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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_015975 Lactobacillus ruminis ATCC 27782, complete sequence 5 crisprs DinG,cas3,DEDDh,cas14j,cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,cas4,cas5,cas7,cas8b2,Cas14u_CAS-V,csa3,WYL 3 1 7 0

Results visualization

1. NC_015975
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015975_1 172571-172763 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015975_2 1047155-1048214 TypeIII NA
14 spacers
cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas1,cas2,DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015975_3 1066225-1068633 Unclear NA
36 spacers
DEDDh,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015975_4 1717458-1717652 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_015975_5 1904738-1904849 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_015975_3 3.16|1067247|35|NC_015975|CRISPRCasFinder,CRT 1067247-1067281 35 NC_015975.1 248969-249003 0 1.0
NC_015975_3 3.51|1067247|36|NC_015975|PILER-CR 1067247-1067282 36 NC_015975.1 248969-249004 0 1.0
NC_015975_3 3.51|1067247|36|NC_015975|PILER-CR 1067247-1067282 36 NC_015975.1 527632-527667 1 0.972
NC_015975_3 3.51|1067247|36|NC_015975|PILER-CR 1067247-1067282 36 NC_015975.1 733166-733201 1 0.972
NC_015975_5 5.1|1904777|34|NC_015975|CRISPRCasFinder 1904777-1904810 34 NC_015975.1 1804589-1804622 2 0.941

1. spacer 3.16|1067247|35|NC_015975|CRISPRCasFinder,CRT matches to position: 248969-249003, mismatch: 0, identity: 1.0

cgttaggatatgggaataccagcgttgacggcaac	CRISPR spacer
cgttaggatatgggaataccagcgttgacggcaac	Protospacer
***********************************

2. spacer 3.51|1067247|36|NC_015975|PILER-CR matches to position: 248969-249004, mismatch: 0, identity: 1.0

cgttaggatatgggaataccagcgttgacggcaaca	CRISPR spacer
cgttaggatatgggaataccagcgttgacggcaaca	Protospacer
************************************

3. spacer 3.51|1067247|36|NC_015975|PILER-CR matches to position: 527632-527667, mismatch: 1, identity: 0.972

cgttaggatatgggaataccagcgttgacggcaaca	CRISPR spacer
cgttaggatatgggaataccagcgttgacggcagca	Protospacer
*********************************.**

4. spacer 3.51|1067247|36|NC_015975|PILER-CR matches to position: 733166-733201, mismatch: 1, identity: 0.972

cgttaggatatgggaataccagcgttgacggcaaca	CRISPR spacer
cgttaggatatgggaataccagcgttgacggcagca	Protospacer
*********************************.**

5. spacer 5.1|1904777|34|NC_015975|CRISPRCasFinder matches to position: 1804589-1804622, mismatch: 2, identity: 0.941

cgccgactccaaattcggcccgcgctgccctgag	CRISPR spacer
cgctgactccaaattcggcccgcactgccctgag	Protospacer
***.*******************.**********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_015975_2 2.4|1047408|34|NC_015975|CRISPRCasFinder,CRT,PILER-CR 1047408-1047441 34 MN657149 Chryseobacterium sp. strain ANT_H2B plasmid pA2BH1, complete sequence 25470-25503 11 0.676

1. spacer 2.4|1047408|34|NC_015975|CRISPRCasFinder,CRT,PILER-CR matches to MN657149 (Chryseobacterium sp. strain ANT_H2B plasmid pA2BH1, complete sequence) position: , mismatch: 11, identity: 0.676

acaaggaaaacacggaagattttaacaacgatat	CRISPR spacer
taggtgaaaacactgaagattttaccaactacgg	Protospacer
  .. ******** ********** **** *.. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 123125 : 131102 8 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_2 174745 : 180201 7 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 340232 : 351061 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_4 721358 : 797583 77 Streptococcus_phage(42.5%) protease,capsid,holin,transposase,terminase,integrase,tail attL 717181:717197|attR 779071:779087
DBSCAN-SWA_5 858568 : 923014 59 Bacillus_phage(15.79%) transposase,tRNA,integrase,protease attL 849818:849833|attR 933017:933032
DBSCAN-SWA_6 1173859 : 1184652 7 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_7 1522451 : 1588014 60 Lactobacillus_virus(13.33%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage