CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_015850	Acidithiobacillus caldus SM-1, complete sequence	6 crisprs	csa3,DEDDh,PrimPol,cas14j,cas6e,DinG,cas3,Cas9_archaeal	8	11
NC_015851	Acidithiobacillus caldus SM-1 megaplasmid, complete sequence	0 crisprs	csa3,TnsE_C,cas14j,RT	0	2
NC_015854	Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence	1 crisprs	csa3	7	0
NC_015853	Acidithiobacillus caldus SM-1 plasmid pLAtc2, complete sequence	0 crisprs	NA	0	0
NC_015852	Acidithiobacillus caldus SM-1 plasmid pLAtc1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015850_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015850_1

1156281-1156367

Orphan

Consensus_repeat	Method
AAACTCTAGCCAGACTCTAGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015850_1

>merge|NC_015850|1|1156281-1156367|CRISPRCasFinder
AAACTCTAGCCAGACTCTAGCCAGGGAGTGTTTTGGGCGCCGCGCGACGACGTTCCTCTTGTAGGATTTTTGGCAAACTCTAGCCAG

>NC_015850|1|1|1156281-1156367|CRISPRCasFinder
AAACTCTAGCCAGACTCTAGCCAG	GGAGTGTTTTGGGCGCCGCGCGACGACGTTCCTCTTGTA
GGATTTTTGGCAAACTCTAGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015850.1\|WP_014002536.1\|1144577_1145795_+\|ISL3-like-element-ISAtc2-family-transposase	unknown	unknown	gnl\|CDD\|376574
NC_015850.1\|WP_014002663.1\|1149786_1150050_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_015850.1\|WP_103415114.1\|1160665_1160977_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235388
NC_015850.1\|WP_014002672.1\|1158655_1159000_+\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|274123
NC_015850.1\|WP_148262196.1\|1146030_1146804_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002670.1\|1156722_1157664_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|197226
NC_015850.1\|WP_014002165.1\|1148706_1149492_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224401
NC_015850.1\|WP_041636155.1\|1151567_1154726_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NC_015850.1\|WP_014002677.1\|1161125_1161542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371145
NC_015850.1\|WP_187288657.1\|1158478_1158646_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002679.1\|1162859_1163390_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_049784736.1\|1150337_1150562_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_064306254.1\|1150576_1151122_+\|type-II-toxin-antitoxin-system-MqsA-family-antitoxin	unknown	unknown	gnl\|CDD\|274805
NC_015850.1\|WP_041636158.1\|1155178_1155358_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002673.1\|1159045_1159552_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|136097
NC_015850.1\|WP_014002671.1\|1157665_1158433_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277349
NC_015850.1\|WP_014002680.1\|1163455_1163986_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002666.1\|1151118_1151571_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002164.1\|1147174_1148698_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_015850.1\|WP_103415113.1\|1160017_1160551_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680

Protein	Function_ID	Function_description	E-value
NC_015850.1\|WP_014002536.1\|1144577_1145795_+\|ISL3-like-element-ISAtc2-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	1.11624e-91
NC_015850.1\|WP_014002663.1\|1149786_1150050_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	1.69277e-06
NC_015850.1\|WP_103415114.1\|1160665_1160977_+\|hypothetical-protein	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0.00168569
NC_015850.1\|WP_014002672.1\|1158655_1159000_+\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|274123	TIGR02419, kDa_protein_in_gpA_5'region, phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions].	1.8785e-07
NC_015850.1\|WP_014002673.1\|1159045_1159552_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|136097	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional.	6.04625e-59
NC_015850.1\|WP_014002165.1\|1148706_1149492_+\|ATP-binding-protein	gnl\|CDD\|224401	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair].	8.61275e-52
NC_015850.1\|WP_103415113.1\|1160017_1160551_+\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	4.82485e-36
NC_015850.1\|WP_014002677.1\|1161125_1161542_+\|hypothetical-protein	gnl\|CDD\|371145	pfam10577, UPF0560, Uncharacterized protein family UPF0560. This family of proteins has no known function.	1.84709e-06
NC_015850.1\|WP_041636155.1\|1151567_1154726_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	7.84734e-94
NC_015850.1\|WP_064306254.1\|1150576_1151122_+\|type-II-toxin-antitoxin-system-MqsA-family-antitoxin	gnl\|CDD\|274805	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.	1.3909e-42
NC_015850.1\|WP_014002671.1\|1157665_1158433_+\|metallophosphoesterase	gnl\|CDD\|277349	cd07404, MPP_MS158, Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.30912e-40
NC_015850.1\|WP_014002164.1\|1147174_1148698_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.23926e-25
NC_015850.1\|WP_014002670.1\|1156722_1157664_+\|GTP-binding-protein	gnl\|CDD\|197226	cd09128, PLDc_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized phospholipase D-like proteins. Putative catalytic domain, repeat 2, of uncharacterized phospholipase D (PLD, EC 3.1.4.4)-like proteins. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.	3.59634e-44

>NC_015850.1|WP_041636158.1|1155178_1155358_+|hypothetical-protein
MKAVEKVKNMFTRLVAVAKEEATKDKVEVYKRLSETTEAEGGARAAGVIAFYTGKRRQP
>NC_015850.1|WP_041636155.1|1151567_1154726_+|type-I-restriction-endonuclease-subunit-R
MSIHQEIRFESEICADMAKQGWHYTPPEGSIVSPDAARFDAGYALFPDDVRDWLIASQPDAWERLEKSYGERALTEVLGRLRKVLDTEGTLHVLREGIELLGLKRPLRLAEFAPASGMNPEILARYHANRLRVVRQVHYSTAEPAKSLDLVLFLNGIPVATAELKSDYTQSIEDAVYQYKRDRNPRPVRTAAPEPLSSFPGGALVHFAVSQSEVRMTTRLAGFDTTFLPFNQGNGGGAGNPPNPAGFSTEYLWKSVWARDSWLEILGSYLVPVRDKKQQLRGVIFPRYHQLDATRRIVDAVRRDGPGDKYLIQHSAGSGKTHSIAWTASRLSTLHDAQDGKVFDSVIVVSDRTVLDDQLQDALRSHQRTKGAIAYIQGERKSKSVELSEALAGNKPIIVCTLQTFPFTLQHIRELAATQGKRFAVVADEAHSSQSNETAAHIKVLLAGGALDMDAEEDVSVEDVLTTEMEAKASGKESSITYVAFTATPKAKTLELFGTRPKPDAPAGPDNLPAPFHVYSMRQAIEEGFILDVLKNYTTYEMAFQLAHRGKTAPVVDASTATAGVMGWVQLHSYNIAQHVRIVVEHFRKFVAPLLNGQAKAMVVTSSRLEAVRWHVAMREYIEKQGYPLRTLVAFSGEVEDQELFEKPVSETSTLLNPDLRGRSIRKAFSPDDGKPGEYAILLVANKFQTGFDEPLLCGMYVHKRLDGIQAVQTLSRLNRAYPGKETTYIVDFINDAEDILKAFQPYYETAELASTSDPAQIYDLRAKLDNMGYYTEEQVDAVVTAVVTGAKQSAVDAVLRLLAEELLQRFARAQAVWRAHQPDKLQECAAQEAKAEMDALWLFKKDMGTFVRSYAFLSQIFDYGNTAIEKRAIFFKLLQRLLTFGRDTETVDLSELALTHYTLKELESQHIVLSKGGALKPGKPGEGHVQEKHKESLDVIIQRVNALFEGHISESDKLIYVNNVILGKLVDCQLLVEQAANNTKEQFANSPDLDKQILDAILDAMDSFSAMSTQALESERVRRELKEILLGPAGLYERLREGQLGKGGGKC
>NC_015850.1|WP_014002666.1|1151118_1151571_+|hypothetical-protein
MSTAQMHAFTLLDIYTIEGSFRSAPNFKFENFETVKAQTRQQVTQAVVLQMDDGRRMLRVTLEMAVRWLGADTITEKAQIELLFAAEYVFTGEPDKATIDNFALNVTPYNVWPYFREYVANLSARMSLPRLTLPALTPGANTPTWPQIEA
>NC_015850.1|WP_064306254.1|1150576_1151122_+|type-II-toxin-antitoxin-system-MqsA-family-antitoxin
MAESTSVRCPLCGEGSLVLHHEEQTVEYRGTTGNIPYRYKVCTSCGSEQADMDDLRFNRRAMRAFKKSVDGLLTGEEVRRIRERLRITQAKAATLFGGGPVAFSKYESDDIVQSEAMDKLLRLADAFPETVLTFLRQREGIATPREERAWTPVVVEGGRLAGELSREEFTSETPEAWQDAL
>NC_015850.1|WP_049784736.1|1150337_1150562_+|hypothetical-protein
MPTLLKEVLLHGTYRNSEWCEQGTSGPWAACDAYSHARLEWVPTLGRETRVDYYVKFARNRAGNVLLLVSFHLS
>NC_015850.1|WP_014002663.1|1149786_1150050_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MRSVDWREAQNRLDSLLDMVQKEPVTVTRDGQVVAFLVSPEEFRLLEDFLAARSRRRENAAEFEALFDTNAGADSRKIRGDAPNGGE
>NC_015850.1|WP_014002165.1|1148706_1149492_+|ATP-binding-protein
MQTHELQSSLRALRLSGILESLEARNRQAIDGQLAYTEFLALLLQDEIARRDQKRFDTLLRQAQFRNHKTLEDFAFDRLPSLNRSLVHDLATGRYLREKAPVLIVGPCGTGKSHLAQALGHCAIRQGVDVRFMSQSALAGALHAARATGTYDRVFRQLAKVSLLIIDDFGLKPLRPPHDEDIHDLIGARYEQATTMVTSNLDFSEWGDVFPANRMLGVATIDRLRHGAYRLILEGESYRAPRPLPEVPKKPVAKGAKIAQS
>NC_015850.1|WP_014002164.1|1147174_1148698_+|IS21-family-transposase
MFTIRQILVRMRQGDTDRSIARAGLMGRKKLGVLRRQATRLGWLDSHTPLPEDGELATVFQRRSESQPAQCQSSLRDHEQRIAEWVAQGIQATTIHAALVRQYGFPGSYSAVKRLVRRIRQAVPPKVTSRLVFAPGEAAQVDFGAGPLLADPRTGELRKTWFFVMTLCWSRHQYAEFVWDQSVTTWLACHRHAFSWFGGVPTRIIIDNAKCAITKACINDPAVQRAYGEYAEGYGFRIDPCPPRDPQKKGIVEAGVKYIKRSFLPLREFRDRDDAQQQLREWVLGEAGNRVHGTTRQVPLTQFAQVERALLQPLPTNPPEICTWARPKVGQDGHVQFARCHYSVPFRFVGQSLWLRATDTTVRIYAEHELVATHPRLFQAGSFATVLDHLPPEAEAWQRQDLQWCLEMARGIGPHCHGVVHQLFADRQLANLRPVQNLLRLRLKYSPERLEAACARALHFGNARYQSVASILKHGTDQEPLPQQDLASDSTYTRGGRFLRDSKTLFH
>NC_015850.1|WP_148262196.1|1146030_1146804_+|hypothetical-protein
MKESPFWSALFEAYSQAGDGDKKFKIEQIRNKAQSQSGGYIGQPFSEDAAKGVFHLMSRASPHTTRFVWWASYLVLFVAEILFGFVLFSSISAETFRQPSPGHPFWWVDGSWSKIFYGLMLFYIFSIGCLSPIASLLNILVTRIRQFGVHKMHRPKVLNRKHVRVIALLTFGFYVLSAVLYSYGAGHGYGRFVGHLSNTLGIPKIAHALGRFAATVALPFAIKEIGLLGSVTRPLAEKLLGHAIRGTNLSLGLLKSC
>NC_015850.1|WP_014002536.1|1144577_1145795_+|ISL3-like-element-ISAtc2-family-transposase
MDQGNQLFTLALGLVPPWAVDAVRFTVEEKRLDLYVNFSRGSHFPCPVCGQDCPVHDTQEKVWRHLDFFQHAAYLHARVPRVQCPEHGVHLVPVPWAREGSGFTLLFEALVMAMVREMPVLTVSRLVRETDQRLWRVIDHYVSKAREAVDMSEVQAIGVDETNSRRGHDYISLFVDLAAKRLLFATPGKDAQTFEKFCEDLQAHGGNSEAIAEVSMDLSPAFQKGAAEHLPNAQVTFDRFHLMKLINEAVDVVRKGEVYSQPDLKKSRWLWLKNPGKLSAKQSAKLQELLKNQNLKTAQAYQFRLTFQEIFTIQNRHQGAVLLKAWMENAKASGLPPLVKVTYTLMNHWDGILRWFESQITNGILEGFNSLLQSAKAKARGYRTHKNFINMAYLILGKLDLRLPT
>NC_015850.1|WP_014002670.1|1156722_1157664_+|GTP-binding-protein
MPLYIEPNAGPAPILQVIDSARHQLDIGVYYLDDRQILAAVRDAVRRGVDVRIMVEPKPYGMKPWQVRKEVRAIESTGAHFRYVPNRFVSHGDRYAFYHAKYCVNGHEAEIGTANFDWSAFHRNREYLYDTTNTTVVRAVQAVFDADWNRQHAPAWTHRVLVLSPGTSADQLLRVIEQPGPVDVESEELGPYRPILDALAAKGKDLRMILPATISAEDRRDVAFLEQHGCQARLMPKKPIYMHAKMIVGNHLAFIGSENFTRTSLEDNREMGLLLNGSDLAHLQAQFDSDWAMAGGHPTSGVLGKLKGWFSRF
>NC_015850.1|WP_014002671.1|1157665_1158433_+|metallophosphoesterase
MRIAFASDIHTEIVALDYYRQTVFTKILQTADVVILAGDIATTPDGLRAVAMWLRAKTRAPILFVLGNHEYYQQVFPSALRDYHAALSDVPAAYLLEKSKIRIGGVRFLGCTLWTDFAGGRHLATCEAGMNDFALIVDVETNKPIRAARIAMEHAASVDWLDTQFPDPMPTVVVTHHAPSFLSNHPRFAGSSITGGFCANLDERILSWRPKLWIHGHLHDPVEYTIGKTMIVSHPWGYPDERGRIPWFRILDLEI
>NC_015850.1|WP_187288657.1|1158478_1158646_+|hypothetical-protein
MKRKTMYQIREYPSDVAYSKPLGFKLRSRQRADKLRIRLSNRGRDCFLVKFIVHC
>NC_015850.1|WP_014002672.1|1158655_1159000_+|TraR/DksA-C4-type-zinc-finger-protein
MLQGDEGDIASQFEEAERVAAISRLRLGPQEEPDEDDQGNRYCLDCGEIIPPARVQAVQAVRCVDCASRLERGKPRVGVGGISRYLRVENDGQQTGSSALDDDLHVEDIGIAKL
>NC_015850.1|WP_014002673.1|1159045_1159552_+|single-stranded-DNA-binding-protein
MSGVNKVILLGYLGADPEMRYMPDGTAVANLSIATSESYKDKEGNRQERTEWHRVSLYRRQAEVAGEYLKKGSMAYVEGRLRTRKWTDKEGQERYTTEIVGDRFQMVGSRRDRDGQESANGGSKNGRPASKGSGGGANMDVPPEDFDDEIPFAIAADIARRGLRRVRF
>NC_015850.1|WP_103415113.1|1160017_1160551_+|uracil-DNA-glycosylase
MLHLPLLVIGEAPGADEDVQGRGFVGRAGRTLHRLLESFGLVRWYQYGCANIVRCRPEGNRRPTAEEIWNCGDFLLETLERSEPEAILLVGGTATSVFCGSGPLHTHIVDLRRGDHQLNLDLCHPRLKPFFEQRAVRVFAIPHTSPLSWNRNAPDGRKWSEWAKEEVRVLSAVFAKR
>NC_015850.1|WP_103415114.1|1160665_1160977_+|hypothetical-protein
MADLEAKRQQMEAKLREQLAKIDEEKRRLAGSPSLRKAQMENQKRFERAVQKIAPDLDHRHFIAIIADAVESGFDTDAMADRGESLLQEHGKARRGRRPRSAA
>NC_015850.1|WP_014002677.1|1161125_1161542_+|hypothetical-protein
MDIQTVDQQYQQLQQEAQGVMQSLQTLAGKLKTAADGGNQDAREWLLDLKELALNIQQEQQQVMSVMQALHQAMQNQSQPQWQPGYPQTPQQQGYGQPAMQQGQGGGFLSSFLNSGFGRAIELGAGFGIGDDLINSIF
>NC_015850.1|WP_014002679.1|1162859_1163390_+|hypothetical-protein
MRVFTDKRSGQPYVEIATRAPVKMQMYAKTLAFSHGRTLKGEYKEAAERFFREKPWEQGLKWRPIRGLTARLKDSMGKNEAIGWMQVNMRFPVEIGNDLERLAAEQGVSLSSVCYTLLYWWTWWIYPPASERQRREDYLRFTKSDTHTQDSPKKPGIPKGNRDGQSPSPTEPIPIH
>NC_015850.1|WP_014002680.1|1163455_1163986_+|hypothetical-protein
MEASYDVLREIIDTAKGRTLETYREALRYREIPCDSDWRRYLMWRFPPIAQAHIVKAMLAHPQGNTISDIQVTFLLDQGAKEAMAEILGVLLPEEHRLTVGELRSRLKNLPDCMPVFYERIGDEFLGKPGWTPKVFREKTDPGFPQGDSIECFSAFTAHVAVDEQGKEALVVTAHY

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Crispr_ID: NC_015850_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015850_2

1191970-1192072

TypeV

Consensus_repeat	Method
CCCCTGCGGGGCGCAGCCCTGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015850_2

>merge|NC_015850|2|1191970-1192072|CRISPRCasFinder
CCCCTGCGGGGCGCAGCCCTGCCGTCCGCACCGCTGCGCGGAGCAGGCTTGCCGCCGGCAGGACCGCCGTCCGCAGGACCCCCTGCGGGGCGCAGCCCGCCGC

>NC_015850|2|2|1191970-1192072|CRISPRCasFinder
CCCCTGCGGGGCGCAGCCCTGCCG	TCCGCACCGCTGCGCGGAGCAGGCTTGCCGCCGGCAGGACCGCCGTCCGCAGGAC
CCCCTGCGGGGCGCAGCCCGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015850.1\|WP_014002700.1\|1185891_1186263_+\|VirB3-family-type-IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|184348
NC_015850.1\|WP_041636196.1\|1193370_1194522_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_041636187.1\|1184715_1184976_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_015850.1\|WP_041636194.1\|1192698_1193295_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_041636199.1\|1195039_1195774_+\|conjugal-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|131827
NC_015850.1\|WP_014002698.1\|1184350_1184719_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|226679
NC_015850.1\|WP_014002702.1\|1190047_1190242_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_015850.1\|WP_014002712.1\|1204513_1204807_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002709.1\|1198176_1200771_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|368155
NC_015850.1\|WP_014002710.1\|1200775_1202491_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NC_015850.1\|WP_014002699.1\|1185480_1185873_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_004872948.1\|1190238_1190640_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_015850.1\|WP_014002707.1\|1195783_1197685_+\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|131830
NC_015850.1\|WP_014002703.1\|1192357_1192702_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_004872944.1\|1191075_1191909_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002701.1\|1186265_1189769_+\|conjugal-transfer-protein-TrbE	unknown	unknown	gnl\|CDD\|237536
NC_015850.1\|WP_148262197.1\|1182318_1182816_+\|type-IV-pilus-biogenesis-protein-PilM	unknown	unknown	gnl\|CDD\|369356
NC_015850.1\|WP_014002711.1\|1202804_1204517_-\|DUF2326-domain-containing-protein	unknown	unknown	gnl\|CDD\|378384
NC_015850.1\|WP_014002708.1\|1197764_1198025_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002697.1\|1182828_1184343_+\|shufflon-system-plasmid-conjugative-transfer-pilus-tip-adhesin-PilV	unknown	unknown	gnl\|CDD\|309860

Protein	Function_ID	Function_description	E-value
NC_015850.1\|WP_014002700.1\|1185891_1186263_+\|VirB3-family-type-IV-secretion-system-protein	gnl\|CDD\|184348	PRK13823, PRK13823, conjugal transfer protein TrbD; Provisional.	1.21806e-07
NC_015850.1\|WP_014002707.1\|1195783_1197685_+\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|131830	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL. The TrbL protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbL is a homolog of the F-type TraG protein (which is believed to be a mating pair stabilization pore-forming protein, pfam07916) as well as the vir system VirB6 protein. [Cellular processes, Conjugation].	1.01858e-30
NC_015850.1\|WP_041636187.1\|1184715_1184976_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	3.46707e-08
NC_015850.1\|WP_014002698.1\|1184350_1184719_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|226679	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	4.55967e-29
NC_015850.1\|WP_041636199.1\|1195039_1195774_+\|conjugal-transfer-protein-TrbJ	gnl\|CDD\|131827	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.	2.36665e-10
NC_015850.1\|WP_014002702.1\|1190047_1190242_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	4.75842e-19
NC_015850.1\|WP_014002709.1\|1198176_1200771_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|368155	pfam04851, ResIII, Type III restriction enzyme, res subunit.	6.41301e-07
NC_015850.1\|WP_014002711.1\|1202804_1204517_-\|DUF2326-domain-containing-protein	gnl\|CDD\|378384	pfam10088, DUF2326, Uncharacterized protein conserved in bacteria (DUF2326). This domain, found in various hypothetical bacterial proteins, has no known function.	4.08683e-32
NC_015850.1\|WP_004872948.1\|1190238_1190640_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	3.3726e-72
NC_015850.1\|WP_014002701.1\|1186265_1189769_+\|conjugal-transfer-protein-TrbE	gnl\|CDD\|237536	PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional.	5.65206e-115
NC_015850.1\|WP_148262197.1\|1182318_1182816_+\|type-IV-pilus-biogenesis-protein-PilM	gnl\|CDD\|369356	pfam07419, PilM, PilM. This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.	1.1825e-06
NC_015850.1\|WP_014002710.1\|1200775_1202491_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	2.51665e-21
NC_015850.1\|WP_014002697.1\|1182828_1184343_+\|shufflon-system-plasmid-conjugative-transfer-pilus-tip-adhesin-PilV	gnl\|CDD\|309860	pfam04917, Shufflon_N, Bacterial shufflon protein, N-terminal constant region. This family represents the high-similarity N-terminal 'constant region' shared by shufflon proteins.	4.9992e-26

>NC_015850.1|WP_004872944.1|1191075_1191909_+|hypothetical-protein
MEISLRVGTAEAFFKKAREVALIGDERRPLDLAKPRLSMIFETQDDLDDAIASAWVHCHNPEAFSRFPSFARPTADPLSALDRATLERIDRSFGKQPPWIRRQSDGGMDVRGTIGISVLEGSNLAVLLVGVRLAMEHLAFLARYMNIRDNIEIRVTPDRKILYIFPLERQRPLGMYVQMQPQDDHLIQGLSRVIHSGGAVAILIPKTVNALDCLDRFQGGMLSELPLSEMLETRLSFSGHGQRATTVPQRLTEQEIFSLGALPASRVTAAEVTRSTR
>NC_015850.1|WP_004872948.1|1190238_1190640_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MNYPIAIEPGDDHHAYGVVVPDLPGCFSAGDTLDEAIANAHEAIALWLETVMDDGGTIPAPSSVESLQKQPEFSGWIWAVVPVDLAKLSDRVERVNITLPARVLRRIDAAARAAGESRSGYLARCAIMGEPHS
>NC_015850.1|WP_014002702.1|1190047_1190242_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MNSGDLIKQLLADGWVVRATKGSHHIYIHPNKPGHITVPHPKKDLGVGLVNKILKQAGLKRSES
>NC_015850.1|WP_014002701.1|1186265_1189769_+|conjugal-transfer-protein-TrbE
MLNIREFRSKEHALPDLLNPAILAGEITLMNVPCAVLLNKDGSFSAGIRFSGPDRESLSHAAIDRLPSIVNQSVSRLDAGWSVHWTAIRTPADDYVAEDRCHFPDPVSRLIDLERRMQFEQEGAHFLSTYYAVFTWQTPPESQVSAGQMFIETKKGFESDSFDVLLRKFEDTLQGAVGILRASFSIEPLDARGLLTHYHECLTGLSHPVNPPAVPAYLDVVLGHHDFIAGVEPSIDGEHIDVVTVTGFPDRTNPLLLEDLHNLPFPLRMTTRMVLLDPLESKKLITSYREKWASSKFTLRDYISAAMSQGQLRADRADPFKQAMEQETALADGDVSSGAVRLGFFTFTVVLRHRDPKVLEERMRVVQNLLNQLGFVAKRETVNAVEAFLGSLPGHTWENVRRPVLSTMNFADLSAKTAVWAGKADCPSALMKDGGKAAPCLLYGQTTGSTPFRLNLHVSDLGHSMILGPTGCHAKGHPILMADGTIRPVEEVRIGDRVMGPDGQPRTVLTLHRGLSDRYRIVPIKGEPFVVNGDHILSLKRGHDVPSRAGEICNISVRDYLRKSLTFRHYHKLYRCAVREFASTQDGESLPMRPYLLGVILGDGSCAWPSGVSVTNPDEEIAEALLQEAVGDGFGVTRRKPAGRGVPVFGITKGANAVLRDLGCLGKSAEFKSVPAMYKTGSWNTRLEILAGLLDTDGSLSHNGFDFISKSRQLAEDVVFIARSLGLAAYLSEAYKSCQSFAEPRQYWRVYISGNTDIIPTRVQRKQASERRQKKDVLVTGFHVEPAGYGAYYGFEIDGDHLYLDGHFLAHHNSGKSTILNLLAAQWLRYRNARVICFDKGRSMYALTEAVGGQHYDIGGEYSQLAFAPLERIDSPNERVFAEEWLESLAILQGVPMSAQERAVIHRAVEGLAQESGRSISDFVNLVQSIQIKQAIEVYTGTGKYGDILDARHDGLDMHANFVTFEMDSLPQGESAKGIVVPILLYIFHRIESMLDGRPTLIVLDEAWSLLDNPLFLNKIREWLKVLRKKNAAVVFATQSLADIVNNPLLPVLQESCPTKIFLPNVEAGSKNLMPMYESFGLVDRQIELLQMATPKREYYFSSPDGQRLVSFAFGPVALAFCAVSDPRDVKRVAELKAQYGDEWRRLWLAERLPATVRDSWVRAFTE
>NC_015850.1|WP_014002700.1|1185891_1186263_+|VirB3-family-type-IV-secretion-system-protein
MYQSLVRPHLLMGAERQATLLNAGFAMLVYFFTMSLPGIVVAVVLFSITQAILQHLAKNDSQMIAIVQRSRKYQPFYGDGASLDAPYRDVPQFHTVAPTTKLLSWFTKAGKTKTQKSKVIAET
>NC_015850.1|WP_014002699.1|1185480_1185873_+|hypothetical-protein
MTEMVRSEQQFLGNRVRKWVPYVAGAAAMLVADAALAATGGPFASIGNFIQQNFMPAIGSIGIAGGIGYGAIHAFKHDYGKAIVGIGTAAGGGFVIHQYGWFGQQAGIQAATLGGHITVASALGHALGLL
>NC_015850.1|WP_041636187.1|1184715_1184976_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MSQAEKLKKRFLSDPIPKNFRWEELVRLMENLGFAIESGSGSARRFVSRERRELVLFIHQPHPQATLKEYQIRQIRQTLRENGILQ
>NC_015850.1|WP_014002698.1|1184350_1184719_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MSNILEYKGYQASVEYSAEDGVLFGKILHIPSLILFEAENAADIVSAFHKAVDDYLEYCDKKGLQPNKAFSGTLNVRIGPERHRKIAVYATKNGLSLNEAICGIIDALGTKRLFVAGDSRGC
>NC_015850.1|WP_014002697.1|1182828_1184343_+|shufflon-system-plasmid-conjugative-transfer-pilus-tip-adhesin-PilV
MNPVTIIFALMAIALMVPVGIHVLNDQSRQTMATVAALQMARIQKAAEGYITANAAAIEGTATSTNPATITIPMLVNTGYLPNGFQANNPYGQTWEVQVLQPSPGQLQALVLSTGGNPVPTRSLGLAAQIAGAAGGVVGGGSGTSSVPGCGAGQACGVYSGWKVPTSGFNAQPGHLAALIEYSNGQIQNDYLYRVSVPGQPQLNQMQTNLDMGNNNVNNAYDVNANHNVEAGPAGQCVENSEGHCTGEIEAAGTTQADLPSGWQGGMTTRDLMGVNGTVAEGTPGSPQAYMNDYGDGSAGGGGEVAAVDPSNGNYAVMNSSNTGSAPEIYTNGIVDAGNGFGAGSYFGFFNGSWMAFNGGNTYQWGSADINGNANVGGQVRAGYDVTLGTAGGSANIGQGCSPNGAIAANANGSGQVLACEGGKNPTWQAMGGGVTYEGNWWLQYGGVENIGYYTFCAQTGFITGFGGSALIYPVAGPYPGGIYLWQAQSLSDVAINVSCWDAS
>NC_015850.1|WP_148262197.1|1182318_1182816_+|type-IV-pilus-biogenesis-protein-PilM
MVAMILPFLLLMFVGFMAVSTKIPLNSNAVFPSNSGYSPENPGGSAFASDFVSLSKAALAYTENNPGVSGSLTAAQLSPYMGNNTFPPSWGASVQNGLVYAWTNSGGYAITPEIQNLTDGDCAYGSVENGQIVSSSKNCPGAVLGVSPTSLSNGTPIWTIAVPHN
>NC_015850.1|WP_014002703.1|1192357_1192702_+|hypothetical-protein
MFRHDAKSLVLYRAIHRKITAGDPLPYLRAARDWAARFSAERPEDIWLAEWVGRLDRAIASEAEREDLYRLMLSSAQHAIDMRSSSPFPMVLTSKERTMVLKEFERQWEAGGWQ
>NC_015850.1|WP_041636194.1|1192698_1193295_+|hypothetical-protein
MTEEQLEHLIRSSGAILGDSEILIIGSQSILPWLRKWAGKPPRAWPGVFTLSTEADIIPIDNDSKKSDLIDGVLGEDSYFHATYGYFAQGVSMETARAPEGWQARCYPLKSERTQGVVGYCMHPADLFIAKTMAGRPKDGPFLDAMIEHGIVEESTVLHLVPKIPNCTPQEQEIVRDGIRGRFRKVKKDRGRADPGIE
>NC_015850.1|WP_041636196.1|1193370_1194522_+|hypothetical-protein
MPLQGAALAGCSPCRLQGLPPARPAACKACRRQGPLREANRLGGFPMQLRRILFPLFPALALWCAPIAHADPLSAMQADAQALDAMAQTWPQLQSAAQSYGQLAPYASAMWAGPGPVVTTPWGYREQCHNTRWDTTTQYLVTGGLNIGGDAEAEAYAIQAVATDFQEQLSQYLVTLAQSGNPQEEALANEILAQKGPLLQSLDTLTALLNTTANQLSDAMGPSTDLQPLPISHWQAGIGDAPNLAQVRYLPGPNDGAPIGWYAGMAPSSIWIRLEDICPTGTASLPTLPLKARVEQAVQQALVDEPSLGQVVQPLESGSTWTAPALFSGFGGVGPNPVRERLVAALAADETGIAGYMAPISGPLSQYNGEVQRILKEVASGDD
>NC_015850.1|WP_041636199.1|1195039_1195774_+|conjugal-transfer-protein-TrbJ
MLVLPVCADAGGGLTGGATLPEQIVQEATLIQSKISGAERLVEQIQQYENMVQNMVTLPQTLMNQVLQPVDQLYGLVSQAQALTTNAINISQQFQNLNAGFNPQITAEYSSQYESISQGLNNALNTLIQTAGLNPNDFANQAQAQQAIANAMANPNSRNALLQGAVAVGQQTTASLTQLYNLTRAEAQTEADWRKAQLEHTTHQDELNQTGSQMLFGSNPLDERITTHGGTLNATSNALTASVN
>NC_015850.1|WP_014002707.1|1195783_1197685_+|P-type-conjugative-transfer-protein-TrbL
MKKYGIWCLFLLLGLFVSPDVLAAPAPSINGSGAGVILNAFDSETLRWYQSLKADAEEIFYMLFGLDFVYLVSQWLIGGKDVHEVFTSFIKKMMSFAFFYTLLLNGHKLIGWVENGFQQSAIQATGASGGLLSWIFGTASKVFMACLVGPRIPDKSTGVLESIWQTITGGPTVLLSDILGMLVGLVVGIIALLAMIYLALEYIAIQMEVAMVASIGIILMGFAGSRWTVQHAEGYLKYALSVGVRFLVILLWIGFLQKSAGTVITQILSQVNSNHPTANLSGAVVAYGEVLIFVLLIAWMTKKLPSIASSIMSGASSLSGGSEGTALLAGAAIAGGAGLMGGAALAGRGGAGVMTGAQAANMGGAAGELKGAGGGGAFPGGGGGAGTSAGMSAGGSGGEAAGGFYPGAENAVQAPEPSKQQQDIGLAPTAEQIQAAMQKYPTPPARPAGGSAGQGARATQGAGGSADLGAGTKSGQTASLTDGSGVQANQGTADGSVDSGASASASQSPEVTQGAGGSGAAPSKPASGGGTSASQETPTTSATPSAGQQAPTPREALRAALQQSIQQAFAPMQESLGKLNDTLAAGQHEKPEGFKDRLERYQRIHGLAETLLSPGEAEEASVQAANHGLKHSE
>NC_015850.1|WP_014002708.1|1197764_1198025_+|hypothetical-protein
MSFNTKLFLFWLAGVVIGPVVRAALPVAGLWIYAVWVGGPIVFWAIRAFFTMDLGTSNYSHMDIQKARKKGRQQGYNNGYNNGRNS
>NC_015850.1|WP_014002709.1|1198176_1200771_-|DEAD/DEAH-box-helicase-family-protein
MFRRLDYQERALSTLDTYLDALKENKIRADQVAVLAKQNPGLGLPIPDFTKDAWEAMKVAGKLPTSRAAIPFSPRKDGCNRPVPNVVLKVPTGGGKTWLAVSAVSRVLGRYLDRNVGFVLWIVPNEAIYTQTLKHLKDRQHPYRQALDNAAAGRVRILEKTDRLDARDVESNLCVMLLMLQSANRETQDSLRMFQDRGDVHGFFPPEGEQQAHKAAIELTPNLSAYTGLFPMVQDSLGNALRIIRPVVVMDEGHRAVSDLAFNTLYGFNPCFVLELTATPRDVQPRGGRNPREGRYANVLVEVTGRELDREGMIKMPLNLDPRRGNDWKATLNAAVTKLTALADEAQKLRADTGRYIRPIMLIQVERTGSDQRESGHIHAEDVKDWLLTMGFDPAEIAIKTAQQNDLSEPENQDLLSPTNRVRAIITKQALQEGWDCPFAYVLCSLSASANLRAMTQLVGRILRQPGALKTGIDALDECHVITHHADTASVVAAIKEGLEEDGLGDLVLHLTQDDRSESGNRTRTINRRPEFATTEIYLPKVMVLENGEARDLDYETDVLSAIDWRDFDPKDIAERIPENAQTAESQLQRIMLSDNGEECFVGKTVAASTETLVFDTAYAVRMISDIVLNPFVGREIVGALLDALRKRGFDETRLGQLASLIVEELRNGLNQERHKRAETLFKTEVAAGRIQFRLRLDGHNWRMPFRIETTEPEDARQLLNRSGGALEKSLFAPVYENELNSDERDVAIYLDGEKTLRWWHRNVARKQYGIQGWKKAKIYPDFIFAVQNDGKTRKITVLETKGDQLDNLDTAYKREALYFLSRHFRWDETTTVGELELVNGGETVECRLILMSEWHAKLPECFS
>NC_015850.1|WP_014002710.1|1200775_1202491_-|site-specific-DNA-methyltransferase
MTELVFKGKEFVYNHHLAVPFRPLVPHPEKGIGPVALDGNLIIHGDNLHALKALLPLYAGKVDCIFIDPPYNTGNEGWCYNDNVNAPMIRQWLEANPVGIEDGLRHDKWCAMMWPRLRLLFDLLSNDGVIFICIDDNELYSLRLMLDELSQSSSNWIGTIVWKNVTDNNPTRIAVEHEYIICFSKDKNSVEKIWKSKLSDVKDLLVRIGSEFAVEHPDPEEMQAAYTAWFREHRNELWPLDRYKYIDADGVYTGSQSVHNPGREGYRYDVIHPKTGKPCKQPLMGYRFPEETMHDLLAHDKILFGEDHEKIIELKVYAKDFLDKLPSVIELDGRNAAYELRQLFPEQKKAFDNPKPTQLVDKILSYATRKDSIVLDSFAGSGTTAHAVMNLNQKDEGNRKFILIECENYADELTAERVRRVISGVPNSRGDEYKTGLGETFTYCTLGDPIELDKVLTGENLPPYAGLGAALFHMATNHALDPSALREDDFYLGSTAGQHVWLIYKPDLDWLKSPEAALTLARAKAFAAMDPDKKHLVFAPARFVSQKMLAEQNIPVEFVPLPFALYRIDRS
>NC_015850.1|WP_014002711.1|1202804_1204517_-|DUF2326-domain-containing-protein
MRLICLSCDRPSFKPLVFRPSGLSVLVGDAQQEQGSSNGVGKTLALRLVHHCLGAHPRQELKHGVGDWRFALEFEIGAQKHRIERNGDGSDITIDGESLSVRLVRDWLNCHGPFVLPQRGGLTFRSLYRRFARVERQDLLDPVALGHEEKHQGLVHTLYLLGLDIDLALGKIARRERLLQLDANLKLLAQADSRLRDLLRTGMATQAQIAELKRNIDEWQRRLDAMQVADDYEQVRQDAQRFTEALRQHEAQLARIDFQLKGIERALDRRPDITREALLSFYRGLEHVFKPEMLAHFEAVESFHRSLAEQRQRRLERDRIALTQQRQRIEQECREAARQRDEALAYLGRHHAMDDYVAVAQRLAQMRADVERLCRYEDAKSAWERERIEIQEQDAEDSRRASDYLATRPIDWADRRYREMIHTLYPNEPCGITLENNLNPNNKLRYNLAVQVQSQNSDGINAVRVMAFDWLIYRYGAHHTMRHLWHDNGLFDPVDPHQRAAWLSLTMRELQASDMQYIVSINTENFASTREMLSPQEAQALDEAVIVRLLGDADEHKLLGVRFGVGSRTA
>NC_015850.1|WP_014002712.1|1204513_1204807_-|hypothetical-protein
MIFADFLTQSIETHLELAVAPHEHIRFADSLVGLAGYVRTLLADAPRTLDELLAQLERPDSLLPSRPDMGELALAVTLLYAIGAARLTDGDRVELVA

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Crispr_ID: NC_015850_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015850_3

1234131-1235255

Unclear

I-C,I-E,II-B

Consensus_repeat	Method
GGTTTTCCCCCGCGCACGCGGGGACGAC	CRISPRCasFinder
GGTTTTCCCCCGCGCACGCGGGGACGAC	CRT
GGTTTTCCCCCGCGCACGCGGGGACGAC	CRISPRCasFinder
GGTTTTCCCCCGCGCACGCGGGGACGAC	PILER-CR

18 spacers

cas6e,DinG

The CRISPR arrays of NC_015850_3

>merge|NC_015850|3|1234131-1235255|CRISPRCasFinder,CRT,CRISPRCasFinder,PILER-CR
GGTTTTCCCCCGCACATGCGGGGACAGCCGATTATCCACCAGATGGTCTGCTACCAAATCGGGTTCTCCCCCGCGTACGCGGGGACGACCCTATTGGCCCGCGAACCACCGAGCCACTGCATAGTTTTCCCCCGCACACGCGGGGATGACTTCCCAAAATCTCCAACAGAGACAACCCCGCAAGGTTCTCCCCCGCACATTGCGGGGACGAAAGCGCAGCAAATGCGAAATGCGGATTGCAAAAAGTTTCCCCCGCGCACGCGGGGACGACCCATCGCTGGAATGGTGTGCATGAGCCGCGTACGGTTTTCCCCCGCGTACGCGGGGACGACTCCTCCACATGGCGGAATCCAGGGAGCTCAAGGCGGGTTTTCCCCCGCGCACGCGGGGACGACGATGATTGACCGGCTTACGTCGGAACGGGTTCTCCCCCGCATACGCGGGGACTGACGGCTCAAGCTGCAAGGCCGCGGGCTGGACCCCAGGTTTCCCCCGCGCACACGGGGACGACACGCCACCGGCTGCGTTCCGCGCCATACTGTAAGAGGTTTTCCCCCGCGCACGCGGGGACGACGGTATTATTCAAGGTCGTAGACGCTTTCATGACGGTTTTCCCCCGCGCACGCGGGGACGACGGCTGGTGCTCGGTAAGAATTTCCCACAGTCGCGGTTTTCCCCCGCGCACGCGGGGACGACAGTGCGTCGTCTGGACTTATCGCCTCATCTTCGGGTTTTCCCCCGCGCACGCGGGGACGACAGAACAGAGACCCCAGAAACACCCTGATATCGCGGTTTTCCCCCGCGCACGCGGGGACGACGCGGCAGATATTCCAGCGCCGCGGACTTGGGACGGTTTTCCCCCGCGCACGCGGGGACGACGGCATCCACCATGCTACAGAGGCTTGGTATGACGGTTTTCCCCCGCGCACGCGGGGACGACCCCAGATTCGTGTTGCCGGTGGCCGACTTGTGGGGTTTTCCCCCGCGCACGCGGGGACGACGCAACCAGCCGTTAGCGCGGCCAGCCTGTCGGCGGTTTTCCCCCGCGCACGCGGGGACGACTGGCCTGCGTGGTAGTCGCTGTCCAACTCGCTTCGGTTTTCCCCCGCGCACGCGGGGACGACT

>NC_015850|3|3|1234131-1234281|CRISPRCasFinder
GGTTTTCCCCCGCACATGCGGGGACAGC	CGATTATCCACCAGATGGTCTGCTACCAAATCG
GGTTCTCCCCCGCGTACGCGGGGACGAC	CCTATTGGCCCGCGAACCACCGAGCCACTGCAT
AGTTTTCCCCCGCACACGCGGGGATGACTTCCCAAAATCTCCAACAGAGACAACCCCGCAAGGTTCTCCCCCGCACATTGCGGGGACGAAAGCGCAGCAAATGCGAAATGCGGATTGCAAAAAGTTTCCCCCGCGCACGCGGGGACGAC	CCATCGCTGGAATGGTGTGCATGAGCCGCGTAC
GGTTTTCCCCCGCGTACGCGGGGACGAC	TCCTCCACATGGCGGAATCCAGGGAGCTCAAGGCG
GGTTTTCCCCCGCGCACGCGGGGACGAC	GATGATTGACCGGCTTACGTCGGAACG
GGTTCTCCCCCGCATACGCGGGGACTGA	CGGCTCAAGCTGCAAGGCCGCGGGCTGGACCCC
AGGTTTCCCCCGCGCACACGGGGACGAC	ACGCCACCGGCTGCGTTCCGCGCCATACTGTAAGA
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGTATTATTCAAGGTCGTAGACGCTTTCATGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGCTGGTGCTCGGTAAGAATTTCCCACAGTCGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	AGTGCGTCGTCTGGACTTATCGCCTCATCTTCG
GGTTTTCCCCCGCGCACGCGGGGACGAC	AGAACAGAGACCCCAGAAACACCCTGATATCGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GCGGCAGATATTCCAGCGCCGCGGACTTGGGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGCATCCACCATGCTACAGAGGCTTGGTATGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	CCCAGATTCGTGTTGCCGGTGGCCGACTTGTGG
GGTTTTCCCCCGCGCACGCGGGGACGAC	GCAACCAGCCGTTAGCGCGGCCAGCCTGTCGGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	TGGCCTGCGTGGTAGTCGCTGTCCAACTCGCTTC


>NC_015850|3|1|1234131-1235254|CRT
GGTTTTCCCCCGCACATGCGGGGACAGC	CGATTATCCACCAGATGGTCTGCTACCAAATCG
GGTTCTCCCCCGCGTACGCGGGGACGAC	CCTATTGGCCCGCGAACCACCGAGCCACTGCAT
AGTTTTCCCCCGCACACGCGGGGATGAC	TTCCCAAAATCTCCAACAGAGACAACCCCGCAA
GGTTCTCCCCCGCACATTGCGGGGACGA	AAGCGCAGCAAATGCGAAATGCGGATTGCAAA
AAGTTTCCCCCGCGCACGCGGGGACGAC	CCATCGCTGGAATGGTGTGCATGAGCCGCGTAC
GGTTTTCCCCCGCGTACGCGGGGACGAC	TCCTCCACATGGCGGAATCCAGGGAGCTCAAGGCG
GGTTTTCCCCCGCGCACGCGGGGACGAC	GATGATTGACCGGCTTACGTCGGAACG
GGTTCTCCCCCGCATACGCGGGGACTGA	CGGCTCAAGCTGCAAGGCCGCGGGCTGGACCCC
AGGTTTCCCCCGCGCACACGGGGACGAC	ACGCCACCGGCTGCGTTCCGCGCCATACTGTAAGA
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGTATTATTCAAGGTCGTAGACGCTTTCATGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGCTGGTGCTCGGTAAGAATTTCCCACAGTCGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	AGTGCGTCGTCTGGACTTATCGCCTCATCTTCG
GGTTTTCCCCCGCGCACGCGGGGACGAC	AGAACAGAGACCCCAGAAACACCCTGATATCGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GCGGCAGATATTCCAGCGCCGCGGACTTGGGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGCATCCACCATGCTACAGAGGCTTGGTATGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	CCCAGATTCGTGTTGCCGGTGGCCGACTTGTGG
GGTTTTCCCCCGCGCACGCGGGGACGAC	GCAACCAGCCGTTAGCGCGGCCAGCCTGTCGGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	TGGCCTGCGTGGTAGTCGCTGTCCAACTCGCTTC
GGTTTTCCCCCGCGCACGCGGGGACGAC

>NC_015850|3|4|1234374-1235255|CRISPRCasFinder
	CGATTATCCACCAGATGGTCTGCTACCAAATCG
GGTTCTCCCCCGCGTACGCGGGGACGAC	CCTATTGGCCCGCGAACCACCGAGCCACTGCAT
AGTTTTCCCCCGCACACGCGGGGATGACTTCCCAAAATCTCCAACAGAGACAACCCCGCAAGGTTCTCCCCCGCACATTGCGGGGACGAAAGCGCAGCAAATGCGAAATGCGGATTGCAAAAAGTTTCCCCCGCGCACGCGGGGACGAC	CCATCGCTGGAATGGTGTGCATGAGCCGCGTAC
GGTTTTCCCCCGCGTACGCGGGGACGAC	TCCTCCACATGGCGGAATCCAGGGAGCTCAAGGCG
GGTTTTCCCCCGCGCACGCGGGGACGAC	GATGATTGACCGGCTTACGTCGGAACG
GGTTCTCCCCCGCATACGCGGGGACTGA	CGGCTCAAGCTGCAAGGCCGCGGGCTGGACCCC
AGGTTTCCCCCGCGCACACGGGGACGAC	ACGCCACCGGCTGCGTTCCGCGCCATACTGTAAGA
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGTATTATTCAAGGTCGTAGACGCTTTCATGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGCTGGTGCTCGGTAAGAATTTCCCACAGTCGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	AGTGCGTCGTCTGGACTTATCGCCTCATCTTCG
GGTTTTCCCCCGCGCACGCGGGGACGAC	AGAACAGAGACCCCAGAAACACCCTGATATCGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GCGGCAGATATTCCAGCGCCGCGGACTTGGGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGCATCCACCATGCTACAGAGGCTTGGTATGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	CCCAGATTCGTGTTGCCGGTGGCCGACTTGTGG
GGTTTTCCCCCGCGCACGCGGGGACGAC	GCAACCAGCCGTTAGCGCGGCCAGCCTGTCGGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	TGGCCTGCGTGGTAGTCGCTGTCCAACTCGCTTC
GGTTTTCCCCCGCGCACGCGGGGACGACT

>NC_015850|3|1|1234677-1235254|PILER-CR
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGTATTATTCAAGGTCGTAGACGCTTTCATGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGCTGGTGCTCGGTAAGAATTTCCCACAGTCGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	AGTGCGTCGTCTGGACTTATCGCCTCATCTTCG
GGTTTTCCCCCGCGCACGCGGGGACGAC	AGAACAGAGACCCCAGAAACACCCTGATATCGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GCGGCAGATATTCCAGCGCCGCGGACTTGGGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	GGCATCCACCATGCTACAGAGGCTTGGTATGAC
GGTTTTCCCCCGCGCACGCGGGGACGAC	CCCAGATTCGTGTTGCCGGTGGCCGACTTGTGG
GGTTTTCCCCCGCGCACGCGGGGACGAC	GCAACCAGCCGTTAGCGCGGCCAGCCTGTCGGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	TGGCCTGCGTGGTAGTCGCTGTCCAACTCGCTTC
GGTTTTCCCCCGCGCACGCGGGGACGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015850.1\|WP_014002737.1\|1233643_1234111_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002743.1\|1239006_1241187_-\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_015850.1\|WP_014002732.1\|1223798_1224044_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_041637051.1\|1237104_1237494_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_015850.1\|WP_014002735.1\|1226534_1230521_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|365992
NC_015850.1\|WP_014002734.1\|1225634_1226216_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NC_015850.1\|WP_014002730.1\|1220443_1223020_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|237540
NC_015850.1\|WP_014002741.1\|1237556_1238339_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002733.1\|1224244_1225432_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|238082
NC_015850.1\|WP_082177297.1\|1242905_1244369_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223931
NC_015850.1\|WP_014002729.1\|1219520_1220159_-\|antA/AntB-antirepressor-family-protein	unknown	unknown	gnl\|CDD\|369825
NC_015850.1\|WP_014002731.1\|1223309_1223735_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002744.1\|1241497_1241722_-\|superinfection-immunity-protein	unknown	unknown	gnl\|CDD\|379585
NC_015850.1\|WP_014002742.1\|1238338_1239022_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002739.1\|1235294_1236269_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274435
NC_015850.1\|WP_014002747.1\|1244361_1245060_-\|acyltransferase	unknown	unknown	gnl\|CDD\|238878
NC_015850.1\|WP_014002745.1\|1242009_1242900_-\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|183262
NC_015850.1\|WP_004872847.1\|1241752_1241989_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_148262198.1\|1226215_1226425_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002736.1\|1230513_1233429_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015850.1\|WP_014002744.1\|1241497_1241722_-\|superinfection-immunity-protein	gnl\|CDD\|379585	pfam14373, Imm_superinfect, Superinfection immunity protein. This family includes the E. coli bacteriophage T4 superinfection immunity (imm) protein. When E. coli is sequentially infected with two T-even type bacteriophage the DNA of the superinfecting phage is excluded from the host, into the periplasmic space. The immunity protein plays a role in this process.	1.04301e-12
NC_015850.1\|WP_014002729.1\|1219520_1220159_-\|antA/AntB-antirepressor-family-protein	gnl\|CDD\|369825	pfam08346, AntA, AntA/AntB antirepressor. In E. coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the bacteriophage 933W.	2.20547e-19
NC_015850.1\|WP_041637051.1\|1237104_1237494_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	7.30836e-09
NC_015850.1\|WP_014002734.1\|1225634_1226216_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.04952e-54
NC_015850.1\|WP_014002730.1\|1220443_1223020_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|237540	PRK13880, PRK13880, conjugal transfer coupling protein TraG; Provisional.	0
NC_015850.1\|WP_014002743.1\|1239006_1241187_-\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	6.18619e-40
NC_015850.1\|WP_014002733.1\|1224244_1225432_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|238082	cd00140, beta_clamp, Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. .	1.23809e-32
NC_015850.1\|WP_082177297.1\|1242905_1244369_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|223931	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair].	6.42478e-05
NC_015850.1\|WP_014002739.1\|1235294_1236269_-\|hypothetical-protein	gnl\|CDD\|274435	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf2 (CRISPR/cas Subtype as in A. ferrooxidans protein 2), as it lies second closest to the repeats.	1.24961e-08
NC_015850.1\|WP_014002747.1\|1244361_1245060_-\|acyltransferase	gnl\|CDD\|238878	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.	3.44952e-33
NC_015850.1\|WP_014002745.1\|1242009_1242900_-\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|183262	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional.	6.50435e-32
NC_015850.1\|WP_014002735.1\|1226534_1230521_-\|hypothetical-protein	gnl\|CDD\|365992	pfam00271, Helicase_C, Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.	3.95958e-10

>NC_015850.1|WP_014002737.1|1233643_1234111_+|hypothetical-protein
MEKRSHHEWVHLPYRRGVQILEENGVRVLGQTSATRSAWAGISHAEGQPLQVYGILLVEHDQEHLQVHAAFFRRIGQRDKIRFLSRFFQQAFARWVECDHFSLSESPVVHLGHSPKGIMLTRDMDLPTWIRGRLAKPGRAVCRGKDEGTLRRKTA
>NC_015850.1|WP_014002736.1|1230513_1233429_-|hypothetical-protein
MSAVLELSRDHYPYPVKSILQYLDTLPKERLATCIQYGNGCFTLRVPRDIILEAAGLSGIQIPRKASAFGEDMDMEAKDLQKILSRLQGNITEIVEAMEGLDEVLTDPSGEPVSCTWELQASEARLEPMRGAIPANAAGVLLLVRETRDRTFESRLVENLKQRLMDPYSGEEMDEYEAQSTIDAAMRLDISQSFLSFLRETAISRSRIGIYNKLANRTMKILQESGKRAGFDYLKTILDFQRAVIDRPEAFRFSGKPDYGAEGMYTEIYKLAFHKQLPIWFTSRGILGSASDADEDLVSYAFRVGGENPQTGRLAIEDRLITMARERETGDNAYLPPLIVYAMLFDDTLKHLAPQEAFERIMGVSTQTILHRFVEKRSGNWEIRPEVHRKIQQQMRAIRNDLLYAWSISKGSSINKYFANLQSTQETADIRITIPWSLANVENIRDGIVTNYRLKDENRNARWLRDIQVVSADDNSRDRWFDIQVKISPAIQWIQPDGGTHHTQVRRVPSENQKILRLTLQSFPDEAANGDRTENKRYLDSERNSRMVVLAREVPEKSKTNKDNLDKACAAFFVENLLLEHFLLAVVKRLEKMTGSTIAVEILRLQQGNWEQFGSQRLYALGHLLEHRLASRTPVFQQGFDMGNKQNESYRKNRARALASYAYPMEMEAALKDRTVVIHLARYALDGDTQQAMATLFVADPSPTGVDHTVDRFRYQHARTLYRSSRDRNHASLLAEGWVLGDALQSARDLGATNILLVLSADGWKRESRGYDQGANQNLGALYTVAEKYCGPTLVVPMLYRHHLMFYRKGEKRGDVLILDGVNAWSGKTAVLDTVSGGGTDRLRLIPVQGLATLRTVQDGLQRGLMAYAFPYLDQPYTSAKQEMARFASVERHGWVHRVLLAHHAYRYEKIGLQGDRRPSISAMKNEPPVKLDPWGMTKIEDRGWQKLAGVTVDWLGLLSKIGYQGDLTNA
>NC_015850.1|WP_014002735.1|1226534_1230521_-|hypothetical-protein
MLDTSQRSVLGWIYEISVKSGFWETLCAKNALFAGKMDEAWRLSWKKHLQIQEESGSRLFSDGAREVLDQYLRFLWPLGHLHGQQLAIDLESTTSIRWDIFNLVRLFCPFPNFPSTDDVEKEKHVRLLREAFDLPEEVHVDTGRGKLPNADLAIAWLGKNPTRIVIDFSLYTGALAKGAREMVSPEGFWIGNLPADAMSIPIWKQCERQLQVSPFAATHTLGVTKAKVEDHLLLFYDLFSGKEKSFYKTCQSASYLSHWCDIDTPRPGTRLIAGAYTVFGLEMLGARWENGKMTDPLASLRDFYPKLYQKNRTENKAQAIVERESATSIVLDRTRKVLRFPKKRFSGQVERILSAEYFGTEDFQARETFWARPCDDLAGESEQIHTQNAFCNPASGLDHPLIQEALKDYVWWNPERRQESFRDLHADALQYGFATMHQPSPGAEKENLSITFALAHPGAGKTTTIVRTVLESPAPCVFLYASPRVSINDNVIAQIQKHLIESEEPVESAIAVTTNHEINALASHFSCSDGGVPSGLLAYHNWDSPVTSFRGIAYEPMEAIEALRSDVQKMEGASIRVEDKDERRRSVRKHRTNAPSVLKTLFDGIEGLLAPGRLSESVRIFLASVSLQAFRGDRWEQSARGFLDTIGPQLLRRVGDSGLRPRIVLFVDEVTGSGEGLRIVRSMIQLARDTAAKYPGVDVHVIVADASLIHVDVLRQWLESDSGDFPACVLQDAGSTNLPVFRRLDWQDGPTRYGPATVVEASAYPAGRLDVNYRIRVGEPDRRENAGSGQQDRSLRISFLIDTITEVFRGCPDGQQVLVFVQDKKLLEDMENSLKENLKLSSQQIRTLSADVPPKMRREILEDQGKNIRILLMTSAGSRGLDFPKVTRYVINVDHFSPETTLLEVQQVLFRGRGHGCDGLDRQVYFTMSGVFDKYDLSHEPVWGEGGTQELQMQLHLKSFLMDRLLMMVMLRSTLLTRACGRSRMERYSDSGNLTDTLFCPLGETGSTNPAVQLADILIRGKKAMENLRNRNLIEHGSHTNFMRYFAEVFHQRSVSVRLNHSRNEQAVWARHPVLAFLDDRISTVFIEQSGRDTSSLAEREFWRKKFTDLSPLVCTSDTRIVLGDCPGGAVWVRGFLLILEIKEAHLLLRQDMRTSESKKRLHNLLVAILKKIREVSGKKERIRDSYRAIHDLDRLLEEDGNAPRLEKEILGEEPGEILLVTPFTPPWVQVATDPESNDAFPGDFPWPSYLTGASNLLDRRSDNRWPMLTVEDVAERYNLVPDSQGAEPYEYAPFALVFSANTGKPLRILKRVQTTRGFQLLTTALPS
>NC_015850.1|WP_148262198.1|1226215_1226425_-|hypothetical-protein
MNNPHVQEQNPGDRCPVCGRRDWERGGWYRLADRKTIHVLRCRNCRTVQRVPHHRFFQVAATSGQEFIR
>NC_015850.1|WP_014002734.1|1225634_1226216_-|lytic-transglycosylase-domain-containing-protein
MLPIDSLIAQCAPFVAPKTMSAIVRVESGGNPLAMWNNTTHQRILPPNRAAAVAYLQGAMAAGQKVDVGIAQVDTENFAAYGLTPETAFDACTNLRVGAQILQSDYARAAARFGPGQVALYHAFEAYNSGHLWGDAHYANAVLRSAGIPVYVQSSGKLVYRPLATVFSWSTAPTVSAASPSRASGLAAYVLKW
>NC_015850.1|WP_014002733.1|1224244_1225432_-|DNA-polymerase-III-subunit-beta
MERQLSIDTLRKIATASAALVKGNSVQPIYDHVLIEDQRVVLGNATTQLEWFLDEEERSFGFAPEAYPARDLERIAKSLPDGAQVQFGEQGQIRCGRSRFRLPVYDGAQYPVREEPLPSAWIRVQTQDLERIFPSLRRCVAKNDTRTYLNGIHWQIRRVGEQESLLVLEATDGHRAARFSLEYTPPLDSAHSPSGASADTEPSVPTLDAILPVEGISAWMKLLSSRKIAEFSIAQIRSGVLFQGGGLRLWLTSLDGRYPSLDTILAQLEKRKDVLSLSIADFQRALTLATIGVGENQVVTLSTAPEHLLSVAAKGEERQAEDQIPAQWSGSLPLRYSFNIQYLMDVVDSVKETTKGSEDTEDPHMALRFDVSEKDPTSTFAEVPGGVLVVMPIRE
>NC_015850.1|WP_014002732.1|1223798_1224044_-|hypothetical-protein
MSWPLFVLFLYAFGTLVVYLLATHRTGEYFGLLLKPKSFSFLYAVLEVLMRIVIGCLSGLFFLLSFMLADNVFRSFLDILS
>NC_015850.1|WP_014002731.1|1223309_1223735_+|hypothetical-protein
MVYVDTAGDSFLSSALLDIEDRPDALLLGPDYFPVSALDDFWSHSGVAYLDASKAPHSERHLRLQAWLQEFADFLIVRRERRICPDNVQVLVVVDELVPPLQDVAALLARIARKSSVHFMATMVIPHWGEDVACHNLLDKI
>NC_015850.1|WP_014002730.1|1220443_1223020_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MASVVHRPEQNILDYRAQQRIRNAPTLGLFATAMTGFFASYLGASLGVHIAIPEIYDPNFFPGYVAKPFFGLPIFSPWELGKMAYAEWQYPMMQKATEIACAIATVPTLAMGIWQFVRSQRLWQSQYQTDLHGSAHWASRDEIVKMALLPEKGLHPAKGLHPAKGQKPSKRVCYVGGIPNERDETDYLQHAGAEHIICFAPTRSGKGVGLVLPTLLGGWQESVVVHDIKGENYLLTAGWRKSIGQKILKFNPGFGMAADPLNGMEADNNGDLGTKEQCCHFNPLEEVRVGTPFEVKDVMNIATMIVDPDGKGLNDHWQKTGFALLTSVILHVLYAEPDKTMRGVAAFLNDPELEDVDQAFDKMMDTQHRPSNPALLKQWTTLYGNATVHPAIAQSAKEMKNKAPNEKSGVISTMMSFLSLYRDPIVAEWTEYSDFHITDLQDADAPVSLYLVTSPEDKNRLKPLIRLVINLIASKFTAEDRLISKDGRMICKGKHPLLLLLDEFPSLGKMDIFQDAIAFFAGYNVKLFLITQSKSQLEDEGRGYGKSGGSVIIENCHVRIFYAPNDVTTAEWLSKMLGKKTVVMENVTQSLEGSVLPSPKGQSRSLNYQARDLLTPDEVLRLRGPIKNGSNIVKAGDMIVMVAGFAPVYGRQILYFKNPTFLERAQIPPPATSDEISARAKDYYAKLLGHDKPTSIESTKPDFDTFEESDYTDSPPAGSSAAHDSAGPAGGGPAGPADSNTPPEGGLAGGGPADGTSDPRSSAPRSGDPRSGDQGGGGGGLDTGTILEEGADEDAEDGTLDMDVSDSITDLTDIRASFIEKLPARLLEASGGADAWMQDTQRLDRRADKSELSGMLKG
>NC_015850.1|WP_014002729.1|1219520_1220159_-|antA/AntB-antirepressor-family-protein
MEDLFPVVRREIGGEEVFVVNARELHAFVMSRDRFATWIKERIKQHSLVENVDFSISTCSAGGKGSAGGRPKTEYHLSLKSAIFIVAQEKNSRPLVVQKFIESVQDVCALWDAIRNIELPEDIPQPMYVYAIKNPDTGNIKIGISKDPEARLKQLRVGNDADLRLVLVEKIEAPDRFQDERFAHLKNQYLRIRGEWFRSGARLTTQNRKTVT
>NC_015850.1|WP_014002739.1|1235294_1236269_-|hypothetical-protein
MSMLETLDVSGKLLAVSPIAVSPPGSAFSSDDKGAPQRLPSVGKNRYLPASTFRHVLRYGAIRVVQEALKAQGKSLSLDALLMLDKGFFAQRKKDKGNPQGRSNGKTKAKDVLRMEQEVREKNPLLGLFGVWTIPSMLRVRNAFPLPNAQGQTYTVASGLVRKALEEDLVDALTKDEAEDYLQRLDDWSEADKETTGLKHISERPWEEIVAGVECEWGYQIHRFTPFQSGAVLAGLRYFAGDPVIGAHKAVGRGELALDLNASVIRQDILNGPQSEEAGTLTLRRGEFRVDGLLAEHLSEFDRLAKAGFPGMDFHCLPALVEGE
>NC_015850.1|WP_041637051.1|1237104_1237494_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MDDRDFLFAPYGESIVFRSRSEPLPDTHEVWRMRSLLAPVMRREHRERVVKPREFRGWLASLLERHGWVLRSIEQVEPMEMTIRHGRRLTVVDTVFTAQVVDRENADRSYRSGIGRYKAFGCGMLIPQG
>NC_015850.1|WP_014002741.1|1237556_1238339_-|hypothetical-protein
MERTPLQEAVWFFYERLGHRFPAPDWGEQREDVCSICGTEGRGYDDNRPNHRVFRCIACTAFYAPAPDHFLTTGKDRSFAGIVKNPWVLDANGRFRSPIGKASRKDDAFVVNARAHGMDFYSAENPFQTLYRGIYDGEFAFPLLFVRLGQNKIESMRMMRLSTSDMLFFWDKSEMRAFDLALVREAGRLPLGEKPWSDWARWGIPEDLAERVRFLKDVRGKAPFRVLTMHGDNRLFLRQVVDREAGEKTKAEKKKRSRKQ
>NC_015850.1|WP_014002742.1|1238338_1239022_-|hypothetical-protein
MHYVLKVRCKTPIAMGKAGFYSGLDAVLLHRLCLWTGGDTDAARERMPLERDGELWACGGGYNPQDALFLSRTAPRRVPVFRLFLRDGGFREMAALPPDELQTEINAFFGQETEATGDAYAVVRNARELHFRFRSTDPERVLYLLRVEPFLGPGHSVGWGEIERVDLEEKGETDALWVYTDPLNRLTRPVPMDWTDVDGQESLSALEAPYWSMPKVPARVPYPVGVR
>NC_015850.1|WP_014002743.1|1239006_1241187_-|ATP-dependent-DNA-helicase-DinG
MSKLFTLDRFAGAGLRLRSLQIRVAQDVDHCLAEPLPEPEAITSRDGEALSCRRSLCGFIEAGTGVGKTIGYLVPLLEYASQHKKRVGISTYTRFQQRQVAKDLALVQQRIFDGLDLQVAIRLGRQNFVSRERVAFWRERLKGTDLPKAWEDFFAWVDRWDESTDPLDTTFLAWREIYPDMPEFSGLAEEDFALREDEPHAWYEAHAKAAQSADVVITNHATLLIHGALKTGLLGDLDAVVVDEADRLISAAQSLLSRRLRASLVVRDLRRQYPDPREFDFAEARQEADAIQDLLRDLGETLEYRDTLLSDWPARFPEENAALRGHLERLVPLLPSPSARRDFQRVLAGLDGGETVDVVYSPIRHLPAFHIDDLEPERFVGKLFVAFGEDEVFLPRVVLVSATLSDPMTEKLDFVHQTFGLFRRPFLTSRYEPDRFGSMTFVLPDPRVGAPFLVDDEDLSERMWNPEWLAYVENALGIDDHRKLLLTPSFEDIARWMERRGLEVGKTRLHEGILYHQSDVPGAKLVQRIEQDPDVRVVITPSLWEGVNLRLDGKPWMQDVLIARVPIPPYSPLLQERKIAWRLARQAEQARKKRERGEKAVWRTEEELRAELVWESAKKALRRLRQGLGRGIRDERDTVRVWMLDPRVLFPTDALNGLLFVAAGLEDGEDLVQAAEKIPVHPALRRWSQSVPARFRGQLSNADIFLRDGTLSSLVESEGALLCTTC
>NC_015850.1|WP_014002744.1|1241497_1241722_-|superinfection-immunity-protein
MITLFILIAILFGAALYFLPTILAYLRKKSNLVAIFAMNLLLGWLFVGWVIALVWALSNDSPTTIIVHSHKDEG
>NC_015850.1|WP_004872847.1|1241752_1241989_-|hypothetical-protein
MMEADRFLDTQIEVLDIARDMLVKEGLPQDDHHLDLALHALVRGVEIGLMDSQLADRIVRFGAAHARQYPSIGRDYPR
>NC_015850.1|WP_014002745.1|1242009_1242900_-|thioredoxin-fold-domain-containing-protein
MLPVSKKMALWFGWTGFVGMGVLAAGIWTVDLLGTAHAQTNPAAAAANYRPLVDKLSAGRATVLSTFAGPDGLTGLVVGPANGAGPKSIAWGIDGENGPVLIPGPVLDSQGKNLSQQAAERHGVIPKPMAGGKLAQAMLAAPGFTVGTKGPLFTVFLDPNCIFCHDFWTKAYPLAKEGKLRFKVVPVGFLKPSSLPKAVTILQSKDPMAAWAQNEASFNVKTEEGGAKPAKVLDPKVLAEVKANTELLARTGEVATPTIVACLKGDKTPQVFHGMAPGMLTDLGRGASIKGDGTCS
>NC_015850.1|WP_082177297.1|1242905_1244369_-|site-specific-DNA-methyltransferase
MGRNIAKRKVASLTLPLFLEPEAEPQYTIRVGNLLDVLPTLPENHFDGVLCDPPYHLTQNSRRGSVQAGDSGKTPFGRHGVCTDRGFMGQTWDGGDIAFRPETWRAVLRVMKPGSYLLAFGGSRTFHRLAVALEDAGFVLVDTLMWLYGTGFPKSLDVSKAIDKHLGVARPVVGKRKHPTLKNCDLIEEAANAAHGKNFWRREWDVTLPGHADSARWNGYGTALKPAYEPILLCRKPGEKTYAENALKWGCGALNIDGARIPVSESEGERPLREVTCDPDKNGMVYAGRRNAGGGFDGGSRAIGSTSEGRWPANAILDEEAAAMLNTQAGPRKSGAMPKGTLRRARQGNAFGRFPGVATHKDIAASVGNASRFFYVSKVSTKERQAGVTSSEPRYAHGTTLRRIENSEKVGNDHPTLKPIDLTRYLANLILPPSRGDDSRRLLVPFSGAGSEMIGALQAGWDTVLGMEQSEHYAEIARKRLIYWIGG
>NC_015850.1|WP_014002747.1|1244361_1245060_-|acyltransferase
MQKKALLLATALLAIATQAFGASANGTGASVTGATSDRVAMHRIVQDRAVAPQADYAWDRPYCLRYRSRHPDLLILGDSIFDGWSGYLMHVFPRALIDARVGRQFSSAIRIYQSLLAYSGIRSIQTIVVDLGTNGPVTAQQIAQFMMLAGNRRVIFIVPEVPRPWEREVQSLYEGLPAQYPNVQLEYWNRISTLPNGQENPAYFWGDGVHPNWYGIQALVGGLQAVLATRNG

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Crispr_ID: NC_015850_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015850_4

1236314-1236999

Unclear

NA:I-C,I-E,II-B

Consensus_repeat	Method
GGTTTTCCCCCGCGCACGCGGGGACGAC	CRISPRCasFinder
GGTTTTCCCCCGCNCACGCGGGGACGAC	CRT

11 spacers

cas6e,DinG

The CRISPR arrays of NC_015850_4

>merge|NC_015850|4|1236314-1236999|CRISPRCasFinder,CRT
GCGAATCCCCCGCCTACGCGGGGACGAACAGCGAAAAACGACAAGGAAATCGAGACCTGGGGTTCTCCCCCGCGCACGCGGGGACGACCCCGACAGCCAGGTGGTTGCCGGTTTCTCGGAAGGTTTTCCCCCGCGCACGCGGGGACGACGACGGATCCTTACGAGACCTGGCCGCCGGTGGAGGTTTTCCCCCGCACATGCGGGAACGATCGTTCCAGTCTGTCGCTCCCTCGGGGATCTCAAGGTTTTCCCCCGTACGCGCGGGGACGACTAGCCCCGCTTGCCTGCCAGTCCTTGCGCCAGCGGTTTTCCCCCGCGCACGCGGGGACGACCAGGAGCAGGCATGGCTATCTATCACGGTTTTCCCCCGCACGCGCGGGGACGACGGGTTATGGGCCTCGAGAATGTGCTCCTCGCCGGGTTTTCCCCCGCGCACGCGGGGACGACCAAGGAAAATCTCGCGAGGAACCCTCTTTGATGGGTTTTCCCCCGCACGCGCGGGGACGACCGGTATCTTTAGCCTTGGCAACCAGATAGGTTTTCCCCCGCCTACGCGGGGACGACGCCCACGAAGTGGTAAACCACGAAGTGGACAGAGGTTTTCCCCCGCACACGCGGGGACGACCGCCAGAAACGCTGCGCGGACACGTATTTTCTGGGTTTTCCCCCGCACACGCGGGGACGAC

>NC_015850|4|5|1236314-1236999|CRISPRCasFinder
GCGAATCCCCCGCCTACGCGGGGACGAA	CAGCGAAAAACGACAAGGAAATCGAGACCTGG
GGTTCTCCCCCGCGCACGCGGGGACGAC	CCCGACAGCCAGGTGGTTGCCGGTTTCTCGGAA
GGTTTTCCCCCGCGCACGCGGGGACGAC	GACGGATCCTTACGAGACCTGGCCGCCGGTGGA
GGTTTTCCCCCGCACATGCGGGAACGAT	CGTTCCAGTCTGTCGCTCCCTCGGGGATCTCAA
GGTTTTCCCCCGTACGCGCGGGGACGAC	TAGCCCCGCTTGCCTGCCAGTCCTTGCGCCAGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	CAGGAGCAGGCATGGCTATCTATCAC
GGTTTTCCCCCGCACGCGCGGGGACGAC	GGGTTATGGGCCTCGAGAATGTGCTCCTCGCCG
GGTTTTCCCCCGCGCACGCGGGGACGAC	CAAGGAAAATCTCGCGAGGAACCCTCTTTGATG
GGTTTTCCCCCGCACGCGCGGGGACGAC	CGGTATCTTTAGCCTTGGCAACCAGATA
GGTTTTCCCCCGCCTACGCGGGGACGAC	GCCCACGAAGTGGTAAACCACGAAGTGGACAGA
GGTTTTCCCCCGCACACGCGGGGACGAC	CGCCAGAAACGCTGCGCGGACACGTATTTTCTG
GGTTTTCCCCCGCACACGCGGGGACGAC

>NC_015850|4|2|1236314-1236999|CRT
GCGAATCCCCCGCCTACGCGGGGACGAA	CAGCGAAAAACGACAAGGAAATCGAGACCTGG
GGTTCTCCCCCGCGCACGCGGGGACGAC	CCCGACAGCCAGGTGGTTGCCGGTTTCTCGGAA
GGTTTTCCCCCGCGCACGCGGGGACGAC	GACGGATCCTTACGAGACCTGGCCGCCGGTGGA
GGTTTTCCCCCGCACATGCGGGAACGAT	CGTTCCAGTCTGTCGCTCCCTCGGGGATCTCAA
GGTTTTCCCCCGTACGCGCGGGGACGAC	TAGCCCCGCTTGCCTGCCAGTCCTTGCGCCAGC
GGTTTTCCCCCGCGCACGCGGGGACGAC	CAGGAGCAGGCATGGCTATCTATCAC
GGTTTTCCCCCGCACGCGCGGGGACGAC	GGGTTATGGGCCTCGAGAATGTGCTCCTCGCCG
GGTTTTCCCCCGCGCACGCGGGGACGAC	CAAGGAAAATCTCGCGAGGAACCCTCTTTGATG
GGTTTTCCCCCGCACGCGCGGGGACGAC	CGGTATCTTTAGCCTTGGCAACCAGATA
GGTTTTCCCCCGCCTACGCGGGGACGAC	GCCCACGAAGTGGTAAACCACGAAGTGGACAGA
GGTTTTCCCCCGCACACGCGGGGACGAC	CGCCAGAAACGCTGCGCGGACACGTATTTTCTG
GGTTTTCCCCCGCACACGCGGGGACGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015850.1\|WP_014002737.1\|1233643_1234111_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002743.1\|1239006_1241187_-\|ATP-dependent-DNA-helicase-DinG	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_015850.1\|WP_014002732.1\|1223798_1224044_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_148262198.1\|1226215_1226425_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_082177297.1\|1242905_1244369_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223931
NC_015850.1\|WP_014002734.1\|1225634_1226216_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NC_015850.1\|WP_014002730.1\|1220443_1223020_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|237540
NC_015850.1\|WP_014002741.1\|1237556_1238339_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002733.1\|1224244_1225432_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|238082
NC_015850.1\|WP_014002747.1\|1244361_1245060_-\|acyltransferase	unknown	unknown	gnl\|CDD\|238878
NC_015850.1\|WP_014002735.1\|1226534_1230521_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|365992
NC_015850.1\|WP_014002731.1\|1223309_1223735_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002744.1\|1241497_1241722_-\|superinfection-immunity-protein	unknown	unknown	gnl\|CDD\|379585
NC_015850.1\|WP_014002742.1\|1238338_1239022_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002739.1\|1235294_1236269_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274435
NC_015850.1\|WP_014002745.1\|1242009_1242900_-\|thioredoxin-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|183262
NC_015850.1\|WP_004872847.1\|1241752_1241989_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014002748.1\|1245059_1245539_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_041637051.1\|1237104_1237494_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_015850.1\|WP_014002736.1\|1230513_1233429_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015850.1\|WP_014002744.1\|1241497_1241722_-\|superinfection-immunity-protein	gnl\|CDD\|379585	pfam14373, Imm_superinfect, Superinfection immunity protein. This family includes the E. coli bacteriophage T4 superinfection immunity (imm) protein. When E. coli is sequentially infected with two T-even type bacteriophage the DNA of the superinfecting phage is excluded from the host, into the periplasmic space. The immunity protein plays a role in this process.	1.04301e-12
NC_015850.1\|WP_014002743.1\|1239006_1241187_-\|ATP-dependent-DNA-helicase-DinG	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	6.18619e-40
NC_015850.1\|WP_014002739.1\|1235294_1236269_-\|hypothetical-protein	gnl\|CDD\|274435	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf2 (CRISPR/cas Subtype as in A. ferrooxidans protein 2), as it lies second closest to the repeats.	1.24961e-08
NC_015850.1\|WP_082177297.1\|1242905_1244369_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|223931	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair].	6.42478e-05
NC_015850.1\|WP_014002747.1\|1244361_1245060_-\|acyltransferase	gnl\|CDD\|238878	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.	3.44952e-33
NC_015850.1\|WP_014002733.1\|1224244_1225432_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|238082	cd00140, beta_clamp, Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. .	1.23809e-32
NC_015850.1\|WP_014002745.1\|1242009_1242900_-\|thioredoxin-fold-domain-containing-protein	gnl\|CDD\|183262	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional.	6.50435e-32
NC_015850.1\|WP_014002730.1\|1220443_1223020_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|237540	PRK13880, PRK13880, conjugal transfer coupling protein TraG; Provisional.	0
NC_015850.1\|WP_014002734.1\|1225634_1226216_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	1.04952e-54
NC_015850.1\|WP_041637051.1\|1237104_1237494_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	7.30836e-09
NC_015850.1\|WP_014002735.1\|1226534_1230521_-\|hypothetical-protein	gnl\|CDD\|365992	pfam00271, Helicase_C, Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.	3.95958e-10

>NC_015850.1|WP_014002739.1|1235294_1236269_-|hypothetical-protein
MSMLETLDVSGKLLAVSPIAVSPPGSAFSSDDKGAPQRLPSVGKNRYLPASTFRHVLRYGAIRVVQEALKAQGKSLSLDALLMLDKGFFAQRKKDKGNPQGRSNGKTKAKDVLRMEQEVREKNPLLGLFGVWTIPSMLRVRNAFPLPNAQGQTYTVASGLVRKALEEDLVDALTKDEAEDYLQRLDDWSEADKETTGLKHISERPWEEIVAGVECEWGYQIHRFTPFQSGAVLAGLRYFAGDPVIGAHKAVGRGELALDLNASVIRQDILNGPQSEEAGTLTLRRGEFRVDGLLAEHLSEFDRLAKAGFPGMDFHCLPALVEGE
>NC_015850.1|WP_014002737.1|1233643_1234111_+|hypothetical-protein
MEKRSHHEWVHLPYRRGVQILEENGVRVLGQTSATRSAWAGISHAEGQPLQVYGILLVEHDQEHLQVHAAFFRRIGQRDKIRFLSRFFQQAFARWVECDHFSLSESPVVHLGHSPKGIMLTRDMDLPTWIRGRLAKPGRAVCRGKDEGTLRRKTA
>NC_015850.1|WP_014002736.1|1230513_1233429_-|hypothetical-protein
MSAVLELSRDHYPYPVKSILQYLDTLPKERLATCIQYGNGCFTLRVPRDIILEAAGLSGIQIPRKASAFGEDMDMEAKDLQKILSRLQGNITEIVEAMEGLDEVLTDPSGEPVSCTWELQASEARLEPMRGAIPANAAGVLLLVRETRDRTFESRLVENLKQRLMDPYSGEEMDEYEAQSTIDAAMRLDISQSFLSFLRETAISRSRIGIYNKLANRTMKILQESGKRAGFDYLKTILDFQRAVIDRPEAFRFSGKPDYGAEGMYTEIYKLAFHKQLPIWFTSRGILGSASDADEDLVSYAFRVGGENPQTGRLAIEDRLITMARERETGDNAYLPPLIVYAMLFDDTLKHLAPQEAFERIMGVSTQTILHRFVEKRSGNWEIRPEVHRKIQQQMRAIRNDLLYAWSISKGSSINKYFANLQSTQETADIRITIPWSLANVENIRDGIVTNYRLKDENRNARWLRDIQVVSADDNSRDRWFDIQVKISPAIQWIQPDGGTHHTQVRRVPSENQKILRLTLQSFPDEAANGDRTENKRYLDSERNSRMVVLAREVPEKSKTNKDNLDKACAAFFVENLLLEHFLLAVVKRLEKMTGSTIAVEILRLQQGNWEQFGSQRLYALGHLLEHRLASRTPVFQQGFDMGNKQNESYRKNRARALASYAYPMEMEAALKDRTVVIHLARYALDGDTQQAMATLFVADPSPTGVDHTVDRFRYQHARTLYRSSRDRNHASLLAEGWVLGDALQSARDLGATNILLVLSADGWKRESRGYDQGANQNLGALYTVAEKYCGPTLVVPMLYRHHLMFYRKGEKRGDVLILDGVNAWSGKTAVLDTVSGGGTDRLRLIPVQGLATLRTVQDGLQRGLMAYAFPYLDQPYTSAKQEMARFASVERHGWVHRVLLAHHAYRYEKIGLQGDRRPSISAMKNEPPVKLDPWGMTKIEDRGWQKLAGVTVDWLGLLSKIGYQGDLTNA
>NC_015850.1|WP_014002735.1|1226534_1230521_-|hypothetical-protein
MLDTSQRSVLGWIYEISVKSGFWETLCAKNALFAGKMDEAWRLSWKKHLQIQEESGSRLFSDGAREVLDQYLRFLWPLGHLHGQQLAIDLESTTSIRWDIFNLVRLFCPFPNFPSTDDVEKEKHVRLLREAFDLPEEVHVDTGRGKLPNADLAIAWLGKNPTRIVIDFSLYTGALAKGAREMVSPEGFWIGNLPADAMSIPIWKQCERQLQVSPFAATHTLGVTKAKVEDHLLLFYDLFSGKEKSFYKTCQSASYLSHWCDIDTPRPGTRLIAGAYTVFGLEMLGARWENGKMTDPLASLRDFYPKLYQKNRTENKAQAIVERESATSIVLDRTRKVLRFPKKRFSGQVERILSAEYFGTEDFQARETFWARPCDDLAGESEQIHTQNAFCNPASGLDHPLIQEALKDYVWWNPERRQESFRDLHADALQYGFATMHQPSPGAEKENLSITFALAHPGAGKTTTIVRTVLESPAPCVFLYASPRVSINDNVIAQIQKHLIESEEPVESAIAVTTNHEINALASHFSCSDGGVPSGLLAYHNWDSPVTSFRGIAYEPMEAIEALRSDVQKMEGASIRVEDKDERRRSVRKHRTNAPSVLKTLFDGIEGLLAPGRLSESVRIFLASVSLQAFRGDRWEQSARGFLDTIGPQLLRRVGDSGLRPRIVLFVDEVTGSGEGLRIVRSMIQLARDTAAKYPGVDVHVIVADASLIHVDVLRQWLESDSGDFPACVLQDAGSTNLPVFRRLDWQDGPTRYGPATVVEASAYPAGRLDVNYRIRVGEPDRRENAGSGQQDRSLRISFLIDTITEVFRGCPDGQQVLVFVQDKKLLEDMENSLKENLKLSSQQIRTLSADVPPKMRREILEDQGKNIRILLMTSAGSRGLDFPKVTRYVINVDHFSPETTLLEVQQVLFRGRGHGCDGLDRQVYFTMSGVFDKYDLSHEPVWGEGGTQELQMQLHLKSFLMDRLLMMVMLRSTLLTRACGRSRMERYSDSGNLTDTLFCPLGETGSTNPAVQLADILIRGKKAMENLRNRNLIEHGSHTNFMRYFAEVFHQRSVSVRLNHSRNEQAVWARHPVLAFLDDRISTVFIEQSGRDTSSLAEREFWRKKFTDLSPLVCTSDTRIVLGDCPGGAVWVRGFLLILEIKEAHLLLRQDMRTSESKKRLHNLLVAILKKIREVSGKKERIRDSYRAIHDLDRLLEEDGNAPRLEKEILGEEPGEILLVTPFTPPWVQVATDPESNDAFPGDFPWPSYLTGASNLLDRRSDNRWPMLTVEDVAERYNLVPDSQGAEPYEYAPFALVFSANTGKPLRILKRVQTTRGFQLLTTALPS
>NC_015850.1|WP_148262198.1|1226215_1226425_-|hypothetical-protein
MNNPHVQEQNPGDRCPVCGRRDWERGGWYRLADRKTIHVLRCRNCRTVQRVPHHRFFQVAATSGQEFIR
>NC_015850.1|WP_014002734.1|1225634_1226216_-|lytic-transglycosylase-domain-containing-protein
MLPIDSLIAQCAPFVAPKTMSAIVRVESGGNPLAMWNNTTHQRILPPNRAAAVAYLQGAMAAGQKVDVGIAQVDTENFAAYGLTPETAFDACTNLRVGAQILQSDYARAAARFGPGQVALYHAFEAYNSGHLWGDAHYANAVLRSAGIPVYVQSSGKLVYRPLATVFSWSTAPTVSAASPSRASGLAAYVLKW
>NC_015850.1|WP_014002733.1|1224244_1225432_-|DNA-polymerase-III-subunit-beta
MERQLSIDTLRKIATASAALVKGNSVQPIYDHVLIEDQRVVLGNATTQLEWFLDEEERSFGFAPEAYPARDLERIAKSLPDGAQVQFGEQGQIRCGRSRFRLPVYDGAQYPVREEPLPSAWIRVQTQDLERIFPSLRRCVAKNDTRTYLNGIHWQIRRVGEQESLLVLEATDGHRAARFSLEYTPPLDSAHSPSGASADTEPSVPTLDAILPVEGISAWMKLLSSRKIAEFSIAQIRSGVLFQGGGLRLWLTSLDGRYPSLDTILAQLEKRKDVLSLSIADFQRALTLATIGVGENQVVTLSTAPEHLLSVAAKGEERQAEDQIPAQWSGSLPLRYSFNIQYLMDVVDSVKETTKGSEDTEDPHMALRFDVSEKDPTSTFAEVPGGVLVVMPIRE
>NC_015850.1|WP_014002732.1|1223798_1224044_-|hypothetical-protein
MSWPLFVLFLYAFGTLVVYLLATHRTGEYFGLLLKPKSFSFLYAVLEVLMRIVIGCLSGLFFLLSFMLADNVFRSFLDILS
>NC_015850.1|WP_014002731.1|1223309_1223735_+|hypothetical-protein
MVYVDTAGDSFLSSALLDIEDRPDALLLGPDYFPVSALDDFWSHSGVAYLDASKAPHSERHLRLQAWLQEFADFLIVRRERRICPDNVQVLVVVDELVPPLQDVAALLARIARKSSVHFMATMVIPHWGEDVACHNLLDKI
>NC_015850.1|WP_014002730.1|1220443_1223020_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MASVVHRPEQNILDYRAQQRIRNAPTLGLFATAMTGFFASYLGASLGVHIAIPEIYDPNFFPGYVAKPFFGLPIFSPWELGKMAYAEWQYPMMQKATEIACAIATVPTLAMGIWQFVRSQRLWQSQYQTDLHGSAHWASRDEIVKMALLPEKGLHPAKGLHPAKGQKPSKRVCYVGGIPNERDETDYLQHAGAEHIICFAPTRSGKGVGLVLPTLLGGWQESVVVHDIKGENYLLTAGWRKSIGQKILKFNPGFGMAADPLNGMEADNNGDLGTKEQCCHFNPLEEVRVGTPFEVKDVMNIATMIVDPDGKGLNDHWQKTGFALLTSVILHVLYAEPDKTMRGVAAFLNDPELEDVDQAFDKMMDTQHRPSNPALLKQWTTLYGNATVHPAIAQSAKEMKNKAPNEKSGVISTMMSFLSLYRDPIVAEWTEYSDFHITDLQDADAPVSLYLVTSPEDKNRLKPLIRLVINLIASKFTAEDRLISKDGRMICKGKHPLLLLLDEFPSLGKMDIFQDAIAFFAGYNVKLFLITQSKSQLEDEGRGYGKSGGSVIIENCHVRIFYAPNDVTTAEWLSKMLGKKTVVMENVTQSLEGSVLPSPKGQSRSLNYQARDLLTPDEVLRLRGPIKNGSNIVKAGDMIVMVAGFAPVYGRQILYFKNPTFLERAQIPPPATSDEISARAKDYYAKLLGHDKPTSIESTKPDFDTFEESDYTDSPPAGSSAAHDSAGPAGGGPAGPADSNTPPEGGLAGGGPADGTSDPRSSAPRSGDPRSGDQGGGGGGLDTGTILEEGADEDAEDGTLDMDVSDSITDLTDIRASFIEKLPARLLEASGGADAWMQDTQRLDRRADKSELSGMLKG
>NC_015850.1|WP_041637051.1|1237104_1237494_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MDDRDFLFAPYGESIVFRSRSEPLPDTHEVWRMRSLLAPVMRREHRERVVKPREFRGWLASLLERHGWVLRSIEQVEPMEMTIRHGRRLTVVDTVFTAQVVDRENADRSYRSGIGRYKAFGCGMLIPQG
>NC_015850.1|WP_014002741.1|1237556_1238339_-|hypothetical-protein
MERTPLQEAVWFFYERLGHRFPAPDWGEQREDVCSICGTEGRGYDDNRPNHRVFRCIACTAFYAPAPDHFLTTGKDRSFAGIVKNPWVLDANGRFRSPIGKASRKDDAFVVNARAHGMDFYSAENPFQTLYRGIYDGEFAFPLLFVRLGQNKIESMRMMRLSTSDMLFFWDKSEMRAFDLALVREAGRLPLGEKPWSDWARWGIPEDLAERVRFLKDVRGKAPFRVLTMHGDNRLFLRQVVDREAGEKTKAEKKKRSRKQ
>NC_015850.1|WP_014002742.1|1238338_1239022_-|hypothetical-protein
MHYVLKVRCKTPIAMGKAGFYSGLDAVLLHRLCLWTGGDTDAARERMPLERDGELWACGGGYNPQDALFLSRTAPRRVPVFRLFLRDGGFREMAALPPDELQTEINAFFGQETEATGDAYAVVRNARELHFRFRSTDPERVLYLLRVEPFLGPGHSVGWGEIERVDLEEKGETDALWVYTDPLNRLTRPVPMDWTDVDGQESLSALEAPYWSMPKVPARVPYPVGVR
>NC_015850.1|WP_014002743.1|1239006_1241187_-|ATP-dependent-DNA-helicase-DinG
MSKLFTLDRFAGAGLRLRSLQIRVAQDVDHCLAEPLPEPEAITSRDGEALSCRRSLCGFIEAGTGVGKTIGYLVPLLEYASQHKKRVGISTYTRFQQRQVAKDLALVQQRIFDGLDLQVAIRLGRQNFVSRERVAFWRERLKGTDLPKAWEDFFAWVDRWDESTDPLDTTFLAWREIYPDMPEFSGLAEEDFALREDEPHAWYEAHAKAAQSADVVITNHATLLIHGALKTGLLGDLDAVVVDEADRLISAAQSLLSRRLRASLVVRDLRRQYPDPREFDFAEARQEADAIQDLLRDLGETLEYRDTLLSDWPARFPEENAALRGHLERLVPLLPSPSARRDFQRVLAGLDGGETVDVVYSPIRHLPAFHIDDLEPERFVGKLFVAFGEDEVFLPRVVLVSATLSDPMTEKLDFVHQTFGLFRRPFLTSRYEPDRFGSMTFVLPDPRVGAPFLVDDEDLSERMWNPEWLAYVENALGIDDHRKLLLTPSFEDIARWMERRGLEVGKTRLHEGILYHQSDVPGAKLVQRIEQDPDVRVVITPSLWEGVNLRLDGKPWMQDVLIARVPIPPYSPLLQERKIAWRLARQAEQARKKRERGEKAVWRTEEELRAELVWESAKKALRRLRQGLGRGIRDERDTVRVWMLDPRVLFPTDALNGLLFVAAGLEDGEDLVQAAEKIPVHPALRRWSQSVPARFRGQLSNADIFLRDGTLSSLVESEGALLCTTC
>NC_015850.1|WP_014002744.1|1241497_1241722_-|superinfection-immunity-protein
MITLFILIAILFGAALYFLPTILAYLRKKSNLVAIFAMNLLLGWLFVGWVIALVWALSNDSPTTIIVHSHKDEG
>NC_015850.1|WP_004872847.1|1241752_1241989_-|hypothetical-protein
MMEADRFLDTQIEVLDIARDMLVKEGLPQDDHHLDLALHALVRGVEIGLMDSQLADRIVRFGAAHARQYPSIGRDYPR
>NC_015850.1|WP_014002745.1|1242009_1242900_-|thioredoxin-fold-domain-containing-protein
MLPVSKKMALWFGWTGFVGMGVLAAGIWTVDLLGTAHAQTNPAAAAANYRPLVDKLSAGRATVLSTFAGPDGLTGLVVGPANGAGPKSIAWGIDGENGPVLIPGPVLDSQGKNLSQQAAERHGVIPKPMAGGKLAQAMLAAPGFTVGTKGPLFTVFLDPNCIFCHDFWTKAYPLAKEGKLRFKVVPVGFLKPSSLPKAVTILQSKDPMAAWAQNEASFNVKTEEGGAKPAKVLDPKVLAEVKANTELLARTGEVATPTIVACLKGDKTPQVFHGMAPGMLTDLGRGASIKGDGTCS
>NC_015850.1|WP_082177297.1|1242905_1244369_-|site-specific-DNA-methyltransferase
MGRNIAKRKVASLTLPLFLEPEAEPQYTIRVGNLLDVLPTLPENHFDGVLCDPPYHLTQNSRRGSVQAGDSGKTPFGRHGVCTDRGFMGQTWDGGDIAFRPETWRAVLRVMKPGSYLLAFGGSRTFHRLAVALEDAGFVLVDTLMWLYGTGFPKSLDVSKAIDKHLGVARPVVGKRKHPTLKNCDLIEEAANAAHGKNFWRREWDVTLPGHADSARWNGYGTALKPAYEPILLCRKPGEKTYAENALKWGCGALNIDGARIPVSESEGERPLREVTCDPDKNGMVYAGRRNAGGGFDGGSRAIGSTSEGRWPANAILDEEAAAMLNTQAGPRKSGAMPKGTLRRARQGNAFGRFPGVATHKDIAASVGNASRFFYVSKVSTKERQAGVTSSEPRYAHGTTLRRIENSEKVGNDHPTLKPIDLTRYLANLILPPSRGDDSRRLLVPFSGAGSEMIGALQAGWDTVLGMEQSEHYAEIARKRLIYWIGG
>NC_015850.1|WP_014002747.1|1244361_1245060_-|acyltransferase
MQKKALLLATALLAIATQAFGASANGTGASVTGATSDRVAMHRIVQDRAVAPQADYAWDRPYCLRYRSRHPDLLILGDSIFDGWSGYLMHVFPRALIDARVGRQFSSAIRIYQSLLAYSGIRSIQTIVVDLGTNGPVTAQQIAQFMMLAGNRRVIFIVPEVPRPWEREVQSLYEGLPAQYPNVQLEYWNRISTLPNGQENPAYFWGDGVHPNWYGIQALVGGLQAVLATRNG
>NC_015850.1|WP_014002748.1|1245059_1245539_-|hypothetical-protein
MKPEDQENDKYYWKQKPNASQWPLKNPTDKKKEKLHRMSDLTRWLFIVRTILIPVLFFKAWIYGFGYSFVYSYSVVLSRLSPYLSDFSEWGYTHHPLALTAMAGVLAALARLLLLVLPWVLATLFAYVVVLGLYWISVWTGIVPPWSARFTLFREKGEI

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Crispr_ID: NC_015850_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015850_5

1997296-1997452

Unclear

Consensus_repeat	Method
GAACTAGAGCCAGAACTAGAGCCAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_015850_5

>merge|NC_015850|5|1997296-1997452|CRISPRCasFinder
CAATTCGCGCACAAACTAGAGCCAGCACCGCCTACAAAGTTTTTTGTCATGAGTTGTCATGTGTTTTCAGAGTCGGCTTCGTGGCGCACGAACTAGAGCCAGAACTAGAGCCAGGGGGGGTCGCCCGGGGCAGGTCGTTTGGCAGAACTAGAGCCAG

>NC_015850|5|6|1997296-1997452|CRISPRCasFinder
CAATTCGCGCACAAACTAGAGCCAG	CACCGCCTACAAAGTTTTTTGTCATGAGTTGTCATGTGTTTTCAGAGTCGGC
TTCGTGGCGCACGAACTAGAGCCAG	AACTAGAGCCAGGGGGGGTCGCCCGGGGCA
GGTCGTTTGGCAGAACTAGAGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015850.1\|WP_012387019.1\|1987484_1988699_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NC_015850.1\|WP_082177351.1\|1992793_1993777_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_015850.1\|WP_014003135.1\|2000495_2001527_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_015850.1\|WP_014003134.1\|1998419_1999235_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162
NC_015850.1\|WP_004872785.1\|1983368_1984643_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NC_015850.1\|WP_004873091.1\|1997652_1998423_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293837
NC_015850.1\|WP_014003128.1\|1989808_1991191_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NC_015850.1\|WP_004873104.1\|2003317_2004436_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_015850.1\|WP_081254334.1\|1995361_1996078_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NC_015850.1\|WP_187288673.1\|1991229_1992720_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_015850.1\|WP_103415070.1\|1984720_1985602_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|185090
NC_015850.1\|WP_187288615.1\|2000040_2000457_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_187288672.1\|1988711_1989449_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224401
NC_015850.1\|WP_004873103.1\|2002579_2003305_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_038472026.1\|1995089_1995278_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014003137.1\|2004417_2005782_+\|protoporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|215314
NC_015850.1\|WP_004873108.1\|2005821_2006652_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NC_015850.1\|WP_187288674.1\|2001553_2002393_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NC_015850.1\|WP_014002164.1\|1985821_1987345_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_015850.1\|WP_004873095.1\|1999236_1999989_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|183021

Protein	Function_ID	Function_description	E-value
NC_015850.1\|WP_012387019.1\|1987484_1988699_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.27763e-94
NC_015850.1\|WP_082177351.1\|1992793_1993777_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.56774e-45
NC_015850.1\|WP_014003135.1\|2000495_2001527_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.86292e-27
NC_015850.1\|WP_014003134.1\|1998419_1999235_-\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	1.71021e-110
NC_015850.1\|WP_004872785.1\|1983368_1984643_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	1.3863e-46
NC_015850.1\|WP_004873091.1\|1997652_1998423_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293837	cd16279, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. Some members of this subgroup are named as octanoyltransferase (also known as lipoate-protein ligase B).	1.7544e-97
NC_015850.1\|WP_081254334.1\|1995361_1996078_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	5.73731e-68
NC_015850.1\|WP_004873104.1\|2003317_2004436_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	8.11441e-54
NC_015850.1\|WP_014003128.1\|1989808_1991191_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	7.62915e-70
NC_015850.1\|WP_187288673.1\|1991229_1992720_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.38245e-55
NC_015850.1\|WP_103415070.1\|1984720_1985602_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	9.15301e-60
NC_015850.1\|WP_187288672.1\|1988711_1989449_+\|ATP-binding-protein	gnl\|CDD\|224401	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair].	7.38458e-50
NC_015850.1\|WP_014003137.1\|2004417_2005782_+\|protoporphyrinogen-oxidase	gnl\|CDD\|215314	PLN02576, PLN02576, protoporphyrinogen oxidase.	1.08824e-102
NC_015850.1\|WP_004873108.1\|2005821_2006652_-\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	8.74222e-21
NC_015850.1\|WP_187288674.1\|2001553_2002393_-\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	3.83495e-58
NC_015850.1\|WP_014002164.1\|1985821_1987345_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.23926e-25
NC_015850.1\|WP_004873095.1\|1999236_1999989_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	2.01867e-83

>NC_015850.1|WP_081254334.1|1995361_1996078_-|type-1-glutamine-amidotransferase
MSNILVLQHHPEEGLGLLEEIFLESDHHPTIHRLDLGVPVPKNSNAYSGLVIMGGPMSANDEDRYPWLSDEMQLIRATIKAEKPTLGHCLGAQLIAKAMGAQVIANPSGPEIGWFPVQKTVAGRRSLWLKGLPESFLLFHWHGETFMLPEGGIPILASAICANQAFSIGQHCLALQGHPEVTETIVRSWTLAMAEDLKNTGVGVQSVDEITRDLAQKCASLADISRQLYARWVELLTH
>NC_015850.1|WP_038472026.1|1995089_1995278_+|hypothetical-protein
MGFFEPPLSNNAAIVLLVGKLLAEQTEEWQVIRRHMNQECLVQVVGSDILTAQVLINDPQTA
>NC_015850.1|WP_082177351.1|1992793_1993777_+|LysR-family-transcriptional-regulator
MVALKKSRAEPSNGEAIELIGSNDRIYRSWRYLPLLLNYFETFLVVAECGSVSKAAHILHRSQPAISERLQRLTELVGEPLYYGVGRGVRLTAAGEAYLAPARRLRDLKREWSDMVQRRRQLQEGVLKIAATNTVANYFLPQYLVRFRQDYPEVELQLRGGITDWSQYSLLDWDLFFLEEGTPMTGLPPHYAASPWLEDEILAIFPRGHAFAEKPNLDLADLASQPLVWRETQSGIRQRILQEFRKIGIEPSIRIEVNGVEAMGTAVAAGLGIGFITSTALRHRHDWAVESRRVGDPIHWTLYLVAPKTPYRSHTIARFLECLDPAK
>NC_015850.1|WP_187288673.1|1991229_1992720_-|MFS-transporter
MAIGLEHFLVLFNGGAYLPMIPRIIGALGRNALYGSWTQDLYFLALGLGLPLGRWASQRFGNRNSLLFCLAAIFFASLVNATTREYVPFLTARIVAGLAGGLSIPLSLNLLLRHYHSDRRDHGLFLWGIAAITPFAIGPFIGGWIDDAWGWRWLFLLNLPILLMSFLGIWLWEPPERQEERPSMDWLGYALLVASLVTLQMLCNLGSKDDWWRSPEIRLLAVLTLVLGGATVWWLRRQTLPALDLRSFRYVNFRVAALGVFLTALVFQGTLALLIVQYQLSFGYSARAIGEILLSLAIFAPASATFSHWYLGRHDPRPLALISLLLLSGAAWWLSSYDLPVSPSSLVEAPMLVGLGLGGAFAAWARIGLWGLSGPSEQRAAVALNLLRGTGQAMGIPLVAALWERRLDLHRHFLVEVQGSNLLFWHAAERHFANIPGLLAASVRQHAAMLAFNEIFYLAAGIFGGLALWSLLSRVPKEKSTESIAEQTAIAELVEP
>NC_015850.1|WP_014003128.1|1989808_1991191_-|efflux-transporter-outer-membrane-subunit
MVGGCARLPEQLPNNPKDQVDLDIPRPTGIAAAPWPAQEWWRSANDPELNRLVQIAFARNPDLRAAAAKVLLAQADVGAARSRLLPHFDADFALTQQYFSAQGLHLSANGTSNTFGALNPIDIHYHVDLWGQDRDLVRAARGRLAMNQAEAAQARLLVSTAVVVQYFALEGDRRLLQQTEHLHTLQEQAKAVAEGGFQQGLFNASQIHAEDLALAESAQRIAKLQAAIAAEKHALAALCGEGPSMTIGSATITKQALSPALGLPKNLPLRLLARRPDIVAARWAVQAAAAEVGAARAAFYPNINLRLLAGWNSIHLGDLFNPGNFAHAVGPVITLPIFEGGALRAHLRAQNAVFLAAQDRYRSTLLAALRQIADRLSTAQKLARQERAQRHAAAAAQAQWELRQQAWRQGLSDALPSIAAEITCVQVRQRQTAITTARWQNWALLESALGGGYRHTIKDG
>NC_015850.1|WP_187288672.1|1988711_1989449_+|ATP-binding-protein
MQGTTAPQHSTPYPLNLTKSPEFLALLLQDEIARRDQKRFDTLLRQAQFRNHKTLEDFAFDRLPSLNRSLVHDLATGRYLREKAPVLIVGPCGTGKSHLAQALGHCAIRQGVDVRFMSQSALAGALHAARATGTYDRVFRQLAKVSLLIIDDFGLKPLRPPHDEDIHDLIGARYEQATTMVTSNLDFSEWGDVFPANRMLGVATIDRLRHGAYRLILEGESYRAPRPLPEVPKKPVAKGAKIAQS
>NC_015850.1|WP_012387019.1|1987484_1988699_-|ISL3-family-transposase
MVPEELFSLALGLVPPWLVDHVTFTVEEKRLDLHINFPKGSRFACSVCGEECPVHDTRDHTWRHMDFFQHEAYLHARVPRVKCQEHGVHQISVPWAREGSRFTLLFEALIMTLVREMPVLTAARMVGETDKLLWRVIDHYVPEARAAVDMANVHAVGVDETSSRHGHDYITLFVDLNARRLLFATPGKDAKTFEKFSADLQAHGGSAEAITDVSMDLSPAFQKGAAEHLPNAEITFDRFHLMKLVNEAVDDVRKGEVLTQPNLKKTRWLWLKNDCNLKMKQKEKLQELLKDQNLKTAQAYQFRLTFQDIFTIKNRHQGATLLKAWLENARTSDLPPIVRVAYTIMNHWDGVLRWFESQITNGILEGFNSLIQSAKAKARGYRTHKNFINMAYLILGKLDLRLPT
>NC_015850.1|WP_014002164.1|1985821_1987345_+|IS21-family-transposase
MFTIRQILVRMRQGDTDRSIARAGLMGRKKLGVLRRQATRLGWLDSHTPLPEDGELATVFQRRSESQPAQCQSSLRDHEQRIAEWVAQGIQATTIHAALVRQYGFPGSYSAVKRLVRRIRQAVPPKVTSRLVFAPGEAAQVDFGAGPLLADPRTGELRKTWFFVMTLCWSRHQYAEFVWDQSVTTWLACHRHAFSWFGGVPTRIIIDNAKCAITKACINDPAVQRAYGEYAEGYGFRIDPCPPRDPQKKGIVEAGVKYIKRSFLPLREFRDRDDAQQQLREWVLGEAGNRVHGTTRQVPLTQFAQVERALLQPLPTNPPEICTWARPKVGQDGHVQFARCHYSVPFRFVGQSLWLRATDTTVRIYAEHELVATHPRLFQAGSFATVLDHLPPEAEAWQRQDLQWCLEMARGIGPHCHGVVHQLFADRQLANLRPVQNLLRLRLKYSPERLEAACARALHFGNARYQSVASILKHGTDQEPLPQQDLASDSTYTRGGRFLRDSKTLFH
>NC_015850.1|WP_103415070.1|1984720_1985602_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MALQASEAALGRTVRQLRQEFAAVQETQAKLRAQQAQLTKLRDDLQRYRGAQASGAVATIQIADTTQDVNALQAEIAATAAKLQAAQALVEGTTLQNNPQVRAAVADLERRYIDWARRDLRAPISGFVVQRSAYPGLMIHPGERLFTIVPLDDLWVVANVKETQMAHLRPGQPVRLESYYYGDRVIFHGTVQGLLPGAGSAFAVLPPENATGNYIHIVERVPIRISLRRAEIRRYPLRPGLSMIAHIDIHQEGPKNVLEPITTTPTRGYESRIYAGELKRARRLAQRIIARNS
>NC_015850.1|WP_004872785.1|1983368_1984643_-|FAD-dependent-oxidoreductase
MDRYGDSTQKPRVHKAEVMDEISSWDYVIVGTGPAAAEAAVAIRELDNRGKLLMLGAERQLPYQRPPLSKGLWTGKDTVEELPLRSAAEWDGLSVQIHLGDAVIELDAGARTLTSASGRIYRYERLLLATGGRARQPELAIATLRDRVFTLRNFQDYERLQAAARPGLTVLVVGGGFLGAELAAALSRQEGLKVHHAFAGNAPLAHVLPPTLQKVVLARYGKAGVQLHPQHRLEGLDWEDGSVRAHFTTQAPIACDLLVYALGMESNLELAQQAGLTLDKGGVLVNTELRSSDSRIWAAGDLATYPDPVWQEPCRLEHWDNAEATGRAAGRAMAGRSEPFRHQSLFFSDLFELGFEAVGRCDSQRVLRVAAPPGGGKAVVYYGDGDWVEGVLLWNVWGKADAAREGIAAHRPLMDLHWVETLET
>NC_015850.1|WP_004873091.1|1997652_1998423_-|MBL-fold-metallo-hydrolase
MSVRVRFLGTGSSAGTPQVGCDCAVCRSDDPRNRRSRASILVEAEGVALLVDTGPDLRQQLLRENVRALTAVLYTHFHADHINGIDDLRAFNFLQKQVLDCYGDVRTGKELEERFRYCFLPPDPAWAKPSLRMHHLDGPREFGPLRVTPVPVLHGHLQIFGYRFNDVAYLTDLKRIPESSMALLQKLDILILDCLREEEHPTHINVTEAIALAKEIGARYTYFTHMTHDLGFASLAERLPEGMAPAYDGLQIRSAG
>NC_015850.1|WP_014003134.1|1998419_1999235_-|TatD-family-hydrolase
MGLPTTEEQVLQAALVDSHCHLDFDDFAEDRDAVLARARAAGVEHLLIAAVTPSHWARVQSLAAEHAGIWAAAGVHPNEDPATTPELDELLRALAAPRVAATGETGLDYFRSEGDLSWQRQRFALHIAAARQSGKPLIVHTRAAAADTLDLLRSEKARDVGGVIHCFTEDWDFACQAMDLGFYISLSGIVTFKKSTELQQVAKKIPADRLLIETDAPYLAPVPQRGRRNEPAYVAHVASFLAELRGEEPQALAAQTHANFFRCFPAAGMAA
>NC_015850.1|WP_004873095.1|1999236_1999989_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MAEDWAIGVHAVAAAIDAGEVEQLWVAREREEDRRIREVVAAAELHGIRPRWAATAEINRLGGGPQHQGLVARLLARPAPTLAQVLEDIPAPGLLLILDGILDPHNLGACLRSAEAAGANAVVLPKDHACPVNATVRKAAAGAASRLPIVVVTNLVRSMVGLQEYGYWIAGLAGEASQDLYEADLRGPLALVLGSEEKGLRRLVREHCDFLWHIPMCGAVESLNVSVAGALALFEARRQRRTQAKPDELR
>NC_015850.1|WP_187288615.1|2000040_2000457_-|hypothetical-protein
MDYQVLDQQYNQLQQQTQNNIQALQQVAQRVQAVVPDNTTARELILDLRNLAMNLQQQQQSTAMMLQQLSMRIQQLEMQLQSMGQTGVNPNVMGQRAWNQPMQPGMGSSFLGNVATGLGLGAGFGIAENVVDDIFNSF
>NC_015850.1|WP_014003135.1|2000495_2001527_-|AI-2E-family-transporter
MNAGQVRNGPWGTLVLLLIYAGAAYALSPYAGPLLMGAVLAVVGWPWQLRLERYLRLPRWLGALLHATAWVAVIIIPAVAIVDSVLPELHLLVLRWQTGMPLLTLPLSVQQLPFVGHWLSTHLAEINGAYLSNFFREHADIITSSLGQLWFFTLHTFFAALTVFALTLHGERIREMLQLGASELWGRDRGERFLLAAREAARSVLIGLIGVGVIEGILIGIAFAVAGLKMWPLWLVATALISPIPFGATTVVGAATLWLAFSGHWLVGLIIFAWGLVVITVADLVIRPLLTGSQTQAPFFLVFFSILGGAQAFGLIGLIIGPILVLMARGIWRSWERRVRLGA
>NC_015850.1|WP_187288674.1|2001553_2002393_-|PHP-domain-containing-protein
MHSTFSDGSLSVPELVARVADTGVEVMALTDHDNTAGVEMAAREAKRHGLRLISGVEISSVWEEQGIHIVGLAMDIAHPALQGGLERIVRLRDERALEIARRLHGQGLAGAWEGARAIAGSPLVGRAHFAQWLVQAGHCQDTQEAFQRYLGRGKPAYVPSDWIPMVEAVGWIRSAGGEAVLAHPGRYKLSGARLTRLLEDFRAAGGVGLEICSGSQAAADREHLGRLALRLGMAGSVGSDFHGPHLGHAEIGQLLPLPDGVEAIWDRLGVTVATPFPSH
>NC_015850.1|WP_004873103.1|2002579_2003305_+|hypothetical-protein
MASVLDISAARSRFEQFAQPLLVKFAESRIATGEQVTPPQLVDALRQLFLVLERDVANWDPSLPEDEPERIGDLTIGLLLDLATWADRLGERPAKAAMEIVSVAVAAWLVQNGQPIHTLEPVVNGLAILANAEKDAEPLQSLARLMGAVAEAAATDFAADLESQDPQRPWRILLFNWAITATRAQDPEQMRTAFAALQRYLPADAPLFFQEGRQQVLQGDYTPEVRETMLAAAEAAGHGLH
>NC_015850.1|WP_004873104.1|2003317_2004436_+|AI-2E-family-transporter
MTAGENPAGALQRLYVLAALVVAAYLLYRLGAVLTPFLIAGILAYLGNPLVSRLQRWGLSRTVGTTLVFVLVLLVVAGIVTALLPAIRHQALLFLDYTRQYAELLQRQIVPELSARLGIQLDSQTITHYASANAQKLADWLGKSLRIAVSSSSGILATLLDIVLIPVLGFYLLRDWPQLLERIRELIPRRRLPTVELLARDANTMLMAFLRGQILVMLALGTSYAIGLSIVGLQTAILIGLLAGFLSFVPYLGVISGISMATLAMYIQTGAFLPMVGVWVVFGIGQILESMVYTPYLVGERIGLHPVLVIFAVLAGGELFGFVGLLLALPVTAVLIALLRHAQRWYLDSTWYGGHAPLPAAEEEVNGCPAKQ
>NC_015850.1|WP_014003137.1|2004417_2005782_+|protoporphyrinogen-oxidase
MSSETVIVVGAGLTGLSATWYLHQRGIPALLLEAEAEVGGNLRSRSEDGFLRDLGPNSLMIKGDLLPDLIRQLQLEDRVVEANPLARRRFVLNRRGHPVALGPDVLFSSSLLSLSARLRLLSEPWRPRRPQSQNDESIADFVRRRLGPEALTWMVDPFVSGVFAGDPEKLSVTAALPRLAAMEAESGSLLRAALRRRRAGKKEGSSRLVSFRGGLQELPRALAARLPPDRLALSRPLTHLQRRGELWHLQTPAGDLECRRLVLALPAAESARLLRAEAPELAAELEAIVYPAVATVALGFPREAVDHRLDGFGLLIPRRLGIETLGVLFSSTLFPERAPPGMVLLTAFLGGAQQDISGRSPAELEAQALADLRPILGIRGDPAYHRCALWPRAIPQYALGHRQRVERIHELRRQLAGLELLGNWQGGVALGDCVVQADAFQRTFAQVDTATGPS
>NC_015850.1|WP_004873108.1|2005821_2006652_-|L,D-transpeptidase
MKKATLWWRALWLCAFPMLLVGCTTQAPAPQVHSVAWYAAHIPPPVIPTVSAPTQSVQPAPAPQELHIVVDTSDRQLRVYKGDALLETFPVAIGFNGAAPRRTRGDDITPVGKYRIGYVRFGTRYGPFMLLTYPNRDDARWGLREGIITQRQYDAIISALDRGEAPPQNTPLGGYIGIHGMGPQFADDPDSKVFPGRWTAGCVALSNWDARQLATLVRVGTPVDIVGEVPGYRRGTPAQRRPAGLQSVADNPEGHLDHLLAALQHGSTSAPQPAYP

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Crispr_ID: NC_015850_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015850_6

2117347-2117616

Orphan

Consensus_repeat	Method
TNACCGGCAGTTGCCGGT	CRT

4 spacers

The CRISPR arrays of NC_015850_6

>merge|NC_015850|6|2117347-2117616|CRT
TTACCGGCATTTGCCGTTCTATTACCGGTGTAGCCACAGAGCCGGTCCGATGCCATTACTCACTCACCGGCAGTTGCCGGTGACTTGCCGGTATAGACCTCCAGCCTGTCCGATACCATTACTTGCTCACCGGCAGTTGCCGGTCTATTGCCGGTAGCGTACTCTGCCACGCCCACAGACCAGCATCGGATACCGGCAGTTGCCGGTGACTTGCCGGTGTAGACCTCCAACCTGTCCGATACCATTACTTGCTCACCGGCAGTTGCCGGT

>NC_015850|6|3|2117347-2117616|CRT
TTACCGGCATTTGCCGTT	CTATTACCGGTGTAGCCACAGAGCCGGTCCGATGCCATTACTCAC
TCACCGGCAGTTGCCGGT	GACTTGCCGGTATAGACCTCCAGCCTGTCCGATACCATTACTTGC
TCACCGGCAGTTGCCGGT	CTATTGCCGGTAGCGTACTCTGCCACGCCCACAGACCAGCATCGG
ATACCGGCAGTTGCCGGT	GACTTGCCGGTGTAGACCTCCAACCTGTCCGATACCATTACTTGC
TCACCGGCAGTTGCCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015850.1\|WP_014003228.1\|2119691_2120918_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_015850.1\|WP_014003226.1\|2119050_2119317_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NC_015850.1\|WP_041636482.1\|2118644_2118866_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_148262222.1\|2114763_2114964_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014003221.1\|2115546_2115909_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014003215.1\|2111195_2111825_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225110
NC_015850.1\|WP_014003230.1\|2122414_2123371_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014003222.1\|2115901_2116942_-\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319261
NC_015850.1\|WP_041636472.1\|2111821_2112037_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_015850.1\|WP_012387019.1\|2112438_2113653_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NC_015850.1\|WP_187288623.1\|2122227_2122365_+\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_014003231.1\|2123398_2124211_+\|SET-domain-containing-protein	unknown	unknown	gnl\|CDD\|376403
NC_015850.1\|WP_041636480.1\|2114963_2115557_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_148262221.1\|2113963_2114758_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_148262224.1\|2121609_2121774_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_015850.1\|WP_041636474.1\|2113656_2113953_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_148262223.1\|2118333_2118597_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_082177438.1\|2121736_2122039_-\|primase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378031
NC_015850.1\|WP_014003218.1\|2112046_2112367_-\|hypothetical-protein	unknown	unknown	unknown
NC_015850.1\|WP_041636484.1\|2119303_2119585_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	unknown	unknown	gnl\|CDD\|379750

Protein	Function_ID	Function_description	E-value
NC_015850.1\|WP_014003231.1\|2123398_2124211_+\|SET-domain-containing-protein	gnl\|CDD\|376403	pfam00856, SET, SET domain. SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.	1.04959e-13
NC_015850.1\|WP_041636484.1\|2119303_2119585_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	1.68882e-39
NC_015850.1\|WP_082177438.1\|2121736_2122039_-\|primase-C-terminal-domain-containing-protein	gnl\|CDD\|378031	pfam08708, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	6.05749e-06
NC_015850.1\|WP_014003226.1\|2119050_2119317_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	1.20798e-18
NC_015850.1\|WP_148262224.1\|2121609_2121774_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.43877e-05
NC_015850.1\|WP_014003215.1\|2111195_2111825_+\|EAL-domain-containing-protein	gnl\|CDD\|225110	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].	9.75545e-19
NC_015850.1\|WP_014003222.1\|2115901_2116942_-\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319261	cd16404, pNOB8_ParB_N_like, pNOB8 ParB-like N-terminal domain, plasmid partitioning system protein domain. archaeal pNOB8 ParB acts in a plasmid partitioning system made up of 3 parts: AspA, ParA motor protein, and ParB, which links ParA to the protein-DNA superhelix. As demonstrated in Sulfolobus, AspA spreads along DNA, which allows ParB binding, and links to the Walker-motif containing ParA motor protein. The Sulfolobus ParB C-terminal domain resembles eukaryotic segregation protein CenpA, and other histones. This family is related to the N-terminal domain of ParB (Spo0J in Bacillus subtilis), a DNA-binding component of the prokaryotic parABS partitioning system and related proteins.	1.082e-09
NC_015850.1\|WP_041636472.1\|2111821_2112037_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	5.507e-08
NC_015850.1\|WP_012387019.1\|2112438_2113653_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.27763e-94
NC_015850.1\|WP_014003228.1\|2119691_2120918_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	2.54773e-32

>NC_015850.1|WP_014003222.1|2115901_2116942_-|ParB-N-terminal-domain-containing-protein
MPANEIVILPQIEDLLYPLKSEELAHLEASIAKEGVRDPLVIWRRDNESILIDGHHRYAIARKLGIAFDVKEIQFVDMNDVLDWVDKNQLGRRNLTDEERTLTIGRIYQRVRDQRAAARAGTAESRGECGSALQHVADGWNVSTGTIKRASDFASAIELLKSLGEEGTMAANRILAGDVADGITELPKVYKTDNDRFPELATGLCSGKKRIRDIIPKSPVASREPEHERPARTVNPQPAEDADLPPIDAQRYTTFSSDAEPNSDDFFRDAVEEGASPMPGLEISPVEIQANVLQLFTAMDFLLRLNPKSVRENLPQYVIKQIVEHIQPTAQWLQDFAQSEREQAHG
>NC_015850.1|WP_014003221.1|2115546_2115909_-|hypothetical-protein
MASSEFSSGAVVLPDVTILKNLNRDLFQLNLGYLMLVREYADRDMVMAKKLFRNIPAMVLERMAELPPQRLAHVARAITTPVLYPGLNENGWNMVLGVMDNELQPAELSEYLLGVLLNER
>NC_015850.1|WP_041636480.1|2114963_2115557_-|hypothetical-protein
MSDKPYSRDMPFASKSATDKRLRNLQLAHLLIEGGVRPINAHYCTRINKRYLGQLWLDIHGYPARGQTPLFSHVYVKTRKTVRQGTIFVMLLRQYEQTFADLKEPGVFLFVYERYKYAMADSESCLSMEVAFYLWRDYLNKTVWIRSCTQCKAGYLYSSSPDAAQSMRTCQFCRLVKASKNRKKPDGTIITQATITE
>NC_015850.1|WP_148262222.1|2114763_2114964_-|hypothetical-protein
MMMKDYATHERRELIGLGHEQVERELRRSPALFVLTNFRRLKRGNVRMAMGSLAGFYKAVVQRIVG
>NC_015850.1|WP_148262221.1|2113963_2114758_-|hypothetical-protein
MRKESLVVARESTHASGPVGHPGFNSRRKLRLAAYGVVFFGFVGLTMTAGNVHMGKVWPLGSHATTHPLPPENRVPPAGRKPDAVEETSQAVPHWVAAGIIQLTHQLHRETLVAKHDQSALVAARSQATKYQQTIGNLQQQEHSLQTQVLQLRMRMQQIQMRSRAPSSVSLPGHSQLDRTGQSGIVALQAQSKPVPKKARVVPSVAQKWLAIAVHDGKAVIQTPAGQVVMVHVGSIVDGTKITAINPQKQSVQISGNRWMYLPK
>NC_015850.1|WP_041636474.1|2113656_2113953_-|hypothetical-protein
MTDMISGADRRVVMEKNVLGAMILEQEKMLENAQHRIVVELCRSRLDLMRHIDQRLTVDRAMICAIPSVAVVQALRALRQIEWVGGRMLWSGRALNRS
>NC_015850.1|WP_012387019.1|2112438_2113653_-|ISL3-family-transposase
MVPEELFSLALGLVPPWLVDHVTFTVEEKRLDLHINFPKGSRFACSVCGEECPVHDTRDHTWRHMDFFQHEAYLHARVPRVKCQEHGVHQISVPWAREGSRFTLLFEALIMTLVREMPVLTAARMVGETDKLLWRVIDHYVPEARAAVDMANVHAVGVDETSSRHGHDYITLFVDLNARRLLFATPGKDAKTFEKFSADLQAHGGSAEAITDVSMDLSPAFQKGAAEHLPNAEITFDRFHLMKLVNEAVDDVRKGEVLTQPNLKKTRWLWLKNDCNLKMKQKEKLQELLKDQNLKTAQAYQFRLTFQDIFTIKNRHQGATLLKAWLENARTSDLPPIVRVAYTIMNHWDGVLRWFESQITNGILEGFNSLIQSAKAKARGYRTHKNFINMAYLILGKLDLRLPT
>NC_015850.1|WP_014003218.1|2112046_2112367_-|hypothetical-protein
MDKDTEQLVAAYADKEEFETAYQEIVQRAELEKKKWFGQRKAAALFEEAAKAAAANVEACERILALRKRLLIHENGLRQGQKKILSLIEEFIERYQERDKSVSEVA
>NC_015850.1|WP_041636472.1|2111821_2112037_-|helix-turn-helix-domain-containing-protein
MSEHMGWPIFMRTKTAAQFLGVSQATIYRWIREGKLCEPKQVSAGIKGWHQQDLVDFANKMLGKTTHNVNG
>NC_015850.1|WP_014003215.1|2111195_2111825_+|EAL-domain-containing-protein
MIEKAYRLEPIIDLSIGQPIGHELLAGATACPTWTDPEWRGWYAHLSEEIPRLAKRVDGLIFLNVSGDQLLDSHISRSLRALREFAPRIVFEWIEQSFHDASLIQVLVKLNFLRGLGFAVAIDDIGASHGVDGLGRAGIVKAEFCKIDGQYFQARRGLGPDSLRGLVQHLSHGGSRIIIEWIETEDDLYLATEAGAHLGQGFLWSRSKD
>NC_015850.1|WP_148262223.1|2118333_2118597_-|hypothetical-protein
MSLMRAIPLCNRDNPNWRLPPLRWDWSLRCCRFAAVTPRTMRNYRDEFLSAMKRSRAAKQVGKTLCPTGQSFALLPLVVFLLALLSV
>NC_015850.1|WP_041636482.1|2118644_2118866_+|hypothetical-protein
MPGARRIVTLVPIVLCLEVRAQDDAIDVLALLLRERFTESENEARKVGPRLLNAPAGTKRPTSHRPPATIAKF
>NC_015850.1|WP_014003226.1|2119050_2119317_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MSTTDTYVRARIDSRTKERAADALEAMGLSISDAIRLLMLRIAEERRMPFDVKVPNATTRKAIAELEAGKGKRFAGVDDLMADLHADD
>NC_015850.1|WP_041636484.1|2119303_2119585_+|type-II-toxin-antitoxin-system-YafQ-family-toxin
MRTIDRSSAFKRDYRRETKGRHRATLDEDFKRVLVALATDQPLDARYRDHDLSGDWAGYRECHIKPDLLLIYRKSDADTLKLARLGSHSELFD
>NC_015850.1|WP_014003228.1|2119691_2120918_-|IS110-family-transposase
MELQPLFQRVIGLDIHQAQVTACAMLTEPDGSVTIERRQFGAFQRDRRKLAQWCASHRPDTVVMESTGIYWKSPYAALEKVGIQAQVVNARHVKHVPGRKTDVGDAEWLATLARAGLLRGSFVPPAQLRELRLIARQRQKLVGMLSSEKNRLHKVLTDGGIRLGVVVSDIHGQSARAMIHALIQGDSPESVLRLASRRLKASQEELLDALQGELTASHRFVLEEMLRHIEHLEAQIARFDAHLLEGLEPQKKALELLQTLPGIDVVGAALLLVEIGDDMSVFGSANRLASWTGLCPGNNESAGKRKSGRIRKGNPYVRRILCECAHAASRTQCALRAKFQSLVVRRGHKRSIIALAHKMLRIIYFMLSHGTYYRDADTDYEALSVQRNASRWIKKLIEFGYLSQEQLA
>NC_015850.1|WP_148262224.1|2121609_2121774_-|helix-turn-helix-domain-containing-protein
MRTLGEKASGASRRASREQQRATARLMQAKGMTQQEIADALGVPQQTISRWLTR
>NC_015850.1|WP_082177438.1|2121736_2122039_-|primase-C-terminal-domain-containing-protein
MLGLERDSGLLGTQRLPRWRKAVLGHIEALNGQFQRPLPYSEVKAIAKSIATWTWKKITPQGLRELIERTHSPEKQRERGKLATNQAEFANTGGKGQRRI
>NC_015850.1|WP_187288623.1|2122227_2122365_+|hypothetical-protein
MMAIGGFPDIFGHRAKDDSAGVGNGWRHAGEIKRKKTAFIAPKDV
>NC_015850.1|WP_014003230.1|2122414_2123371_+|hypothetical-protein
MNEALATTEGAVLEGEGDQPEVMEGVEPETDSGAIPDEAGPKAEVSEGTDTSSAIGTAEAKVVEPAVASTGVAEQDKRRERTVRTPKRKPNPRYVLIDMPREKRTNSRAGIKRTVRLAGKISQEMFFRTYPKVSDANYFLERIYPGMVLTRKGPDTAVVKEGFEAITEFWKRLYSDYEEKLSSMVLSVKERLESEGVDPAGVEPNFSEPLEEEALVTSRMDQRYIGLLEAVDEADGFISIAAFYDVYTPEEERRLQGEIRYGCLVLYRNTVRSSFETSLLLRTGKTSEMRRAEKEAREALAAKPEEGMQTEAGGERSS
>NC_015850.1|WP_014003231.1|2123398_2124211_+|SET-domain-containing-protein
MKVLPFDSSSLFIPACERWKREALAISKQEYLGDMLRIHTLLESARNPKTILRYFGLQGDLSQDRAFDLVGDIQMQVFTEMLAITGEEYRIDWSRQDGAFCLWYRHRDHRRDATRDLHFVQTHTKALFDGAEIRNSPLHGFGLFALREWKAGDVLCARLDGQVLSHDEYELLQSRLAPGLGRMRGFFFMEWNALPNDKLLARPFRTTYSYINHSVQPNLAVKDLSLVAVRDIHAEEEFTLDYRLEPLPRGYFETPYSGYLTPVDWDGRNV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015850_3	3.10\|1234705\|33\|NC_015850\|CRT,CRISPRCasFinder,PILER-CR	1234705-1234737	33	NC_010600	Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence	40877-40909	0	1.0
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	KT373978	Mycobacterium phage Ukulele, complete genome	73462-73488	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MF668277	Mycobacterium phage MadamMonkfish, complete genome	73903-73929	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MG099953	Mycobacterium phage Youngblood, complete genome	74245-74271	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MF919506	Mycobacterium phage FireRed, complete genome	74566-74592	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MK359320	Mycobacterium phage Cookies, complete genome	74689-74715	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MN096364	Mycobacterium phage Tomaszewski, complete genome	73056-73082	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MH590587	Mycobacterium phage xkcd, complete genome	75264-75290	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	KF493883	Mycobacterium phage Mosby, complete genome	72882-72908	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MH513978	Mycobacterium phage Phaja, complete genome	74021-74047	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	KY549152	Mycobacterium phage Maxxinista, complete genome	73273-73299	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MF919529	Mycobacterium phage Sassay, complete genome	71844-71870	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MH077579	Mycobacterium phage Halley, complete genome	111540-111566	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MH513972	Mycobacterium phage IHOP, complete genome	74016-74042	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MH669017	Mycobacterium phage Zelink, complete genome	110929-110955	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MH536827	Mycobacterium phage Simpliphy, complete genome	73714-73740	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	NC_022065	Mycobacterium phage Contagion, complete genome	72882-72908	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MH020247	Mycobacterium phage MPhalcon, complete genome	73644-73670	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MH576956	Mycobacterium phage Inca, complete genome	72213-72239	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	NC_022969	Mycobacterium phage PhatBacter, complete genome	74566-74592	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	KF562099	Mycobacterium phage Bruin, complete genome	72559-72585	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	JF937091	Mycobacterium phage Bask21, complete genome	73346-73372	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	JN006062	Mycobacterium phage Rakim, complete genome	74055-74081	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	KF279417	Mycobacterium phage Quink, complete genome	74623-74649	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MH399774	Mycobacterium phage DoctorDiddles, complete genome	73418-73444	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MN586017	Mycobacterium phage OrionPax, complete genome	73461-73487	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MF919535	Mycobacterium phage Terminus, complete genome	74518-74544	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	NC_022976	Mycobacterium phage Nala, complete genome	73933-73959	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	NC_021305	Mycobacterium phage Murphy, complete genome	74230-74256	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MF919540	Mycobacterium phage Willez, complete genome	72925-72951	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	MT522005	Mycobacterium phage Misfit, complete genome	74518-74544	6	0.778
NC_015850_3	3.7\|1234526\|27\|NC_015850\|CRT,CRISPRCasFinder	1234526-1234552	27	KC691255	Mycobacterium phage Dumbo, complete genome	74085-74111	6	0.778
NC_015850_4	4.3\|1236463\|33\|NC_015850\|CRISPRCasFinder,CRT	1236463-1236495	33	MT498041	Mycobacterium phage KingCyrus, complete genome	15016-15048	6	0.818
NC_015850_4	4.3\|1236463\|33\|NC_015850\|CRISPRCasFinder,CRT	1236463-1236495	33	MF919490	Mycobacterium phage Anselm, complete genome	14728-14760	6	0.818
NC_015850_4	4.3\|1236463\|33\|NC_015850\|CRISPRCasFinder,CRT	1236463-1236495	33	KU985095	Mycobacterium phage ChipMunk, complete genome	15016-15048	6	0.818
NC_015850_4	4.3\|1236463\|33\|NC_015850\|CRISPRCasFinder,CRT	1236463-1236495	33	KU985093	Mycobacterium phage EvilGenius, complete genome	15026-15058	6	0.818
NC_015850_4	4.5\|1236585\|33\|NC_015850\|CRISPRCasFinder,CRT	1236585-1236617	33	NZ_CP027406	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence	78448-78480	6	0.818
NC_015850_4	4.5\|1236585\|33\|NC_015850\|CRISPRCasFinder,CRT	1236585-1236617	33	NC_008386	Roseobacter denitrificans OCh 114 plasmid pTB1, complete sequence	91355-91387	6	0.818
NC_015850_4	4.6\|1236646\|26\|NC_015850\|CRISPRCasFinder,CRT	1236646-1236671	26	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	129967-129992	6	0.769
NC_015850_3	3.16\|1235071\|33\|NC_015850\|CRT,CRISPRCasFinder,PILER-CR	1235071-1235103	33	MN813693	Mycobacterium phage Imvubu, complete genome	42725-42757	7	0.788
NC_015850_4	4.7\|1236700\|33\|NC_015850\|CRISPRCasFinder,CRT	1236700-1236732	33	NZ_CP050105	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence	185166-185198	8	0.758
NC_015850_4	4.7\|1236700\|33\|NC_015850\|CRISPRCasFinder,CRT	1236700-1236732	33	NZ_CP050110	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence	185168-185200	8	0.758
NC_015850_3	3.16\|1235071\|33\|NC_015850\|CRT,CRISPRCasFinder,PILER-CR	1235071-1235103	33	MN585972	Arthrobacter phage Edmundo, complete genome	18488-18520	9	0.727
NC_015850_4	4.3\|1236463\|33\|NC_015850\|CRISPRCasFinder,CRT	1236463-1236495	33	MK919472	Mycobacterium phage Benvolio, complete genome	14718-14750	9	0.727
NC_015850_4	4.3\|1236463\|33\|NC_015850\|CRISPRCasFinder,CRT	1236463-1236495	33	KF981601	Mycobacterium phage Echild, complete genome	14718-14750	9	0.727
NC_015850_4	4.4\|1236524\|33\|NC_015850\|CRISPRCasFinder,CRT	1236524-1236556	33	MF417852	Uncultured Caudovirales phage clone 10S_16, partial genome	3503-3535	9	0.727
NC_015850_4	4.7\|1236700\|33\|NC_015850\|CRISPRCasFinder,CRT	1236700-1236732	33	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	71949-71981	9	0.727

1. spacer 3.10|1234705|33|NC_015850|CRT,CRISPRCasFinder,PILER-CR matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtattattcaaggtcgtagacgctttcatgac	CRISPR spacer
ggtattattcaaggtcgtagacgctttcatgac	Protospacer
*********************************

2. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to KT373978 (Mycobacterium phage Ukulele, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

3. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MF668277 (Mycobacterium phage MadamMonkfish, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

4. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MG099953 (Mycobacterium phage Youngblood, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

5. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MF919506 (Mycobacterium phage FireRed, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

6. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MK359320 (Mycobacterium phage Cookies, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

7. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MN096364 (Mycobacterium phage Tomaszewski, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

8. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MH590587 (Mycobacterium phage xkcd, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

9. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to KF493883 (Mycobacterium phage Mosby, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

10. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MH513978 (Mycobacterium phage Phaja, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

11. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to KY549152 (Mycobacterium phage Maxxinista, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

12. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MF919529 (Mycobacterium phage Sassay, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

13. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MH077579 (Mycobacterium phage Halley, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

14. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MH513972 (Mycobacterium phage IHOP, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

15. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MH669017 (Mycobacterium phage Zelink, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

16. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MH536827 (Mycobacterium phage Simpliphy, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

17. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to NC_022065 (Mycobacterium phage Contagion, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

18. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MH020247 (Mycobacterium phage MPhalcon, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

19. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MH576956 (Mycobacterium phage Inca, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

20. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to NC_022969 (Mycobacterium phage PhatBacter, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

21. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to KF562099 (Mycobacterium phage Bruin, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

22. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to JF937091 (Mycobacterium phage Bask21, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

23. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to JN006062 (Mycobacterium phage Rakim, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

24. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to KF279417 (Mycobacterium phage Quink, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

25. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MH399774 (Mycobacterium phage DoctorDiddles, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

26. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MN586017 (Mycobacterium phage OrionPax, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

27. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MF919535 (Mycobacterium phage Terminus, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

28. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to NC_022976 (Mycobacterium phage Nala, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

29. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to NC_021305 (Mycobacterium phage Murphy, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

30. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MF919540 (Mycobacterium phage Willez, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

31. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to MT522005 (Mycobacterium phage Misfit, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

32. spacer 3.7|1234526|27|NC_015850|CRT,CRISPRCasFinder matches to KC691255 (Mycobacterium phage Dumbo, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**..

33. spacer 4.3|1236463|33|NC_015850|CRISPRCasFinder,CRT matches to MT498041 (Mycobacterium phage KingCyrus, complete genome) position: , mismatch: 6, identity: 0.818

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gtcgcctccttacgagacctcgccgccgatggc	Protospacer
* **  ************** *******.***

34. spacer 4.3|1236463|33|NC_015850|CRISPRCasFinder,CRT matches to MF919490 (Mycobacterium phage Anselm, complete genome) position: , mismatch: 6, identity: 0.818

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gccgcctccttacgagacctcgccgccgatggc	Protospacer
* **  ************** *******.***

35. spacer 4.3|1236463|33|NC_015850|CRISPRCasFinder,CRT matches to KU985095 (Mycobacterium phage ChipMunk, complete genome) position: , mismatch: 6, identity: 0.818

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gtcgcctccttacgagacctcgccgccgatggc	Protospacer
* **  ************** *******.***

36. spacer 4.3|1236463|33|NC_015850|CRISPRCasFinder,CRT matches to KU985093 (Mycobacterium phage EvilGenius, complete genome) position: , mismatch: 6, identity: 0.818

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gtcgcctccttacgagacctcgccgccgatggc	Protospacer
* **  ************** *******.***

37. spacer 4.5|1236585|33|NC_015850|CRISPRCasFinder,CRT matches to NZ_CP027406 (Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.818

tagc-cccgcttgcctgccagtccttgcgccagc	CRISPR spacer
-agcacctgcttgcctgccagaccttgcgcagga	Protospacer
 *** **.************* ******** .*

38. spacer 4.5|1236585|33|NC_015850|CRISPRCasFinder,CRT matches to NC_008386 (Roseobacter denitrificans OCh 114 plasmid pTB1, complete sequence) position: , mismatch: 6, identity: 0.818

tagc-cccgcttgcctgccagtccttgcgccagc	CRISPR spacer
-agcacctgcttgcctgccagaccttgcgcagga	Protospacer
 *** **.************* ******** .*

39. spacer 4.6|1236646|26|NC_015850|CRISPRCasFinder,CRT matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 6, identity: 0.769

caggagcaggcatggctatctatcac	CRISPR spacer
gtcgagcaggcatggatatctatctg	Protospacer
   ************ ********

40. spacer 3.16|1235071|33|NC_015850|CRT,CRISPRCasFinder,PILER-CR matches to MN813693 (Mycobacterium phage Imvubu, complete genome) position: , mismatch: 7, identity: 0.788

cccagattcgtgttgccggtggccgacttgtgg	CRISPR spacer
cccagtttcgtcttgccggtggccatccactgg	Protospacer
***** ***** ************. *.  ***

41. spacer 4.7|1236700|33|NC_015850|CRISPRCasFinder,CRT matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 8, identity: 0.758

gggttatgggcctcgagaatgtgctcctcgccg	CRISPR spacer
tggcaagcagcctcaagaatgtgctccacgccg	Protospacer
 **. *  .*****.************ *****

42. spacer 4.7|1236700|33|NC_015850|CRISPRCasFinder,CRT matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 8, identity: 0.758

gggttatgggcctcgagaatgtgctcctcgccg	CRISPR spacer
tggcaagcagcctcaagaatgtgctccacgccg	Protospacer
 **. *  .*****.************ *****

43. spacer 3.16|1235071|33|NC_015850|CRT,CRISPRCasFinder,PILER-CR matches to MN585972 (Arthrobacter phage Edmundo, complete genome) position: , mismatch: 9, identity: 0.727

cccagattcgtgttgccggtggccgacttgtgg	CRISPR spacer
tccagcttcgtggtgccggtggccggggtggcc	Protospacer
.**** ****** ************.  **

44. spacer 4.3|1236463|33|NC_015850|CRISPRCasFinder,CRT matches to MK919472 (Mycobacterium phage Benvolio, complete genome) position: , mismatch: 9, identity: 0.727

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gcgccccccttacgagacctcgccgccgatggc	Protospacer
*     .************* *******.***

45. spacer 4.3|1236463|33|NC_015850|CRISPRCasFinder,CRT matches to KF981601 (Mycobacterium phage Echild, complete genome) position: , mismatch: 9, identity: 0.727

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gcgccccccttacgagacctcgccgccgatggc	Protospacer
*     .************* *******.***

46. spacer 4.4|1236524|33|NC_015850|CRISPRCasFinder,CRT matches to MF417852 (Uncultured Caudovirales phage clone 10S_16, partial genome) position: , mismatch: 9, identity: 0.727

cgttccagtctgtcgctccctcggggatctcaa	CRISPR spacer
gtggccagtcggtcgctccctcgtggatattat	Protospacer
    ****** ************ **** *.*

47. spacer 4.7|1236700|33|NC_015850|CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.727

gggttatgggcctcgagaatgtgctcctcgccg	CRISPR spacer
tggcaggcagcctcaagaatgtgctccacgccg	Protospacer
 **. .  .*****.************ *****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

97163 : 152905

Burkholderia_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004872674.1\|97163_98210_-\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	8.7e-13	25.1
WP_014002076.1\|98389_99514_-	Fic family protein	NA	NA	NA	NA
WP_004869991.1\|100326_101781_+	DUF3375 domain-containing protein	NA	NA	NA	NA
WP_041635726.1\|101811_102474_+	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_004870006.1\|102466_105859_+	hypothetical protein	NA	NA	NA	NA
WP_014002078.1\|105855_107049_+	hypothetical protein	NA	NA	NA	NA
WP_004870010.1\|107111_107375_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_004870013.1\|107386_107728_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_004870015.1\|108287_109595_-	ParB/RepB/Spo0J family partition protein	A0A160DCL1	Gordonia_phage	3.7e-05	35.1
WP_004870017.1\|109587_110367_-	ParA family protein	NA	NA	NA	NA
WP_004870019.1\|110363_110795_-	hypothetical protein	NA	NA	NA	NA
WP_038472437.1\|110887_111433_-	S26 family signal peptidase	NA	NA	NA	NA
WP_014002082.1\|111471_111756_-	hypothetical protein	NA	NA	NA	NA
WP_038471395.1\|111762_111987_-	hypothetical protein	NA	NA	NA	NA
WP_038471398.1\|111983_112259_-	hypothetical protein	NA	NA	NA	NA
WP_004870028.1\|112258_113458_-	conjugal transfer protein TraB	NA	NA	NA	NA
WP_014002084.1\|113867_114188_-	hypothetical protein	NA	NA	NA	NA
WP_169737325.1\|115485_116430_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	3.2e-75	49.7
WP_038472440.1\|116935_117391_-	DsrE family protein	NA	NA	NA	NA
WP_004873230.1\|117451_118813_-	hypothetical protein	NA	NA	NA	NA
WP_038471414.1\|118998_119478_+	DUF302 domain-containing protein	NA	NA	NA	NA
WP_141738303.1\|119571_120042_-	DsrE family protein	NA	NA	NA	NA
WP_014002087.1\|120195_120750_-	FUSC family protein	NA	NA	NA	NA
WP_004870041.1\|120786_121692_-	DUF2236 domain-containing protein	NA	NA	NA	NA
WP_077272838.1\|121947_122244_+	hypothetical protein	NA	NA	NA	NA
WP_038472443.1\|122224_122566_+	hypothetical protein	NA	NA	NA	NA
WP_014002092.1\|123789_124380_+	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	2.4e-12	43.8
WP_148262181.1\|124607_124952_-	hypothetical protein	NA	NA	NA	NA
WP_148262236.1\|125242_125902_+	hypothetical protein	NA	NA	NA	NA
WP_014002096.1\|126142_126472_-	hypothetical protein	NA	NA	NA	NA
WP_141738383.1\|126557_127205_+	hypothetical protein	NA	NA	NA	NA
WP_004870056.1\|127310_127754_+	DedA family protein	NA	NA	NA	NA
WP_187288659.1\|128556_129300_+	hypothetical protein	NA	NA	NA	NA
WP_014002102.1\|130408_131368_+	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	1.4e-81	51.1
WP_014002103.1\|131377_133018_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_169737323.1\|133271_134291_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014002105.1\|134848_135805_+	hypothetical protein	NA	NA	NA	NA
WP_004870074.1\|136275_137121_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	1.3e-64	48.5
WP_004870079.1\|140148_140847_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014002108.1\|141637_141730_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_014002109.1\|141726_143487_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_014002110.1\|143491_145552_+	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	1.4e-35	27.9
WP_004870087.1\|145562_146165_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_014002111.1\|146411_147593_+	porin	NA	NA	NA	NA
WP_014002112.1\|147683_147878_+	hypothetical protein	NA	NA	NA	NA
WP_077272696.1\|147923_148826_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	8.5e-33	36.5
WP_004870098.1\|149224_149674_+	hypothetical protein	NA	NA	NA	NA
WP_004870103.1\|150292_151870_+	potassium-transporting ATPase subunit A	NA	NA	NA	NA
WP_169737325.1\|151960_152905_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	3.2e-75	49.7

DBSCAN-SWA_2

158044 : 211416

Lysinibacillus_phage(18.18%)

integrase,transposase

attL 193113:193172|attR 221459:222760

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014002119.1\|158044_159100_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014002120.1\|159380_159866_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_049784599.1\|159868_160579_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_014002122.1\|160575_161235_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_041635730.1\|161926_162685_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	3.3e-14	30.2
WP_041635731.1\|162735_163326_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_041635732.1\|163418_163883_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_014002127.1\|164051_164723_+	type IV secretion system protein	NA	NA	NA	NA
WP_014002128.1\|164734_165907_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_014002129.1\|165903_166824_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_014002130.1\|166820_168137_+	conjugal transfer protein TrbI	NA	NA	NA	NA
WP_014002131.1\|168133_168406_+	hypothetical protein	NA	NA	NA	NA
WP_187288640.1\|168431_168758_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_041635734.1\|168754_168979_-	antitoxin MazE family protein	NA	NA	NA	NA
WP_041635735.1\|169173_171198_+	DNA topoisomerase 3	A0A1X9I6W8	Streptococcus_phage	1.1e-32	31.1
WP_148262184.1\|171194_171518_+	hypothetical protein	NA	NA	NA	NA
WP_049784600.1\|171514_172081_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_014002135.1\|172102_174457_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_014002136.1\|174678_175734_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014002137.1\|175887_177282_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_012387019.1\|177813_179028_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014002140.1\|180940_181840_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_049784601.1\|183082_183352_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_148262237.1\|183882_184902_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041636623.1\|184961_185132_+	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_187288641.1\|185710_186316_+	hypothetical protein	NA	NA	NA	NA
WP_014002147.1\|186370_187342_+	ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_014002148.1\|187343_189491_+	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA
WP_014002149.1\|189557_190196_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_014002150.1\|190375_190564_+	hypothetical protein	NA	NA	NA	NA
WP_187288642.1\|190585_191509_+	cytochrome C oxidase assembly protein	NA	NA	NA	NA
WP_014002151.1\|191524_192469_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
193113:193172	attL	NA	NA	NA	NA
WP_012387019.1\|193185_194400_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_041636625.1\|194609_195317_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_014002153.1\|195371_197417_+	EAL domain-containing protein	G3MA91	Bacillus_virus	1.9e-16	32.7
WP_187288643.1\|197800_197965_+\|transposase	transposase	NA	NA	NA	NA
WP_014002154.1\|198187_198598_+	chemotaxis response regulator CheY	Q56AR1	Bacillus_thuringiensis_phage	2.1e-07	30.7
WP_014002155.1\|198594_199080_+	hypothetical protein	NA	NA	NA	NA
WP_041635738.1\|199082_201062_+	chemotaxis protein CheA	NA	NA	NA	NA
WP_014002157.1\|201061_201661_+	hypothetical protein	NA	NA	NA	NA
WP_014002158.1\|201657_202404_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_014002159.1\|202513_203527_+	CZB domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.1e-10	44.2
WP_014002160.1\|203604_204570_+	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	6.5e-31	31.3
WP_014002161.1\|204566_205799_+	PAS domain S-box protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-13	38.4
WP_014002162.1\|205875_207948_+	EAL domain-containing protein	NA	NA	NA	NA
WP_014002163.1\|208458_209622_-\|integrase	tyrosine-type recombinase/integrase	W6MYA3	Pseudomonas_phage	5.8e-50	40.1
WP_014002164.1\|209892_211416_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	6.3e-28	29.9
221459:222760	attR	NA	NA	NA	NA

DBSCAN-SWA_3

216466 : 224636

Synechococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014002168.1\|216466_217498_-	GDP-mannose 4,6-dehydratase	A0A0E3F7G9	Synechococcus_phage	2.1e-99	56.6
WP_041636628.1\|217494_218379_-	GDP-mannose 4,6-dehydratase	G8DDL6	Micromonas_pusilla_virus	2.0e-18	31.5
WP_014002170.1\|218375_219527_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_014002171.1\|219526_220123_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012387019.1\|220230_221445_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014002172.1\|221448_221982_-	hypothetical protein	NA	NA	NA	NA
WP_014002173.1\|222148_223144_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_148262187.1\|223252_223408_-	GDP-mannose 4,6-dehydratase	M1HKY0	Acanthocystis_turfacea_Chlorella_virus	3.4e-06	55.6
WP_187288644.1\|223404_223893_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3IB21	Synechococcus_phage	9.9e-20	38.3
WP_014002174.1\|223956_224253_+	hypothetical protein	NA	NA	NA	NA
WP_148262189.1\|224228_224636_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-12	35.4

DBSCAN-SWA_4

477295 : 522293

Lysinibacillus_phage(21.43%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_187288663.1\|477295_478558_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_004870606.1\|478554_479652_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	7.5e-07	39.7
WP_004870608.1\|479651_480524_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_004870609.1\|480507_481320_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA
WP_014002299.1\|481337_483311_+	dynamin family protein	NA	NA	NA	NA
WP_004870613.1\|483316_483568_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	3.0e-20	61.2
WP_004870615.1\|483605_484136_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.2e-25	41.1
WP_081254316.1\|484132_484696_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_004870620.1\|484796_486008_+	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	2.6e-13	32.3
WP_014002302.1\|486004_486673_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	1.2e-31	39.3
WP_004870624.1\|486669_487575_+	ABC transporter permease	NA	NA	NA	NA
WP_004870626.1\|487713_488571_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	2.5e-42	39.9
WP_004870628.1\|488567_488900_+	DsrE family protein	NA	NA	NA	NA
WP_014002303.1\|489064_490144_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_014002304.1\|490216_491542_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A173GFL6	Erwinia_phage	9.2e-44	29.1
WP_187288664.1\|491544_492075_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_014002306.1\|492086_493040_-	tyrosine recombinase XerC	A0A166YH27	Gordonia_phage	7.2e-14	36.2
WP_004870639.1\|493046_493736_-	DUF484 family protein	NA	NA	NA	NA
WP_014002307.1\|493732_494605_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_014002308.1\|494801_495716_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014002309.1\|495773_496508_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_014002310.1\|496520_496754_-	hypothetical protein	NA	NA	NA	NA
WP_014002311.1\|497224_498418_+	porin	NA	NA	NA	NA
WP_014002312.1\|498689_501425_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_014002313.1\|501503_502610_-	cellulase	NA	NA	NA	NA
WP_014002314.1\|502644_503370_-	cellulose biosynthesis protein BcsS	NA	NA	NA	NA
WP_014002315.1\|503386_505924_-	cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA	NA	NA	NA
WP_014002316.1\|505920_506604_-	hypothetical protein	NA	NA	NA	NA
WP_014002317.1\|506619_507495_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_012387019.1\|507528_508743_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_081254391.1\|508887_510573_-	UDP-forming cellulose synthase catalytic subunit	M1I518	Acanthocystis_turfacea_Chlorella_virus	2.2e-21	27.8
WP_014002319.1\|510836_511844_-	sodium:calcium antiporter	NA	NA	NA	NA
WP_014002320.1\|511918_512638_+	hypothetical protein	NA	NA	NA	NA
WP_014002321.1\|512717_514556_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.5e-57	35.6
WP_014002322.1\|514715_514919_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.1e-16	60.6
WP_103415101.1\|515313_516327_+	transporter	NA	NA	NA	NA
WP_187288646.1\|517709_517856_+	hypothetical protein	NA	NA	NA	NA
WP_012387019.1\|518429_519644_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014002330.1\|519929_520589_+	hypothetical protein	NA	NA	NA	NA
WP_014002331.1\|520650_521031_+	hypothetical protein	NA	NA	NA	NA
WP_012387019.1\|521078_522293_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8

DBSCAN-SWA_5

583714 : 596252

Staphylococcus_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014002384.1\|583714_585220_-	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	4.0e-11	23.1
WP_004870713.1\|585406_586276_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	5.0e-14	42.4
WP_004870714.1\|586384_586939_-	hypothetical protein	NA	NA	NA	NA
WP_014002386.1\|587981_589226_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.7e-95	53.2
WP_038472552.1\|589228_589720_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_014002387.1\|589730_590840_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.5e-42	33.6
WP_038471582.1\|590812_591469_+	riboflavin synthase	A0A1V0SE20	Indivirus	3.1e-16	34.6
WP_004870720.1\|591465_592599_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.9e-53	35.7
WP_004870721.1\|592591_593059_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-33	53.6
WP_187288648.1\|593062_593527_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_103415105.1\|593635_594199_+	sel1 repeat family protein	NA	NA	NA	NA
WP_004867332.1\|594219_594552_-	LapA family protein	NA	NA	NA	NA
WP_014002389.1\|594566_596252_-	2-polyprenylphenol 6-hydroxylase	A0A2N9QVT9	Dishui_lake_phycodnavirus	3.8e-34	27.9

DBSCAN-SWA_6

742924 : 789118

uncultured_virus(20.0%)

integrase,transposase

attL 742597:742618|attR 793198:793219

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
742597:742618	attL	NA	NA	NA	NA
WP_187288650.1\|742924_744175_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_187288651.1\|744342_746421_-	hypothetical protein	NA	NA	NA	NA
WP_014002449.1\|748017_748374_-	hypothetical protein	NA	NA	NA	NA
WP_049784620.1\|748355_748589_-	hypothetical protein	NA	NA	NA	NA
WP_041635926.1\|748804_750322_-	Fic family protein	NA	NA	NA	NA
WP_014002454.1\|750523_751777_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_014002453.1\|751776_752061_-	transcriptional regulator	NA	NA	NA	NA
WP_014002455.1\|752197_752554_+	hypothetical protein	NA	NA	NA	NA
WP_041635930.1\|753144_753444_+	hypothetical protein	NA	NA	NA	NA
WP_014002457.1\|754832_755453_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_014002458.1\|755710_755965_+	hypothetical protein	NA	NA	NA	NA
WP_041635939.1\|756007_756475_-	hypothetical protein	NA	NA	NA	NA
WP_041635942.1\|756508_756976_-	hypothetical protein	NA	NA	NA	NA
WP_187288652.1\|757008_757161_-	hypothetical protein	NA	NA	NA	NA
WP_004867663.1\|757901_758153_+	hypothetical protein	NA	NA	NA	NA
WP_014002462.1\|758285_759599_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_014002463.1\|759601_760396_+	ATP-binding protein	NA	NA	NA	NA
WP_014002464.1\|760392_760590_+	hypothetical protein	NA	NA	NA	NA
WP_014002465.1\|760805_761270_-	hypothetical protein	NA	NA	NA	NA
WP_014002466.1\|761653_762058_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	4.0e-51	75.8
WP_049784623.1\|762195_763158_+	hypothetical protein	NA	NA	NA	NA
WP_014002467.1\|763282_763633_-	hypothetical protein	NA	NA	NA	NA
WP_014002468.1\|763802_764207_-	hypothetical protein	NA	NA	NA	NA
WP_014002469.1\|764456_765734_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_014002470.1\|765723_766065_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014002471.1\|766231_766681_+	hypothetical protein	NA	NA	NA	NA
WP_014002472.1\|766910_767918_+	MarR family EPS-associated transcriptional regulator	NA	NA	NA	NA
WP_041635946.1\|768079_768487_+	hypothetical protein	NA	NA	NA	NA
WP_041635948.1\|768503_769382_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_049784625.1\|769378_771853_+	glycosyltransferase	NA	NA	NA	NA
WP_041635951.1\|771859_772648_+	ABC transporter permease	NA	NA	NA	NA
WP_041635953.1\|772648_773368_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_014002478.1\|774840_775896_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041635955.1\|775895_776099_+	hypothetical protein	NA	NA	NA	NA
WP_041635958.1\|776118_777153_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_082177278.1\|777728_778556_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	NA	NA	NA
WP_012387019.1\|778603_779818_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_082177279.1\|779848_780361_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.4e-19	33.5
WP_014002483.1\|780920_781235_+	hypothetical protein	NA	NA	NA	NA
WP_014002484.1\|781236_781479_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_014002485.1\|781685_785942_+	glycosyltransferase	A0A0E3FKP5	Synechococcus_phage	6.5e-06	39.4
WP_014002486.1\|785958_787809_+	asparagine synthase (glutamine-hydrolyzing)	A0A0G2Y369	Acanthamoeba_polyphaga_mimivirus	5.1e-32	29.2
WP_014002487.1\|788062_789118_+\|transposase	IS5 family transposase	NA	NA	NA	NA
793198:793219	attR	NA	NA	NA	NA

DBSCAN-SWA_7

984390 : 1073914

Lysinibacillus_phage(25.0%)

integrase,transposase

attL 1007979:1007993|attR 1029912:1029926

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012387019.1\|984390_985605_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_004871417.1\|985892_986165_-	hypothetical protein	NA	NA	NA	NA
WP_004871418.1\|986182_986746_-	DUF308 domain-containing protein	NA	NA	NA	NA
WP_103415006.1\|986820_987360_-	AAA family ATPase	NA	NA	NA	NA
WP_004871422.1\|987681_989910_+	ribonuclease R	Q0GXV6	Lactococcus_phage	4.1e-60	34.6
WP_004871423.1\|989916_990693_-	polyphosphate kinase 2	NA	NA	NA	NA
WP_004871425.1\|990705_992094_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
WP_038471696.1\|992297_993353_+	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_004871429.1\|993349_994105_-	competence/damage-inducible protein A	NA	NA	NA	NA
WP_004871430.1\|994089_994764_-	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_004871432.1\|994756_995794_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.8e-72	47.7
WP_004871436.1\|995963_996581_-	superoxide dismutase	NA	NA	NA	NA
WP_004871438.1\|996818_997523_+	hypothetical protein	NA	NA	NA	NA
WP_004871440.1\|997519_998401_+	YihY family inner membrane protein	NA	NA	NA	NA
WP_169737310.1\|998518_998959_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_004871445.1\|998939_999125_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_004871447.1\|999152_1000178_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_004871450.1\|1000174_1001119_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_004871452.1\|1001155_1002094_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_041636811.1\|1002102_1002840_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_004871455.1\|1002933_1003182_+	acyl carrier protein	A0A1S5R3K8	Pseudomonas_phage	3.2e-06	43.0
WP_004871456.1\|1003221_1004463_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_158007121.1\|1004470_1005346_+	aminotransferase class IV	NA	NA	NA	NA
WP_004871466.1\|1005333_1006341_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_004871467.1\|1006333_1006987_+	dTMP kinase	W8D0J5	Erwinia_phage	2.0e-15	29.6
WP_014002569.1\|1006979_1007990_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_014002570.1\|1007973_1008327_+	PilZ domain-containing protein	NA	NA	NA	NA
1007979:1007993	attL	NA	NA	NA	NA
WP_014002571.1\|1008591_1009602_+\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	3.8e-66	41.3
WP_014002572.1\|1009836_1012197_-	DotA/TraY family protein	NA	NA	NA	NA
WP_041636052.1\|1012256_1012478_-	hypothetical protein	NA	NA	NA	NA
WP_004868469.1\|1012596_1013859_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	1.4e-89	45.3
WP_014002573.1\|1013903_1015793_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_014002574.1\|1015807_1016131_-	hypothetical protein	NA	NA	NA	NA
WP_041636059.1\|1016197_1019416_-	relaxase domain-containing protein	NA	NA	NA	NA
WP_014002576.1\|1019412_1019985_-	hypothetical protein	NA	NA	NA	NA
WP_041636062.1\|1019977_1020220_-	hypothetical protein	NA	NA	NA	NA
WP_014002536.1\|1020459_1021677_+\|transposase	ISL3-like element ISAtc2 family transposase	A0A2D1GQC1	Lysinibacillus_phage	6.4e-07	23.2
WP_012387019.1\|1021769_1022984_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014002577.1\|1022941_1025206_-	toprim domain-containing protein	NA	NA	NA	NA
WP_014002578.1\|1025202_1026114_-	hypothetical protein	NA	NA	NA	NA
WP_148262191.1\|1026110_1026614_-	hypothetical protein	NA	NA	NA	NA
WP_014002579.1\|1027149_1028937_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_014002580.1\|1030210_1030996_+	hypothetical protein	NA	NA	NA	NA
1029912:1029926	attR	NA	NA	NA	NA
WP_014002136.1\|1031388_1032444_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_081254375.1\|1032609_1033521_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041636067.1\|1033676_1035371_+	NADH dehydrogenase	NA	NA	NA	NA
WP_041636069.1\|1035367_1037773_+	DUF2309 domain-containing protein	NA	NA	NA	NA
WP_014002584.1\|1037859_1038906_+	hypothetical protein	NA	NA	NA	NA
WP_041636073.1\|1038943_1039816_+	hypothetical protein	NA	NA	NA	NA
WP_041636817.1\|1039902_1041588_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_014002588.1\|1042155_1043142_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	2.8e-37	31.8
WP_014002589.1\|1043162_1043990_+	hypothetical protein	NA	NA	NA	NA
WP_041636821.1\|1044699_1045089_+	DUF2784 domain-containing protein	NA	NA	NA	NA
WP_014002140.1\|1045450_1046350_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_077272688.1\|1046411_1047098_-	phosphoribosyl transferase	NA	NA	NA	NA
WP_041636076.1\|1047361_1047703_-	DUF962 domain-containing protein	NA	NA	NA	NA
WP_014002594.1\|1048471_1049527_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_049784635.1\|1049689_1050268_-	AmmeMemoRadiSam system protein A	NA	NA	NA	NA
WP_014002596.1\|1050264_1051065_-	AmmeMemoRadiSam system protein B	NA	NA	NA	NA
WP_014002597.1\|1051191_1052340_+	AmmeMemoRadiSam system radical SAM enzyme	NA	NA	NA	NA
WP_081254308.1\|1052485_1052704_-	hypothetical protein	NA	NA	NA	NA
WP_077272797.1\|1053067_1053592_-	redoxin domain-containing protein	NA	NA	NA	NA
WP_014002598.1\|1053647_1055750_-	glucan 1,4-alpha-glucosidase	NA	NA	NA	NA
WP_041636844.1\|1055746_1056205_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_014002599.1\|1056213_1056870_-	organomercurial lyase	NA	NA	NA	NA
WP_014002600.1\|1056886_1058551_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	5.8e-43	29.7
WP_014002601.1\|1058672_1059017_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_041636087.1\|1059056_1059482_-	mercury transporter MerT	NA	NA	NA	NA
WP_082177288.1\|1059934_1060408_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_014002938.1\|1060339_1060657_-	hypothetical protein	NA	NA	NA	NA
WP_014002603.1\|1060640_1062203_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-44	30.3
WP_148262189.1\|1062211_1062619_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-12	35.4
WP_004867952.1\|1062594_1062891_-	hypothetical protein	NA	NA	NA	NA
WP_014002165.1\|1063146_1063932_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.7e-32	35.6
WP_014002164.1\|1063940_1065464_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	6.3e-28	29.9
WP_014002604.1\|1065695_1066400_+	hypothetical protein	NA	NA	NA	NA
WP_103415014.1\|1066638_1068537_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_064306246.1\|1068538_1069168_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_014002606.1\|1069169_1069520_-	DsrE family protein	NA	NA	NA	NA
WP_141738761.1\|1069516_1069864_-	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_014002607.1\|1069860_1070457_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_014002608.1\|1070453_1071167_-	putative DNA-binding domain-containing protein	NA	NA	NA	NA
WP_014002609.1\|1071159_1072044_-	DUF692 domain-containing protein	NA	NA	NA	NA
WP_014002610.1\|1072148_1072436_-	DUF2282 domain-containing protein	NA	NA	NA	NA
WP_012387019.1\|1072699_1073914_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8

DBSCAN-SWA_8

1101151 : 1148698

Lysinibacillus_phage(22.22%)

integrase,transposase

attL 1100599:1100621|attR 1156357:1156379

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1100599:1100621	attL	NA	NA	NA	NA
WP_103415111.1\|1101151_1102171_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_082177451.1\|1102192_1102426_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_014002464.1\|1103451_1103649_-	hypothetical protein	NA	NA	NA	NA
WP_014002463.1\|1103645_1104440_-	ATP-binding protein	NA	NA	NA	NA
WP_014002462.1\|1104442_1105756_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_004867663.1\|1105888_1106140_-	hypothetical protein	NA	NA	NA	NA
WP_014002631.1\|1106497_1107409_-	outer membrane porin, OprD family	NA	NA	NA	NA
WP_014002632.1\|1107513_1108419_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_041636112.1\|1109004_1109289_-	YrhK family protein	NA	NA	NA	NA
WP_014002634.1\|1110641_1111646_+	Fic family protein	D7RWK9	Brochothrix_phage	2.2e-05	24.8
WP_014002635.1\|1111829_1112162_+	hypothetical protein	NA	NA	NA	NA
WP_012387019.1\|1112582_1113797_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014002637.1\|1113798_1114032_+	hypothetical protein	NA	NA	NA	NA
WP_041636118.1\|1114012_1116418_+	DEAD/DEAH box helicase family protein	Q8QNK6	Ectocarpus_siliculosus_virus	1.1e-29	31.0
WP_187288655.1\|1116857_1117070_-	hypothetical protein	NA	NA	NA	NA
WP_148262194.1\|1117147_1117495_+	hypothetical protein	NA	NA	NA	NA
WP_014002639.1\|1117496_1117796_+	hypothetical protein	NA	NA	NA	NA
WP_014002640.1\|1117886_1119131_+	NAD-binding protein	NA	NA	NA	NA
WP_041636126.1\|1119300_1119567_-	hypothetical protein	NA	NA	NA	NA
WP_187288656.1\|1119864_1120197_+	hypothetical protein	NA	NA	NA	NA
WP_041636129.1\|1120286_1120682_+	hypothetical protein	NA	NA	NA	NA
WP_014002645.1\|1120678_1122862_+	ATP-dependent RecD-like DNA helicase	A0A1P8DII4	Virus_Rctr197k	1.5e-51	33.1
WP_014002646.1\|1122934_1123504_-	ANTAR domain-containing protein	NA	NA	NA	NA
WP_081254399.1\|1123509_1123869_-	CbiX/SirB N-terminal domain-containing protein	NA	NA	NA	NA
WP_049784639.1\|1123865_1124657_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_041636133.1\|1124670_1125687_-	DNA-binding protein YbiB	NA	NA	NA	NA
WP_014002648.1\|1125683_1128446_-	nitrate reductase	NA	NA	NA	NA
WP_041636914.1\|1128442_1128763_-	nitrite reductase small subunit NirD	NA	NA	NA	NA
WP_014002650.1\|1128767_1131215_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014002651.1\|1131435_1132680_-	alginate export family protein	NA	NA	NA	NA
WP_014002652.1\|1132750_1134151_-	NarK/NasA family nitrate transporter	NA	NA	NA	NA
WP_014002653.1\|1134442_1135612_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_082177292.1\|1135820_1136384_-	hypothetical protein	NA	NA	NA	NA
WP_187288667.1\|1136510_1137455_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	4.7e-74	48.7
WP_014002656.1\|1138048_1138396_+	hypothetical protein	A0A2H4PDG5	Mycobacterium_phage	2.9e-05	34.8
WP_014002657.1\|1138476_1140633_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	1.2e-27	25.3
WP_014002658.1\|1140629_1141265_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_148262195.1\|1141261_1142605_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_041636141.1\|1142601_1143495_+	hypothetical protein	NA	NA	NA	NA
WP_014002536.1\|1144577_1145795_+\|transposase	ISL3-like element ISAtc2 family transposase	A0A2D1GQC1	Lysinibacillus_phage	6.4e-07	23.2
WP_148262196.1\|1146030_1146804_+	hypothetical protein	NA	NA	NA	NA
WP_014002164.1\|1147174_1148698_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	6.3e-28	29.9
1156357:1156379	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1568705 : 1673538

Lysinibacillus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014002536.1\|1568705_1569923_+\|transposase	ISL3-like element ISAtc2 family transposase	A0A2D1GQC1	Lysinibacillus_phage	6.4e-07	23.2
WP_148262207.1\|1569942_1570167_+	hypothetical protein	NA	NA	NA	NA
WP_004872038.1\|1570355_1572323_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	3.2e-93	41.1
WP_004872040.1\|1572392_1574918_-	alpha-glucan family phosphorylase	NA	NA	NA	NA
WP_004872041.1\|1575122_1576640_-	pyruvate kinase	NA	NA	NA	NA
WP_014002911.1\|1576639_1577563_-	aldolase	NA	NA	NA	NA
WP_004872044.1\|1577549_1578953_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_004872046.1\|1578996_1579965_-	1-phosphofructokinase family hexose kinase	NA	NA	NA	NA
WP_014002912.1\|1579957_1580881_-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase	NA	NA	NA	NA
WP_014002916.1\|1582438_1583374_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_004872054.1\|1583392_1584325_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_014002917.1\|1584350_1585298_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_014002918.1\|1585309_1586251_+	magnesium transporter CorA	NA	NA	NA	NA
WP_004872060.1\|1586261_1587179_+	magnesium transporter	NA	NA	NA	NA
WP_004872061.1\|1587200_1588394_-	divalent metal cation transporter	NA	NA	NA	NA
WP_004872063.1\|1588653_1589361_-	MgtC/SapB family protein	NA	NA	NA	NA
WP_103415044.1\|1589424_1589634_-	hypothetical protein	NA	NA	NA	NA
WP_014002921.1\|1590806_1591103_+	addiction module antitoxin RelB	A0A141GEX6	Brucella_phage	9.6e-26	60.0
WP_004872065.1\|1591108_1591402_+	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	1.4e-16	48.3
WP_103415125.1\|1591637_1592597_-	GTP-binding protein	NA	NA	NA	NA
WP_014002923.1\|1592920_1594546_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_049784663.1\|1594593_1594980_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_012387019.1\|1595011_1596226_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_004872071.1\|1596498_1596999_+	flagellar basal body-associated FliL family protein	NA	NA	NA	NA
WP_014002926.1\|1597008_1597869_+	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_004872078.1\|1597869_1598793_+	flagellar motor protein MotB	NA	NA	NA	NA
WP_014002927.1\|1598877_1600890_+	EAL domain-containing protein	NA	NA	NA	NA
WP_014002928.1\|1600955_1602269_+	diguanylate cyclase	NA	NA	NA	NA
WP_049784742.1\|1602372_1602996_+	hypothetical protein	NA	NA	NA	NA
WP_041637310.1\|1603318_1603885_+	acyltransferase	NA	NA	NA	NA
WP_014002931.1\|1603924_1605274_+	acyltransferase	NA	NA	NA	NA
WP_012387019.1\|1605321_1606536_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014002932.1\|1606569_1607319_+	acyltransferase	NA	NA	NA	NA
WP_014002165.1\|1607674_1608460_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.7e-32	35.6
WP_014002164.1\|1608468_1609992_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	6.3e-28	29.9
WP_187288670.1\|1611955_1612900_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	3.2e-75	50.0
WP_014002536.1\|1613022_1614240_+\|transposase	ISL3-like element ISAtc2 family transposase	A0A2D1GQC1	Lysinibacillus_phage	6.4e-07	23.2
WP_004867952.1\|1616148_1616445_+	hypothetical protein	NA	NA	NA	NA
WP_148262189.1\|1616420_1616828_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-12	35.4
WP_014002937.1\|1616836_1618399_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-44	30.3
WP_014002938.1\|1618382_1618700_+	hypothetical protein	NA	NA	NA	NA
WP_014002939.1\|1618750_1619434_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	9.0e-35	38.2
WP_004872102.1\|1620175_1621468_-	outer membrane porin, OprD family	NA	NA	NA	NA
WP_014002941.1\|1621546_1622707_-	TDT family transporter	NA	NA	NA	NA
WP_004872104.1\|1623665_1624745_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_014002943.1\|1624793_1626248_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_014002944.1\|1626523_1627255_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_070118376.1\|1629050_1629389_+	hypothetical protein	NA	NA	NA	NA
WP_141738532.1\|1629750_1630770_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014002948.1\|1631678_1634795_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_004868233.1\|1634819_1635902_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014003628.1\|1638882_1639599_+	response regulator	W8CYM9	Bacillus_phage	1.6e-29	33.5
WP_103415127.1\|1639628_1640915_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_148262209.1\|1641013_1642567_+	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_014002953.1\|1642580_1643666_+	quinol oxidase	NA	NA	NA	NA
WP_004872674.1\|1643788_1644835_-\|transposase	IS630 family transposase	A0A1V0SCG6	Indivirus	8.7e-13	25.1
WP_014002954.1\|1645057_1645471_-	sel1 repeat family protein	NA	NA	NA	NA
WP_014002539.1\|1646411_1647368_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	3.9e-76	49.7
WP_187288600.1\|1647418_1648249_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_014002957.1\|1648555_1649170_+	hypothetical protein	NA	NA	NA	NA
WP_004872144.1\|1649580_1651047_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_014002958.1\|1651124_1652219_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004872149.1\|1652358_1652685_+	DUF202 domain-containing protein	NA	NA	NA	NA
WP_014002959.1\|1652815_1655680_+	molybdopterin oxidoreductase family protein	NA	NA	NA	NA
WP_004872152.1\|1655740_1656433_+	4Fe-4S dicluster domain-containing protein	A0A077SL61	Escherichia_phage	7.5e-29	39.3
WP_004872154.1\|1656448_1657387_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_014002960.1\|1657414_1658122_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_038471818.1\|1658114_1658432_+	hypothetical protein	NA	NA	NA	NA
WP_004872160.1\|1658479_1658809_+	DUF202 domain-containing protein	NA	NA	NA	NA
WP_004872163.1\|1658828_1659155_+	hypothetical protein	NA	NA	NA	NA
WP_004872164.1\|1659214_1659541_+	hypothetical protein	NA	NA	NA	NA
WP_004872166.1\|1659537_1660536_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_004868279.1\|1660633_1660843_+	hypothetical protein	NA	NA	NA	NA
WP_004867952.1\|1661165_1661462_+	hypothetical protein	NA	NA	NA	NA
WP_148262189.1\|1661437_1661845_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	4.9e-12	35.4
WP_014002963.1\|1661853_1663416_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-44	30.3
WP_014002938.1\|1663399_1663717_+	hypothetical protein	NA	NA	NA	NA
WP_014002967.1\|1665936_1666926_-	hypothetical protein	NA	NA	NA	NA
WP_014002968.1\|1668202_1668565_+	hypothetical protein	NA	NA	NA	NA
WP_004872175.1\|1668707_1669121_+	hypothetical protein	NA	NA	NA	NA
WP_014002140.1\|1669272_1670172_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_014002938.1\|1671674_1671992_-	hypothetical protein	NA	NA	NA	NA
WP_014002937.1\|1671975_1673538_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-44	30.3

DBSCAN-SWA_10

2026626 : 2083144

Lysinibacillus_phage(30.0%)

protease,integrase,transposase

attL 2020761:2020777|attR 2064638:2064654

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2020761:2020777	attL	NA	NA	NA	NA
WP_014003141.1\|2026626_2027835_+\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	1.5e-16	28.8
WP_014003142.1\|2027827_2028085_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_014003143.1\|2028088_2028358_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_041636421.1\|2028460_2029342_+	hypothetical protein	NA	NA	NA	NA
WP_064306414.1\|2029438_2029666_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014003145.1\|2029773_2030616_+	toprim domain-containing protein	NA	NA	NA	NA
WP_014003146.1\|2030617_2031922_+	DNA primase family protein	F8J1F0	Lactobacillus_phage	2.9e-34	27.1
WP_041636424.1\|2031918_2032404_+	hypothetical protein	NA	NA	NA	NA
WP_014003148.1\|2032591_2032987_+	hypothetical protein	NA	NA	NA	NA
WP_148262215.1\|2033096_2033624_+	hypothetical protein	NA	NA	NA	NA
WP_014003149.1\|2033616_2034252_+	hypothetical protein	NA	NA	NA	NA
WP_014003150.1\|2034630_2038305_+	hypothetical protein	NA	NA	NA	NA
WP_014003151.1\|2038301_2038568_+	hypothetical protein	NA	NA	NA	NA
WP_014003152.1\|2038603_2039170_+	restriction endonuclease	NA	NA	NA	NA
WP_041636428.1\|2039405_2039630_+	hypothetical protein	NA	NA	NA	NA
WP_014003153.1\|2039622_2039961_+	hypothetical protein	NA	NA	NA	NA
WP_014003154.1\|2039962_2040280_+	hypothetical protein	NA	NA	NA	NA
WP_064306413.1\|2040493_2040916_-	hypothetical protein	NA	NA	NA	NA
WP_014003156.1\|2041322_2042657_+\|integrase	integrase family protein	A0A248SL35	Klebsiella_phage	1.6e-27	25.9
WP_014003159.1\|2044756_2045449_+	hypothetical protein	NA	NA	NA	NA
WP_014003160.1\|2045608_2045923_-	hypothetical protein	NA	NA	NA	NA
WP_148262216.1\|2045909_2046674_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_014003162.1\|2046606_2047296_-	hypothetical protein	NA	NA	NA	NA
WP_049784680.1\|2047351_2048164_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_041637572.1\|2048250_2049123_-	hypothetical protein	NA	NA	NA	NA
WP_012387019.1\|2049905_2051120_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014003165.1\|2051293_2053684_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_041636436.1\|2053837_2054374_-	hypothetical protein	NA	NA	NA	NA
WP_014003167.1\|2054405_2054876_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_049784681.1\|2054875_2055406_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_148262217.1\|2056070_2056541_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014003169.1\|2056540_2057275_-	hypothetical protein	NA	NA	NA	NA
WP_014003170.1\|2057684_2058116_-	hypothetical protein	NA	NA	NA	NA
WP_014003171.1\|2058112_2058832_-	hypothetical protein	NA	NA	NA	NA
WP_187288617.1\|2058884_2059718_-	ATP-binding protein	A0A059WFK9	Vibrio_phage	4.0e-37	36.3
WP_187288619.1\|2059726_2061355_-	hypothetical protein	H2BD69	Pseudomonas_phage	6.3e-18	45.7
WP_014003174.1\|2061629_2061911_-	hypothetical protein	NA	NA	NA	NA
WP_014003175.1\|2061910_2062924_-	ParM/StbA family protein	NA	NA	NA	NA
WP_014003176.1\|2063118_2065353_+	TraI domain-containing protein	NA	NA	NA	NA
2064638:2064654	attR	NA	NA	NA	NA
WP_070114032.1\|2065362_2067231_+	conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_014003178.1\|2067352_2067847_+	hypothetical protein	NA	NA	NA	NA
WP_014003179.1\|2067847_2068480_+	DUF4400 domain-containing protein	NA	NA	NA	NA
WP_082177366.1\|2068510_2069482_-	antA/AntB antirepressor family protein	Q7Y5W2	Haemophilus_phage	5.4e-25	57.4
WP_082177369.1\|2069478_2070597_-	Helicase associated domain protein	A0A076YNT4	Mesorhizobium_phage	8.7e-27	39.1
WP_041636438.1\|2070586_2071294_-	hypothetical protein	NA	NA	NA	NA
WP_041636441.1\|2071769_2073299_+	hypothetical protein	NA	NA	NA	NA
WP_041636443.1\|2073344_2073941_-	hypothetical protein	NA	NA	NA	NA
WP_014003184.1\|2074194_2075235_+	CpaF family protein	NA	NA	NA	NA
WP_014003185.1\|2075249_2076332_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_014003186.1\|2076331_2076664_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_014003187.1\|2076657_2079021_+	type IV secretory pathway VirB4 components-like protein	NA	NA	NA	NA
WP_012387019.1\|2079009_2080224_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014003188.1\|2080443_2081358_+	hypothetical protein	NA	NA	NA	NA
WP_041636445.1\|2081360_2081882_+	hypothetical protein	NA	NA	NA	NA
WP_012387019.1\|2081929_2083144_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8

DBSCAN-SWA_11

2105640 : 2144630

Lysinibacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012387019.1\|2105640_2106855_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014003211.1\|2107038_2107809_+	hypothetical protein	NA	NA	NA	NA
WP_014003212.1\|2107822_2108968_+	hypothetical protein	NA	NA	NA	NA
WP_041636470.1\|2108967_2110155_+	sulfotransferase family protein	NA	NA	NA	NA
WP_014003214.1\|2110154_2111087_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_014003215.1\|2111195_2111825_+	EAL domain-containing protein	NA	NA	NA	NA
WP_041636472.1\|2111821_2112037_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014003218.1\|2112046_2112367_-	hypothetical protein	NA	NA	NA	NA
WP_012387019.1\|2112438_2113653_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_041636474.1\|2113656_2113953_-	hypothetical protein	NA	NA	NA	NA
WP_148262221.1\|2113963_2114758_-	hypothetical protein	NA	NA	NA	NA
WP_148262222.1\|2114763_2114964_-	hypothetical protein	NA	NA	NA	NA
WP_041636480.1\|2114963_2115557_-	hypothetical protein	NA	NA	NA	NA
WP_014003221.1\|2115546_2115909_-	hypothetical protein	NA	NA	NA	NA
WP_014003222.1\|2115901_2116942_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_148262223.1\|2118333_2118597_-	hypothetical protein	NA	NA	NA	NA
WP_041636482.1\|2118644_2118866_+	hypothetical protein	NA	NA	NA	NA
WP_014003226.1\|2119050_2119317_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_041636484.1\|2119303_2119585_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
WP_014003228.1\|2119691_2120918_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	4.7e-42	30.4
WP_148262224.1\|2121609_2121774_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_082177438.1\|2121736_2122039_-	primase C-terminal domain-containing protein	NA	NA	NA	NA
WP_187288623.1\|2122227_2122365_+	hypothetical protein	NA	NA	NA	NA
WP_014003230.1\|2122414_2123371_+	hypothetical protein	NA	NA	NA	NA
WP_014003231.1\|2123398_2124211_+	SET domain-containing protein	NA	NA	NA	NA
WP_041636489.1\|2124507_2124966_+	isochorismatase family protein	NA	NA	NA	NA
WP_148262246.1\|2125607_2127098_+	Eco57I restriction-modification methylase domain-containing protein	A0A2L1IV91	Escherichia_phage	1.1e-50	33.5
WP_049784684.1\|2127108_2127735_+	hypothetical protein	NA	NA	NA	NA
WP_014003237.1\|2129103_2129655_+	BsuBIPstI restriction endonuclease domain-containing protein	NA	NA	NA	NA
WP_014003238.1\|2129776_2130100_-	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_049784685.1\|2130523_2131537_+	ATP-dependent helicase	NA	NA	NA	NA
WP_014002165.1\|2131442_2132228_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.7e-32	35.6
WP_014002164.1\|2132236_2133760_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	6.3e-28	29.9
WP_148262247.1\|2134216_2134978_+	ATP-binding domain-containing protein	E3T5J8	Cafeteria_roenbergensis_virus	4.7e-08	32.7
WP_014003240.1\|2135161_2135401_+	hypothetical protein	NA	NA	NA	NA
WP_014003241.1\|2135409_2136792_+	conjugal transfer protein Dtr system	NA	NA	NA	NA
WP_014003242.1\|2136793_2137537_+	hypothetical protein	NA	NA	NA	NA
WP_148262225.1\|2137791_2137983_+	hypothetical protein	NA	NA	NA	NA
WP_148262226.1\|2138058_2138466_-	hypothetical protein	A0A067XQV3	Caulobacter_phage	7.5e-29	46.4
WP_014003246.1\|2138776_2139322_-	lytic transglycosylase domain-containing protein	U5PVY0	Bacillus_phage	3.1e-14	37.6
WP_158007158.1\|2139387_2139561_-	hypothetical protein	NA	NA	NA	NA
WP_014003248.1\|2139656_2140547_-	GTP-binding protein	NA	NA	NA	NA
WP_041636497.1\|2140661_2141450_-	hypothetical protein	NA	NA	NA	NA
WP_014003251.1\|2141812_2142109_+	single-stranded DNA-binding protein	L7TJL2	Pseudomonas_virus	7.8e-28	61.9
WP_012387019.1\|2142164_2143379_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8
WP_014003049.1\|2143412_2144630_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	2.6e-08	24.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015854

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_015854_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015854_1

1-211

Orphan

Consensus_repeat	Method
TCCATCCCTGCACGCACAGGGCAGAC	CRT
CCTTCCATCCCTGCACGCACAGGGCAGACGC	PILER-CR
CTTCCATCCCTGCACGCACAGGGCAGAC	CRISPRCasFinder

3 spacers

csa3

The CRISPR arrays of NC_015854_1

>merge|NC_015854|1|1-211|CRT,PILER-CR,CRISPRCasFinder
TTGATCCCTGCGTACACAGGGCACACCGGATCATTCGCCAAAAGCCAGACATCGGCCTCCTTCCATCCCTGCACGCACAGGGCAGACGCCCTGCACGCCATCGACAAGGCGAAGGCGGAACTTCCATCCCTGCACGCACAGGGCAGACGTCAGCACCGGCCCCGGCGCTGGTACATCCAGCCTTCCATCCCTGCACGCACAGGGCAGACTC

>NC_015854|1|1|1-209|CRT
TTGATCCCTGCGTACACAGGGCACAC	CGGATCATTCGCCAAAAGCCAGACATCGGCCTCCT
TCCATCCCTGCACGCACAGGGCAGAC	GCCCTGCACGCCATCGACAAGGCGAAGGCGGAACT
TCCATCCCTGCACGCACAGGGCAGAC	GTCAGCACCGGCCCCGGCGCTGGTACATCCAGCCT
TCCATCCCTGCACGCACAGGGCAGAC

>NC_015854|1|1|59-211|PILER-CR
CCTTCCATCCCTGCACGCACAGGGCAGACGC	CCTGCACGCCATCGACAAGGCGAAGGCGGA
ACTTCCATCCCTGCACGCACAGGGCAGACGT	CAGCACCGGCCCCGGCGCTGGTACATCCAG
CCTTCCATCCCTGCACGCACAGGGCAGACTC

>NC_015854|1|1|60-209|CRISPRCasFinder
CTTCCATCCCTGCACGCACAGGGCAGAC	GCCCTGCACGCCATCGACAAGGCGAAGGCGGAA
CTTCCATCCCTGCACGCACAGGGCAGAC	GTCAGCACCGGCCCCGGCGCTGGTACATCCAGC
CTTCCATCCCTGCACGCACAGGGCAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015854.1\|WP_014003883.1\|4135_6094_-\|P-type-conjugative-transfer-protein-TrbL	unknown	unknown	gnl\|CDD\|131830
NC_015854.1\|WP_014003887.1\|11214_11592_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|378968
NC_015854.1\|WP_014003885.1\|8489_10292_-\|arsenical-pump-driving-ATPase	unknown	unknown	gnl\|CDD\|275109
NC_015854.1\|WP_041638325.1\|3786_4056_-\|hypothetical-protein	unknown	unknown	unknown
NC_015854.1\|WP_148262268.1\|426_2826_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|372640
NC_015854.1\|WP_041636199.1\|6103_6838_-\|conjugal-transfer-protein-TrbJ	unknown	unknown	gnl\|CDD\|131827
NC_015854.1\|WP_041638321.1\|2962_3658_-\|hypothetical-protein	unknown	unknown	unknown
NC_015854.1\|WP_014003884.1\|7044_8493_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181958
NC_015854.1\|WP_003799984.1\|10332_10698_-\|arsenite-efflux-transporter-metallochaperone-ArsD	unknown	unknown	gnl\|CDD\|377741
NC_015854.1\|WP_012387025.1\|10738_11218_-\|arsenate-reductase-ArsC	unknown	unknown	gnl\|CDD\|319973

Protein	Function_ID	Function_description	E-value
NC_015854.1\|WP_014003883.1\|4135_6094_-\|P-type-conjugative-transfer-protein-TrbL	gnl\|CDD\|131830	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL. The TrbL protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbL is a homolog of the F-type TraG protein (which is believed to be a mating pair stabilization pore-forming protein, pfam07916) as well as the vir system VirB6 protein. [Cellular processes, Conjugation].	2.69465e-32
NC_015854.1\|WP_014003887.1\|11214_11592_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	5.97554e-15
NC_015854.1\|WP_014003885.1\|8489_10292_-\|arsenical-pump-driving-ATPase	gnl\|CDD\|275109	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase. The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).	0
NC_015854.1\|WP_148262268.1\|426_2826_-\|N-6-DNA-methylase	gnl\|CDD\|372640	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	1.85216e-38
NC_015854.1\|WP_041636199.1\|6103_6838_-\|conjugal-transfer-protein-TrbJ	gnl\|CDD\|131827	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.	2.36665e-10
NC_015854.1\|WP_014003884.1\|7044_8493_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	1.76703e-120
NC_015854.1\|WP_003799984.1\|10332_10698_-\|arsenite-efflux-transporter-metallochaperone-ArsD	gnl\|CDD\|377741	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs.	2.45003e-70
NC_015854.1\|WP_012387025.1\|10738_11218_-\|arsenate-reductase-ArsC	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	1.1131e-65

>NC_015854.1|WP_148262268.1|426_2826_-|N-6-DNA-methylase
MCKEWRDVTNKPEEIVRQKFIRTLVEHYGYALEQMDQERRTQHGHKSPRADIVVWQTAMEKEAGRTPVLVVECKTDTIEIQERDYYQGESYTRATGCEFFIATNARHTAVFKLVPGLPGGFVAINEIPKATDWGSARRLKEIRESLRAFNRKEFQDLLFVCHSILRDVHKMDPGRAFDTISKILFIKMYVERSGQHGTFTTDYLDRRAAVRLPTDPAVHDGLFEQTKAYYKADDLFAASDKLDISEETFRRIVKQLERFDLSKTGDDIKGLAFEKFLGTTFRGELGQFFTPRPVVEFMVDLLNPREGERICDPASGSGGFLIRAFEHVRAQIVADIQRQKDEERARIEALGLPEEEEERQIEEAFSRLNRELLPSDDNNKPIDTRVGRLAWQCIYGTDAEPRAARTAKMNMIMHGDGHGGIHYHDGLLDINGIFGGRFDVVLTNPPFGSNVGRDQKVGGSDETRVPKDEAYLARCREGGYGPAWEESHQSLLAAAAARKPILDLFEIGKGKKNRPTELIFVERCLNLLKPGGRMGIVLPDGNLNNPSLAWLRRWAEGKAKLLAVVSLPEATFRSSNATVKASLVFLRKFTEAEAAQWEAAWAQAHAELDARFDQQRDEAHAAYAPRIVCGDDAEVQRLLDELAALGIQRTLLRWQHGEAPAYPRQARPTVQNKPAWTGEAAKEHKEHKKAAAELKKQADAALAAVRKRSDALFSELKAKYKAIDEAHTAALWARVRERFDYPVFVAAPKSVGITSTGETGEGVANDLPELLKAYREFAHWLAQGAQPEATPNFPGPSTA
>NC_015854.1|WP_041638321.1|2962_3658_-|hypothetical-protein
MDEIFRVTWLDGAHGLSRYEGKPCEATLADLAIQVGSLCLTRNTILDNGEWYARETVRLCMHPLAHWFAWNFYRLLYEPLPETQGRELALEWLMAHDMAYVGDGFLWPPVRIYSDGARMTLRLNRTQVPNLDPVQYTNTASVILPIRVVEDQILRFLKTCDTRLMDMGIKDSPFQVVYRELDFEPWLVTLDKGKKKKLRPMANRPLSRRRVEPEDHLLTAMLNNIVVQRSE
>NC_015854.1|WP_041638325.1|3786_4056_-|hypothetical-protein
MSFNTKLFLFWLAGVVIGPAVRAALPVAGLWIYAVWVGGPVIFWFLRWFIFAPASASELSGYSHWDIQKAREEGRQQGYNNGYNNGRNS
>NC_015854.1|WP_014003883.1|4135_6094_-|P-type-conjugative-transfer-protein-TrbL
MKKYGIWCLFLLLGLFVSPDVLAAPAPSINGSGAGVILNAFDSETLRWYQSLKADAEEIFYMLFGLDFVYLVSQWLIGGKDVHEVFTSFIKKMMSFAFFYTLLLNGHKLIGWVENGFQQSAIQATGASGGLLSWIFGTASKVFMACLVGPRIPDKSTGVLESIWQTITGGPTVLLSDILGMLVGLVVGIIALLAMIYLALEYIAIQMEVAMVASIGIILMGFAGSRWTVQHAEGYLKYALSVGVRFLVILLWIGFLQKSAGTVITQILSQVNSNHPTANLSGAVVAYGEVLIFVLLIAWMTKKLPSIASSIMSGASSLSGGSEGTALLAGAAIAGGAGLMGGAALAGRGGAGALTGAQAANMGGAAGELKGAGGGGTFPGGGGGIAGGLSGSGGGGVRDMEDFPGAENAVPAPDPGTLKTKRQDAGFVLPPSNWGASPSAGASPSASPKPAPGSSASSPLRGAAILRGAALAGRSPAPAGSNTMDSGPAGGTPAGATPAPGDVVATDTGAESGPAQVTQGAGGSDDLGTDAGASRVTESAKPASGGGTSASQETPTTSATPSAGQQAPTPQEALRAALQQSIQQAFAPMQESLNKLNDTLAEGAGRQEKPEGFMDKVGKYQKRHQLTESLLSPGQAEKTGVQAANHGLKHSE
>NC_015854.1|WP_041636199.1|6103_6838_-|conjugal-transfer-protein-TrbJ
MLVLPVCADAGGGLTGGATLPEQIVQEATLIQSKISGAERLVEQIQQYENMVQNMVTLPQTLMNQVLQPVDQLYGLVSQAQALTTNAINISQQFQNLNAGFNPQITAEYSSQYESISQGLNNALNTLIQTAGLNPNDFANQAQAQQAIANAMANPNSRNALLQGAVAVGQQTTASLTQLYNLTRAEAQTEADWRKAQLEHTTHQDELNQTGSQMLFGSNPLDERITTHGGTLNATSNALTASVN
>NC_015854.1|WP_014003884.1|7044_8493_-|FAD-dependent-oxidoreductase
MTRLLIIGGSDAGISAALRAHELDPQTEVSVLLADEYPNYSICGLPFYLSGETPDHRQLAHRTAFDGIEILTNHRAVSVHPAAKTVDVVRGANGSVKTLRYDHLVIATGAVPVRPQGLPGLDLPGVYLLHTMGDGFAVHSRLMGGETRSAIIIGAGYIGVEMADALRHRGIDVTLVSHTDPVFPSVDPSFGRLIGEELSRHGVRVVVGCTVERIEAADNRRGLTVSGSGGFTASADLVLVATGARPDTTLAAAAGIALGPSGAIRVTQRMETTLPGIWAAGDCAETWHRILQRPAYLPLGTTAHKQGRVAGENAVGGERLFAGSVGTQTVKVFELAIARTGLREAEARTADFDPVTIETETWDHKAYYPGAQKLRVRVTGDRRTGRLLGAQILGPWRSEVSKRIDVFATALFHGMGVEDLNDLDLSYTPPFGSPWDAVQMGAQAWTSVMKNEVASCSPPIDPQILGRCARFPLVTLSTRQSG
>NC_015854.1|WP_014003885.1|8489_10292_-|arsenical-pump-driving-ATPase
MLFLQNPPAFLFFTGKGGVGKTSLSCATAIHLAGQGKKILLVSTDPASNVGQVFSQEIGNKITTISTVAGLSALEIDPQQAAQQYRERIVGPVRGALPDDVVKGIEEQLSGACTTEIAAFDEFTALLTDATLIADYDHIIFDTAPTGHTIRLLQLPGAWSGFIEKNPEGASCLGPLAGLEKQRQRYAEAVKALSDPERTRLILVARAQKTTLDEVARTHEELAAIGLSRQNLVINGVLPESEAVHDALAAAIHRREQEAIANMPAVLRDLPLDQLPLKAFNLVGVEALSSLFSDRDEAAPVVAGAPAKPVDLPPLSTLVDEIAETGHGLIMMMGKGGVGKTTLAAAVAVALAERGLPVHLTTSDPAAHLTDTLAGSLDNLEVSRIDPQAETERYRQHVLVTKGKDLDAEGRAMLEEDLRSPCTEEIAVFQAFSRVIREAGKKFVVMDTAPTGHTLLLLDATGAYHREVARHAESNVRYTTPMMQLQDPARAKVMIVTLAETTPVLEAANLQEDLRRAGIEPWAWLINNSLSAAPTASPLLKRRAAFELTQIEAVRTRYTKRVALVPMQAEEPIGIEPLLALVEPRNGFGLGGAKHQKVAL
>NC_015854.1|WP_003799984.1|10332_10698_-|arsenite-efflux-transporter-metallochaperone-ArsD
MKKIEVFDPSLCCSTGVCGVEVDQALVTFAADVDWAKQNGAHIERYNLAQQPQMFAENATVKGFLQRSGQDALPLILVDGEVALAGRYPTRDELVRWAGLAAAPSMKTPSGGCCGGGSRTC
>NC_015854.1|WP_012387025.1|10738_11218_-|arsenate-reductase-ArsC
MNILFLCTGNSCRSILAEATFNHLAPTGWKAMSAGSQPTGTVHPRSLALLAREGIDTNGLHSKSWDNLPLAPDVVITVCSNAAGETCPAYLGSVLRAHWGVDDPAHATGTEAEIEAAFTTAYRILRRRIEAFHALPLAQLAHDRTRLKAELDRIGVLSA
>NC_015854.1|WP_014003887.1|11214_11592_-|helix-turn-helix-transcriptional-regulator
MEKQAATSIFESLSSGLRLDVFRLLVKKGPDGMVAGEIANALDIPPANLSFHLKALSQARLVTVEQEGRFQRYRADIPLMLDLIAYLTDECCTGSPAKCVEMVAASNCAKELLPALSPTPTKAIT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015854_1	1.1\|27\|35\|NC_015854\|CRT	27-61	35	NC_015854	Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence	27-61	0	1.0
NC_015854_1	1.1\|27\|35\|NC_015854\|CRT	27-61	35	NC_010600	Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence	59842-59876	0	1.0
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	NC_015854	Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence	88-122	0	1.0
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	NC_010600	Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence	59781-59815	0	1.0
NC_015854_1	1.3\|149\|35\|NC_015854\|CRT	149-183	35	NC_015854	Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence	149-183	0	1.0
NC_015854_1	1.3\|149\|35\|NC_015854\|CRT	149-183	35	NC_010600	Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence	59720-59754	0	1.0
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_015854	Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence	90-119	0	1.0
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_010600	Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence	59784-59813	0	1.0
NC_015854_1	1.5\|151\|30\|NC_015854\|PILER-CR	151-180	30	NC_015854	Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence	151-180	0	1.0
NC_015854_1	1.5\|151\|30\|NC_015854\|PILER-CR	151-180	30	NC_010600	Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence	59723-59752	0	1.0
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NC_015854	Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence	88-120	0	1.0
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NC_010600	Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence	59783-59815	0	1.0
NC_015854_1	1.7\|149\|33\|NC_015854\|CRISPRCasFinder	149-181	33	NC_015854	Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence	149-181	0	1.0
NC_015854_1	1.7\|149\|33\|NC_015854\|CRISPRCasFinder	149-181	33	NC_010600	Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence	59722-59754	0	1.0
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP041133	Serratia marcescens strain WVU-009 plasmid pWVU-009, complete sequence	63704-63733	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_LT575491	Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence	41562-41591	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_AP019010	Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence	40157-40186	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_015972	Serratia marcescens strain B-6493 plasmid pSM22, complete sequence	16933-16962	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	CP041234	Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence	7659-7688	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	MH834599	Microbacterium phage Bernstein, complete genome	17906-17935	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	MH834602	Microbacterium phage Brahms, complete genome	17853-17882	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	MN183281	Microbacterium phage Vitas, complete genome	17846-17875	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	MH834626	Microbacterium phage Rollins, complete genome	17906-17935	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	MH834604	Microbacterium phage Coltrane, complete genome	17853-17882	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	MH834596	Microbacterium phage Armstrong, complete genome	17851-17880	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_012849	Ralstonia pickettii 12D plasmid pRp12D02, complete sequence	107822-107851	5	0.833
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP033894	Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence	4357-4386	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP015740	Shinella sp. HZN7 plasmid pShin-04, complete sequence	139475-139504	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_KY000052	Agrobacterium tumefaciens strain CFBP7000 plasmid pTi_CFBP7000, complete sequence	109895-109924	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_KY000049	Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence	57772-57801	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_KY000055	Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence	138583-138612	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_KY000043	Agrobacterium rhizogenes strain CFBP1905 plasmid pTi_CFBP1905, complete sequence	65850-65879	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_KY000048	Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence	195231-195260	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_KY000053	Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence	57636-57665	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_KY000054	Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence	74647-74676	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	KY000034	Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence	54239-54268	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	KY000036	Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence	55504-55533	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP032929	Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence	34512-34541	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_010373	Methylobacterium sp. 4-46 plasmid pM44601, complete sequence	28243-28272	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_011990	Agrobacterium radiobacter K84 plasmid pAtK84b, complete sequence	170097-170126	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP030831	Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence	90672-90701	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_003065	Agrobacterium fabrum str. C58 plasmid Ti, complete sequence	87104-87133	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_MK439382	Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence	86593-86622	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_MK439383	Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence	86593-86622	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_MK318973	Agrobacterium rhizogenes strain Colt5.8 plasmid pOC-Colt5.8, complete sequence	39132-39161	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_MK318986	Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence	34918-34947	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_MK439385	Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence	90358-90387	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_MK439384	Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence	88515-88544	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_MK439381	Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence	86593-86622	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_MF511177	Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence	34918-34947	6	0.8
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_KY000051	Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence	105468-105497	6	0.8
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NC_012849	Ralstonia pickettii 12D plasmid pRp12D02, complete sequence	107821-107853	6	0.818
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	298738-298767	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP015740	Shinella sp. HZN7 plasmid pShin-04, complete sequence	137391-137420	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	713310-713339	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	MT711888	Pseudomonas phage Dolphis, complete genome	80022-80051	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1219080-1219109	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	213661-213690	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	1379190-1379219	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	723-752	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP026519	Deinococcus sp. NW-56 plasmid unnamed3, complete sequence	66328-66357	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	191592-191621	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP051182	Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence	37025-37054	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	LT960609	Escherichia phage SECphi18 genome assembly, complete genome: monopartite	2471-2500	7	0.767
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_024783	Enterobacteria phage EK99P-1, complete genome	38726-38755	7	0.767
NC_015854_1	1.5\|151\|30\|NC_015854\|PILER-CR	151-180	30	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	149409-149438	7	0.767
NC_015854_1	1.5\|151\|30\|NC_015854\|PILER-CR	151-180	30	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	815274-815303	7	0.767
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	MH834599	Microbacterium phage Bernstein, complete genome	17904-17936	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	MH834602	Microbacterium phage Brahms, complete genome	17851-17883	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	MN183281	Microbacterium phage Vitas, complete genome	17844-17876	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	MH834626	Microbacterium phage Rollins, complete genome	17904-17936	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	MH834604	Microbacterium phage Coltrane, complete genome	17851-17883	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	MH834596	Microbacterium phage Armstrong, complete genome	17849-17881	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_KY000049	Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence	57770-57802	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_KY000055	Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence	138581-138613	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_KY000043	Agrobacterium rhizogenes strain CFBP1905 plasmid pTi_CFBP1905, complete sequence	65848-65880	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_KY000048	Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence	195229-195261	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_KY000053	Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence	57634-57666	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_KY000054	Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence	74645-74677	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	KY000034	Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence	54238-54270	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	KY000036	Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence	55503-55535	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP032929	Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence	34511-34543	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NC_011990	Agrobacterium radiobacter K84 plasmid pAtK84b, complete sequence	170096-170128	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP030831	Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence	90671-90703	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NC_003065	Agrobacterium fabrum str. C58 plasmid Ti, complete sequence	87103-87135	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_MK439382	Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence	86592-86624	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_MK439383	Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence	86592-86624	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_MK318973	Agrobacterium rhizogenes strain Colt5.8 plasmid pOC-Colt5.8, complete sequence	39131-39163	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_MK318986	Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence	34917-34949	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_MK439385	Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence	90357-90389	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_MK439384	Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence	88514-88546	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_MK439381	Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence	86592-86624	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_MF511177	Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence	34917-34949	7	0.788
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_KY000051	Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence	105467-105499	7	0.788
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	MH834599	Microbacterium phage Bernstein, complete genome	17904-17938	8	0.771
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	MH834602	Microbacterium phage Brahms, complete genome	17851-17885	8	0.771
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	MN183281	Microbacterium phage Vitas, complete genome	17844-17878	8	0.771
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	MH834626	Microbacterium phage Rollins, complete genome	17904-17938	8	0.771
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	MH834604	Microbacterium phage Coltrane, complete genome	17851-17885	8	0.771
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	MH834596	Microbacterium phage Armstrong, complete genome	17849-17883	8	0.771
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_LN831789	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE2	81661-81690	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	219086-219115	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP025552	Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence	230607-230636	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP022431	Pantoea ananatis strain YJ76 plasmid p_unamed2	85446-85475	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP042333	Bosea sp. F3-2 plasmid pB32-2, complete sequence	182111-182140	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	913692-913721	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	914691-914720	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_008308	Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete sequence	67859-67888	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	242538-242567	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	209849-209878	8	0.733
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP031696	Erwinia billingiae strain TH88 plasmid unnamed1, complete sequence	43420-43449	8	0.733
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP041133	Serratia marcescens strain WVU-009 plasmid pWVU-009, complete sequence	63702-63734	8	0.758
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_LT575491	Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence	41560-41592	8	0.758
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_AP019010	Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence	40156-40188	8	0.758
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NC_015972	Serratia marcescens strain B-6493 plasmid pSM22, complete sequence	16932-16964	8	0.758
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	CP041234	Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence	7658-7690	8	0.758
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	MT711888	Pseudomonas phage Dolphis, complete genome	80020-80052	8	0.758
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1227747-1227776	9	0.7
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP017079	Novosphingobium resinovorum strain SA1 plasmid pSA4, complete sequence	10460-10489	9	0.7
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_AP018669	Sphingobium amiense strain DSM 16289 plasmid pSAMIE_6, complete sequence	3187-3216	9	0.7
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	MT114163	Mycobacterium phage Settecandela, complete genome	47833-47862	9	0.7
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	MK937592	Mycobacterium phage Phrappuccino, complete genome	47833-47862	9	0.7
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_AP017660	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_6	12103-12132	9	0.7
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP013073	Sphingobium indicum B90A plasmid pSRL3, complete sequence	38449-38478	9	0.7
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP012703	Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 3, complete sequence	29765-29794	9	0.7
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NZ_CP005090	Sphingobium sp. TKS plasmid pTK6, complete sequence	33250-33279	9	0.7
NC_015854_1	1.4\|90\|30\|NC_015854\|PILER-CR	90-119	30	NC_020544	Sphingomonas sp. MM-1 plasmid pISP3, complete sequence	36166-36195	9	0.7
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP033894	Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence	4356-4388	9	0.727
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP050118	Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence	83308-83340	9	0.727
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	KM659097	Paracoccus yeei plasmid pLM20P5, complete sequence	18791-18823	9	0.727
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP050122	Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence	27810-27842	9	0.727
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP022431	Pantoea ananatis strain YJ76 plasmid p_unamed2	85444-85476	9	0.727
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP031502	Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence	38364-38396	9	0.727
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NC_000958	Deinococcus radiodurans R1 plasmid MP1, complete sequence	118630-118662	9	0.727
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	NZ_CP041133	Serratia marcescens strain WVU-009 plasmid pWVU-009, complete sequence	63702-63736	10	0.714
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	NZ_LT575491	Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence	41560-41594	10	0.714
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	NZ_AP019010	Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence	40154-40188	10	0.714
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	NC_015972	Serratia marcescens strain B-6493 plasmid pSM22, complete sequence	16930-16964	10	0.714
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	CP041234	Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence	7656-7690	10	0.714
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP015740	Shinella sp. HZN7 plasmid pShin-04, complete sequence	137389-137421	10	0.697
NC_015854_1	1.6\|88\|33\|NC_015854\|CRISPRCasFinder	88-120	33	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1219079-1219111	10	0.697
NC_015854_1	1.7\|149\|33\|NC_015854\|CRISPRCasFinder	149-181	33	NC_010509	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD02, complete sequence	9468-9500	10	0.697
NC_015854_1	1.2\|88\|35\|NC_015854\|CRT	88-122	35	NZ_CP033894	Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence	4354-4388	11	0.686

1. spacer 1.1|27|35|NC_015854|CRT matches to NC_015854 (Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence) position: , mismatch: 0, identity: 1.0

cggatcattcgccaaaagccagacatcggcctcct	CRISPR spacer
cggatcattcgccaaaagccagacatcggcctcct	Protospacer
***********************************

2. spacer 1.1|27|35|NC_015854|CRT matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 0, identity: 1.0

cggatcattcgccaaaagccagacatcggcctcct	CRISPR spacer
cggatcattcgccaaaagccagacatcggcctcct	Protospacer
***********************************

3. spacer 1.2|88|35|NC_015854|CRT matches to NC_015854 (Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence) position: , mismatch: 0, identity: 1.0

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
gccctgcacgccatcgacaaggcgaaggcggaact	Protospacer
***********************************

4. spacer 1.2|88|35|NC_015854|CRT matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 0, identity: 1.0

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
gccctgcacgccatcgacaaggcgaaggcggaact	Protospacer
***********************************

5. spacer 1.3|149|35|NC_015854|CRT matches to NC_015854 (Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence) position: , mismatch: 0, identity: 1.0

gtcagcaccggccccggcgctggtacatccagcct	CRISPR spacer
gtcagcaccggccccggcgctggtacatccagcct	Protospacer
***********************************

6. spacer 1.3|149|35|NC_015854|CRT matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcagcaccggccccggcgctggtacatccagcct	CRISPR spacer
gtcagcaccggccccggcgctggtacatccagcct	Protospacer
***********************************

7. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_015854 (Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence) position: , mismatch: 0, identity: 1.0

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cctgcacgccatcgacaaggcgaaggcgga	Protospacer
******************************

8. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 0, identity: 1.0

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cctgcacgccatcgacaaggcgaaggcgga	Protospacer
******************************

9. spacer 1.5|151|30|NC_015854|PILER-CR matches to NC_015854 (Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence) position: , mismatch: 0, identity: 1.0

cagcaccggccccggcgctggtacatccag	CRISPR spacer
cagcaccggccccggcgctggtacatccag	Protospacer
******************************

10. spacer 1.5|151|30|NC_015854|PILER-CR matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 0, identity: 1.0

cagcaccggccccggcgctggtacatccag	CRISPR spacer
cagcaccggccccggcgctggtacatccag	Protospacer
******************************

11. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NC_015854 (Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence) position: , mismatch: 0, identity: 1.0

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gccctgcacgccatcgacaaggcgaaggcggaa	Protospacer
*********************************

12. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 0, identity: 1.0

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gccctgcacgccatcgacaaggcgaaggcggaa	Protospacer
*********************************

13. spacer 1.7|149|33|NC_015854|CRISPRCasFinder matches to NC_015854 (Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence) position: , mismatch: 0, identity: 1.0

gtcagcaccggccccggcgctggtacatccagc	CRISPR spacer
gtcagcaccggccccggcgctggtacatccagc	Protospacer
*********************************

14. spacer 1.7|149|33|NC_015854|CRISPRCasFinder matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcagcaccggccccggcgctggtacatccagc	CRISPR spacer
gtcagcaccggccccggcgctggtacatccagc	Protospacer
*********************************

15. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP041133 (Serratia marcescens strain WVU-009 plasmid pWVU-009, complete sequence) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gctgaacgccatcggcaaggcgaaggcgcg	Protospacer
 *** *********.************* .

16. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_LT575491 (Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gctgaacgccatcggcaaggcgaaggcgcg	Protospacer
 *** *********.************* .

17. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_AP019010 (Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gctgaacgccatcggcaaggcgaaggcgcg	Protospacer
 *** *********.************* .

18. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_015972 (Serratia marcescens strain B-6493 plasmid pSM22, complete sequence) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gctgaacgccatcggcaaggcgaaggcgcg	Protospacer
 *** *********.************* .

19. spacer 1.4|90|30|NC_015854|PILER-CR matches to CP041234 (Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gctgaacgccatcggcaaggcgaaggcgcg	Protospacer
 *** *********.************* .

20. spacer 1.4|90|30|NC_015854|PILER-CR matches to MH834599 (Microbacterium phage Bernstein, complete genome) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccaccacgtcatcgccaaggcgaaggcggg	Protospacer
**  ****.***** **************.

21. spacer 1.4|90|30|NC_015854|PILER-CR matches to MH834602 (Microbacterium phage Brahms, complete genome) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccaccacgtcatcgccaaggcgaaggcggg	Protospacer
**  ****.***** **************.

22. spacer 1.4|90|30|NC_015854|PILER-CR matches to MN183281 (Microbacterium phage Vitas, complete genome) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccaccacgtcatcgccaaggcgaaggcggg	Protospacer
**  ****.***** **************.

23. spacer 1.4|90|30|NC_015854|PILER-CR matches to MH834626 (Microbacterium phage Rollins, complete genome) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccaccacgtcatcgccaaggcgaaggcggg	Protospacer
**  ****.***** **************.

24. spacer 1.4|90|30|NC_015854|PILER-CR matches to MH834604 (Microbacterium phage Coltrane, complete genome) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccaccacgtcatcgccaaggcgaaggcggg	Protospacer
**  ****.***** **************.

25. spacer 1.4|90|30|NC_015854|PILER-CR matches to MH834596 (Microbacterium phage Armstrong, complete genome) position: , mismatch: 5, identity: 0.833

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccaccacgtcatcgccaaggcgaaggcggg	Protospacer
**  ****.***** **************.

26. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_012849 (Ralstonia pickettii 12D plasmid pRp12D02, complete sequence) position: , mismatch: 5, identity: 0.833

---cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
aaccctg---gccattgacaaggtgaaggcgga	Protospacer
   ****   *****.*******.*********

27. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP033894 (Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gctgaacgccatcggcaaggcgaaggtgcg	Protospacer
 *** *********.***********.* .

28. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP015740 (Shinella sp. HZN7 plasmid pShin-04, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cgtcgaggccttcgacaaggcgacggcgga	Protospacer
* *  * *** ************ ******

29. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_KY000052 (Agrobacterium tumefaciens strain CFBP7000 plasmid pTi_CFBP7000, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

30. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_KY000049 (Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

31. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_KY000055 (Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

32. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_KY000043 (Agrobacterium rhizogenes strain CFBP1905 plasmid pTi_CFBP1905, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

33. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_KY000048 (Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

34. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_KY000053 (Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

35. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_KY000054 (Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

36. spacer 1.4|90|30|NC_015854|PILER-CR matches to KY000034 (Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

37. spacer 1.4|90|30|NC_015854|PILER-CR matches to KY000036 (Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

38. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP032929 (Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

39. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_010373 (Methylobacterium sp. 4-46 plasmid pM44601, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gcttgagggcatcgccaaggcgaaggcgga	Protospacer
 **  * * ***** ***************

40. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_011990 (Agrobacterium radiobacter K84 plasmid pAtK84b, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

41. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP030831 (Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

42. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_003065 (Agrobacterium fabrum str. C58 plasmid Ti, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

43. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_MK439382 (Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

44. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_MK439383 (Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

45. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_MK318973 (Agrobacterium rhizogenes strain Colt5.8 plasmid pOC-Colt5.8, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

46. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_MK318986 (Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

47. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_MK439385 (Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

48. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_MK439384 (Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

49. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_MK439381 (Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

50. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_MF511177 (Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

51. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_KY000051 (Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence) position: , mismatch: 6, identity: 0.8

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttctatgccttcgacaaggccaaggcgga	Protospacer
*.* .*.*** ********** ********

52. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NC_012849 (Ralstonia pickettii 12D plasmid pRp12D02, complete sequence) position: , mismatch: 6, identity: 0.818

---gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ccaaccctg---gccattgacaaggtgaaggcggaa	Protospacer
   .*****   *****.*******.**********

53. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
atcgccggccatcgacaaggcgaaggcgcg	Protospacer
 ..**  ********************* .

54. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP015740 (Shinella sp. HZN7 plasmid pShin-04, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
caacgccgacatcgccaaggcgaaggcgga	Protospacer
*     ** ***** ***************

55. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
tgtcgaggcaatcgacaaggcgaaggcggc	Protospacer
. *  * ** *******************

56. spacer 1.4|90|30|NC_015854|PILER-CR matches to MT711888 (Pseudomonas phage Dolphis, complete genome) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gcgagccgccatcgccaaggcgaaggccga	Protospacer
 * .  ******** ************ **

57. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
caatgccgacatcgccaaggcgaaggcgga	Protospacer
*     ** ***** ***************

58. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
accgatcgccatagacaaggcgaaagcggt	Protospacer
 *.*  ****** ***********.****

59. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gctcaatctcaacgacaaggcgaaggcgga	Protospacer
 **  *. .** ******************

60. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 7, identity: 0.767

cctgca-cgccatcgacaaggcgaaggcgga	CRISPR spacer
-tagcgccgccatcgacgaggcggaggcggt	Protospacer
 . **. **********.*****.******

61. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP026519 (Deinococcus sp. NW-56 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ggcgcgggccatcgccagggcgaaggcgga	Protospacer
  .**. ******* **.************

62. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gctgcacgccagcgacaaggcggtagcgct	Protospacer
 ********** **********. .***

63. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP051182 (Thalassobius gelatinovorus strain NEB572 plasmid pAge77, complete sequence) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cttgatcgccatcgacatggcgaaggccag	Protospacer
*.**  *********** ********* ..

64. spacer 1.4|90|30|NC_015854|PILER-CR matches to LT960609 (Escherichia phage SECphi18 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
accgttcgccatcgaacaggcgaaggcggc	Protospacer
 *.*. *********  ************

65. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_024783 (Enterobacteria phage EK99P-1, complete genome) position: , mismatch: 7, identity: 0.767

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
accgttcgccatcgaacaggcgaaggcggc	Protospacer
 *.*. *********  ************

66. spacer 1.5|151|30|NC_015854|PILER-CR matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 7, identity: 0.767

cagcaccggccccggcgctggtacatccag	CRISPR spacer
agggaccgggcccggcgctggcacatcgcg	Protospacer
 .* ***** ***********.*****  *

67. spacer 1.5|151|30|NC_015854|PILER-CR matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cagcaccggccccggcgctggtacatccag	CRISPR spacer
gcgctgctgcccctgcgctggtacatccaa	Protospacer
  **  * ***** ***************.

68. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to MH834599 (Microbacterium phage Bernstein, complete genome) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggc	Protospacer
* **  ****.***** **************.

69. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to MH834602 (Microbacterium phage Brahms, complete genome) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggc	Protospacer
* **  ****.***** **************.

70. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to MN183281 (Microbacterium phage Vitas, complete genome) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggc	Protospacer
* **  ****.***** **************.

71. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to MH834626 (Microbacterium phage Rollins, complete genome) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggc	Protospacer
* **  ****.***** **************.

72. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to MH834604 (Microbacterium phage Coltrane, complete genome) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggc	Protospacer
* **  ****.***** **************.

73. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to MH834596 (Microbacterium phage Armstrong, complete genome) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggc	Protospacer
* **  ****.***** **************.

74. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_KY000049 (Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

75. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_KY000055 (Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

76. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_KY000043 (Agrobacterium rhizogenes strain CFBP1905 plasmid pTi_CFBP1905, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

77. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_KY000048 (Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

78. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_KY000053 (Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

79. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_KY000054 (Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

80. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to KY000034 (Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

81. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to KY000036 (Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

82. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP032929 (Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

83. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NC_011990 (Agrobacterium radiobacter K84 plasmid pAtK84b, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

84. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP030831 (Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

85. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NC_003065 (Agrobacterium fabrum str. C58 plasmid Ti, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

86. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_MK439382 (Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

87. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_MK439383 (Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

88. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_MK318973 (Agrobacterium rhizogenes strain Colt5.8 plasmid pOC-Colt5.8, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

89. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_MK318986 (Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

90. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_MK439385 (Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

91. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_MK439384 (Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

92. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_MK439381 (Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

93. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_MF511177 (Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

94. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_KY000051 (Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
ggcttctatgccttcgacaaggccaaggcggaa	Protospacer
* *.* .*.*** ********** *********

95. spacer 1.2|88|35|NC_015854|CRT matches to MH834599 (Microbacterium phage Bernstein, complete genome) position: , mismatch: 8, identity: 0.771

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggcat	Protospacer
* **  ****.***** **************.  *

96. spacer 1.2|88|35|NC_015854|CRT matches to MH834602 (Microbacterium phage Brahms, complete genome) position: , mismatch: 8, identity: 0.771

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggcat	Protospacer
* **  ****.***** **************.  *

97. spacer 1.2|88|35|NC_015854|CRT matches to MN183281 (Microbacterium phage Vitas, complete genome) position: , mismatch: 8, identity: 0.771

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggcat	Protospacer
* **  ****.***** **************.  *

98. spacer 1.2|88|35|NC_015854|CRT matches to MH834626 (Microbacterium phage Rollins, complete genome) position: , mismatch: 8, identity: 0.771

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggcat	Protospacer
* **  ****.***** **************.  *

99. spacer 1.2|88|35|NC_015854|CRT matches to MH834604 (Microbacterium phage Coltrane, complete genome) position: , mismatch: 8, identity: 0.771

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggcat	Protospacer
* **  ****.***** **************.  *

100. spacer 1.2|88|35|NC_015854|CRT matches to MH834596 (Microbacterium phage Armstrong, complete genome) position: , mismatch: 8, identity: 0.771

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
gaccaccacgtcatcgccaaggcgaaggcgggcat	Protospacer
* **  ****.***** **************.  *

101. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_LN831789 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE2) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cgactccgccatcgacaaggtgaaggcgac	Protospacer
*   . **************.*******.

102. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cggcaacgtcatcgacaaggcgaagtcgtt	Protospacer
*    ***.**************** **

103. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP025552 (Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gcacagcgccatcgacagggtgaaggcggc	Protospacer
 *   .***********.**.********

104. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP022431 (Pantoea ananatis strain YJ76 plasmid p_unamed2) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ggagatggccatcggcaaggcgaaggcgaa	Protospacer
   *   *******.*************.*

105. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP042333 (Bosea sp. F3-2 plasmid pB32-2, complete sequence) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
tcgcttcgccatcgacgaggcgaacgcggc	Protospacer
.*  . **********.******* ****

106. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
catccatgccatcgacaaggcgaagatccg	Protospacer
* * **.******************..  .

107. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
catccatgccatcgacaaggcgaagatccg	Protospacer
* * **.******************..  .

108. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_008308 (Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
tatctgggccaatgacaaggcgaaggcgga	Protospacer
. * .. **** .*****************

109. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ctcgcccgccatcgccaaggcgaaggaccg	Protospacer
*..** ******** ***********   .

110. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
cggcaacgtcatcgacaaggcgaagtcgtt	Protospacer
*    ***.**************** **

111. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP031696 (Erwinia billingiae strain TH88 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ggagatggccatcggcaaggcgaaggcgaa	Protospacer
   *   *******.*************.*

112. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP041133 (Serratia marcescens strain WVU-009 plasmid pWVU-009, complete sequence) position: , mismatch: 8, identity: 0.758

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgc	Protospacer
   *** *********.************* .

113. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_LT575491 (Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence) position: , mismatch: 8, identity: 0.758

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgc	Protospacer
   *** *********.************* .

114. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_AP019010 (Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence) position: , mismatch: 8, identity: 0.758

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgc	Protospacer
   *** *********.************* .

115. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NC_015972 (Serratia marcescens strain B-6493 plasmid pSM22, complete sequence) position: , mismatch: 8, identity: 0.758

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgc	Protospacer
   *** *********.************* .

116. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to CP041234 (Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence) position: , mismatch: 8, identity: 0.758

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgc	Protospacer
   *** *********.************* .

117. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to MT711888 (Pseudomonas phage Dolphis, complete genome) position: , mismatch: 8, identity: 0.758

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gcgcgagccgccatcgccaaggcgaaggccgag	Protospacer
** * .  ******** ************ **.

118. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ggaatacgacgtcgacaaggcgaaggcgct	Protospacer
   ..*** *.*****************

119. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP017079 (Novosphingobium resinovorum strain SA1 plasmid pSA4, complete sequence) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccagcacgccatcgacaaggcattccgcgc	Protospacer
** ******************.      *

120. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_AP018669 (Sphingobium amiense strain DSM 16289 plasmid pSAMIE_6, complete sequence) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccagcacgccatcgacaaggcattccgcgc	Protospacer
** ******************.      *

121. spacer 1.4|90|30|NC_015854|PILER-CR matches to MT114163 (Mycobacterium phage Settecandela, complete genome) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gtcgttcgccatcgacaaggccaaggccag	Protospacer
 ..*. *************** ***** ..

122. spacer 1.4|90|30|NC_015854|PILER-CR matches to MK937592 (Mycobacterium phage Phrappuccino, complete genome) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
gtcgttcgccatcgacaaggccaaggccag	Protospacer
 ..*. *************** ***** ..

123. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_AP017660 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_6) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccagcacgccatcgacaaggcattccgcgc	Protospacer
** ******************.      *

124. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP013073 (Sphingobium indicum B90A plasmid pSRL3, complete sequence) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccagcacgccatcgacaaggcattccgcgc	Protospacer
** ******************.      *

125. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP012703 (Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccagcacgccatcgacaaggcattccgcgc	Protospacer
** ******************.      *

126. spacer 1.4|90|30|NC_015854|PILER-CR matches to NZ_CP005090 (Sphingobium sp. TKS plasmid pTK6, complete sequence) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccagcacgccatcgacaaggcattccgcgc	Protospacer
** ******************.      *

127. spacer 1.4|90|30|NC_015854|PILER-CR matches to NC_020544 (Sphingomonas sp. MM-1 plasmid pISP3, complete sequence) position: , mismatch: 9, identity: 0.7

cctgcacgccatcgacaaggcgaaggcgga	CRISPR spacer
ccagcacgccatcgacaaggcattccgcgc	Protospacer
** ******************.      *

128. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP033894 (Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggtgcgc	Protospacer
   *** *********.***********.* .

129. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP050118 (Deinococcus radiodurans strain BNK-50 plasmid pMP1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gccctgcacgacatcggcaaggcgctgaccacc	Protospacer
********** *****.*******  *.* .

130. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to KM659097 (Paracoccus yeei plasmid pLM20P5, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gccctgcgcgccctcgacaaggcgggcgaagcg	Protospacer
*******.**** ***********.. * .* .

131. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP050122 (Deinococcus radiodurans strain BND-54 plasmid pMP1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gccctgcacgacatcggcaaggcgctgaccacc	Protospacer
********** *****.*******  *.* .

132. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP022431 (Pantoea ananatis strain YJ76 plasmid p_unamed2) position: , mismatch: 9, identity: 0.727

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gaggagatggccatcggcaaggcgaaggcgaaa	Protospacer
*    *   *******.*************.**

133. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP031502 (Deinococcus radiodurans strain R1 dM1 plasmid pMP1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gccctgcacgacatcggcaaggcgctgaccacc	Protospacer
********** *****.*******  *.* .

134. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NC_000958 (Deinococcus radiodurans R1 plasmid MP1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
gccctgcacgacatcggcaaggcgctgaccacc	Protospacer
********** *****.*******  *.* .

135. spacer 1.2|88|35|NC_015854|CRT matches to NZ_CP041133 (Serratia marcescens strain WVU-009 plasmid pWVU-009, complete sequence) position: , mismatch: 10, identity: 0.714

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgcac	Protospacer
   *** *********.************* .  .

136. spacer 1.2|88|35|NC_015854|CRT matches to NZ_LT575491 (Serratia marcescens isolate PWN146_assembly plasmid PWN146p1, complete sequence) position: , mismatch: 10, identity: 0.714

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgcac	Protospacer
   *** *********.************* .  .

137. spacer 1.2|88|35|NC_015854|CRT matches to NZ_AP019010 (Serratia marcescens strain AS-1 plasmid pSERAS01, complete sequence) position: , mismatch: 10, identity: 0.714

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgcac	Protospacer
   *** *********.************* .  .

138. spacer 1.2|88|35|NC_015854|CRT matches to NC_015972 (Serratia marcescens strain B-6493 plasmid pSM22, complete sequence) position: , mismatch: 10, identity: 0.714

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgcac	Protospacer
   *** *********.************* .  .

139. spacer 1.2|88|35|NC_015854|CRT matches to CP041234 (Serratia marcescens subsp. marcescens ATCC 13880 plasmid pATCC, complete sequence) position: , mismatch: 10, identity: 0.714

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggcgcgcac	Protospacer
   *** *********.************* .  .

140. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP015740 (Shinella sp. HZN7 plasmid pShin-04, complete sequence) position: , mismatch: 10, identity: 0.697

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
atcaacgccgacatcgccaaggcgaaggcggag	Protospacer
..*     ** ***** ***************.

141. spacer 1.6|88|33|NC_015854|CRISPRCasFinder matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 10, identity: 0.697

gccctgcacgccatcgacaaggcgaaggcggaa	CRISPR spacer
atcaatgccgacatcgccaaggcgaaggcggat	Protospacer
..*     ** ***** ***************

142. spacer 1.7|149|33|NC_015854|CRISPRCasFinder matches to NC_010509 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD02, complete sequence) position: , mismatch: 10, identity: 0.697

gtcagcaccggccccggcgctggtacatccagc	CRISPR spacer
gtcaccaccgcccccggcgctggtgtcgctgcg	Protospacer
**** ***** *************..  *..

143. spacer 1.2|88|35|NC_015854|CRT matches to NZ_CP033894 (Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence) position: , mismatch: 11, identity: 0.686

gccctgcacgccatcgacaaggcgaaggcggaact	CRISPR spacer
tggctgaacgccatcggcaaggcgaaggtgcgcac	Protospacer
   *** *********.***********.* .  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_015851

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11681 : 59425

Acinetobacter_phage(21.43%)

transposase,integrase,protease

attL 9616:9675|attR 39817:40356

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
9616:9675	attL	NA	NA	NA	NA
WP_082177477.1\|11681_13217_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.8e-134	48.8
WP_041638071.1\|15919_18253_+	TonB-dependent receptor	NA	NA	NA	NA
WP_014003648.1\|18312_19296_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014003649.1\|19742_21989_+	xanthine dehydrogenase family protein	A0A0P0I429	Acinetobacter_phage	2.2e-69	29.0
WP_041638072.1\|21988_22444_+	(2Fe-2S)-binding protein	A0A0P0IVM8	Acinetobacter_phage	7.6e-14	31.9
WP_014003651.1\|22440_23292_+	xanthine dehydrogenase family protein subunit M	A0A0P0IVM8	Acinetobacter_phage	3.9e-19	28.2
WP_082177480.1\|23310_23889_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_014003653.1\|23898_24981_+	ring-opening amidohydrolase	NA	NA	NA	NA
WP_014003654.1\|24980_25940_+	XdhC family protein	NA	NA	NA	NA
WP_041638073.1\|25914_26112_+	DUF4089 domain-containing protein	NA	NA	NA	NA
WP_041638170.1\|26133_27507_+	AtzE family amidohydrolase	NA	NA	NA	NA
WP_014003657.1\|27518_27905_+	oxalurate catabolism protein HpxZ	NA	NA	NA	NA
WP_081254407.1\|27908_28520_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_041638074.1\|28516_30133_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_014003659.1\|30124_31045_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_148262262.1\|31215_32235_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	3.0e-18	28.0
WP_187288691.1\|32591_32714_+\|transposase	transposase	NA	NA	NA	NA
WP_014003661.1\|32859_33324_-\|protease	SOS-response repressor and protease LexA	A0A218MND2	uncultured_virus	3.7e-16	39.5
WP_148262249.1\|33347_33653_-	hypothetical protein	NA	NA	NA	NA
WP_148262250.1\|33621_33912_-	hypothetical protein	NA	NA	NA	NA
WP_014003663.1\|34179_35112_+\|integrase	tyrosine-type recombinase/integrase	A7XX23	Thermus_virus	7.7e-13	28.9
WP_014003664.1\|35704_35980_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	2.7e-14	46.7
WP_014003665.1\|35991_36354_+	hypothetical protein	NA	NA	NA	NA
WP_014003666.1\|36444_36756_+	integration host factor subunit alpha	G8GWC6	Rhodobacter_phage	2.0e-05	33.3
WP_014003667.1\|36984_37275_+	hypothetical protein	NA	NA	NA	NA
WP_014003668.1\|37271_37556_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_103415156.1\|37832_38429_-	uracil-DNA glycosylase	A0A218MKQ4	uncultured_virus	1.0e-10	40.6
WP_014003670.1\|38425_38659_-	hypothetical protein	NA	NA	NA	NA
WP_014003673.1\|39446_39779_-	hypothetical protein	NA	NA	NA	NA
WP_014003674.1\|39830_40877_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	1.4e-39	33.2
39817:40356	attR	NA	NA	NA	NA
WP_014003675.1\|40927_42262_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_148262263.1\|42692_43280_+	hypothetical protein	NA	NA	NA	NA
WP_014003677.1\|43473_45513_+	ATP-dependent helicase	S5MMD7	Bacillus_phage	1.5e-29	23.8
WP_014003678.1\|45679_46282_+	hypothetical protein	NA	NA	NA	NA
WP_041638076.1\|46412_47555_+	hypothetical protein	NA	NA	NA	NA
WP_103415180.1\|47566_49786_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_014003681.1\|49846_50158_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_103415159.1\|50201_50618_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014003683.1\|50796_51630_+	hypothetical protein	A0A2I6PCS6	Staphylococcus_phage	6.3e-06	35.9
WP_014003684.1\|51821_52103_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_014003686.1\|52475_53339_+	hypothetical protein	NA	NA	NA	NA
WP_014003687.1\|53339_53621_+	hypothetical protein	NA	NA	NA	NA
WP_081254359.1\|54584_57308_+	EAL domain-containing protein	G3MA91	Bacillus_virus	2.0e-21	33.8
WP_148262264.1\|58876_59425_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

150987 : 189001

uncultured_Mediterranean_phage(15.38%)

transposase,integrase

attL 145517:145531|attR 156763:156777

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
145517:145531	attL	NA	NA	NA	NA
WP_014003781.1\|150987_151911_+\|integrase	tyrosine-type recombinase/integrase	A0A2K9VH72	Gordonia_phage	4.2e-11	28.0
WP_041638116.1\|151936_152260_-	hypothetical protein	NA	NA	NA	NA
WP_103415184.1\|153066_154587_-\|transposase	transposase	A0A0H3UZK2	Geobacillus_virus	3.0e-62	32.4
WP_049784773.1\|154748_155048_+	hypothetical protein	NA	NA	NA	NA
WP_014003784.1\|155191_160486_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	2.9e-56	22.7
156763:156777	attR	NA	NA	NA	NA
WP_014002165.1\|160783_161569_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.5e-30	35.0
WP_014002164.1\|161577_163101_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.8e-46	33.5
WP_009566302.1\|165924_166146_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_014003786.1\|166145_166559_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_148262257.1\|166513_170509_+	N-6 DNA methylase	A0A1B1IUC6	uncultured_Mediterranean_phage	8.1e-43	24.2
WP_014003789.1\|170660_171443_+	HNH endonuclease	NA	NA	NA	NA
WP_148262258.1\|171522_171942_+	hypothetical protein	NA	NA	NA	NA
WP_187288686.1\|172048_172186_-	hypothetical protein	NA	NA	NA	NA
WP_014003790.1\|172383_172632_-	hypothetical protein	NA	NA	NA	NA
WP_014003791.1\|172641_174405_-	DUF4942 domain-containing protein	I1ZBH6	Salisaeta_icosahedral_phage	1.1e-07	29.7
WP_014003792.1\|174408_174696_-	hypothetical protein	NA	NA	NA	NA
WP_041638124.1\|175237_175513_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	3.5e-14	46.7
WP_014003795.1\|175933_176281_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.4e-20	50.5
WP_014002983.1\|177103_178132_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014003798.1\|178918_179578_-	reverse transcriptase/maturase	NA	NA	NA	NA
WP_014003799.1\|179639_180428_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.6e-59	47.8
WP_049784790.1\|180427_181627_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	2.1e-34	31.4
WP_014003801.1\|181720_182329_-	elongation factor GreAB	A0A0U4J920	Pseudomonas_phage	3.2e-23	43.5
WP_014003803.1\|183579_183723_+	hypothetical protein	NA	NA	NA	NA
WP_064306286.1\|183989_184529_-	Slp family lipoprotein	NA	NA	NA	NA
WP_014003805.1\|185131_185887_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_014003806.1\|185956_186355_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_187288687.1\|186558_187803_+	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA
WP_012387019.1\|187786_189001_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.8e-09	26.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015850

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015854

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_015851

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection