CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017250	Brucella suis 1330 chromosome II, complete sequence	1 crisprs	csa3,cas3,DEDDh	0	0	0	0
NC_017251	Brucella suis 1330 chromosome I, complete sequence	0 crisprs	csa3,WYL,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017250_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017250_1

179334-179434

Orphan

Consensus_repeat	Method
ATGGACTTCTTGGAAGTCCATGCCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017250_1

>merge|NC_017250|1|179334-179434|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCCCCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTTATGGACTTCTTAGAAGTCCATGCCGCCC

>NC_017250|1|1|179334-179434|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCC	CCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTT
ATGGACTTCTTAGAAGTCCATGCCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017250.1\|WP_024768047.1\|189546_191292_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NC_017250.1\|WP_002966391.1\|176363_176765_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_017250.1\|WP_004681424.1\|170699_171317_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_017250.1\|WP_005971898.1\|172944_174075_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NC_017250.1\|WP_006073322.1\|181923_182772_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NC_017250.1\|WP_002966377.1\|191272_191836_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NC_017250.1\|WP_002966398.1\|168950_169685_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|224294
NC_017250.1\|WP_006015192.1\|178408_178663_-\|hypothetical-protein	unknown	unknown	unknown
NC_017250.1\|WP_002966383.1\|182859_183849_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_017250.1\|WP_002966390.1\|176867_178259_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NC_017250.1\|WP_004692532.1\|167847_168675_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381357
NC_017250.1\|WP_002971287.1\|187302_187974_+\|hypothetical-protein	unknown	unknown	unknown
NC_017250.1\|WP_002966386.1\|181146_181443_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_017250.1\|WP_002967189.1\|169924_170581_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NC_017250.1\|WP_002966380.1\|188318_188879_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NC_017250.1\|WP_004690017.1\|171427_172936_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NC_017250.1\|WP_006191697.1\|188932_189406_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_017250.1\|WP_006191694.1\|184192_187111_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NC_017250.1\|WP_006073333.1\|193467_193779_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_017250.1\|WP_004690018.1\|174071_174767_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438

Protein	Function_ID	Function_description	E-value
NC_017250.1\|WP_004690017.1\|171427_172936_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	6.87005e-159
NC_017250.1\|WP_002966391.1\|176363_176765_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.4232e-20
NC_017250.1\|WP_004681424.1\|170699_171317_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.14786e-45
NC_017250.1\|WP_005971898.1\|172944_174075_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	1.01993e-156
NC_017250.1\|WP_002966377.1\|191272_191836_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.21532e-78
NC_017250.1\|WP_024768047.1\|189546_191292_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.00637e-82
NC_017250.1\|WP_002966398.1\|168950_169685_-\|L,D-transpeptidase	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	1.69228e-59
NC_017250.1\|WP_004690018.1\|174071_174767_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	1.83362e-134
NC_017250.1\|WP_002966383.1\|182859_183849_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.77791e-157
NC_017250.1\|WP_002966390.1\|176867_178259_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NC_017250.1\|WP_004692532.1\|167847_168675_-\|aldo/keto-reductase	gnl\|CDD\|381357	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins. Escherichia coli DkgA/YqhE is a founding member of aldo-keto reductase family 5 member C2 (AKR5C2). DkgA/YqhE (EC 1.1.1.274), also called 2,5-DKG reductase A, or 2,5-DKGR A, or 25DKGR-A, or AKR5C, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG). It is also capable of stereoselective -keto ester reductions on ethyl acetoacetate and other 2-substituted derivatives.	8.73712e-178
NC_017250.1\|WP_002966386.1\|181146_181443_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.80408e-54
NC_017250.1\|WP_002967189.1\|169924_170581_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.88001e-109
NC_017250.1\|WP_002966380.1\|188318_188879_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	3.34911e-53
NC_017250.1\|WP_006073322.1\|181923_182772_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.96029e-90
NC_017250.1\|WP_006191697.1\|188932_189406_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.95016e-64
NC_017250.1\|WP_006191694.1\|184192_187111_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NC_017250.1\|WP_006073333.1\|193467_193779_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.26407e-11

>NC_017250.1|WP_006015192.1|178408_178663_-|hypothetical-protein
MRKELPIETAPKDGRKITVIWIDDDDQRNESIAQYRTLEQLRAGGGQWDEADTGWWTFTDSKTQRKIEPTAWIRETDDDESQED
>NC_017250.1|WP_002966390.1|176867_178259_-|class-II-fumarate-hydratase
MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVGFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
>NC_017250.1|WP_002966391.1|176363_176765_-|DoxX-family-protein
MSSITPKANGAATLIIRVFLSVLFIIAGYNKLTALDGTADYFASIGLPMPIVTAVVVGLIEFVGGLAILFGFKTRIAAVIVGLFTLGATLVAHMDFAEGMNLLIAQKNLAIAGGLFLLFLHGAGSLSIDARRG
>NC_017250.1|WP_004690018.1|174071_174767_+|ATP-phosphoribosyltransferase
MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARELGYGSVDLGVTGEDLARETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGIILRSQACLVSARRSHTSRRVEEIAARIRAGLEI
>NC_017250.1|WP_005971898.1|172944_174075_+|ATP-phosphoribosyltransferase-regulatory-subunit
MVGSRTSPIFNALRVELNAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGAADEAASDARSLADALSCVKAIAPDAPLEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDAHSMDLALAELTGTQRRDPLPESLAVLVAEGDEIGLARMLEAEMLEAGISPGAGRTPVEIARRLIEKEDLAATHFPAAALDLLRQFLAIRVSLDTAAVTLRAFAADNALDLGAVLQKFEARADAIAQAGIEMKDIIYDASFGRPLDYYTGLVYEIRDASNRQDGVLAGGGRYDRLLTMLGACEAIPGVGFSIWLDRLQALAGEKQ
>NC_017250.1|WP_004690017.1|171427_172936_+|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTLERLGIQRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLAFTAAGGADGAQTIANLQAVVAGNAEGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDTVGPVVVLVMDKDTQNLGRYQKMVSDLRKAGIRAEMYVGGSGMKAQMKYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWRESRPAQITVREDGLVDAVREILDAQARDRAEQSK
>NC_017250.1|WP_004681424.1|170699_171317_+|LysE-family-translocator
MDLMSLVAFAGILVVAAGTPGPNVGALVARVISRGHKGVFPFMFGLWLGDAVWLSLAVWGLSALAHTFQTAFLVLKYAGVAYLIYLSWKMWFAPVDEEADENTIPRQGEGKRLFLSALGVTLGNPKIMVFYLAILPTVVDITHVSLTGWVELLLVMFMVLAAVDTAWVVLAAQARKFLRSPRMMRLANRTSAGMMAGAAVAIAAR
>NC_017250.1|WP_002967189.1|169924_170581_+|DNA-3-methyladenine-glycosylase-I
MSDMAEARAGLVVGADGRTRCFWPGELPDYLAYHDNEWGVPVADDFRLFEKICLEGFQSGLSWLTILRKRENFRAAFDGFNFHRIATYDESDVERLLADKGIVRHRGKIVSVINNAGRAIELIEEKGSLAAYFWSFEPGAENRPAVVDYPTLVANPITATSTRISKDLKKRGWSFVGPTTVYAFMQAMGLVNDHIEGCHCRATIEKLRQNFKRPGKKL
>NC_017250.1|WP_002966398.1|168950_169685_-|L,D-transpeptidase
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAPARPRIARQETRKTKTHYNKVSYQRPATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASRFLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTWTPPSEMIARERKKGRFLPARMDGGINNPLGARALYLGSTLYRIHGTNQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTRVVVR
>NC_017250.1|WP_004692532.1|167847_168675_-|aldo/keto-reductase
MTVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEKGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLDMADGRIGPNPSVFSA
>NC_017250.1|WP_002966386.1|181146_181443_-|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NC_017250.1|WP_006073322.1|181923_182772_+|TIGR01459-family-HAD-type-hydrolase
MILPERLDDLTDRYDAIFCDVWGVVHNGETSFAPAIAALQRARAKGVTIILVTNSPRPHPGVVAQMSLLGVPENAYDRVVTSGDVTRDLIAEGPRRIFHIGCERELAIYDGLDVELVEEFEAAGVVCTGLYDDEVETPEDYRELLQRLRSRNLPFICANPDIMVERGPRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRAVESIRGGSVDKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYAVNGDLDMAKMEAFLEKHGHRPIASLHALV
>NC_017250.1|WP_002966383.1|182859_183849_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKKSSFQRLTGTEGLPPALHDCVVAIGNFDGVHRGHQAVLERALELAERESRPAVVLTFEPHPRSFFKQDQPVDRLTDAAEKAEILRLMGFDAVMEQPFTAEFSQRSAEDFVQHILVEKLRASRVVTGYDFHFGKGRRGTPEFLCEAGKKAGFSVTLVDAFTDEGGMLVSSTRIRNLLSEGEVAEAAGLLGYRYRICGEVIHGKKLGRTLGFPTANMALAPQTSLKHGIYAVRFRLDDAMLYDGVASFGRRPTVDDEGAPLLETFLFDFSGDLYGKTAAVSFFGFLRGEVKFDGLDPLIDQMKQDEAQARALLADVRPISGLDRMLSFN
>NC_017250.1|WP_006191694.1|184192_187111_+|isoleucine--tRNA-ligase
MTDTTKIDYSKTLYLPQTEFPIRAGLPQREPLFVQRWEEMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAAGKNKDEVPINEFRKECRELASNWIKVQTEEFKRLAILGDFENPYTTMNFHAEARIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVAGEVATENDLSGSAVVIWTTTPWTIPGNRAVSYSSRIEYGLFEITEAENDFGPRPGERLVFADKLVEECCAKAKLQFKRLRSVSAEELGKIVLDHPLKGFGGGYEFVVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMDNARQLEARGIDPNIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKVVIEQLIAADKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDETRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRIMDAFEKEGADAWFADGARERFLGARAGEGWTQVRDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENVAYADLPELERLMLHRLTELDELVRSGYDTFDFKRIARALVDFMNVELSAFYFDIRKDALYCDAPSSIRRKAALQTVREIFVRLTTWLAPMLPFTMEEAWLDRYPQSVSIHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLSDSLEGLDFAEICITSGISVSDAAAPEGAFTLGDVKGVAVVPERAKGEKCARSWRYTTDVGADPEFPEVSARDAAALRELQALGKL
>NC_017250.1|WP_002971287.1|187302_187974_+|hypothetical-protein
MKIEGRVLVLMTALAGLSLSGCVSSPTYGTDKSAGAQLLDDVSNMASFGQGKKKERIDYKPRPDLVRPAPGDKGYLPAPQQSLASSSDPNWPESPEQRRKRVRDEITAHRDDPNYVSPVLQDAPVADNIRTALPRGNSRREDYASRTPTSDPAKVAALKAARAQQNQGSATTRRYLSEPPLAYRQPASTAAVGELGPDEAQKERERKKAASGSRGWRDYLPWN
>NC_017250.1|WP_002966380.1|188318_188879_+|cytochrome-b
MSSKTYIWDDRSGYGLVSRGFHWLMALLFLWQFASAILRVFAKDTPIYSFFWSAHFQLGFALLVLALLRGVWGLMNIHRRPHKDGAIGKLAVLGHLAIYVLMITIPSLALLRAYGSGRGFSFLGMPIFAKTDIQNAMLTAPANALHGPLGWVLLAAIVGHVAMALVHHFALRDDTLRYMTGHGTPN
>NC_017250.1|WP_006191697.1|188932_189406_-|nucleoside-deaminase
MRKAASITKANSATPMDIALEEAHAAGERGEVPIGAVIVRDGEIIARAGNRTREFNDVTAHAEILIIRQAGEMLGSERLIDCDLYVTLEPCAMCAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQPTCHHAPEIYPGFCEADARKILKDFFREKR
>NC_017250.1|WP_024768047.1|189546_191292_+|pseudouridine-synthase
MMAQGDAVTLLKGLYQMTTEDDNKGGKPPHGRKGHSDRPGRPDRDSRPRREGGDRDKPRKFGSRGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGELPQEGERRRAPREREWISSTGERRRGREEKTEKVEPRRRGNANVWMAPGARPKGEKEAAKPARVEHQQPHRSAKFSGDLQMRPRRFSEEERGGEESGERRYKRPEGRFEREGGRPDNREKYEKHEGAGKERRPGKRERAELRNAEGQTTERGKGGFEGRKPGKPGGPRSEGRFGGADRDTRSGPRGSGPRGAGDGPRRGHDGKPGGKPGGKPTGRPGGKPGTKPGGGGRSGGGGADRRR
>NC_017250.1|WP_002966377.1|191272_191836_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGLEALSRGARYATFVEESAEGRGILRQNIEALGLQGHTKILRRDACQLGIVGTMEPFDLVFADPPYGRRMGEKAFLSALQGGWLNPDALLVLEEDAQAALELDDRFAVREERNYGGTVIRLIELKAAS
>NC_017250.1|WP_006073333.1|193467_193779_+|insulinase-family-protein
MNLSMSNFKRAFPLRGALHDARAVAGLLAASFTMLIVCALPARAIEIQEVVSPKGIHAWLVEDNSVPLVSMRFSFKGGASQDPSGKEGIANLMTGLFDEGADR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

463222 : 528795

Tupanvirus(15.38%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004691967.1\|463222_464635_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_002963624.1\|464776_465403_-	invasion associated locus B family protein	NA	NA	NA	NA
WP_006133224.1\|465836_466691_+	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_004691966.1\|466828_468487_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	3.2e-09	36.3
WP_004683128.1\|468714_469662_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_004683131.1\|469661_469847_+	hypothetical protein	NA	NA	NA	NA
WP_004690616.1\|469866_470472_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_002963630.1\|470680_471559_+	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_004688061.1\|471672_472056_+	DUF983 domain-containing protein	NA	NA	NA	NA
WP_004683138.1\|472052_472802_+	SURF1 family protein	NA	NA	NA	NA
WP_006189939.1\|472910_473951_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_004690619.1\|473956_474937_+	homoserine kinase	NA	NA	NA	NA
WP_002963635.1\|474933_475398_+	ribonuclease HI	J9Q745	Salmonella_phage	1.7e-40	53.6
WP_002963636.1\|475427_475913_-	peroxiredoxin	M1I839	Pelagibacter_phage	3.0e-24	46.8
WP_004690620.1\|476092_476893_-	hypothetical protein	NA	NA	NA	NA
WP_004683145.1\|477027_477630_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_004690621.1\|477727_480622_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_002963640.1\|480618_481239_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004690622.1\|481409_482702_-	insulinase family protein	A0A2K9L1M6	Tupanvirus	1.1e-33	28.1
WP_004690623.1\|482755_484147_-	threonine synthase	NA	NA	NA	NA
WP_004688070.1\|484568_485147_+	hypothetical protein	NA	NA	NA	NA
WP_004691963.1\|485460_487095_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004690627.1\|487223_487409_+	hypothetical protein	NA	NA	NA	NA
WP_004689516.1\|490411_491545_+	site-specific DNA-methyltransferase	A0A249XUJ2	Enterococcus_phage	4.7e-28	30.4
WP_006189945.1\|491627_492245_-	HAD family phosphatase	NA	NA	NA	NA
WP_004690628.1\|492241_493318_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002971552.1\|493283_493430_-	hypothetical protein	NA	NA	NA	NA
WP_004689517.1\|493591_494119_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_002971551.1\|494356_495010_+	DsbA family protein	NA	NA	NA	NA
WP_006189948.1\|495088_498547_+	chromosome segregation protein SMC	NA	NA	NA	NA
WP_004691958.1\|498569_499463_+	cation transporter	NA	NA	NA	NA
WP_002967466.1\|499572_499914_-	glyoxalase	NA	NA	NA	NA
WP_006197018.1\|500177_502841_+	pyruvate, phosphate dikinase	A0A2D2W2B1	Stenotrophomonas_phage	3.1e-91	41.7
WP_004690635.1\|504872_505661_+	DUF1499 domain-containing protein	NA	NA	NA	NA
WP_005969743.1\|505661_506567_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002967469.1\|506767_507367_+	biotin transporter BioY	NA	NA	NA	NA
WP_004688080.1\|507520_508030_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_004690637.1\|508041_508398_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_004690638.1\|508468_509305_+	DUF2793 domain-containing protein	A0A0B5A0F6	Paracoccus_phage	2.5e-39	45.2
WP_006189954.1\|509841_511710_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.2e-17	28.4
WP_002963669.1\|511696_512704_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_129171622.1\|512585_512858_+	hypothetical protein	NA	NA	NA	NA
WP_078056933.1\|514792_515143_+\|transposase	transposase	NA	NA	NA	NA
WP_006189959.1\|516572_517352_-	LPS biosynthesis N-formyltransferase WbkC	E3SNR5	Prochlorococcus_phage	3.3e-09	31.4
WP_004691951.1\|517378_518233_-	hypothetical protein	NA	NA	NA	NA
WP_006189961.1\|518229_518988_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_004683211.1\|518984_519767_-	ABC transporter permease	NA	NA	NA	NA
WP_004690643.1\|519781_520885_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2K9L470	Tupanvirus	2.0e-44	31.9
WP_002963680.1\|520892_521981_-	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	3.4e-137	68.4
WP_029097245.1\|523106_524045_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_099686909.1\|524114_524871_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.4e-15	40.2
WP_002963682.1\|525242_526361_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_077281774.1\|527118_527271_-	hypothetical protein	NA	NA	NA	NA
WP_006072314.1\|527313_527868_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_112861095.1\|528032_528795_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	8.0e-24	42.5

DBSCAN-SWA_2

854145 : 866072

uncultured_Mediterranean_phage(90.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002968731.1\|854145_854997_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-31	33.5
WP_006190130.1\|854989_855715_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
WP_002964012.1\|855860_856079_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
WP_004686803.1\|856189_856771_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_002964014.1\|856767_857592_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.8e-44	41.1
WP_004690784.1\|857668_858952_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.5e-104	47.0
WP_004683703.1\|859100_859868_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-39	40.2
WP_004683704.1\|859864_860533_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.6e-14	38.5
WP_002964018.1\|860677_860863_+	hypothetical protein	NA	NA	NA	NA
WP_004690785.1\|860911_862210_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	1.0e-18	41.1
WP_002964020.1\|862258_863125_-	ATP-binding protein	NA	NA	NA	NA
WP_002964021.1\|863284_863626_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.1e-12	40.2
WP_006642797.1\|863744_866072_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-51	43.5

DBSCAN-SWA_3

939468 : 947821

Brucella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006072696.1\|939468_940188_+	hypothetical protein	A0A076GD06	Sinorhizobium_phage	4.6e-05	46.8
WP_002964091.1\|940184_940415_+	hypothetical protein	NA	NA	NA	NA
WP_002964092.1\|940411_940687_+	hypothetical protein	NA	NA	NA	NA
WP_004683738.1\|940709_941297_+	hypothetical protein	NA	NA	NA	NA
WP_004683739.1\|941531_942242_+	porin family protein	O11861	Bartonella_henselae_phage	5.1e-41	36.8
WP_002964095.1\|942589_942760_-	DUF1508 domain-containing protein	A0A2P1N580	Mycobacterium_phage	3.1e-05	45.1
WP_002964097.1\|943107_943422_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	6.9e-06	43.4
WP_004688321.1\|943421_943667_-	BrnT family toxin	NA	NA	NA	NA
WP_006132649.1\|945266_946040_+	hypothetical protein	A0A141GEY5	Brucella_phage	2.9e-122	97.3
WP_004689673.1\|946174_947821_+	hypothetical protein	A0A141GEY6	Brucella_phage	1.3e-175	62.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017250

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017251

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection