CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_017386	Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence	0 crisprs	NA	0	0
NC_017384	Ketogulonicigenium vulgare WSH-001, complete sequence	2 crisprs	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,WYL	7	5
NC_017385	Ketogulonicigenium vulgare WSH-001 plasmid 2, complete sequence	0 crisprs	NA	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_017384_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017384_1

1461978-1462671

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCCCCACGGGAGCGTGGATAGAAA	PILER-CR
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CRISPRCasFinder
GTCGCTCCCCCCACGGGAGCGTGGATAGAAACN	CRT

10 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_017384_1

>merge|NC_017384|1|1461978-1462671|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCCCCACGGGAGCGTGGATAGAAACCCCGATCCAACCGCGAAGTGGGCCAGCCGCGATGGTCGCTCCCCCCACGGGAGCGTGGATAGAAACACTGTCACTCCGACTTGGAGAGCATCTACAATGACGTCGCTCCCCCCACGGGAGCGTGGATAGAACCAGTTGGCGTGCGGGCGTCCACATCTGAATGATGGTCGCTCCCCCCACGGGAGCGTGGATAGAAACTCATTGTAGATGGTGGTATCGAAACGCGACACCTGTCGCTCCCCCCACGGGAGCGTGGATAGAAACTCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTGGTCGCTCCCCCCACGGGAGCGTGGATAGAAACTGCTTCCGGTAAAACTCCACCGCAGCGTGGAACGTCGCTCCCCCCACGGGAGCGTGGATAGAAACGATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGCGGTCGCTCCCCCACGGGAGCGTGGATAGAAACAGCGACCAATGGCGCGTAGCGACACCCTATCAGGACGTCGCTCCCCCCACGGGAGCGTGGATAGAAACTACGCTATGACCCAGATCCTCCGGGGGCGCGCAACGTCGCTCCCCCCACGGGAGCGTGGATAGAAACCCCAGCAGGCGCGGCGCAGACGACAGGCGGGACGGTCGCTCCCCCCACGGGAGCGGGGATAGAAAG

>NC_017384|1|1|1461978-1462670|PILER-CR
GTCGCTCCCCCCACGGGAGCGTGGATAGAAA	CCCCGATCCAACCGCGAAGTGGGCCAGCCGCGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAA	CACTGTCACTCCGACTTGGAGAGCATCTACAATGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAC	CAGTTGGCGTGCGGGCGTCCACATCTGAATGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAA	CTCATTGTAGATGGTGGTATCGAAACGCGACACCT
GTCGCTCCCCCCACGGGAGCGTGGATAGAAA	CTCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAA	CTGCTTCCGGTAAAACTCCACCGCAGCGTGGAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAA	CGATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGCGGTCGCT
CCCCCACGGGAGCGTGGATAGAAACAGCGAC	CAATGGCGCGTAGCGACACCCTATCAGGACGTCGCTC
CCCCCACGGGAGCGTGGATAGAAACTACGCT	ATGACCCAGATCCTCCGGGGGCGCGCAACGTCGCTC
CCCCCACGGGAGCGTGGATAGAAACCCCAGC	AGGCGCGGCGCAGACGACAGGCGGGACGGTCGCTC
CCCCCACGGGAGCGGGGATAGAAA

>NC_017384|1|1|1461978-1462671|CRISPRCasFinder
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CCCGATCCAACCGCGAAGTGGGCCAGCCGCGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	ACTGTCACTCCGACTTGGAGAGCATCTACAATGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAACC	AGTTGGCGTGCGGGCGTCCACATCTGAATGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TCATTGTAGATGGTGGTATCGAAACGCGACACCT
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TGCTTCCGGTAAAACTCCACCGCAGCGTGGAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	GATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGC
GGTCGCTCCCCCACGGGAGCGTGGATAGAAAC	AGCGACCAATGGCGCGTAGCGACACCCTATCAGGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TACGCTATGACCCAGATCCTCCGGGGGCGCGCAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CCCAGCAGGCGCGGCGCAGACGACAGGCGGGACG
GTCGCTCCCCCCACGGGAGCGGGGATAGAAAG

>NC_017384|1|1|1461978-1462671|CRT
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CCCGATCCAACCGCGAAGTGGGCCAGCCGCGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	ACTGTCACTCCGACTTGGAGAGCATCTACAATGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAACC	AGTTGGCGTGCGGGCGTCCACATCTGAATGATG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TCATTGTAGATGGTGGTATCGAAACGCGACACCT
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TCCCATAAAAAAACCCGCCTCTAAGGGCGGGCTG
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TGCTTCCGGTAAAACTCCACCGCAGCGTGGAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	GATGCCGTCCTCGCGTCCCTCCAATCCAGCGCGCG
GTCGCTCCCCCACGGGAGCGTGGATAGAAACA	GCGACCAATGGCGCGTAGCGACACCCTATCAGGAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	TACGCTATGACCCAGATCCTCCGGGGGCGCGCAAC
GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC	CCCAGCAGGCGCGGCGCAGACGACAGGCGGGACG
GTCGCTCCCCCCACGGGAGCGGGGATAGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017384.1\|WP_193365312.1\|1449899_1450565_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|181735
NC_017384.1\|WP_013384688.1\|1466633_1467509_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
NC_017384.1\|WP_013384680.1\|1458877_1459828_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_017384.1\|WP_013384676.1\|1451581_1453321_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|199835
NC_017384.1\|WP_013384679.1\|1457111_1458881_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_017384.1\|WP_013384685.1\|1464276_1464993_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NC_017384.1\|WP_013384687.1\|1465710_1466637_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NC_017384.1\|WP_013384686.1\|1464985_1465714_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213186
NC_017384.1\|WP_013384683.1\|1461510_1461801_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_017384.1\|WP_013384689.1\|1467608_1468832_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380561
NC_017384.1\|WP_013384684.1\|1462797_1464249_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143423
NC_017384.1\|WP_013384677.1\|1453731_1455969_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_017384.1\|WP_013384690.1\|1468998_1469877_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|131350
NC_017384.1\|WP_013384682.1\|1460471_1461506_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_017384.1\|WP_013384675.1\|1450636_1451542_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_017384.1\|WP_014537828.1\|1471050_1472013_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NC_017384.1\|WP_044008052.1\|1472349_1473261_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200601
NC_017384.1\|WP_013384681.1\|1459830_1460475_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_017384.1\|WP_013384678.1\|1456350_1457115_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_017384.1\|WP_060486309.1\|1470034_1470799_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130

Protein	Function_ID	Function_description	E-value
NC_017384.1\|WP_193365312.1\|1449899_1450565_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	gnl\|CDD\|181735	PRK09262, PRK09262, hypothetical protein; Provisional.	2.11351e-68
NC_017384.1\|WP_013384688.1\|1466633_1467509_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.61552e-58
NC_017384.1\|WP_013384680.1\|1458877_1459828_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.38636e-150
NC_017384.1\|WP_013384676.1\|1451581_1453321_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|199835	cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase). This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.	7.77213e-123
NC_017384.1\|WP_013384679.1\|1457111_1458881_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_017384.1\|WP_013384685.1\|1464276_1464993_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.24368e-106
NC_017384.1\|WP_013384687.1\|1465710_1466637_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	1.9332e-49
NC_017384.1\|WP_013384686.1\|1464985_1465714_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213186	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system. The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).	2.65794e-100
NC_017384.1\|WP_013384683.1\|1461510_1461801_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.2587e-33
NC_017384.1\|WP_013384689.1\|1467608_1468832_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380561	cd06338, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.	2.78488e-101
NC_017384.1\|WP_013384684.1\|1462797_1464249_-\|aldehyde-dehydrogenase	gnl\|CDD\|143423	cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.	0
NC_017384.1\|WP_013384677.1\|1453731_1455969_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.32374e-51
NC_017384.1\|WP_013384690.1\|1468998_1469877_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|131350	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.	2.13957e-28
NC_017384.1\|WP_013384682.1\|1460471_1461506_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_017384.1\|WP_013384675.1\|1450636_1451542_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.14263e-37
NC_017384.1\|WP_014537828.1\|1471050_1472013_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.28262e-90
NC_017384.1\|WP_044008052.1\|1472349_1473261_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200601	cd10979, CE4_PuuE_like, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases. The family includes a group of uncharacterized prokaryotic polysaccharide deacetylases (DCAs) that show high sequence similarity to the catalytic domain of bacterial PuuE (purine utilization E) allantoinases. PuuE allantoinase specifically catalyzes the hydrolysis of (S)-allantoin into allantoic acid. It functions as a homotetramer. Its monomer is composed of a 7-stranded barrel with detectable sequence similarity to the 6-stranded barrel NodB homology domain of DCA-like proteins in the CE4 superfamily, which removes N-linked or O-linked acetyl groups from cell wall polysaccharides. PuuE allantoinase appears to be metal-independent and acts on a small substrate molecule, which is distinct from the common feature of DCAs which are normally metal ion dependent and recognize multimeric substrates.	5.44202e-120
NC_017384.1\|WP_013384681.1\|1459830_1460475_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.6673e-40
NC_017384.1\|WP_013384678.1\|1456350_1457115_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	6.53478e-97
NC_017384.1\|WP_060486309.1\|1470034_1470799_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	1.02136e-14

>NC_017384.1|WP_013384683.1|1461510_1461801_+|CRISPR-associated-endonuclease-Cas2
MLVLVTYDVNTLSDGGKKRLRQVARACEDWGQRVQFSVFEIELDPAQWTKLRARLESIIDAKTDSLRYYFLGTNWERRIEHVGAKPAKDLNGPLII
>NC_017384.1|WP_013384682.1|1460471_1461506_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTVYVTTEGAALKKDGENLVAEIEGSEKARVPLHMVASVVTFGPIFVSPALIGTCAERGITIALMDRIGRFQARIEGPVSGNVLLRRAQYRTADDAVDVVRSIVLGKLANQRAVIRRGLRDYGDEMAAPVRDALERASDRIEMILRRVQVKDDSIDLLRGAEGEAATLYFGVFNHLIRSPDATLHWTGRSRRPPLDPMNALLSFLYTLLTHDCRSACEAVGLDPAVGFLHRDRPGRPSLALDLMEELRAPLADRLALSLVNRRQLRAGDFRQMDNGAVLLTDEARKTVLTAWQERKKEERLHPFLNEKAPFGLVPYLQAQMLARHLRGDIEAYPPWFWS
>NC_017384.1|WP_013384681.1|1459830_1460475_+|CRISPR-associated-protein-Cas4
MGAEEDAIPLSALQHAVYCLRQAALIHLERLWVANRFTAEGDVLHAVADKGGARRARGVRRVMSLPLASARLNLIGTADLVEFIPGPAGEVAFPVEYKRGKPKLHRADEVQLCAQALCLEEMTGQPVPEGALFYAHTKRRVTVPFDTELRALTQNAAQSLADILASRITPAPTAHKSRCRACSLHEACRPETYARPVLAWRDQMLARSLKDISE
>NC_017384.1|WP_013384680.1|1458877_1459828_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTTLSRRHDFVLIFDVTNGNPNGDPDAGNQPRLDPETGHGLVSDVSLKRKIRNYVELAHEGKDGHHIYVQEGAILNEKHRAAYIAKRPGDEKAKTDKKLNPKDDAEAKELRDWMCANFFDVRTFGAVMSTGINCGQVKGPVQMTFATSVERILPAEITITRMAATNEAEKKKAEEGSDGDQRTENRTMGRKHIVPYGLYVAHGFVSAKFAERTGFSEADLDLLLEALKNAFEHDRSAARGEMATRKLIVFKHENALGNAPAHELFDRVRIGRNLAGEFRPIGDSRLDNQPPARKFGDYLIEIDREALPAGVDIIEL
>NC_017384.1|WP_013384679.1|1457111_1458881_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSVLSSLSRAYERLPDAPPYGFSSEKIGFCIVLNADGSVHDVIDKRQDDKKRSPAMLLVPQAVKRTAGIAPNFLWDKTAYVLGVTAGEGKRTADEHAKFREMHVQWLAGTQDEGLLALLRFLDAWTADRFTAPVWPEDMRDQNIVFALASEYRERYIHERSGAKEIWQRLGTEGASDPQICLVSGDPAPIARLHPSIKGVWGAQTAGASLVSFNLDAFTSYGHEQGDNAPVSEVATFQYTTALNRFLEKDSGHRLQIGDASTVFWADASGLISEMAESLFAGMFDTPEAAHDDDSIETKKIAAKLERIRRGERLDEVEPQLTQGVRFHVLSLAPNAARLSVRFYWENDFAQLTRNYQAYLEDTKIEPPPRDGWPPLWRYLVELAVLNKRENIPPNLAGEWTRAILTRTPYPMTLLATALMRIRSDGEVNALRAAVLKSVLVRNFNKEAPVALNPTFSDSKGYLLGRLFAAYEEVQREALGRNVNATIKDKFYGAASASPQKVFATLDSGAQNHFTKLRKINAGRAVNLDQLIMSIMDQMSPDKDPIPAFLNAPEQGLFGLGYYHQRSDFFRKRDTKTDSVTETQPETTA
>NC_017384.1|WP_013384678.1|1456350_1457115_+|type-I-C-CRISPR-associated-protein-Cas5
MTYGIRLHIWGTHGLFTRPELKVERASYDVITPSAARGILEAIHWKPAIRWIVDRIHVLEPIRFQSIRRNEVGHKAPAGKIRAAMNRGDLADLQILVDQDRQQRASNVLVAPAYVIEAHFDLTAKAGPDDTVGKHLDIFNRRAAKGQCFNQPSLGTREFVAHFALVPPDAVIPSPDGHSWGAMLHAGQTNGAPRPSRAPEAETSDLGFGTPRDLGFMLWDIDHMAPGRPSMFFRATLRDGIVEIPAPGSPDIKR
>NC_017384.1|WP_013384677.1|1453731_1455969_+|CRISPR-associated-helicase/endonuclease-Cas3
MSENRIYAHSGKHADRSDWQLLSDHHDAVSALANARGVKIGLPLAASLAGALHDFGKNDPAFDQVLQGRDIRVDHSTAGGWLALKQAAPKDQPTAEAIAYTILGHHAGLPDKLNDQNSCMTARIETFNRTTNPIPQNLIAQEPPDFAPISHELFAKCAGPNPAFNLSLATRMVFSCLVDADFRDTESYYAKIDAYDRPRDWPSLPDLLPDLRERFDNHMNRLPDTGDVNPIRRHILHHVRAQASQRPGLFTLSVPTGGGKTLASMGFALDHAMAHGHRRIIYAIPYSSVTEQTAGTFRDLFGDVVLEHHAAIDANERDAGQREKLQLAMEDWAAPIVVTTNVQLFESLFSARPSRARKLHNIAGAVIILDEAQCLPRHLLLPTLRMIESLCTHYGCTVVLCTATQPAFDSRQLKEGGLALDDRELAPQPELLAQQLRRAHIRQGGEMSDQDLIDALAGTEQGFVIVNSRAHALELFKAAEQADIKGLVHLTTRQYPSDRRALIAEIREKLKSNQPCRLIATSLIEAGVDLDFPVGWRAEAGLDSCVQAAGRVNREGRRPLAGSILTVFSASDRPMPAAIKTLADAMRSTARRFDDLLNPAAMRDWFEHVYWQAGPKLLDAADIIGKLRVGRGGTDFAFRTIAEAYRMIDTTMVPVIIPGDAIAQREIDRLEVEAVSSGTLARALQHYTVQIPEKSREALRTNGKGDFAAQHLRGAQFFVLTDASLYRRDSGLWWEGADYIADSIW
>NC_017384.1|WP_013384676.1|1451581_1453321_-|PQQ-binding-like-beta-propeller-repeat-protein
MNPTTLLRTSAAVLLLTAPAAFAQVTPITDELLANPPAGEWINYGRNQENYRHSPLTQITADNVGQLQLVWARGMEAGAVQVTPMIHDGVMYLANPGDVIQALDAQTGDLIWEHRRQLPAVATLNAQGDRKRGVALYGTSLYFSSWDNHLIALDMETGQVVFDVERGSGEDGLTSNTTGPIVANGVIVAGSTCQYSPYGCFISGHDSATGEELWRNHFIPQPGEEGDETWGNDFEARWMTGVWGQITYDPVTNLVFYGSTGVGPASETQRGTPGGTLYGTNTRFAVRPDTGEIVWRHQTLPRDNWDQECTFEMMVANVDVQPSAEMEGLRAINPNAATGERRVLTGAPCKTGTMWSFDAASGEFLWARDTNYTNMIASIDETGLVTVNEDAVLKELDVEYDVCPTFLGGRDWSSAALNPDTGIYFLPLNNACYDIMAVDQEFSALDVYNTSATAKLAPGFENMGRIDAIDISTGRTLWSAERPAANYSPVLSTAGGVVFNGGTDRYFRALSQETGETLWQARLATVATGQAISYELDGVQYIAIGAGGLTYGTQLNAPLAEAIDSTSVGNAIYVFALPQ
>NC_017384.1|WP_013384675.1|1450636_1451542_+|LysR-family-transcriptional-regulator
MLDIRRLRYFKVIAECGSMAAAARQLNIAQPALSGHIAQIEEHYALQLFQRHARGVTLTPAGEALLRHARRILENLSEAEAELRHLSPVTTRAPVRLGLLPSWGASLAPAIIQATQLALPDIALRIVEMRHDESLDAIRQQNIDLAVVLEDTAPAQTQLLGSEALLYVSHVAVADRMSFRDVAALPLILPSAANLLRHQLDKAAKAAHVVLGPVMEIDGQDTIKSAVKAGVAGSIMSWNSIRNECLDHSLSACLIDDPEITRNVYLRRGEHVPANLAEAFFVVLRQVAEDNSYSRLRHART
>NC_017384.1|WP_193365312.1|1449899_1450565_+|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase
MAHVRRSFTRPSPEAIDAIRPYSPATVHEAQGKLGALDSRIKPLRHGWQICGSAITAQCHIGDNLMIFEAINLAKPGDVLVLSAGNNPEQGGFGDVLAAACRGKGIAGLIIDAGVRDGRGLRAGDFPVFSLGLCVKGTSKDTLGTVNMPVMVGNQLITPGDIIVADDDGVVVVRQEPFALAKACEAREASEAKLIEMHLSGRMEIEDRYDMMRAKGCVWED
>NC_017384.1|WP_013384684.1|1462797_1464249_-|aldehyde-dehydrogenase
MDLLGLLINNETLPASGGKTFTRKNPISGEVATEAAAATTDDAQRAADAAAAAFPEWSRSSPKTRRTVLLKAADMLEANGPQFVAAMGAEIGATAGWAMFNVTLAADMLREAASLVTQIKGEIIPSNRPGSTAMAVRQPAGVVLAMAPWNAPVILGVRALATPLACGNTVVMKTSELCPRTHHLIVSSLLQAGLPAGVLNAVSNAPEDAAEIVEALIAHPAVRRVNFTGSTRVGRIIAEKAGRYLKPALLELGGKAPFVVLDDADLDEAVAAAAFGAYMNQGQICMSTERIVVMESVADAFVEKLAVKARTLIAGDPREGKTPLGSVVDVSAAQRIEQLIKDATSKGAVLAAGGRIDGTLMDAALLDHVSPAMRIYGEESFGPVVTVVRVGSIDEAVRVANDTEYGLSSAVFGGDVNRALAVARRIESGICHVNGPTVHDEAQMPFGGTKASGYGRFGGNWGIHEFTELRWITVQDGHIHYPI
>NC_017384.1|WP_013384685.1|1464276_1464993_-|ABC-transporter-ATP-binding-protein
MLKIANLSLRYGRHLALQCVNVAVARGETVVILGANGAGKSSALKAVGGIVRPDAGSVVTLDDVPLLGAPAHQIVDRGLALVPEGRGVFADLTVAENLLLGANPKRARAGEGARRDFVYTLFPRLAERRRQTVRTMSGGEQQMVAIGRALMSNPDYLLLDEPSLGLAPIVVAELFAALRRVKETGVAILLVEQNVALSLSLADRGYLMEAGRIVGEGTADTLRNDPAVQNAFLGGSAA
>NC_017384.1|WP_013384686.1|1464985_1465714_-|ABC-transporter-ATP-binding-protein
MTVLLQVDGLKKQFGGLMAVNDLSFTVAEGEILALLGPNGSGKTTVMNLISGALPATAGRIQLDGVQISGLPAHRIARLGVARTFQLVRILPSLTVAENVIAALAFRAQPLWGDDAARAAEALLAEVGLAGRGGEYAADLTYIDQKRMELARALGAAPKLLLLDEWLSGLNPTELRVGIALILSLKARGMTIMLVEHIMEAVRALCPRTVVMNAGRKIADGPTNDVLADPAVVAAYLGGVDA
>NC_017384.1|WP_013384687.1|1465710_1466637_-|branched-chain-amino-acid-ABC-transporter-permease
MSARTLTGLGLAALALVMLAWLPSQLDAYGVGLLLGMTGYVTLATAWALFSGPTRYISLATVAFFGIGAYTVAVLSEAMPYPMVLITAALVGGAVALVVGLATLRLAGVYFVIFSFGLAELVRQLVTWYEVNVTGTLGRYIFLPITAQQIYWQLLALCALTFLIGWLIARSRLGLALRVIGDDEAVAAHTGINIAGAKLALFVISATLITLVGAIQAPRWTYVEPAMVFNPTTSFLTVIMALLGGAHRLWGPILGAIPLFLLFEWLSANFPNHYAIILGLLFITIVFLVPKGVLALVESAFARRRRLQ
>NC_017384.1|WP_013384688.1|1466633_1467509_-|branched-chain-amino-acid-ABC-transporter-permease
MLLTALISGLVLGGTYALVAMGLTLQYGISRIMNLAYGEFVIFAAFCAFVLFTAYGISPLVGMLLVLPAAFVVGYVLYGVMMQPLVKRSGKTGALDVDAILATFGLMFVVQGVMLVTFGANYTSYSYMNFGVNILGASIAANRLLAFVLAVVIGGALYMVLARTRWGTAIRAVAVAPEAAPLVGINVNHMARLAFALGMVLAAAGGIMISMYQTFNASMGVVFAMKALIIVIMGGQGNLLGALVAGLMLGLVETFVATYIDPGLTLAATYAIFLAVLLWRPSGLFGKGGRA
>NC_017384.1|WP_013384689.1|1467608_1468832_-|amino-acid-ABC-transporter-substrate-binding-protein
MIMFSRRLALRSFGATIAVAAAMTGFSASAQQTSIKIGYAVSLTGGNAGGAGITTLPNYRLWVSEVNAAGGLELPDGTRLPIEVVEYDDRSSTEEVVRAIERLATQDQVDFILSPWGTGFNLAVAPLLDRFGYPQLASASVTDRADEFAQRWPRSFWLLGGGADYAGGLADVLATATASGVMNGDVAIISVADGFGIDLINAARPAFAAAGLNIVMDRTYPPGTTDFSPMLNEAKSSSATAFVAFSYPPDTFALTQQAQVADYNPAVFYLGVGAPFPTYLGANGANAEGVMSLGGIDTSNAAMMDYRARHEAFAGQPPDSWASMITYAGLEILQEAIKRAGLDRDAVSAEIASGSFTTILGETQLQNNQLRDLWLTGQWQDGTFVAIEPTDRPGASAAIVPKQPWAN
>NC_017384.1|WP_013384690.1|1468998_1469877_+|helix-turn-helix-domain-containing-protein
MTLRPTHSHLDMLQEVAAQVIATTLDTAAWRMLGRRNRIFVLSAGTGSITYKGESHLLAAPGLVWVPAGAPAQLSLDAGSKGAWLAISDRAILQVDLAGNIAEDMRRFAQRPQFGRKISREMAARLIGLMALMAEELQRSEAGMQEMIRHHLSILAILLWRGSDLRPIAARPAPRVIFSEFLRLVDQHMRAHWRVSDYARYLGVSIDRLTSTVQRDTGQPPLAIIHTRLHAEACQMLETSAMQIAEISASLGFPDPAYFSRFFKRISGYSPRDYRNGLYREVTSGQAWAAWP
>NC_017384.1|WP_060486309.1|1470034_1470799_-|MBL-fold-metallo-hydrolase
MQITQVRNATLVVEYANTKFLIDPLFAAQGAFPGFAGSASSQLANPLVPLPIAQEQLIAVDAVIVTHLHEDHWDAAASAALPKDMPLFAQNEEDADKIRNEGFTDVRVLTQQSQFNGIGLCKTGGQHGTDATLDVIPLGEVCGVVFSHPQYATLYIAGDTIWNDHVQTAIDSHQPDAIVLNIGNAVFMGYDPIIMGLEDAVAVHRAAPNAILIASHMEAINHCILSRQTLYDYAKANGFDTRLLIPADGETVSV
>NC_017384.1|WP_014537828.1|1471050_1472013_-|GlxA-family-transcriptional-regulator
MSQNEVLEVGLLIYPGVQMASVLGMTDLFEMANHVNGKDAAKTIRISHWKTTEDDGAPARVFDSFPLAESEPAVLVVPPAFGVPITPEVAQVYAPWLRQRHGGGTALGSVCTGSFLLAETGLLDGRRITTHWTVDAYLRARFPKVALDADQVIVEDGDIMTGGGAMSWIDLGLRIVDRLLGPAIMAETARSLLVDPPHREQRYSSTFAPRLNHGDAAILKVQHWLQATSAKEGDVERLANVAGLEGRTFLRRFKKATGLTTTEYFQRIRVGRAQELLQAGSQSIDQIAWDVGYSDPGAFRKVFTRIIGLSPGDYRKRLRT
>NC_017384.1|WP_044008052.1|1472349_1473261_+|polysaccharide-deacetylase-family-protein
MRSDTGQYRFAPMRGRPRLHWPGNARMAFWVAPNIEHYELDPPVNPNRSPYARVQPDVLNYGWRDYGNRVGFERMARVMADRGIRGSVSLSVAVIEHFPDIIAQCNDLGWEMFSHGVYNTRYFYGMTEDQQRQVIRDSRESLARVGQTLDGWLTPAITPSLATQDLLAEEGVRYTLDYFHDDQPMPVKVRNGRLISVPYSIEMNDVPMVNWQNASPTAMLDSLKAQFDRLYAEGAGNPNVMCFATHPFLLGQPHRISVLTEFLDYVKSHDQVWYPTAREIADYYYTHHYDRVNTWLASLEESA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017384_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017384_2

1749281-1749380

Orphan

Consensus_repeat	Method
GGACGAGGGCAAAGCCGCCTTCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017384_2

>merge|NC_017384|2|1749281-1749380|CRISPRCasFinder
GGACGAGGGCAAAGCCGCCTTCCGTTGGTATACGGAACTGAACACCGCGCAGCATGTGGGCGCGCCCGGCTTTATGGACGAGGGCCAAGCCGCCTTCCGT

>NC_017384|2|2|1749281-1749380|CRISPRCasFinder
GGACGAGGGCAAAGCCGCCTTCCGT	TGGTATACGGAACTGAACACCGCGCAGCATGTGGGCGCGCCCGGCTTTAT
GGACGAGGGCCAAGCCGCCTTCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017384.1\|WP_013384829.1\|1742419_1743259_+\|bifunctional-5,10-methylenetetrahydrofolate-dehydrogenase/5,10-methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|223268
NC_017384.1\|WP_013384832.1\|1743884_1744772_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_017384.1\|WP_013384840.1\|1754228_1755134_+\|ribokinase	unknown	unknown	gnl\|CDD\|238571
NC_017384.1\|WP_013384842.1\|1756493_1757156_-\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NC_017384.1\|WP_044008068.1\|1740787_1741645_+\|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|223268
NC_017384.1\|WP_013384834.1\|1747145_1748354_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_017384.1\|WP_013384841.1\|1755146_1756490_-\|Ktr-system-potassium-transporter-B	unknown	unknown	gnl\|CDD\|273349
NC_017384.1\|WP_013384843.1\|1757270_1757618_-\|pore-forming-ESAT-6-family-protein	unknown	unknown	unknown
NC_017384.1\|WP_013384845.1\|1758869_1759076_-\|hypothetical-protein	unknown	unknown	unknown
NC_017384.1\|WP_162467563.1\|1748340_1748505_+\|hypothetical-protein	unknown	unknown	unknown
NC_017384.1\|WP_013384839.1\|1753170_1754232_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NC_017384.1\|WP_014537901.1\|1738724_1739585_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NC_017384.1\|WP_013384838.1\|1751653_1753171_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|176463
NC_017384.1\|WP_162467564.1\|1757972_1758395_+\|hypothetical-protein	unknown	unknown	unknown
NC_017384.1\|WP_060486272.1\|1741631_1742423_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|131484
NC_017384.1\|WP_013384837.1\|1750801_1751650_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_017384.1\|WP_014537902.1\|1743263_1743878_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NC_017384.1\|WP_013384825.1\|1739640_1740786_+\|hypothetical-protein	unknown	unknown	unknown
NC_017384.1\|WP_013384836.1\|1749869_1750805_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_017384.1\|WP_013384833.1\|1744772_1747127_-\|PIG-L-family-deacetylase	unknown	unknown	gnl\|CDD\|376836

Protein	Function_ID	Function_description	E-value
NC_017384.1\|WP_013384829.1\|1742419_1743259_+\|bifunctional-5,10-methylenetetrahydrofolate-dehydrogenase/5,10-methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|223268	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism].	2.41878e-53
NC_017384.1\|WP_013384832.1\|1743884_1744772_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.02628e-13
NC_017384.1\|WP_013384840.1\|1754228_1755134_+\|ribokinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.42854e-44
NC_017384.1\|WP_013384842.1\|1756493_1757156_-\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	1.46251e-42
NC_017384.1\|WP_044008068.1\|1740787_1741645_+\|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase	gnl\|CDD\|223268	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism].	2.47905e-108
NC_017384.1\|WP_013384834.1\|1747145_1748354_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.23373e-43
NC_017384.1\|WP_013384841.1\|1755146_1756490_-\|Ktr-system-potassium-transporter-B	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.82325e-86
NC_017384.1\|WP_013384839.1\|1753170_1754232_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	4.86062e-177
NC_017384.1\|WP_014537901.1\|1738724_1739585_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.08621e-38
NC_017384.1\|WP_013384833.1\|1744772_1747127_-\|PIG-L-family-deacetylase	gnl\|CDD\|376836	pfam02585, PIG-L, GlcNAc-PI de-N-acetylase. Members of this family are related to PIG-L an N-acetylglucosaminylphosphatidylinositol de-N-acetylase (EC:3.5.1.89) that catalyzes the second step in GPI biosynthesis.	6.03897e-16
NC_017384.1\|WP_060486272.1\|1741631_1742423_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|131484	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions].	2.10587e-56
NC_017384.1\|WP_013384837.1\|1750801_1751650_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	7.79151e-84
NC_017384.1\|WP_014537902.1\|1743263_1743878_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.43447e-05
NC_017384.1\|WP_013384836.1\|1749869_1750805_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.50085e-74
NC_017384.1\|WP_013384838.1\|1751653_1753171_+\|argininosuccinate-lyase	gnl\|CDD\|176463	cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In humans, mutations in ASAL result in the autosomal recessive disorder argininosuccinic aciduria.	2.28477e-155

>NC_017384.1|WP_162467563.1|1748340_1748505_+|hypothetical-protein
MAETIPVSRKYTCPPMARLTNFISPQGPQAEAAFFLDAGRKVKDHKNNSSELSY
>NC_017384.1|WP_013384834.1|1747145_1748354_-|ROK-family-protein
MVSAMTTAEGATEKRKRAIGANPERNRAHNRSLVLNLLREHGQIGRAAMARHTRLTQQAVGNIIDELLLEGMVIETGRLRVGRGQPARQFALNPCGPVSLGVEIAAGHLAIVFQALTGAIRARSIVPLADTAPAPVIAALVAQIEKLKSEAGAPEIIGMGVVMPGPFEIEGISAVGPATLKGWAGLDPAALIADATGIGTVVYENDATAAAVFESLHGVGRGLRDFCHVYFGVGLGLGLIHDGRPLRGAFGNAGEIGQIAVPPRGGGAAAALEDRASVFALRDFLRETRGAPDDLDLLASLDPAEDPALQDWIARAADQLSPVLAILENIFDPETITLGGLMPRPIIEAMIDCLQPLPVTVSSRSARGLPRLMLAQTGPYTAALGAAAMPFMDQNTTATLRQ
>NC_017384.1|WP_013384833.1|1744772_1747127_-|PIG-L-family-deacetylase
MLTDRNRLFRRIADPRMVRLARALGRLGSTVTMMNTGAHPDDEQTELLAWFSFGRNMRVVIACSTRGEGGQNALGPERGAALGLVRSRELEESARVIDADIAWLGHGPVDPVHDFGFSKDGKDTLERWGRARVIDRLVRAYREYRPDIVLPTFLDVPGQHGHHRAMTEAAEAALALAADPTYEVDGLAPWRVAKYYLPAWSGGGSTYDDELPPPPATVDVRVEGFDPVSGMRYDQIGEASRGYHASQGMGTWRATPRRHWALHGTAPEGDILDGLPATLGALADVAGAPAELALAASEIAKARAAFPDDQAMITALVAAHKAFSAPMGADFDALHGHRIRQKIAEVEAALALAAGVDVAAWLQDPLVPGRSATLAVWVNAGHATLRGIAAAASDGIAQKGGSEERDGLHLLTLAVPADLSPASRYLPGWARLGGNGILAASVTVEVGGITFALPVDLEEEPLLQPAASVTPSADAVLVNLNDPQPVHFAMTGTASAASLGLGSIDGLTVENADGHVTLTASGLAPGKTRLPISVAGAAGWQAKPINYGHIGRLAQVVPAGVDILALDLKIPDGRVGYIGGGADRVGLWLERMGVDVVDLDAEAFDAARANGFAGFDTLVVGIFTFGLRPDLAAATADLRAWVHAGGNLVTLYHRPWDNWKPDETTPAHMVVGSPSLRWRVTRPGAPVTILEPDHDLLAGPNTITHADFDGWDKERGLYFLSSWDQVYQPLLAMSDPDEQPLLGSLVTGRIGKGRHTHTALVLHHQMDRLVPGAFRLMANLIQPA
>NC_017384.1|WP_013384832.1|1743884_1744772_-|DMT-family-transporter
MKPATALDDQTSAAEMRQGMTWVLLDMALVSAMTVMVKKGGVDFPAVQMVFFRSLVGLVAVLPLVLRHWRVIRQTRNVKRNVFRVTCNAVALSCNWGALTILPLATANAIGFLRPLIVMVMAIFLLSERVTGWRWAGAALGLMGVGVMLLPSLTGMGEAQDHLLGYAFAGGAILFGAMATIQTRALKGENTTVMMVFYTVGLTLFTAIPAFFVWQPVALHHLPHLLGIGIIAQVAQYCYLRGYQLAPASKLAPLGYLSLIFATVMGYVFFDEVPTVYTAGGAIVIIIGLIVARRA
>NC_017384.1|WP_014537902.1|1743263_1743878_+|nuclear-transport-factor-2-family-protein
MKKLIASFAIAASIAAPVFADTEVRPGVFFAGTVETAGSDRAVMQDLIFDLATAWAVCDRDAMANAITDDVSFSYPTSAVNGREAIMADLEAFCGAATDTSLYFPADAFYIDVDTGRIAAEVQFRTFQRGNRQVVNDVWIATVTDGKVSVIKEYLDGRVKDLQAQGVLQLEESPDFLTPWPPRTEAWASCFPIVRAAPTNDCVQ
>NC_017384.1|WP_013384829.1|1742419_1743259_+|bifunctional-5,10-methylenetetrahydrofolate-dehydrogenase/5,10-methenyltetrahydrofolate-cyclohydrolase
MTTIFTGFDLAADILQGVRADIATLGRAPVCVTLFDDSSAPARAYLNRQITLARGAGIDLRPMGYADAQLAQLAADARVDAIATLYPLPSGLTPMGAAQAIGGGKDIDGQHPNHAGPLLLGDGTLRPAATAQASLICARAILGDLAGAEIVLIGASRLIGRPLAMLLLDAGATVTTCHIQTRDLARHTRAADLVISAAGVPALLTADNIAKGGRILDLAIIPKDGSLVGDADLPSLMGHAALVSAVPDGVGPVTTACLFANIAAAAKSRAMNLPLLQQD
>NC_017384.1|WP_060486272.1|1741631_1742423_+|helix-turn-helix-domain-containing-protein
MPATDENRALFEDDKEISLTLARGLDLIEAFAGDERRLSIPELAARTGMNRTVVRRLVRTLEKKGYASADRGQYELTPHILRLIRGFIEGRSLPQIVHPLLRAAAEDIGESVSFAMLDDTEAVYVAHAFLPARFTLNMVTVGSRAPLLPTAVGRVIVAFLPDIERSAILSRLSPQAHTPQTETDAARLDAIFADCRRLDYCMADGEYVEGVASLAVPVFDGMRRVTGALSIIFPTHGHDATEIAEKLAPRMQATASALGSALQ
>NC_017384.1|WP_044008068.1|1740787_1741645_+|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase
MMALLLDGDALAAKLRQQMTERVAASGIRPVMATVLVGDNPASESYVARKHKDCREIGIEALRIRLPAGASPEQVLAEVARLNDDPSVDGFFVQFPLPEGHDEQAIAAAIRPDKDIDGLHPENLGRLITGKGGIPPCTPMAVLSLLRGYNVPLAGKHVVIIGRGLLVGRPLAMVLSAPGVDASVTLLHSQTPDIAAFTRNADVVIAAAGHPELIRADMIRAGATVVGVGITYGDDGAMVSDIAADVSAIAGAVTPAHGSVGSLTRAMLLQNLINLALEKHSHARN
>NC_017384.1|WP_013384825.1|1739640_1740786_+|hypothetical-protein
MNRILTALTASVAAFAGTTASAGEFATAHYTTPLADVCPSPFYIQKDWLAQAEHGGLYQMIGAGGTMESGAYRGPLGATGIELAILEGGGGIGLGDGETAYSALFNGNSKAGVIPHLGFQELDNAYIFSNLFPVVGVFVPLDIAPSGLIWDTGTYPDGFHSVDDLKAFGESGAGMIYVSTITRTFGLWLVEQGVSRDAFVEGYRGDLENFVANNGTWLNQGFVTTEVFNLSNGMNWAKPVDAVTVNELGYPTITGMVSVAQPRLEELAPCLELLVPIMQQAAVDYINDPAEVNQLIADFTAGGFSASWWRATPELNAYSAAAQRDRGIVGNGNNATIGDFDLDRAAAMLELVKPMLDDRANPDVTVDDVVTNRFINPEIGL
>NC_017384.1|WP_014537901.1|1738724_1739585_+|ABC-transporter-permease-subunit
MTEIAPKIRTEAYAPTPVAPPRTPAQKFAATFLPPLIMGVLVVLLYWVVRESLPAHRQFLMPSASGMWDKALSQPAVWAELGSRSLTTLTIALTGLAFSIPIGMALGIIMFRFFVMERAVYPFLVALQSIPIMAIIPLIQSALGFGFMPKVLIVILFTFFAIPTTLLLGLKSLDQGVLNLFRLQGASWWTMLRKAGLPSSAPALFAGFRISTSMAVIAAVTSELFFMAGRGGLGQMLVNAKTDFKYEQMYAALIASATLSISIFVVFTLVGNRIFASWYETAERKS
>NC_017384.1|WP_013384836.1|1749869_1750805_+|sugar-ABC-transporter-permease
MSVTDPNGAAEGRPGLWNRLGIRTKHVLWAWAFLAIPVLFYVVIRFYPTFDAFWLSLTDGNIRRGPSFIGLENYARMYADPVFWKVFGNTFLYLLIGTPVSLVISFTIAYYLDRVRFMHGLIRALYFLPYLTTAAAMGWVWRFLYQPVPIGMINSFLTSIGLEQQPFLRSTDQALMAATIPAIWAGLGFQIIIFMAGLRAIPSSFYEAARIDGLGEWAILRKITLPLLKPTTIFLVVLSSIGFLRIFDQVQSLTANDPGGPLNATKPLVMLIYQTAFSSFRMGYASAQTVILFLVLLLISLLQLWLLRDKK
>NC_017384.1|WP_013384837.1|1750801_1751650_+|carbohydrate-ABC-transporter-permease
MSASTELAANRRNIRPGRVIAWTLLILGGFLMALPILYMFSTSLKPASDTFDLRLIPAAPTLANYIDILQDGRFIRWFYNSMIIAVAVTASNVFFDSLVGYTLAKFDFRGKNIVFIAILSTLMIPTEMLVIPWYMMSAKLGWLDSHWGIMFPGMMTAFGTFLMKQFFEGVPNDFLEAARVDGLNEFTIWWKIAMPMVLPAISALAIFTFLGNWTAFLWPLISTTSPDLYTLPVGLNSFAVGEAVRWERIMTGAALATIPTLLVFLALQRFIVRGVMLAGLKG
>NC_017384.1|WP_013384838.1|1751653_1753171_+|argininosuccinate-lyase
MSNPNDPRLTDGSVFPDPVYKETVLRPLFDGAKTHHVAAFGAIDRAHLVMLAETGILPAADAGKIAVARAALDTEIDPATLTYTGEVEDYFFLIEKELKARVGAELGGRLHTARSRNDIDHTLFKLGLRARLNLLIEQAIALHGAIVAKAEAESATLIVAYTHGQPAQPSTLGHYLSAMAEILARDIQRLFEAYRIVNLSPMGAAAITTSGFPINRERVAELLGFAAPLQNSYSCIASVDYITSTYSAMELMFLHLGRPIQDLQFWTSFEVGQIYVPNALVQISSIMPQKRNPVPIEHLRHLASQTVGRAHSMLTIMHNTPFTDMNDSEGETQETGYQAFEVAGRVLTLLAALVAQIKVDPARVASNIRRSCITITELADSTVRREGLSFREGHEIAAAVARAVVAAEGDLTTDGYAPFVTAFKHATGRDPQIDAAAFAQITSPEYFVAVRDRTGGPAPEALAQAISGYKTQNAGFAAQLATLIATQSAADADLATAFNLLKESA
>NC_017384.1|WP_013384839.1|1753170_1754232_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MAKIELEGLVKDYGKVRAVHGIDLQIEDGEFVVFVGPSGCGKSTTLRMIAGLEDISGGALKIGGKVVNQLEPKQRNIAMVFQNYAIYPHMTVGQNIAFGLYTSKLPKAEKDRLVREAGETLGLTPYLDRRPAALSGGQRQRVAIGRAMVRSPSAFLFDEPLSNLDAQLRGQMRIEIKRLHQRLGTTIVYVTHDQVEAMTMADKIVVMRDGRILQVGSPLDLYENPVDVFTARFIGSPSMNVIEGESDGVNLRLGNSTLPGFGANLPAGKVMVGLRPHDLKVGVPGDATLEAVVTAIEPLGAETLVHMEVAGQPLVGSAPGRVLPVVGSTVTASVTRGVLYVFDAQTEKALGRA
>NC_017384.1|WP_013384840.1|1754228_1755134_+|ribokinase
MTSKNNGEGVLSLGRIYADLAFAELDAPPTPGREVYAQSFSLTPGGGAVITAAHLVAAGRPAHLLARLGTDPIAVAIASELTALDLDLTYVERAADAGPQLTVAIVTPEDRAFITRRSPRGMPSQAAAALHGAGLRHLHIAEYATLAENPALIVTAKMAGLTISLDPSWDESLIHGPALLAASSGVDVFFPNMDEATALTGKTAPAAALDILAQHFPVVALKCGSAGAMLAVGSTRFSVTAPKTVVVDTIGAGDSFNAGFLDAWLSGLAPEEVLRRAVQRGSQSVMAAGGTGCLSQMKSAS
>NC_017384.1|WP_013384841.1|1755146_1756490_-|Ktr-system-potassium-transporter-B
MKTAVKGWAARFLSLPPPLVVAGIYIATITMGASLMMLPMAQAMPMRWSDAFFMATSAVTVTGLAVVDVGSHLSLLGQAVLVTLVQLGGLGLMTFAVLILEIVGRPVGLMGEAYLREDLKQNALWRVGRLVRRIAVVVFAIEAVGIAILCLSFIPDLGFWPGLWAAIFHGIGAFNNAGFSIFRTGLMEYVADPIVNLVIPALFITGGIGYFVLHDLIYKRRWRYWSLNTRIMLAGTAVLIPWSVLMFAALEWTNPATLGGLDGIWPRIAASWFQGVTPRTAGFNTLDISGIHDSTAMLFISLMLIGGGATSTAGGIKVTTFVVMILATIAFFRRQTQLHIFGRGIGPDEVLKVMAIVAVSLVLVFCGVFLLSLSHDGHFLDIAFEVASAFSTTGLSRNYTPELNDFGRCVIMVIMFIGRLGPLTLGFFLATQLSPRVRYPQERIHIG
>NC_017384.1|WP_013384842.1|1756493_1757156_-|TrkA-family-potassium-uptake-protein
MARTEQSFVVIGLGAFGAAVASELARFGNRVMGIDLDERRVAQMVSVLPTALILDATDEIALREAGVDRYDVALVAIGQNIEASILATMNLRLLGLETVWVKAASRVHHRILVKIGADRVILPEQEMGRHIAQMLNNPVVQDYVSLGNGFNVVSIELPKALDGATPKSLGLVGREEPRLMAAMRGTQQLDIANPDLRFAPNDKLILLGRRVVLQAFSDGL
>NC_017384.1|WP_013384843.1|1757270_1757618_-|pore-forming-ESAT-6-family-protein
MIATSAFAQAPAMPDMDEAVAAANNQLGVLEYCAAEGHIESTAVEVQERLLQVLPPASDPTAVEAAYAAGKEGTIAVSGTEMSLADAATGQGTDVAALCQQLGSMVEQAGASLPN
>NC_017384.1|WP_162467564.1|1757972_1758395_+|hypothetical-protein
MKKLLGLLALCALAACVDADGRHVLGVSDEQQTFSLTLTGQGTDGARCWAEGHEGTSESLNDVFGRPQVRMKGAIQTGHVRCRMADGTTYMSLINQTVGLGWWSNIAMVRYVEGSMFLRATMDVPHGRRIYQSGMIRLPS
>NC_017384.1|WP_013384845.1|1758869_1759076_-|hypothetical-protein
MNTAPFVRIALRYIAGGLVSYGILTPEGATAFASDPQVIAQASIVLGAATAALTEGFYALAKRWGWRT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NC_017903	Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence	24723-24756	6	0.824
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NC_011148	Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence	37052-37085	7	0.794
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	30385-30418	7	0.794
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NZ_CP010193	Escherichia coli strain M8 plasmid B, complete genome	33332-33365	7	0.794
NC_017384_1	1.16\|1462340\|33\|NC_017384\|CRISPRCasFinder,CRT	1462340-1462372	33	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	45464-45496	7	0.788
NC_017384_1	1.5\|1462273\|35\|NC_017384\|PILER-CR	1462273-1462307	35	NC_011148	Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence	37052-37086	8	0.771
NC_017384_1	1.10\|1462612\|35\|NC_017384\|PILER-CR	1462612-1462646	35	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	539756-539790	8	0.771
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NZ_CP049247	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence	18758-18791	8	0.765
NC_017384_1	1.20\|1462606\|34\|NC_017384\|CRISPRCasFinder,CRT	1462606-1462639	34	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	539756-539789	8	0.765
NC_017384_1	1.5\|1462273\|35\|NC_017384\|PILER-CR	1462273-1462307	35	NZ_CP049247	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence	18757-18791	9	0.743
NC_017384_1	1.5\|1462273\|35\|NC_017384\|PILER-CR	1462273-1462307	35	NZ_CP019707	Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence	62089-62123	9	0.743
NC_017384_1	1.6\|1462339\|34\|NC_017384\|PILER-CR	1462339-1462372	34	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	45464-45497	9	0.735
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NZ_CP019707	Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence	62089-62122	9	0.735
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NZ_CP007740	Bacillus methanolicus MGA3 plasmid pBM69, complete sequence	16414-16447	9	0.735
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NZ_LT222315	Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf plasmid p58T3	108477-108510	10	0.706
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NZ_LT963398	Pseudomonas cerasi isolate PL963 plasmid PP3, complete sequence	75521-75554	10	0.706
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	CP034538	Pseudomonas poae strain CAP-2018 plasmid unnamed	107853-107886	10	0.706
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NC_008738	Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01, complete sequence	62733-62766	10	0.706
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NC_007678	Salinibacter ruber DSM 13855 plasmid pSR35, complete sequence	14814-14847	10	0.706
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NZ_AP022559	Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence	821-854	10	0.706
NC_017384_1	1.22\|1462472\|35\|NC_017384\|CRT	1462472-1462506	35	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	984065-984099	10	0.714
NC_017384_1	1.15\|1462274\|34\|NC_017384\|CRISPRCasFinder,CRT	1462274-1462307	34	NZ_CP029542	Streptomyces sp. NEAU-S7GS2 plasmid unnamed1, complete sequence	9497-9530	11	0.676

1. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NC_017903 (Escherichia coli Xuzhou21 plasmid pO157_Sal, complete sequence) position: , mismatch: 6, identity: 0.824

tcccata-aaaaaacccgcctctaagggcgggctg	CRISPR spacer
-gcgacacaaaaaacccgcctctaagggcgggtta	Protospacer
  * *.* ************************.*.

2. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NC_011148 (Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence) position: , mismatch: 7, identity: 0.794

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
cgacacaaaaaaacccgcctctaaggacgggtta	Protospacer
.  **.********************.****.*.

3. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 7, identity: 0.794

-tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
gcttcat-aaaaaacccgcctctaaaggcgggtta	Protospacer
 ...*** *****************.******.*.

4. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_CP010193 (Escherichia coli strain M8 plasmid B, complete genome) position: , mismatch: 7, identity: 0.794

-tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
gcttcat-aaaaaacccgcctctaaaggcgggtta	Protospacer
 ...*** *****************.******.*.

5. spacer 1.16|1462340|33|NC_017384|CRISPRCasFinder,CRT matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 7, identity: 0.788

tgcttccg--gtaaaactccaccgcagcgtggaac	CRISPR spacer
--ccgccgacgtgaaacaccaccgcagcgtggaag	Protospacer
  *. ***  **.**** ****************

6. spacer 1.5|1462273|35|NC_017384|PILER-CR matches to NC_011148 (Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid, complete sequence) position: , mismatch: 8, identity: 0.771

ctcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
gcgacacaaaaaaacccgcctctaaggacgggtta	Protospacer
 .  **.********************.****.*.

7. spacer 1.10|1462612|35|NC_017384|PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.771

ccccagcaggcgcggcgcagacgacaggcgggacg	CRISPR spacer
catcgacgggcgcggcgcagacgacaggcaagacc	Protospacer
* .*..*.*********************..***

8. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_CP049247 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
gggcaacaaaaaacccgcctcgaggggcgggctt	Protospacer
   **  ************** *.*********

9. spacer 1.20|1462606|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagcaggcgcggcgcagacgacaggcgggacg	CRISPR spacer
atcgacgggcgcggcgcagacgacaggcaagacc	Protospacer
 .*..*.*********************..***

10. spacer 1.5|1462273|35|NC_017384|PILER-CR matches to NZ_CP049247 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

ctcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
tgggcaacaaaaaacccgcctcgaggggcgggctt	Protospacer
.   **  ************** *.*********

11. spacer 1.5|1462273|35|NC_017384|PILER-CR matches to NZ_CP019707 (Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence) position: , mismatch: 9, identity: 0.743

ctcccataa-----aaaaacccgcctctaagggcgggctg	CRISPR spacer
-----aaaaggcttaaaaaaccgcctctaagggcggtctt	Protospacer
     * **     ***** **************** **

12. spacer 1.6|1462339|34|NC_017384|PILER-CR matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcttccg-----gtaaaactccaccgcagcgtggaac	CRISPR spacer
-----cccgccgacgtgaaacaccaccgcagcgtggaag	Protospacer
     .***     **.**** ****************

13. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_CP019707 (Pantoea alhagi strain LTYR-11Z plasmid pPALTYR11Z, complete sequence) position: , mismatch: 9, identity: 0.735

tcccataa------aaaaacccgcctctaagggcgggctg	CRISPR spacer
------aaaggcttaaaaaaccgcctctaagggcggtctt	Protospacer
      **      ***** **************** **

14. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_CP007740 (Bacillus methanolicus MGA3 plasmid pBM69, complete sequence) position: , mismatch: 9, identity: 0.735

tcccataaaaaaacccgcctctaagg-gcgggctg	CRISPR spacer
aaccataaaaatacccccctctaaggtgtttgtt-	Protospacer
  ********* **** ********* *.  *.*

15. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_LT222315 (Pseudomonas cerasi isolate Sour cherry (Prunus cerasus) symptomatic leaf plasmid p58T3) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
caaaacgaaaaaacccgcctattagggcgggttt	Protospacer
.   *..************* * ********.*

16. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_LT963398 (Pseudomonas cerasi isolate PL963 plasmid PP3, complete sequence) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
caaaacgaaaaaacccgcctattagggcgggttt	Protospacer
.   *..************* * ********.*

17. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to CP034538 (Pseudomonas poae strain CAP-2018 plasmid unnamed) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
acttcacaaaaaacccgcctttaatggcgggttt	Protospacer
 *..   *************.*** ******.*

18. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NC_008738 (Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01, complete sequence) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
agaaaacaaaaaacccgcctcaatgggcgggttt	Protospacer
    *  ************** * *******.*

19. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NC_007678 (Salinibacter ruber DSM 13855 plasmid pSR35, complete sequence) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
agtcagtaaaaaacccgcctttacgggcggggca	Protospacer
  .**  *************.** ******* ..

20. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_AP022559 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence) position: , mismatch: 10, identity: 0.706

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
gaaaaataaaaaacccgcctcaaaaggcggggtc	Protospacer
    *  ************** **.****** *

21. spacer 1.22|1462472|35|NC_017384|CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.714

gcgaccaatggcgcgtagcgacaccctatcaggac	CRISPR spacer
acgacgaatggcgcgtcgcgacacccatctgcaac	Protospacer
.**** ********** *********  ... .**

22. spacer 1.15|1462274|34|NC_017384|CRISPRCasFinder,CRT matches to NZ_CP029542 (Streptomyces sp. NEAU-S7GS2 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

tcccataaaaaaacccgcctctaagggcgggctg	CRISPR spacer
cgtaacgaaaaaacccgcctcggagggcgggact	Protospacer
. . *..************** .******** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

175167 : 183561

Synechococcus_phage(50.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_193365330.1\|175167_177330_-	RelA/SpoT family protein	A0A291L9W9	Bordetella_phage	3.1e-12	38.0
WP_013383421.1\|177484_177838_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_013383422.1\|178259_178850_+	NYN domain-containing protein	NA	NA	NA	NA
WP_014537458.1\|178925_179876_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_013383423.1\|179877_180342_+	ribonuclease HI	J9Q745	Salmonella_phage	1.6e-35	52.1
WP_013383424.1\|180402_181287_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	9.0e-11	37.3
WP_013383425.1\|181283_181655_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_013383426.1\|181651_182548_-\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	2.1e-07	31.0
WP_013383427.1\|182547_183039_-	peptide deformylase	K4JRM9	Caulobacter_phage	1.1e-13	36.4
WP_013383428.1\|183039_183561_-	peptide deformylase	E3SLL2	Synechococcus_phage	3.4e-26	47.9

DBSCAN-SWA_2

696004 : 707603

Paracoccus_phage(37.5%)

tail,protease,head,portal,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013383945.1\|696004_697168_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	7.6e-58	38.8
WP_013383946.1\|697154_697376_+	hypothetical protein	NA	NA	NA	NA
WP_013383947.1\|697376_697904_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.3e-29	53.7
WP_013383948.1\|697912_699043_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	8.1e-65	38.8
WP_014537610.1\|699107_699632_+	hypothetical protein	NA	NA	NA	NA
WP_013383951.1\|699628_699961_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_014537611.1\|699957_700344_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013383953.1\|700355_700772_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_013383954.1\|700768_701086_+	gene transfer agent family protein	NA	NA	NA	NA
WP_013383955.1\|701090_701291_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_013383956.1\|701283_701895_+\|tail	phage tail tape measure protein	E7EKW4	Edwardsiella_phage	4.9e-08	55.9
WP_013383957.1\|701907_702540_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	2.6e-52	47.1
WP_013383958.1\|702536_703382_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	1.7e-46	38.8
WP_013383959.1\|703378_703792_+	peptidase P60	F4YXU4	Roseobacter_phage	3.3e-16	34.1
WP_013383960.1\|703793_707603_+	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0K1LL82	Rhodobacter_phage	4.1e-201	38.0

DBSCAN-SWA_3

752663 : 774711

Rhodobacter_phage(22.22%)

tail,protease,portal,integrase,terminase,capsid

attL 746480:746496|attR 774902:774918

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
746480:746496	attL	NA	NA	NA	NA
WP_013384001.1\|752663_753749_-\|integrase	tyrosine-type recombinase/integrase	H6WBN7	Rhodobacter_phage	3.2e-87	51.4
WP_013384002.1\|753928_754177_-	hypothetical protein	NA	NA	NA	NA
WP_013384003.1\|754817_755210_-	hypothetical protein	NA	NA	NA	NA
WP_014537624.1\|755206_755812_-	hypothetical protein	NA	NA	NA	NA
WP_014537625.1\|755811_756303_-	hypothetical protein	NA	NA	NA	NA
WP_014537626.1\|756338_756485_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_013384006.1\|756497_756710_-	hypothetical protein	NA	NA	NA	NA
WP_044008018.1\|756978_757596_+	hypothetical protein	NA	NA	NA	NA
WP_014537628.1\|757736_758372_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013384009.1\|758746_759037_+	hypothetical protein	A0A1X9HW32	Ruegeria_phage	2.5e-26	62.4
WP_014537630.1\|759033_759180_+	hypothetical protein	NA	NA	NA	NA
WP_044008019.1\|759221_759818_+	hypothetical protein	NA	NA	NA	NA
WP_013384010.1\|759814_760102_+	DUF2312 domain-containing protein	A0A1X9HX62	Ruegeria_phage	6.4e-19	50.5
WP_060486302.1\|760194_760731_+	hypothetical protein	NA	NA	NA	NA
WP_013384014.1\|761016_761553_+	hypothetical protein	NA	NA	NA	NA
WP_013384015.1\|761549_762197_+	hypothetical protein	NA	NA	NA	NA
WP_013384016.1\|762648_762846_-	CsbD family protein	NA	NA	NA	NA
WP_013384017.1\|762997_763759_+	hypothetical protein	NA	NA	NA	NA
WP_162491175.1\|763863_764550_+	DUF1441 family protein	A0A0K1Y6X7	Rhodobacter_phage	6.1e-23	36.1
WP_014537634.1\|764546_764726_-	hypothetical protein	NA	NA	NA	NA
WP_013384020.1\|764870_767024_+\|terminase	phage terminase large subunit family protein	S5MDQ1	Escherichia_phage	6.6e-116	35.3
WP_013384021.1\|767020_767215_+	hypothetical protein	NA	NA	NA	NA
WP_013384022.1\|767216_768728_+\|portal	phage portal protein	Q75QM9	Wolbachia_phage	8.9e-67	34.7
WP_014537635.1\|768720_770853_+\|protease	Clp protease ClpP	A0A0A8IKZ4	Aurantimonas_phage	6.5e-31	40.0
WP_013384024.1\|770931_771276_+	DUF2190 family protein	NA	NA	NA	NA
WP_014537636.1\|771279_771609_+	hypothetical protein	NA	NA	NA	NA
WP_013384026.1\|771601_772042_+	hypothetical protein	NA	NA	NA	NA
WP_013384027.1\|772054_772483_+\|capsid	phage capsid protein	A0A0U2BX03	Paracoccus_phage	3.4e-24	46.2
WP_044008021.1\|772482_772878_+	gene transfer agent family protein	NA	NA	NA	NA
WP_013384028.1\|772973_773240_+	hypothetical protein	NA	NA	NA	NA
WP_014537637.1\|773214_774711_+\|tail	tail tape measure protein	A0A0U2BXT9	Paracoccus_phage	3.7e-09	44.6
774902:774918	attR	NA	NA	NA	NA

DBSCAN-SWA_4

898310 : 905523

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044008153.1\|898310_898979_+	guanylate kinase	A0A143DIC6	Abalone_herpesvirus	7.5e-18	33.3
WP_013384143.1\|899025_900060_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	4.7e-27	31.1
WP_013384144.1\|900162_900762_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.9e-33	40.4
WP_014537686.1\|900824_901718_+	EamA family transporter RarD	NA	NA	NA	NA
WP_044008154.1\|901702_902257_-	TIGR00730 family Rossman fold protein	A0A2I2L3F0	Orpheovirus	1.3e-12	30.8
WP_014537688.1\|902406_903633_+	LysM peptidoglycan-binding domain-containing protein	A0A0A7RVP5	Clostridium_phage	8.4e-07	44.2
WP_193365337.1\|903717_905523_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	3.5e-38	27.6

DBSCAN-SWA_5

1677675 : 1695440

Paracoccus_phage(27.27%)

tail,protease,head,portal,terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013384758.1\|1677675_1678101_-\|tail	phage tail assembly chaperone	M1PRG4	Prochlorococcus_phage	1.3e-07	46.7
WP_013384759.1\|1678103_1681610_-	hypothetical protein	A0A0U2C146	Paracoccus_phage	3.6e-87	34.1
WP_013384760.1\|1681611_1682040_-	hypothetical protein	A0A0U2C0Z1	Paracoccus_phage	2.1e-18	39.6
WP_013384761.1\|1682018_1682639_-	hypothetical protein	NA	NA	NA	NA
WP_013384762.1\|1682733_1683063_+	hypothetical protein	NA	NA	NA	NA
WP_013384763.1\|1683063_1683714_-	hypothetical protein	NA	NA	NA	NA
WP_013384764.1\|1683710_1686752_-\|tail	phage tail tape measure protein	A0A2D0W9N5	Bordetella_phage	9.5e-44	39.2
WP_013384765.1\|1686748_1686895_-	hypothetical protein	NA	NA	NA	NA
WP_013384766.1\|1686927_1687311_-	gene transfer agent family protein	A0A141GEX0	Brucella_phage	9.9e-07	33.3
WP_013384767.1\|1687310_1687769_-	hypothetical protein	NA	NA	NA	NA
WP_013384768.1\|1687999_1688410_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013384769.1\|1688409_1688805_-	hypothetical protein	NA	NA	NA	NA
WP_013384770.1\|1688818_1689166_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_013384771.1\|1689162_1689690_-\|head,tail	phage gp6-like head-tail connector protein	A0A141GEW4	Brucella_phage	5.0e-09	26.5
WP_013384772.1\|1689740_1690919_-\|capsid	phage major capsid protein	Q6JIM7	Burkholderia_virus	5.7e-53	35.7
WP_013384773.1\|1690941_1691595_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.3e-34	42.7
WP_014537879.1\|1691604_1692765_-\|portal	phage portal protein	B4UTP1	Rhizobium_phage	3.4e-10	24.5
WP_013384775.1\|1692761_1694543_-\|terminase	phage terminase large subunit	B0VK29	Azospirillum_phage	1.0e-138	44.3
WP_014537880.1\|1694505_1694916_-	hypothetical protein	NA	NA	NA	NA
WP_060486270.1\|1695050_1695440_-	HNH endonuclease	A0A286N2R3	Klebsiella_phage	4.5e-07	35.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017384

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection