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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017168 Yersinia pestis A1122, complete sequence 5 crisprs cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DEDDh,DinG 4 10 17 1
NC_017169 Yersinia pestis A1122 plasmid unnamed, complete sequence 0 crisprs NA 0 0 2 0
NC_017170 Yersinia pestis A1122 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_017168
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017168_1 400370-400449 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017168_2 1342455-1342567 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017168_3 2866823-2867153 Orphan I-F
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017168_4 2992631-2993139 TypeI-F I-F
8 spacers
cas1,cas3f,cas8f,cas5f,cas7f,cas6f

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017168_5 3885209-3885418 Orphan I-F
3 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017168_3 3.1|2866851|32|NC_017168|CRISPRCasFinder,CRT 2866851-2866882 32 NC_017168.1 3381904-3381935 0 1.0
NC_017168_3 3.5|2867093|33|NC_017168|CRISPRCasFinder,CRT,PILER-CR 2867093-2867125 33 NC_017168.1 3379217-3379249 0 1.0
NC_017168_4 4.1|2992659|33|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992659-2992691 33 NC_017168.1 3381589-3381621 0 1.0
NC_017168_4 4.2|2992720|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992720-2992751 32 NC_017168.1 3387470-3387501 0 1.0

1. spacer 3.1|2866851|32|NC_017168|CRISPRCasFinder,CRT matches to position: 3381904-3381935, mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

2. spacer 3.5|2867093|33|NC_017168|CRISPRCasFinder,CRT,PILER-CR matches to position: 3379217-3379249, mismatch: 0, identity: 1.0

aacgaacccacgtagaattgccatcaccgccgg	CRISPR spacer
aacgaacccacgtagaattgccatcaccgccgg	Protospacer
*********************************

3. spacer 4.1|2992659|33|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to position: 3381589-3381621, mismatch: 0, identity: 1.0

ccgcagctatcacgccagagattcaggcattga	CRISPR spacer
ccgcagctatcacgccagagattcaggcattga	Protospacer
*********************************

4. spacer 4.2|2992720|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to position: 3387470-3387501, mismatch: 0, identity: 1.0

ctgatgggtaactttaatcccaaattcttttt	CRISPR spacer
ctgatgggtaactttaatcccaaattcttttt	Protospacer
********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017168_3 3.1|2866851|32|NC_017168|CRISPRCasFinder,CRT 2866851-2866882 32 MT374852 Yersinia phage vB_YpM_3, complete genome 12-43 0 1.0
NC_017168_5 5.4|3885301|28|NC_017168|PILER-CR 3885301-3885328 28 MH616963 CrAssphage sp. isolate ctbg_1, complete genome 86944-86971 5 0.821
NC_017168_5 5.4|3885301|28|NC_017168|PILER-CR 3885301-3885328 28 MT774386 CrAssphage cr110_1, complete genome 42860-42887 5 0.821
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK820641 Gordonia phage EnalisNailo, complete genome 34088-34119 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK878898 Gordonia phage Zameen, complete genome 34513-34544 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK919483 Gordonia phage Suscepit, complete genome 34514-34545 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK284520 Gordonia phage Lilas, complete genome 35799-35830 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK016492 Gordonia phage Bialota, complete genome 35265-35296 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK820642 Gordonia phage Polly, complete genome 33956-33987 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 NC_041883 Gordonia phage Attis, complete genome 31646-31677 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK814755 Gordonia phage Antonio, complete genome 34513-34544 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK875796 Gordonia phage Tayonia, complete genome 34513-34544 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK801734 Gordonia phage LordFarquaad, complete genome 31627-31658 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 MK433274 Gordonia phage Bradissa, complete genome 34554-34585 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 KU963257 Gordonia phage Kita, complete genome 34522-34553 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 NC_031251 Gordonia phage SoilAssassin, complete genome 31645-31676 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 NC_031097 Gordonia phage Zirinka, complete genome 35253-35284 6 0.812
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 NZ_CP005086 Sphingobium sp. TKS plasmid pTK2, complete sequence 138555-138586 6 0.812
NC_017168_5 5.4|3885301|28|NC_017168|PILER-CR 3885301-3885328 28 NZ_CP028934 Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence 25851-25878 6 0.786
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 NZ_AP014579 Burkholderia sp. RPE67 plasmid p1, complete sequence 440819-440850 7 0.781
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 282870-282901 7 0.781
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 KJ433975 Mycobacterium phage 40BC, complete genome 23231-23262 7 0.781
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 KJ433973 Mycobacterium phage 39HC, complete genome 23231-23262 7 0.781
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 NC_024145 Mycobacterium phage Hosp, complete genome 21427-21458 7 0.781
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 JF974294 Aeromonas phage pIS4-A genomic sequence 21965-21996 7 0.781
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NC_021534 Vibrio phage pYD38-A genomic sequence 3299-3330 7 0.781
NC_017168_4 4.8|2993080|32|NC_017168|CRISPRCasFinder,CRT 2993080-2993111 32 CP049262 Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence 69636-69667 7 0.781
NC_017168_5 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT 3885297-3885328 32 MH616963 CrAssphage sp. isolate ctbg_1, complete genome 86942-86973 7 0.781
NC_017168_5 5.4|3885301|28|NC_017168|PILER-CR 3885301-3885328 28 MK415408 CrAssphage GF1-2_000079F, complete genome 71106-71133 7 0.75
NC_017168_4 4.2|2992720|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992720-2992751 32 NZ_CP047125 Lactobacillus hilgardii strain FLUB plasmid unnamed4 1912-1943 8 0.75
NC_017168_4 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992780-2992811 32 NZ_CP024873 Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence 14979-15010 8 0.75
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP029117 Escherichia coli strain AR435 plasmid unnamed4 112580-112611 8 0.75
NC_017168_5 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT 3885297-3885328 32 NZ_CP010358 Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence 46720-46751 8 0.75
NC_017168_5 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT 3885297-3885328 32 NC_019694 Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence 20911-20942 8 0.75
NC_017168_3 3.2|2866911|33|NC_017168|CRISPRCasFinder,CRT,PILER-CR 2866911-2866943 33 NZ_CP040366 Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence 923-955 9 0.727
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 MF679145 Escherichia coli plasmid pBJ114-96, complete sequence 37586-37617 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_KP453775 Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence 60831-60862 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP021340 Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence 67671-67702 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP021336 Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence 67672-67703 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP040920 Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence 33435-33466 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP024832 Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence 33830-33861 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP024817 Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence 62769-62800 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP029117 Escherichia coli strain AR435 plasmid unnamed4 15616-15647 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP023961 Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence 16858-16889 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 AP023222 Escherichia coli M505 plasmid pM505-b DNA, complete genome 93734-93765 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 AP023233 Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome 47570-47601 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP019075 Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence 16520-16551 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP015837 Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence 3287-3318 9 0.719
NC_017168_4 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992960-2992991 32 NZ_CP011063 Escherichia coli str. Sanji plasmid pSJ_98, complete sequence 37637-37668 9 0.719
NC_017168_4 4.7|2993020|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2993020-2993051 32 NZ_CP031943 Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence 4006-4037 9 0.719
NC_017168_5 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT 3885297-3885328 32 MT774386 CrAssphage cr110_1, complete genome 42858-42889 9 0.719
NC_017168_5 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT 3885297-3885328 32 NZ_CP028934 Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence 25849-25880 9 0.719
NC_017168_4 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992900-2992931 32 NZ_JX627581 Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence 30496-30527 10 0.688
NC_017168_4 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992780-2992811 32 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 815356-815387 11 0.656
NC_017168_4 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992780-2992811 32 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 820287-820318 11 0.656
NC_017168_4 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992780-2992811 32 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 2180994-2181025 11 0.656
NC_017168_4 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT 2992780-2992811 32 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 2185925-2185956 11 0.656

1. spacer 3.1|2866851|32|NC_017168|CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 0, identity: 1.0

tctgtacgcataccgccatcttgcatcagtct	CRISPR spacer
tctgtacgcataccgccatcttgcatcagtct	Protospacer
********************************

2. spacer 5.4|3885301|28|NC_017168|PILER-CR matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 5, identity: 0.821

aagttctttttgtcagcatctttaataa	CRISPR spacer
ataatctttttatcagcatcttttataa	Protospacer
* . *******.*********** ****

3. spacer 5.4|3885301|28|NC_017168|PILER-CR matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 5, identity: 0.821

aagttctttttgtcagcatctttaataa	CRISPR spacer
agtttctttttatcagcatcttcaatag	Protospacer
*. ********.**********.****.

4. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

5. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

6. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

7. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

8. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

9. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

10. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

11. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

12. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

13. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

14. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

15. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

16. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

17. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
tcgcgagcgcgctcaggatcacggcg-gacgac	Protospacer
******.********** ****** . *.*** 

18. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

--tcgcgaacgcgctcaggttcacggaatggcga	CRISPR spacer
ggtcacga--tcgctcaggttcagggaaaggcga	Protospacer
  **.***   ************ **** *****

19. spacer 5.4|3885301|28|NC_017168|PILER-CR matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 6, identity: 0.786

aagttctttttgtcagcatctttaataa	CRISPR spacer
actttctttttgtcagcgtctgtaatgt	Protospacer
*  **************.*** ****. 

20. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga----	CRISPR spacer
tcgcgaacgcgcccaggttcccg----agcgaggtg	Protospacer
************.******* **    .****    

21. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga----	CRISPR spacer
tcgcgaacgcgcccaggttcccg----agcgaggtg	Protospacer
************.******* **    .****    

22. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
gcgcgaacgcgctcgggtacacgg-gcggcggg	Protospacer
 *************.*** ***** ..****. 

23. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
gcgcgaacgcgctcgggtacacgg-gcggcggg	Protospacer
 *************.*** ***** ..****. 

24. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

tcgcgaacgcgctcaggttcacggaatggcga-	CRISPR spacer
gcgcgaacgcgctcgggtacacgg-gcggcggg	Protospacer
 *************.*** ***** ..****. 

25. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
atcaggcataaagcaaatgccattcaggtaat	Protospacer
*** *   .**** *************.****

26. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
atcaggcataaagcaaatgccattcaggtaat	Protospacer
*** *   .**** *************.****

27. spacer 4.8|2993080|32|NC_017168|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

atcatgaaagacattgttcgccagtcccctga	CRISPR spacer
atcatgaaagagattgttcgccagcgcgacgt	Protospacer
*********** ************. *  .* 

28. spacer 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 7, identity: 0.781

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
taataatctttttatcagcatcttttataatt	Protospacer
* * . *******.*********** **** *

29. spacer 5.4|3885301|28|NC_017168|PILER-CR matches to MK415408 (CrAssphage GF1-2_000079F, complete genome) position: , mismatch: 7, identity: 0.75

aagttctttttgtcagcatctttaataa	CRISPR spacer
ataagacttttatcagcatctttaataa	Protospacer
* .   .****.****************

30. spacer 4.2|2992720|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047125 (Lactobacillus hilgardii strain FLUB plasmid unnamed4) position: , mismatch: 8, identity: 0.75

ctgatgggtaactttaatcccaaattcttttt	CRISPR spacer
attttgaataactttaatcccaaaagctttta	Protospacer
 *  **..****************  ***** 

31. spacer 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024873 (Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence) position: , mismatch: 8, identity: 0.75

tgttaaatcgtcgcctaaatttgtttgaccga	CRISPR spacer
tttagaatcgtcgcctcaacttgtttgagtaa	Protospacer
* * .*********** **.******** ..*

32. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 8, identity: 0.75

atctgc-gccaaagaaaatgccattcagataat	CRISPR spacer
-taaacagttaaagaaactgccaatcagataat	Protospacer
 *  .* *..******* ***** *********

33. spacer 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 8, identity: 0.75

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
gtgccatattttcgtcagcatcattaataaat	Protospacer
 *.   * ****.********* *********

34. spacer 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT matches to NC_019694 (Oscillatoria acuminata PCC 6304 plasmid pOSCIL6304.02, complete sequence) position: , mismatch: 8, identity: 0.75

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
ttgatgctcttttggcagcttctttaataaat	Protospacer
**.*  ...***** **** ************

35. spacer 3.2|2866911|33|NC_017168|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040366 (Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence) position: , mismatch: 9, identity: 0.727

agcaaaaatcttaattacatctgatgatttcgg	CRISPR spacer
ggaaaaaaacttaattacatctgataatccatt	Protospacer
.* ***** ****************.**..   

36. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

37. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

38. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

39. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

40. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

41. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

42. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

43. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

44. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

45. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

46. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

47. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

48. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

49. spacer 4.6|2992960|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

atctgcgccaaagaaaatgccattcagataat	CRISPR spacer
aaaacagttaaagaaactgccaatcagataat	Protospacer
*     *..******* ***** *********

50. spacer 4.7|2993020|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031943 (Nostoc sphaeroides strain Kutzing En plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

aactactagaagcttgcccatcttaccttttc	CRISPR spacer
taccactaaaagcttgcccatctttctcataa	Protospacer
 **.****.*************** *.. *  

51. spacer 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 9, identity: 0.719

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
caagtttctttttatcagcatcttcaatagca	Protospacer
. *. ********.**********.****.  

52. spacer 5.2|3885297|32|NC_017168|CRISPRCasFinder,CRT matches to NZ_CP028934 (Campylobacter jejuni strain FORC_083 plasmid pFORC_083_2, complete sequence) position: , mismatch: 9, identity: 0.719

ttaagttctttttgtcagcatctttaataaat	CRISPR spacer
taactttctttttgtcagcgtctgtaatgtgc	Protospacer
* *  **************.*** ****. ..

53. spacer 4.5|2992900|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgcgaacgcgctcaggttcacggaatggcga	CRISPR spacer
acgcgaatgcgctgaggttcacggctcgttag	Protospacer
 ******.***** **********  .* ...

54. spacer 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tgttaaatcgtcgcctaaatttgtttgaccga	CRISPR spacer
cagcggctccttgcctaaatttgtttgaccac	Protospacer
.. ... ** *.******************. 

55. spacer 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tgttaaatcgtcgcctaaatttgtttgaccga	CRISPR spacer
cagcggctccttgcctaaatttgtttgaccac	Protospacer
.. ... ** *.******************. 

56. spacer 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

tgttaaatcgtcgcctaaatttgtttgaccga	CRISPR spacer
cagcggctccttgcctaaatttgtttgaccac	Protospacer
.. ... ** *.******************. 

57. spacer 4.3|2992780|32|NC_017168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.656

tgttaaatcgtcgcctaaatttgtttgaccga	CRISPR spacer
cagcggctccttgcctaaatttgtttgaccac	Protospacer
.. ... ** *.******************. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 15090 : 90916 54 Escherichia_phage(20.0%) transposase,tRNA,plate,protease NA
DBSCAN-SWA_2 244969 : 262478 7 Tupanvirus(50.0%) transposase NA
DBSCAN-SWA_3 475223 : 531825 53 Clostridium_phage(33.33%) transposase,holin NA
DBSCAN-SWA_4 552648 : 599120 38 Clostridium_phage(28.57%) transposase,tRNA,plate NA
DBSCAN-SWA_5 974787 : 1020345 38 Escherichia_phage(28.57%) transposase,protease NA
DBSCAN-SWA_6 1548020 : 1626938 54 Escherichia_phage(15.38%) transposase,plate NA
DBSCAN-SWA_7 1721152 : 1780827 51 Escherichia_phage(15.38%) holin,transposase,protease NA
DBSCAN-SWA_8 2044626 : 2099186 48 Escherichia_phage(47.37%) transposase,tRNA NA
DBSCAN-SWA_9 2415501 : 2484309 60 Escherichia_phage(33.33%) transposase,tRNA,plate NA
DBSCAN-SWA_10 3310327 : 3409824 101 Escherichia_phage(14.55%) tRNA,lysis,tail,integrase,transposase,holin attL 3357518:3357548|attR 3399242:3399272
DBSCAN-SWA_11 3683295 : 3722380 31 Escherichia_phage(14.29%) transposase,coat,protease NA
DBSCAN-SWA_12 3794230 : 3847626 48 Clostridium_phage(23.08%) transposase,tRNA NA
DBSCAN-SWA_13 3924914 : 3972628 40 Escherichia_phage(16.67%) transposase,tRNA,lysis,plate NA
DBSCAN-SWA_14 4031980 : 4075670 41 Clostridium_phage(16.67%) transposase,tRNA,protease NA
DBSCAN-SWA_15 4119585 : 4167381 38 Clostridium_phage(20.0%) transposase,tRNA,integrase attL 4152600:4152659|attR 4167467:4168179
DBSCAN-SWA_16 4200923 : 4243773 41 Planktothrix_phage(16.67%) transposase,holin,protease NA
DBSCAN-SWA_17 4286901 : 4332243 39 Pseudomonas_phage(23.81%) tail,plate,transposase,coat,protease NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_017168.1|WP_002214494.1|3352853_3353210_-|hypothetical-protein 3352853_3353210_- 118 aa aa NA NA NA 3310327-3409824 yes
2. NC_017169
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 69766 74 Salmonella_phage(77.36%) transposase,terminase,integrase attL 14189:14204|attR 66033:66048
DBSCAN-SWA_2 73073 : 96103 20 Salmonella_phage(80.0%) tail,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage