07	34.9
WP_004223219.1\|1054201_1054582_+	HNH endonuclease	K7P7B7	Enterobacteria_phage	6.0e-65	95.2
WP_004223223.1\|1054578_1055577_+	DUF551 domain-containing protein	R9TQX3	Aeromonas_phage	5.9e-35	76.2
WP_004223227.1\|1055576_1055780_+	hypothetical protein	NA	NA	NA	NA
WP_004223230.1\|1055937_1056534_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.1e-56	54.3
WP_032413853.1\|1056539_1056710_+	NinE family protein	G8C7V4	Escherichia_phage	2.8e-14	71.4
WP_032448009.1\|1056702_1057284_+	recombination protein NinG	E7C9S3	Salmonella_phage	9.3e-41	47.3
WP_004223243.1\|1057280_1057511_+	hypothetical protein	NA	NA	NA	NA
WP_001548467.1\|1057507_1057648_+	YlcG family protein	NA	NA	NA	NA
WP_001548468.1\|1057644_1058334_+	antitermination protein	I6PDF8	Cronobacter_phage	2.0e-58	53.2
WP_004223255.1\|1059413_1059734_+	hypothetical protein	H6WRZ3	Salmonella_phage	6.5e-44	86.1
WP_014599053.1\|1059730_1060234_+	lysozyme	M1FJA0	Enterobacteria_phage	2.9e-75	82.0
WP_004223264.1\|1060230_1060581_+	hypothetical protein	R9TPM9	Aeromonas_phage	2.3e-10	38.7
WP_029497274.1\|1061310_1061949_+	hypothetical protein	I6S676	Salmonella_phage	2.1e-94	75.0
WP_004223268.1\|1061979_1062459_+	DUF2280 domain-containing protein	F1C5D6	Cronobacter_phage	1.4e-63	74.8
WP_004223271.1\|1062445_1063924_+	hypothetical protein	G0ZND4	Cronobacter_phage	2.7e-254	86.4
WP_004223274.1\|1063993_1064410_+	hypothetical protein	NA	NA	NA	NA
WP_004223277.1\|1064477_1065827_+	DUF1073 domain-containing protein	Q5G8Y4	Enterobacteria_phage	1.7e-215	82.4
WP_032448010.1\|1065786_1066713_+\|head	SPP1 gp7 family phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	1.5e-162	92.2
WP_004223282.1\|1066715_1067981_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	4.2e-219	90.7
WP_004223284.1\|1067993_1068443_+	hypothetical protein	I6S1Q2	Salmonella_phage	7.1e-65	85.2
WP_004223286.1\|1068460_1069537_+	hypothetical protein	Q5G8Y0	Enterobacteria_phage	2.9e-189	91.0
WP_004223289.1\|1069546_1069840_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	3.6e-41	87.6
WP_004223291.1\|1069906_1070308_+	hypothetical protein	G0ZNE1	Cronobacter_phage	4.7e-52	74.6
WP_004223294.1\|1070307_1070478_+	hypothetical protein	Q5G8X7	Enterobacteria_phage	3.4e-12	50.0
WP_004223297.1\|1070481_1070865_+	hypothetical protein	NA	NA	NA	NA
WP_004223307.1\|1070861_1071224_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	4.8e-19	46.7
WP_004223309.1\|1071323_1071866_+	HNH endonuclease	A0A2I7S0H7	Vibrio_phage	6.9e-38	46.8
WP_004223311.1\|1071917_1072286_+	hypothetical protein	F1C5E3	Cronobacter_phage	1.9e-47	82.0
WP_032448011.1\|1072282_1072666_+	hypothetical protein	F1C5E4	Cronobacter_phage	1.6e-28	48.8
WP_004223316.1\|1072724_1073489_+	immunoglobulin domain-containing protein	G0ZNE6	Cronobacter_phage	1.2e-40	43.0
WP_004223319.1\|1073557_1074253_+	hypothetical protein	G0ZNE7	Cronobacter_phage	6.1e-63	54.2
WP_004223321.1\|1074447_1074810_-	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	3.3e-12	65.6
WP_004223324.1\|1074922_1075096_+	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	5.1e-19	85.7
WP_004223327.1\|1075085_1075790_+	hypothetical protein	H6WRU8	Salmonella_phage	2.4e-38	39.8
WP_004223330.1\|1075859_1076612_+	hypothetical protein	A0A0P0ZD96	Stx2-converting_phage	1.2e-59	53.9
WP_004223331.1\|1076705_1076918_+	hypothetical protein	H6WRV2	Salmonella_phage	2.8e-11	63.8
WP_004223334.1\|1076992_1077325_+	hypothetical protein	NA	NA	NA	NA
WP_004223337.1\|1077321_1077792_+	hypothetical protein	NA	NA	NA	NA
WP_004223340.1\|1077883_1080457_+	hypothetical protein	F1C5E9	Cronobacter_phage	3.4e-95	35.9
WP_032448012.1\|1080498_1080975_+	hypothetical protein	A0A2P1MXB5	Escherichia_phage	8.7e-37	49.0
WP_004223344.1\|1080974_1081445_+	hypothetical protein	F1C5F1	Cronobacter_phage	9.9e-25	37.0
WP_004223348.1\|1081441_1081837_+	C40 family peptidase	F1C5F2	Cronobacter_phage	1.4e-35	53.6
WP_004223351.1\|1081823_1084295_+	hypothetical protein	F1C5A7	Cronobacter_phage	6.3e-203	45.2
WP_032448013.1\|1084381_1086565_+	hypothetical protein	B5TAB2	Burkholderia_phage	2.8e-82	42.4

DBSCAN-SWA_2

1535906 : 1612305

Salmonella_phage(60.0%)

terminase,capsid,tRNA,portal,lysis,plate,integrase,protease,tail,head

attL 1535150:1535170|attR 1568386:1568406

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1535150:1535170	attL	NA	NA	NA	NA
WP_162784327.1\|1535906_1536860_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	2.0e-93	55.6
WP_004223857.1\|1537011_1537383_-	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	6.2e-30	52.4
WP_004223864.1\|1538443_1539028_-	hypothetical protein	NA	NA	NA	NA
WP_004223865.1\|1539039_1539600_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.0e-40	44.8
WP_004223867.1\|1539725_1539947_+	hypothetical protein	NA	NA	NA	NA
WP_004223868.1\|1539979_1540489_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.4e-72	82.1
WP_004223870.1\|1540496_1540697_+	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	1.2e-24	80.3
WP_004223879.1\|1540660_1541002_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.3e-45	80.5
WP_004223882.1\|1541069_1541306_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	8.2e-12	55.4
WP_004223883.1\|1541305_1541533_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	7.8e-28	80.0
WP_032448014.1\|1544530_1546195_+	hypothetical protein	X2KLG0	Campylobacter_phage	4.5e-11	24.9
WP_004223897.1\|1546241_1547270_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	6.2e-173	90.3
WP_032448015.1\|1547269_1549033_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	92.6
WP_004223903.1\|1549172_1550006_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.2e-99	74.4
WP_004223906.1\|1550022_1551075_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	2.1e-171	89.1
WP_004174300.1\|1551078_1551729_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	9.6e-103	86.6
WP_004223908.1\|1551825_1552290_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.7e-74	84.4
WP_002896155.1\|1552289_1552493_+\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_004223911.1\|1552496_1552712_+	hypothetical protein	E5G6N0	Salmonella_phage	1.5e-28	85.9
WP_004223915.1\|1552692_1553202_+	lysozyme	E5G6N1	Salmonella_phage	9.5e-82	83.4
WP_004223918.1\|1553206_1553635_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	5.6e-51	77.9
WP_162784326.1\|1553609_1553768_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.1e-15	75.0
WP_004223921.1\|1553730_1554162_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_004223923.1\|1554154_1554607_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.5e-50	71.4
WP_014599113.1\|1554619_1555282_-	hypothetical protein	NA	NA	NA	NA
WP_004223927.1\|1555385_1555958_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.1e-77	72.3
WP_004174325.1\|1555954_1556317_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	9.9e-49	84.7
WP_004223930.1\|1556303_1557212_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	3.4e-106	66.9
WP_004223933.1\|1557204_1557801_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.8e-55	56.0
WP_004223940.1\|1557806_1560032_+	hypothetical protein	K4I5E8	Salmonella_phage	3.0e-10	41.3
WP_004223943.1\|1560045_1560321_+	hypothetical protein	NA	NA	NA	NA
WP_004223945.1\|1560490_1561558_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.2e-38	51.8
WP_004223947.1\|1561696_1562869_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.4e-205	90.8
WP_004150986.1\|1562878_1563394_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004223950.1\|1563446_1563746_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.4e-32	77.0
WP_002896220.1\|1563760_1563880_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_004223954.1\|1563872_1566503_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	6.8e-115	38.9
WP_004223957.1\|1566499_1566985_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.0e-64	77.6
WP_004223960.1\|1566981_1568079_+	phage late control D family protein	E5G6Q3	Salmonella_phage	4.5e-169	82.2
WP_004223962.1\|1568165_1568384_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	8.3e-19	66.2
WP_002896351.1\|1570555_1570939_+	inner membrane protein YbjM	NA	NA	NA	NA
1568386:1568406	attR	NA	NA	NA	NA
WP_002896352.1\|1570945_1571209_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896354.1\|1571411_1571699_+	YbjC family protein	NA	NA	NA	NA
WP_004179133.1\|1571682_1572405_+	nitroreductase NfsA	NA	NA	NA	NA
WP_002896363.1\|1572519_1573422_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896365.1\|1573510_1573990_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_004223967.1\|1574338_1575451_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896370.1\|1575614_1576748_+	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896371.1\|1576758_1577712_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896372.1\|1577708_1578554_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896376.1\|1578611_1579100_+	DUF2593 family protein	NA	NA	NA	NA
WP_004223969.1\|1579141_1580269_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	2.3e-19	25.6
WP_002896380.1\|1580347_1581064_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896382.1\|1581060_1582533_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896384.1\|1582619_1583351_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004191163.1\|1583534_1584203_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896386.1\|1584202_1584919_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_002896390.1\|1584925_1585657_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004223976.1\|1585677_1586406_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	7.9e-29	36.7
WP_004223978.1\|1586632_1587148_-	lipoprotein	NA	NA	NA	NA
WP_025368307.1\|1588025_1589165_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_004209681.1\|1589196_1590027_+	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_002896399.1\|1590023_1591037_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004223986.1\|1591124_1592567_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_004176702.1\|1592577_1593579_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_004176700.1\|1593617_1595336_-	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_014599114.1\|1595487_1595922_+	DoxX family protein	NA	NA	NA	NA
WP_004147771.1\|1596133_1597102_-	NADH oxidoreductase	NA	NA	NA	NA
WP_004176696.1\|1597112_1598765_-	hydroxylamine reductase	NA	NA	NA	NA
WP_002896434.1\|1599922_1600618_-	aquaporin Z	NA	NA	NA	NA
WP_004176693.1\|1601037_1602696_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896440.1\|1602842_1603958_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004191149.1\|1603954_1605895_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.5e-37	40.5
WP_002896516.1\|1605971_1606193_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|1606518_1606836_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|1606866_1609146_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|1609265_1609484_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002898014.1\|1609837_1610539_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004224003.1\|1610583_1612305_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_3

2279765 : 2290653

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|2279765_2280386_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_004224682.1\|2280378_2281644_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.8e-234	99.8
WP_002903955.1\|2281655_2282558_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210513.1\|2282819_2283581_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_001620095.1\|2283601_2284462_-	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
WP_004176262.1\|2284759_2285020_+	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_001620097.1\|2285106_2286195_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004176258.1\|2286225_2287491_-	MFS transporter	NA	NA	NA	NA
WP_004224683.1\|2287545_2290653_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5

DBSCAN-SWA_4

3277438 : 3284345

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004149058.1\|3277438_3278917_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3
WP_004175198.1\|3278913_3279636_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004899464.1\|3279954_3281316_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004151134.1\|3281558_3282455_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004899467.1\|3282697_3283471_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_004175147.1\|3283481_3284345_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017541

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

143087 : 194503

Stx2-converting_phage(13.33%)

integrase,transposase

attL 141498:141518|attR 172921:172941

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
141498:141518	attL	NA	NA	NA	NA
WP_004213833.1\|143087_144224_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014599324.1\|144289_144607_-	hypothetical protein	NA	NA	NA	NA
WP_004197568.1\|144758_145082_-	hypothetical protein	NA	NA	NA	NA
WP_011154511.1\|145833_146793_-	hypothetical protein	NA	NA	NA	NA
WP_014599325.1\|146835_147243_-	hypothetical protein	NA	NA	NA	NA
WP_004213821.1\|147252_147696_-	hypothetical protein	NA	NA	NA	NA
WP_004213807.1\|148959_149928_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
WP_014599326.1\|150255_151848_-\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.2e-176	61.6
WP_004189161.1\|151878_152229_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_004215130.1\|152225_152666_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.4e-19	53.8
WP_004117790.1\|154293_155265_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-150	86.9
WP_014599327.1\|155264_156431_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	9.8e-223	97.2
WP_004211839.1\|157160_158171_+	replication initiation protein	J9Q7H0	Salmonella_phage	1.1e-86	53.5
WP_004211835.1\|160490_161027_-	hypothetical protein	NA	NA	NA	NA
WP_004214667.1\|163777_164560_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	3.0e-135	96.1
WP_014599329.1\|166586_166910_-	hypothetical protein	NA	NA	NA	NA
WP_014599330.1\|166906_167344_-	hypothetical protein	NA	NA	NA	NA
WP_004902347.1\|167343_168375_-	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	2.9e-08	26.1
WP_004902350.1\|168374_169241_-	ParA family protein	NA	NA	NA	NA
WP_004902354.1\|169764_170016_-	hypothetical protein	NA	NA	NA	NA
WP_014599331.1\|170204_171896_+	hypothetical protein	NA	NA	NA	NA
WP_004225014.1\|171913_172882_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.2e-172	91.3
WP_004026379.1\|173113_173524_+	hypothetical protein	NA	NA	NA	NA
172921:172941	attR	NA	NA	NA	NA
WP_004902361.1\|173575_174064_+	hypothetical protein	NA	NA	NA	NA
WP_004902363.1\|174148_174562_+	hypothetical protein	NA	NA	NA	NA
WP_004902367.1\|174885_175416_+	hypothetical protein	NA	NA	NA	NA
WP_004902370.1\|175418_175985_+	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
WP_071820813.1\|178545_179253_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_014599332.1\|179794_180427_+	transcriptional regulator	NA	NA	NA	NA
WP_004213611.1\|180806_181358_+	response regulator transcription factor	NA	NA	NA	NA
WP_004213613.1\|181430_182333_+	DMT family transporter	NA	NA	NA	NA
WP_004213615.1\|182475_182697_-	hypothetical protein	NA	NA	NA	NA
WP_014599333.1\|182758_184933_-	siderophore salmochelin receptor IroN	A0A0P0I887	Acinetobacter_phage	2.8e-05	30.6
WP_004902400.1\|185392_186622_-	esterase family protein	NA	NA	NA	NA
WP_050813274.1\|186726_190371_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.2e-46	29.7
WP_004213623.1\|190513_191629_-	glycosyltransferase	NA	NA	NA	NA
WP_074160420.1\|191644_191872_-\|transposase	transposase	NA	NA	NA	NA
WP_004213626.1\|191978_192623_-	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	5.6e-55	53.7
WP_004213628.1\|192607_193840_-	phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	6.3e-63	34.0
WP_011154590.1\|194296_194503_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.7e-11	52.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017540

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017541

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection