CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_017140	Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence	0 crisprs	NA	0	0
NC_017138	Bacillus megaterium WSH-002, complete sequence	4 crisprs	cas3,DEDDh,WYL,csa3,DinG,cas14j	1	3
NC_017141	Bacillus megaterium WSH-002 plasmid WSH-002_p3, complete sequence	0 crisprs	NA	0	0
NC_017139	Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017138_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017138_1

673466-673555

Orphan

Consensus_repeat	Method
GAAAGATGATCAAGCAACAGATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017138_1

>merge|NC_017138|1|673466-673555|CRISPRCasFinder
GAAAGATGATCAAGCAACAGATGATCAAGCAACGGAAGAGCAAAGTTCTGAAGATGACCAAAGCTCTGAAGATGATCAAGCAACAGATGA

>NC_017138|1|1|673466-673555|CRISPRCasFinder
GAAAGATGATCAAGCAACAGATGA	TCAAGCAACGGAAGAGCAAAGTTCTGAAGATGACCAAAGCTC
TGAAGATGATCAAGCAACAGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017138.1\|WP_042991879.1\|676696_677830_+\|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|181076
NC_017138.1\|WP_013059268.1\|678838_679567_-\|RNA-polymerase-sporulation-sigma-factor-SigK	unknown	unknown	gnl\|CDD\|180266
NC_017138.1\|WP_013059279.1\|670082_670559_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NC_017138.1\|WP_013059266.1\|680109_680649_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NC_017138.1\|WP_014458165.1\|678527_678668_+\|YrzI-family-small-protein	unknown	unknown	gnl\|CDD\|312864
NC_017138.1\|WP_014458158.1\|666989_667919_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_017138.1\|WP_014458155.1\|663784_664201_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NC_017138.1\|WP_014458160.1\|671358_673125_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NC_017138.1\|WP_014458163.1\|674273_674915_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_017138.1\|WP_014458156.1\|665052_666156_+\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|376862
NC_017138.1\|WP_042991878.1\|675771_676695_+\|cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|107204
NC_017138.1\|WP_014458162.1\|673919_674135_-\|YrzA-family-protein	unknown	unknown	gnl\|CDD\|371221
NC_017138.1\|WP_014458159.1\|670684_671236_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|183137
NC_017138.1\|WP_014458167.1\|680763_681546_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|179544
NC_017138.1\|WP_014458166.1\|679783_679933_+\|hypothetical-protein	unknown	unknown	unknown
NC_017138.1\|WP_013059285.1\|664355_664640_+\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|184235
NC_017138.1\|WP_028411671.1\|674932_675628_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NC_017138.1\|WP_013059281.1\|667958_669221_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_017138.1\|WP_013059280.1\|669228_669864_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
NC_017138.1\|WP_042991876.1\|666336_666993_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607

Protein	Function_ID	Function_description	E-value
NC_017138.1\|WP_042991879.1\|676696_677830_+\|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase	gnl\|CDD\|181076	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase.	0
NC_017138.1\|WP_013059268.1\|678838_679567_-\|RNA-polymerase-sporulation-sigma-factor-SigK	gnl\|CDD\|180266	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK.	2.45415e-148
NC_017138.1\|WP_013059279.1\|670082_670559_+\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	3.57405e-81
NC_017138.1\|WP_013059266.1\|680109_680649_-\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	8.22186e-42
NC_017138.1\|WP_014458165.1\|678527_678668_+\|YrzI-family-small-protein	gnl\|CDD\|312864	pfam09501, Bac_small_YrzI, Probable sporulation protein (Bac_small_yrzI). Members of this family are very small proteins, about 47 residues each, in the genus Bacillus. Single members are found in Bacillus subtilis and Bacillus halodurans, while arrays of six members in tandem are found in Bacillus cereus and Bacillus anthracis. An EIxxE motif present in most members of this family resembles cleavage sites by the germination protease GPR in a number of small acid-soluble spore proteins (SASP). A role in sporulation is possible.	2.51092e-10
NC_017138.1\|WP_014458158.1\|666989_667919_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.78036e-106
NC_017138.1\|WP_014458155.1\|663784_664201_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.33648e-62
NC_017138.1\|WP_014458160.1\|671358_673125_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	2.2697e-79
NC_017138.1\|WP_014458163.1\|674273_674915_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.33716e-11
NC_017138.1\|WP_014458156.1\|665052_666156_+\|endolytic-transglycosylase-MltG	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	1.48038e-121
NC_017138.1\|WP_042991878.1\|675771_676695_+\|cysteine-synthase-family-protein	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	7.79649e-147
NC_017138.1\|WP_014458162.1\|673919_674135_-\|YrzA-family-protein	gnl\|CDD\|371221	pfam10750, DUF2536, Protein of unknown function (DUF2536). This family of proteins with unknown function appears to be restricted to Bacillus spp. Structural modelling suggests this domain may bind nucleic acids.	1.46347e-29
NC_017138.1\|WP_014458159.1\|670684_671236_+\|isochorismatase-family-protein	gnl\|CDD\|183137	PRK11440, PRK11440, putative hydrolase; Provisional.	2.03985e-69
NC_017138.1\|WP_014458167.1\|680763_681546_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|179544	PRK03140, PRK03140, phosphatidylserine decarboxylase; Provisional.	2.91115e-132
NC_017138.1\|WP_013059285.1\|664355_664640_+\|DUF1292-domain-containing-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	2.08538e-31
NC_017138.1\|WP_028411671.1\|674932_675628_+\|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	3.22804e-130
NC_017138.1\|WP_013059281.1\|667958_669221_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.95689e-143
NC_017138.1\|WP_013059280.1\|669228_669864_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.97165e-138
NC_017138.1\|WP_042991876.1\|666336_666993_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.36389e-63

>NC_017138.1|WP_014458160.1|671358_673125_+|penicillin-binding-protein-2
MKIIHKRIYITLIFILLLISGLGARLVQLQLVSTESFTDKKINLIEGSVKQRTQEMVVDDGRGKFEDKNGQSLTSITHNRLVLFPFLEKMKWPVQQVSEIVGMQPKELTNRLANAKTPVIITKELSHAQVEKINALKVPGVFGIPLKDERLVPLAEHLIGLEAQSKQIIEEKYSDKLKNGAIKSTTPVGISGMQRAFDEFLLPEQESKLLYHVDRLGGPMFGIDVKYTGTANPYYPVSVRTTLDLAAQELVENTLNHYKLKDGGAVLIDIKNNKVIAMASRPSINKKDPFKKQNGSDSVENRLLTPQTPGSIFKTVTAAAALEQNKIQPSFTYNCDKSIYGNNVEEDHQKGQLTFKESFAQSCNATFAQLAKEMIISNPDIIEQYADKLGLLQPVGWTGDVFHFEHFKQFLGEKSGRVWTNTREKKVPNAVAQTAIGQLDVKVTPLAVANMMATIARGGEKKQVKAVDALEYKNNTSLYTFKEHELKGDTLNKATAASMQQLLKGVVQSEKGTGRRFQTLPYEVAGKSGTAEINVKDDIVNKWFAGYFPADDPKYAMVVVDLNTKSAISPTNSVFYDIVKGMYDLNTR
>NC_017138.1|WP_014458159.1|670684_671236_+|isochorismatase-family-protein
MKDIDFTKTALVLIDLQKGIVPIGGDEIVEKSVQLVNRFREQNGFISFVRVDFQDGKDALTPETDQKPSAPQERPVDWSEFDPRLNVQESDYIVTKRQWGAFFGTDLDLQLRRRGIDTIVLCGIATNIGVESTAREAFQYGYNQIFITDAMATFTKEEHEATLSYIFPKIGKLRTTQQFLTEN
>NC_017138.1|WP_013059279.1|670082_670559_+|transcription-elongation-factor-GreA
MAQEKVFPMTEEGKLKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTLENMIRNAKIIEEDVENSSIVSLGKSVTFVELPDGDEETYTIVGSAEADPFEGKISNDSPIAKSLMGKQIGDQVTVQTPGGDMSVKIVSVK
>NC_017138.1|WP_013059280.1|669228_669864_+|uridine-kinase
MGKKPVVIGIAGGSGSGKTTVTKAIYEYFKGHSIMLLEQDYYYKDQSDVPFEQRLQTNYDHPLAFDNDLLIEHLQNLLNYESIDKPVYDYAIHTRSEKVIREEPKDVIILEGILVLEDQRLRNLMDIKLYVDTDADLRIIRRMLRDIKERERTLESVVDQYVSVVRPMHNQFVEPTKRYADIIIPEGGQNHVAIDLMVTKIQTILEQNAIL
>NC_017138.1|WP_013059281.1|667958_669221_+|U32-family-peptidase
MAVQIDTVVEGKRVITKKPELLAPAGNLEKLKVAVHYGADAVFIGGKEFGLRSNADNFTFEEMAEGVQFANKYGARIYVTTNIFAHNENMDGLEDYLMGLERAGVSGIIVADPLIIETCRRVAPKLEVHLSTQQSLSNWKAVQFWKEEGLERVVLARETGAEEMREMKEKVDIEIEAFIHGAMCIAYSGRCVLSNHMTARDSNRGGCCQSCRWDYDLFKVEDGKTETALFDEQDDPFAMSPKDLNLIQSIPQMIELGIDSLKIEGRMKSIHYIATVVSVYRKVIDAYCADPENFVIQKEWLDELDKCANRDTAPAFFEGVPGVDEQMFGVHGKKTKFDFAGLVLNYDEETSIVTLQQRNYFKPGEEVEFFGPEIKNFTQKIDKIWDEDGNELDAARHPLQIVKFKVDQPLFSYNMMRKGI
>NC_017138.1|WP_014458158.1|666989_667919_+|U32-family-peptidase
MKKPELLVTPTAVSEIESLLQAGATAIMVGEQRYGLRLAGEFKREDIVEAVNIAHQHNAKVYVAMNGLFHNDKIAELNEYILFLKEASVDAIVFGDPAVLMAVRETAPEMKMHWSTETTGTNWYSCNYWGRKGAKRAVLARELSMDSIIDIKEKAEVEIEVQVHGMTCMFQSKRSLLGNYFEYQGKVMEIENRKVEKDMFLLDNERNNKYPIFEDENGTHIMSPNDMCIIDELSEMIDAEVDVFKIDGVLKSPQYILEVTKKYRQAIDLCVDDREEYENVKDDLLEEIESLQPINRPLDTGFFFKETVY
>NC_017138.1|WP_042991876.1|666336_666993_+|O-methyltransferase
MLLQNVEQYVEKLIPKRQELIEEMEAYAKEHHVPIMELIGVETLLQILRLHQPKHILEIGTAIAYSSIRMTHALPESRVVTVERNEERYQKAQEFIERAGKQDKIVSLFGDALELRDEIERHGPYDAVFIDAAKGQYQRFFEHYEPMLSSKGMIISDNVLFKGHVATDLAEVETRRRRSLIKKIQAYNTWLMNHPDYYTTILPIGDGIAISIKRGDQE
>NC_017138.1|WP_014458156.1|665052_666156_+|endolytic-transglycosylase-MltG
MSQQTFLPPNRSRKKRLIFITIIVLLLLVGGAFFYAQSRLTPVDRNSNKKVNVTIPQGSSVQSIGTVLKKEDLIKSKSAFRYYVKLTHVSGFQAGTYLFSPSMSLGEMVEKMEKGEVSKQPDIRVTIPEGRQLVEIADIIAKNTKFTKDEVMKKLDDKAFVNKMKEKYPDLVTDEVMQKDIKHPLEGYLYPVTYDFYDKNVSLDEILDKMVGKTNNVLGQYSGQMKKKKFSAHKLLTMSSLIEEEATAKVDREKIASVFYNRLEKDMPLQTDPTVLYALGEHKDRVFYKHLEVDSPYNTYKVKGLPPGPIASSGLMSIKAALHPANTDYLYFLATPEGKVIFTKTLEEHNKEKAKHITGKEKQNTEK
>NC_017138.1|WP_013059285.1|664355_664640_+|DUF1292-domain-containing-protein
MSVEENKITIVDENGNEQLCEILFTFDSDQYNKSYVIYYPIGADQDDEEEIEIHASAFTPSEDGQDGELQPIETEEEWDMVEEMVNTFLDEEGE
>NC_017138.1|WP_014458155.1|663784_664201_+|Holliday-junction-resolvase-RuvX
MRVLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQELIDEYSVEKIVVGLPKNMNGTIGPRGEACIEFADNVKEKLNIETMMWDERLSTMAAERVLLSADVSRKKRKKVIDKMAAVMILQGYLDSKQ
>NC_017138.1|WP_014458162.1|673919_674135_-|YrzA-family-protein
MNFEFEMIEDKIEFFEAPDVKVLEKQIAEKIDQNKAILLEVHSVSHQMSVDYEQGKKLYSAVVHFKIKKQR
>NC_017138.1|WP_014458163.1|674273_674915_+|class-I-SAM-dependent-methyltransferase
MGLEFLDIFEKWANEYDASVSGKDEQYREVFRNYNEILEYVADRSIGHVIEFGTGTGNLTKKLLEKKLTVVGIEPSVPMRQLAHQKLGADVLVTPGDFLQFDTSLFPAESLVSTYAFHHLTDKEKEEAVINYGKLLQTGGKIVFADTMFETADSFADTIVQAKQKGYTQLAEDLEREYYTTIPVLKQIFESNGFHITFTQFNHFVWVFEATKQ
>NC_017138.1|WP_028411671.1|674932_675628_+|5'-methylthioadenosine/S-adenosylhomocysteine-nucleosidase
MKVAIIGAMEEEVTILRDKIENRQETVIAGCEYSTGTISGVEVVLLKSGIGKVNAALSTAILLEKFKPDYVINTGSAGGFHPELNVGDAVISTEVRHHDVDVTVFNYEYGQVPNLPAAFKADEKLVRLAEESALEVTDMKIVKGLIATGDSFMNDPVRVEFVRSKFPDLYAAEMEAAAVAQVCYQFGVPFVILRALSDIAGKESNVSFEQFLEKAAVNSTKLVLNFITKLK
>NC_017138.1|WP_042991878.1|675771_676695_+|cysteine-synthase-family-protein
MKVSKNVHELIGNTPMIEITQFDLPREIRIFAKLEYVNPGGSVKDRLGKELLQEALGSGRLKRGGTVVEPTAGNTGIGLALAALQHDINVILCVPEKFSIEKQQLMKALGATVVQTPTEAGMKGAINKAQELLREIPDSYCPQQFANPANPMTYYKTLGPEIYEQLDGKVDVFVAGAGTGGTFMGTAKFLKEKNPSLKTVIVEPEGSILNGGKSGPHLTEGIGMEFIPDYMERSYFNAIHTVEDVYAFQRVKELALKEGLLVGSSSGAAFEAALIEAKNAEKGAHIVTIFPDSSERYLSKNIYSGGR
>NC_017138.1|WP_042991879.1|676696_677830_+|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase
MKRKTQLIHGGIVGDEQTGAVSVPIYQVSTYKQEGAGKHTGYEYSRTGNPTRHALEELIKEIEGGYAGFAFGSGMAATTAVFMLFNSGDHVLITDDVYGGTYRVITKVLSRIGIEATFIDTSDIQNIEKEIRPNTKAIFIETPTNPLLKITDLQHASSVAKQHHLLTVVDNTFSTPYWQNPIEKGADIVLHSATKYLGGHSDVVAGLAVVNSPKLAEDLHFIQNATGGILGPQDSWLLMRGIKTLGIRMEEHEFNTGKIVEFLLAHPAVAKVYYPGLKTHPNHLIAKKQARGFGGMVSFDVGSEEKAERVLSKVKYFTLAESLGAIESLISIPSKMTHASIPSDRRKELGITDGLIRISVGLEDVEDLIEDLERALE
>NC_017138.1|WP_014458165.1|678527_678668_+|YrzI-family-small-protein
MTLNIFFLTITIKSRQYSEEEIKHEQYVRQLEEEIKDRKYEFYRHF
>NC_017138.1|WP_013059268.1|678838_679567_-|RNA-polymerase-sporulation-sigma-factor-SigK
MSALFTALGYFFKELVFLVSYVKNNAFPQPLSAAEEKRYLSLMEQGDQEARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESYSQGKGTKLATYAARCIENEILMHLRALKKTKKDVSLHDPIGQDKEGNEISLIDVLKSESDDVIDMIQLNMELEKIKEYIDILDDREKEVIVGRFGLDLQDEKTQREIAKELNISRSYVSRIEKRALMKMFHEFYRAEKEKKKSGKKEN
>NC_017138.1|WP_014458166.1|679783_679933_+|hypothetical-protein
MYGYGGCCYPNYPAYPCGGGFGWGLGLLIVLFVLLLIFGSFYWFFSCWC
>NC_017138.1|WP_013059266.1|680109_680649_-|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MFLLDYLDHTIKKLRSQAANSLTIVNLSLGSFAILFVMKNELNLSLLLIFLAALADRFDGMVARKLQIESELGKQLDSMCDIISFGIAPALLLYQSILSHFGAAGSIVTICYIACGALRLARFNITENTGYFTGLPITAAGCLLTLSYLGVPYLPSHFYMFLIIVLACLMISTFKLKKV
>NC_017138.1|WP_014458167.1|680763_681546_+|phosphatidylserine-decarboxylase
MLQHLYRTFIELTNHQGSSKLIRKFTFSKWSRFVIPSYTKVFKVNKEEMDKPLHHYQNLHELFIRRLKPSARPVDQQKDSVVSPVDAKIEAYGVITPQKEMIVKNKPYSIQEMVSNDLILEKYIEGQFIILYLSPKDYHRIHSPLKAQVGNTWTVGQKSYPVNSLGIKYGKEPLVKNFRKLTELTFENGHMLMVKVGAMFINSIEAVSKKEVVEKGEEMAYFTFGSTVILLFEKNSITFDSNVHSGSYVKCGEPIAHLKK

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Crispr_ID: NC_017138_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017138_2

1128280-1128351

Orphan

Consensus_repeat	Method
GAAAAAGAAAAAGCTGAAAAAGAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017138_2

>merge|NC_017138|2|1128280-1128351|CRISPRCasFinder
GATAAGAAAGAACAAGAAAAAGAAAAAGCTGAAAAAGAAAAAGACTGAAAAGAAAAAGACCGCAAAAGAAAA

>NC_017138|2|2|1128280-1128351|CRISPRCasFinder
GATAAGAAAGAACAAGAAAAAGAAAA	AGCTGAAAAAGAAAAAGACT
GAAAAGAAAAAGACCGCAAAAGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017138.1\|WP_042991931.1\|1121815_1122775_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224005
NC_017138.1\|WP_013058816.1\|1118023_1119112_+\|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380577
NC_017138.1\|WP_013058809.1\|1126452_1126713_+\|DUF3243-domain-containing-protein	unknown	unknown	gnl\|CDD\|378681
NC_017138.1\|WP_014458484.1\|1124314_1125598_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_017138.1\|WP_013058806.1\|1128873_1129458_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NC_017138.1\|WP_014458494.1\|1136333_1136510_+\|hypothetical-protein	unknown	unknown	unknown
NC_017138.1\|WP_013058800.1\|1136527_1138285_+\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|274738
NC_017138.1\|WP_013058804.1\|1130916_1131954_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NC_017138.1\|WP_042991933.1\|1133874_1134672_+\|TIGR00282-family-metallophosphoesterase	unknown	unknown	gnl\|CDD\|379099
NC_017138.1\|WP_013058799.1\|1138271_1139138_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|237006
NC_017138.1\|WP_013058808.1\|1126926_1127718_+\|DUF3388-domain-containing-protein	unknown	unknown	gnl\|CDD\|314698
NC_017138.1\|WP_042991928.1\|1117164_1117890_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NC_017138.1\|WP_042991932.1\|1123032_1124328_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_017138.1\|WP_042991934.1\|1135230_1136148_+\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
NC_017138.1\|WP_013084745.1\|1132230_1133793_+\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NC_017138.1\|WP_003181955.1\|1134894_1135155_+\|stage-V-sporulation-protein-SpoVS	unknown	unknown	gnl\|CDD\|225234
NC_017138.1\|WP_014458483.1\|1120757_1121819_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226962
NC_017138.1\|WP_014458485.1\|1125661_1126387_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235506
NC_017138.1\|WP_042991929.1\|1119231_1120761_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226364
NC_017138.1\|WP_181903773.1\|1129477_1130716_+\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|234789

Protein	Function_ID	Function_description	E-value
NC_017138.1\|WP_042991931.1\|1121815_1122775_+\|ABC-transporter-permease	gnl\|CDD\|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	3.60159e-107
NC_017138.1\|WP_013058816.1\|1118023_1119112_+\|BMP-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380577	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type 1 periplasmic sugar-binding protein-like fold.	1.07776e-110
NC_017138.1\|WP_013058809.1\|1126452_1126713_+\|DUF3243-domain-containing-protein	gnl\|CDD\|378681	pfam11588, DUF3243, Protein of unknown function (DUF3243). This family of proteins with unknown function appears to be restricted to Firmicutes.	7.35358e-39
NC_017138.1\|WP_014458484.1\|1124314_1125598_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.21241e-94
NC_017138.1\|WP_013058806.1\|1128873_1129458_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.68125e-54
NC_017138.1\|WP_013058800.1\|1136527_1138285_+\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	gnl\|CDD\|274738	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit. This family of proteins contains a C-terminal thiamine diphosphate (TPP) binding domain typical of flavodoxin/ferredoxin oxidoreductases (pfam01855) as well as an N-terminal domain similar to the gamma subunit of the same group of oxidoreductases (pfam01558). The genes represented by this model are always found in association with a neighboring gene for a beta subunit (TIGR02177) which also occurs in a 4-subunit (alpha/beta/gamma/ferredoxin) version of the system. This alpha/gamma plus beta structure was used to define the set of sequences to include in this model. This pair of genes is not consistantly observed in proximity to any electron acceptor genes, but is found next to putative ferredoxins or ferredoxin-domain proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM 15236, Rhodopseudomonas palustris BisB5, Os, Sphingomonas wittichii RW1 and Streptomyces clavuligerus. Other potential acceptors are also sporadically observed in close proximity including ferritin-like proteins, reberythrin, peroxiredoxin and a variety of other flavin and iron-sulfur cluster-containing proteins. The phylogenetic distribution of this family encompasses archaea, a number of deeply-branching bacterial clades and only a small number of firmicutes and proteobacteria. The enzyme from Sulfolobus has been characterized with respect to its substrate specificity, which is described as wide, encompassing various 2-oxoacids such as 2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme from Hydrogenobacter thermophilus has been shown to have a high specificity towards 2-oxoglutarate and is one of the key enzymes in the reverse TCA cycle in this organism. Furthermore, considering its binding of coenzyme A, it can be reasonably inferred that the product of the reaction is succinyl-CoA. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and.	0
NC_017138.1\|WP_013058804.1\|1130916_1131954_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NC_017138.1\|WP_042991933.1\|1133874_1134672_+\|TIGR00282-family-metallophosphoesterase	gnl\|CDD\|379099	pfam13277, YmdB, YmdB-like protein. This family of putative phosphoesterases contains the B. subtilis protein YmdB.	1.64803e-169
NC_017138.1\|WP_013058799.1\|1138271_1139138_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|237006	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed.	5.71747e-177
NC_017138.1\|WP_013058808.1\|1126926_1127718_+\|DUF3388-domain-containing-protein	gnl\|CDD\|314698	pfam11868, DUF3388, Protein of unknown function (DUF3388). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 261 to 275 amino acids in length. This protein is found associated with pfam01842.	7.64893e-137
NC_017138.1\|WP_042991928.1\|1117164_1117890_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.64637e-64
NC_017138.1\|WP_042991932.1\|1123032_1124328_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.31696e-64
NC_017138.1\|WP_042991934.1\|1135230_1136148_+\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	4.67786e-112
NC_017138.1\|WP_013084745.1\|1132230_1133793_+\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NC_017138.1\|WP_003181955.1\|1134894_1135155_+\|stage-V-sporulation-protein-SpoVS	gnl\|CDD\|225234	COG2359, SpoVS, Stage V sporulation protein SpoVS [Function unknown].	1.42999e-45
NC_017138.1\|WP_014458483.1\|1120757_1121819_+\|ABC-transporter-permease	gnl\|CDD\|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.96324e-102
NC_017138.1\|WP_014458485.1\|1125661_1126387_+\|SDR-family-oxidoreductase	gnl\|CDD\|235506	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	1.55454e-115
NC_017138.1\|WP_042991929.1\|1119231_1120761_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226364	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only].	0
NC_017138.1\|WP_181903773.1\|1129477_1130716_+\|competence/damage-inducible-protein-A	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	0

>NC_017138.1|WP_013058808.1|1126926_1127718_+|DUF3388-domain-containing-protein
MEKIEWYLEYQIQKNRPGLLGDISSLLGMLSINIVTINGVDDIRRGLLLRCDSHEQIDRLESILKTMDNIIVTKMRPPKLRDKLAVRHGRYIQRDADDKKTFRFVRDELGLLVDFMAELFKQDGHKLIGIRGMPRVGKTESIVAASVCANKRWLFVSSTLLKQTIRSQLIADEYNADNIFIIDGIVSTKRANEKHWQLVREVMNVPATKIVEHPDVFVQNTEYSLDDFAYIIEIRNDPNEKITYEIMEGPQMFQDGGLSMFDF
>NC_017138.1|WP_013058809.1|1126452_1126713_+|DUF3243-domain-containing-protein
MSVLENWDSWKDFLGDRLHHAQNEGMQEEVIHDLAYQIGGYLANQVDAKNDQERILADLWSVASKEEQHAIASSMVKLVQNNGSVK
>NC_017138.1|WP_014458485.1|1125661_1126387_+|SDR-family-oxidoreductase
MEKFALVTGASGGIGTAIAKKLAEDGYSLILHYHQRRDKIEALAHELAEKVKTVFTVQADLSCKEGVEKFLKEIIVPVEVIIHNSGRSVSGLMTDTPANETEEMIYLHITAPFVITKALLPKMISAKSGQILMISSIWGLTGASFEVLYSMVKGAQNTFVKALAKEVALSGIRVNGVAPGAIETDMMASYSKEEVKELAEEIPLGRIGYPKEVADAVSYLISSRASYITGQILSVNGGWYI
>NC_017138.1|WP_014458484.1|1124314_1125598_+|insulinase-family-protein
MEKIEFSQLQEQLYHEKMDNGLQVYILPKPEFNKTFATFTTNYGSIDNQFVPLNEKEMTKVPDGIAHFLEHKLFEKEDGDVFQQFSKQGASANAFTSFTRTAYLFSCTSNFEENLETLVDFVQEPYFSEKTVEKEKGIIGQEITMYDDNPDWRLYFGTIQNMYKNHPVKIDIAGTIESISHINKDLLYTCYETFYHPSNMLLFIVGPVDAEKVMKQVRDNQQKKDYKEISDIQRHFDEEPETVDQEKQVLKMPVQSSKCMVGLKAKNPQRSGGEMLKYELAMNIILDYAFGKSSSYYEELYADGLIDETFAYDYTEERGFGFALIGGDTDQPEQLYDRVKQILLEMKTKSLTEEELERIRKKKIGGFLRSLNSPEFIANQFTRYAFNDMNLFDIVETLEKLKVNEIKDVLNEIIDEKNFTVCEVVPK
>NC_017138.1|WP_042991932.1|1123032_1124328_+|insulinase-family-protein
MKLLTEQKHELEGLTVHTIQTAKYKTNTFILKLNAPLDKKTVTMRALLPYVLQSATESLPSTTKLRTYLDELYGATLQVDLTKKGDNHDITIRIDIANEKYLKDSTPLLQKALALLGDILLKPAVEGDSFLKDIMTKEKRSLRQRIQAVFDDKMRYANLRLVEEMCKEEPYSLHVNGQIEDVEEITGESLYAYYQQVLKEDAIHLYAIGDLQVEEVLQTVKETFTLPKREQKDIEDSITSKDISKVNEVVEKQEVKQGKLNIGYRTNVVYGDRQYFALQVFNGIFGGFSHSKLFINVREKASLAYYAASRVESHKGLLMVMSGIDAKNYDQAVTIIKEQMQEMKQGSFTDGEIAQTKAVIHNQLLETVDTPRGLVEVMYHNELTGKDISIDEYLKRIDAVSKQEIIKVAEKIEMDTIYFLTGTGGEENGEN
>NC_017138.1|WP_042991931.1|1121815_1122775_+|ABC-transporter-permease
MNFLEVLAIIIPAALYSAAPLIFTALGGIFSERSGVVNIGLEGLMMFGAFTGIVSTLLLQDSLGAWAPWVAIVIAAFVCAVFSLIHAVASITLKADQTVSGVALNFLAAGLSIFLIKKIFGKGQTDFIQFRIDKVSIPGLSDIPVIGKILFSNVPITSYIAIALAFAVWYIIYKTPFGLRLRSVGEHPMAADTMGIKVVRMRYVGVMISGMFAGIGGAVYATSIATNFAAGTIAGQGFLAIAAMIFGKWHPIGALGAAMFFGLAQSLSITGAQIPVIQDIPSVLLTIAPYVLTILALTGFVGRAEAPKALGVPYEKGRR
>NC_017138.1|WP_014458483.1|1120757_1121819_+|ABC-transporter-permease
MNKLVKNERVMMILIPVVSAILGLIAGAVIMLLGGYDPMLGYQSLFDGMFGTPKAIGETIRAMTPLALAGIAVAFAYKTGLFNIGVEGQLLVGWLASVWVGYAFDLPAVIHIPLAVLAAAAAGAVWAFIPGFLKAKFHVHEVIVSIMMNYIALYTTSSLIRTYLYAGNEKSYDIKESASLASSFLAQLTNNSRLHYGILITIAAAVVMWFILNKTAKGFELRAVGFNQHASQYAGMNVGRNIVLSMAISGAFAGLAGAMEGLGTFQYMGTFTAFTGTGFDGIAVALLGANSAIGILLASFFFGGLQTAAPQMNFMTGVPSELIQIVIALIIFFVASSYLIRWVLGRAGKGGAK
>NC_017138.1|WP_042991929.1|1119231_1120761_+|ABC-transporter-ATP-binding-protein
MEYVIEMLDIRKEFPGIVANDNITLQVKKGEIHALLGENGAGKSTLMNVLFGLYQPEKGQIRVNGQEVKITDPNVANELGIGMVHQHFMLVQNFTVTENIILGNEPTRTGKINIKKAAQDIQELSNQYGLSVDPSAKIQDISVGMQQRVEILKTLYRGADILIFDEPTAALTPQEITELIQIMKKLIQEGKSIILITHKLKEIMSVCDRCTIIRKGVGVGTVNVKETNPDELAALMVGREVHFKTEKKTATPKEAVLTIKELVVEDSRGVGAVSSLNLSVRAGEIVGIAGVDGNGQTELIEAITGLRKIKSGSITLKNQELSTLSTRKITESGVGHIPQDRHKHGLVLDYTIGENIGLQTYYQKPMSKSGILNYKELYKKAKELIAEYDVRTPSEYTQARSLSGGNQQKAIIAREVDRSPELLIAAQPTRGLDVGAIEFIHKKLIEERDKGRAVLLVSLELDEVMNLSDRIAVIYEGKIVDVVDPKETNEQELGLLMAGGTREKAGGTA
>NC_017138.1|WP_013058816.1|1118023_1119112_+|BMP-family-ABC-transporter-substrate-binding-protein
MLKRKTGLALSLVLAAGTLLSACGSDDAGKSGGDKKAADFKVGMVTDTGGVDDKSFNQSAWEGLTKFGKDNGLDEGTGYKYLQSTKASEYESNLSKFAESGYNLTYGIGFLLKEDIKKAAKQYPDANFALVDDTLKSENLDNVASILFKEEQGSFLVGVVAAKQTKTNKIGFIGGVESPLIKKFENGFKAGVKSVNPDAEVISQYAESFNSPEKGSAIASTIYSKGADIIYQAAGGTGNGVFTEAKNRSKGGKDKKVWVIGVDRDQHEEGMPENVTLTSMVKRVDLAVEDVAKKAMDDKFPGGKEVVFGLKEDGVGIAPSQDNVSKDALKAVDEYKQKILDGDITVPQTDKEFKEFEKTLKK
>NC_017138.1|WP_042991928.1|1117164_1117890_+|GntR-family-transcriptional-regulator
MSIRADNRHLYLQVIDEIKQNIEKGIFKEKERLPSEFDLSKQLGVSRATLREALRILEEENIIVRRHGVGTFVNTKPTFLSGIEQLNSITHMIEQAGMKAGTIFLSSQIQELSENDLTRFACGENEQILFVERVRTANGEPVVYCMDKVPQKILPENFEYKQESLLEILEKQAGKHISYAVANIEPLGYHEKVSPILQCEPETALLVLKQMHYDQYDEPILYSINYFKADQFSFQVLRKRV
>NC_017138.1|WP_013058806.1|1128873_1129458_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MNLPNKITISRIFLIPVFLIFMMVPLPFGTVEAAGKEIPIAHLLGAALFIIASTTDWIDGYYARKYDLVTNLGKFLDPLADKLLVSAALVAIVDLDLIAGAGWAAIIIISREFAITGLRLVLAGEGEVVAANMLGKIKTWTQILAISAILLYNLPFEWVSIPFASVMLWISVIFTVISGWDYFAKNKQAFVNSK
>NC_017138.1|WP_181903773.1|1129477_1130716_+|competence/damage-inducible-protein-A
MNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKETIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVDGKHYMLFPGPPKELYPMYESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHTDTAEAQRMLDEVEKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEVVKGSLVAYHYEIKQSILGVSEHTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKGQAPQVYSLQLSGSRQGIRSRTVNYGCHYVLKMIKK
>NC_017138.1|WP_013058804.1|1130916_1131954_+|recombinase-RecA
MNDRQAALDMALKQIEKQFGKGSIMKLGEQTEKRISTIPSGSLALDIALGVGGYPRGRVVEVYGPESSGKTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKTRIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGRENAKQFLKENTDIRQEIAGQVREHHGLDQDGEPAPEDDDQGDLNI
>NC_017138.1|WP_013084745.1|1132230_1133793_+|ribonuclease-Y
MMDTNTIIFALLGLIVGAVVGFFVCKSIAEAKIAGAKSSAEQIIDEGTREAEALKKEALLEAKDEIHQLRTEAEQDIRDRRAELQKQENRLMQKEENLDRKDESLDKREALLEKKDDSLTVKQQHIEEMESKVEEVVRAQQTELERISSLTREDARAIILDRVENELSHDIAIMVKETENRAKEDADKKAKEILSLAIQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDEYIREVGEQTTFEVGVHGLHPDLMKILGRLKFRTSYGQNVLKHSMEVAHLSGLMAAELGEDETLAKRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINAIASHHGDTEPTSIIAVLVAAADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDTIGDLEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
>NC_017138.1|WP_042991933.1|1133874_1134672_+|TIGR00282-family-metallophosphoesterase
MRILFIGDVVGSPGREMVEEYLPRLKRKYSPGLTIVNGENAASGKGITEKIYRQFLQAGANIITLGNHAWDKREIFDFIDDAKNLVRPANFPEGTPGKGITYFTYNQLEVAVINLQGRTFMAPLDCPFQKADELIEEARQRTPLIFIDFHAETTSEKQAISWYVDGRVSAVVGTHTHVQTADNRILPKGTAYISDVGMTGPYDGILGMEREAVIKRFLTSLPVRFEVPKEGRTQLSGIIIDIDQKTGKATKTERILINEDHPFFE
>NC_017138.1|WP_003181955.1|1134894_1135155_+|stage-V-sporulation-protein-SpoVS
MEILKVSAKSNPNSVAGALAGVLRERGAAEIQAIGAGALNQAVKAVAIARGFVAPSGVDLICIPAFTDIQIDGEERTAIKLIVEPR
>NC_017138.1|WP_042991934.1|1135230_1136148_+|membrane-dipeptidase
MIFDAHCDVLMKLWLNKRLSFTYDLALHVTLEGIKKAKGKVQLFAIYIPEAVPAAQRFDVALEMIQLFQSHILSLPGVKWVRSKHDIDSLKKGEIGAMLTLEGCDAIDTSLVRLKTLFSLGVRSVGLTWNYSNAVCDGILEPRGAGLSSFGREVVELNNEHKVWTDVSHLSVRGFWDVIELAQYVVATHSNSHVLCSHPRNLRDDQIHALIKRNGVIGITFVPEFLTSSAKAQIADVIRHLDYMCERGGEYSVGFGSDFDGIDKTVHRLGRYEQYTNLIEELLKHYTEEQVKRFLFQNFADRVCS
>NC_017138.1|WP_014458494.1|1136333_1136510_+|hypothetical-protein
MKTDYGAAQAETYPVQRQGAVGVLRMILVREMQKQMKSFANLLFSVFINKIDFYIKSN
>NC_017138.1|WP_013058800.1|1136527_1138285_+|2-oxoacid:acceptor-oxidoreductase-subunit-alpha
MVQQLSWKVGGQQGEGIESTGEIFSTALNRLGYYLYGYRHFSSRIKGGHTNNKIRVSTTQVRSVSDDLDILVAFDQETIDVNVHELRVGGVVIADAKFNPSLPETCTTATLYAVPFTEIATELGTSLMKNMVAVGASSAVLHIDTEVFEEVVLEIFGKKGQKVVQKNMEAIKKGADYIREQLGEQLETMKLDPADGKKRMFMIGNDAIALGALAGGARFMPAYPITPASEIMEYLIKKLPQFGGTVIQTEDEIAACTMAIGANYAGVRALTASAGPGLSLMMESIGLAGITEQPVVIIDTQRGGPSTGLPTKQEQSDLMAMIYGTHGEIPKIVMAPSTVEEAFYDTIEAFNLAEEYQCPVIMLTDLQLSLGKQSVEPLDYNRVEIRRGKLQQGELEELEEKQYYKRYRVTEDGVSPRVIPGMKHGIHHVTGVEHDETGKPSESPVNRDDQMNKRLRKTKGIRFNTPIHVHSHEKESDILFVGFNSTRGVIEEAMERLEQDGIKVNHAHIRLIHPFPADELLPYVQGAKKVVVVENNATGQLANILKMNIASHDKIQSVLKYDGNPFLPQEVYAKSKEMFVLNGNV
>NC_017138.1|WP_013058799.1|1138271_1139138_+|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta
MATFKDFRNSVKPNWCPGCGDFSVQAAIQRASANVGLEPHELAVISGIGCSGRISGYINSYGFHGIHGRALPIAQGVKMANRDLTVIASGGDGDGFAIGMGHTVHAIRRNIDVTYIVMDNQIYGLTKGQTSPRSEVGFKTKSTPEGSIESSLSVMELALTSGATFVAQSFSTNLKELTSLIEQGIQHKGFSLINVFSPCVTYNKVNTYDWFKENLTSLSTIEGYDANNRMQAMQTLMEHNGLVTGLIYQNAHQPSYQQLVHGYSEEPLSKADLGMTEEKFDELVAEFM

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Crispr_ID: NC_017138_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017138_3

3998570-3998667

Orphan

Consensus_repeat	Method
TCGTTGTAACTATTATAGTTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017138_3

>merge|NC_017138|3|3998570-3998667|CRISPRCasFinder
TCGTTGTAACTATTATAGTTACATTTGACACAAAAAAAATTTGAGCTTTTTATAGCACTGCTAATTCTTCTCAGCTCGTTGTAACCATTATAGTTACA

>NC_017138|3|3|3998570-3998667|CRISPRCasFinder
TCGTTGTAACTATTATAGTTACA	TTTGACACAAAAAAAATTTGAGCTTTTTATAGCACTGCTAATTCTTCTCAGC
TCGTTGTAACCATTATAGTTACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017138.1\|WP_013055693.1\|3995071_3995515_-\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NC_017138.1\|WP_014461317.1\|3993648_3993876_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|184493
NC_017138.1\|WP_013055696.1\|3993880_3994027_-\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NC_017138.1\|WP_014461319.1\|3995634_3996177_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239313
NC_017138.1\|WP_042992286.1\|3999218_4000547_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238618
NC_017138.1\|WP_014461328.1\|4010212_4011088_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NC_017138.1\|WP_014461318.1\|3994019_3994631_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_017138.1\|WP_014461327.1\|4008208_4009960_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
NC_017138.1\|WP_013055701.1\|3991547_3991721_+\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|237837
NC_017138.1\|WP_014461325.1\|4003912_4004566_+\|DUF1989-domain-containing-protein	unknown	unknown	gnl\|CDD\|132465
NC_017138.1\|WP_014461329.1\|4011179_4012628_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143467
NC_017138.1\|WP_116742283.1\|3991749_3993282_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NC_017138.1\|WP_014461323.1\|4001528_4002878_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NC_017138.1\|WP_014461326.1\|4004582_4008194_+\|urea-carboxylase	unknown	unknown	gnl\|CDD\|274264
NC_017138.1\|WP_014461330.1\|4012779_4013736_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|163676
NC_017138.1\|WP_014461324.1\|4003154_4003892_+\|urea-carboxylase-associated-family-protein	unknown	unknown	gnl\|CDD\|163257
NC_017138.1\|WP_013055689.1\|3998973_3999171_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_017138.1\|WP_013055702.1\|3991159_3991474_+\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NC_017138.1\|WP_014461321.1\|3997915_3998548_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225462
NC_017138.1\|WP_014461320.1\|3996750_3997737_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745

Protein	Function_ID	Function_description	E-value
NC_017138.1\|WP_013055693.1\|3995071_3995515_-\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.95691e-24
NC_017138.1\|WP_014461317.1\|3993648_3993876_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|184493	PRK14082, PRK14082, hypothetical protein; Provisional.	6.36851e-08
NC_017138.1\|WP_013055696.1\|3993880_3994027_-\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	8.32281e-10
NC_017138.1\|WP_014461319.1\|3995634_3996177_-\|peroxiredoxin	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	1.34409e-107
NC_017138.1\|WP_042992286.1\|3999218_4000547_-\|amidohydrolase-family-protein	gnl\|CDD\|238618	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.	1.17798e-110
NC_017138.1\|WP_014461328.1\|4010212_4011088_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	4.05032e-14
NC_017138.1\|WP_014461318.1\|3994019_3994631_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.42584e-10
NC_017138.1\|WP_014461327.1\|4008208_4009960_+\|allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
NC_017138.1\|WP_013055701.1\|3991547_3991721_+\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|237837	PRK14861, tatA, twin arginine translocase protein A; Provisional.	4.96868e-23
NC_017138.1\|WP_014461325.1\|4003912_4004566_+\|DUF1989-domain-containing-protein	gnl\|CDD\|132465	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	5.22679e-121
NC_017138.1\|WP_014461329.1\|4011179_4012628_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143467	cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.	0
NC_017138.1\|WP_116742283.1\|3991749_3993282_-\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	5.97724e-59
NC_017138.1\|WP_014461323.1\|4001528_4002878_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.18592e-40
NC_017138.1\|WP_014461326.1\|4004582_4008194_+\|urea-carboxylase	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NC_017138.1\|WP_014461330.1\|4012779_4013736_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	2.19324e-151
NC_017138.1\|WP_014461324.1\|4003154_4003892_+\|urea-carboxylase-associated-family-protein	gnl\|CDD\|163257	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	7.81741e-114
NC_017138.1\|WP_013055689.1\|3998973_3999171_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	8.42897e-30
NC_017138.1\|WP_013055702.1\|3991159_3991474_+\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	2.42021e-30
NC_017138.1\|WP_014461321.1\|3997915_3998548_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	5.08328e-85
NC_017138.1\|WP_014461320.1\|3996750_3997737_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	7.5552e-67

>NC_017138.1|WP_014461321.1|3997915_3998548_-|NAD(P)-dependent-oxidoreductase
MKIGVIGATGKAGQLIMEEAKQRGHEVTAIVRNASKLKNQTNVIEKDIFSITSKDIEQFDAVVDAFNAPPGSEQLHVESIQSLIKVFQGVQTRLAVVGGAGSLFVDAEKTTPLMSTEGFPAAYYPTASNMGKGLKELEKSTINWTYLSPAAFFDAEGARTGAYQLGKDHVITNSQNESYISYADYAIALIDELENKNHVNERFAVVGEKA
>NC_017138.1|WP_014461320.1|3996750_3997737_-|Gfo/Idh/MocA-family-oxidoreductase
MIRFGVIGTNWITDRLLESAQYVDNFQLAAVYSRTIEKAEEFAGKYDIPHIFTDLEEMAASAEIDAVYIATPNAYHAEQAILFLKNNKHVLCEKPLAANAAEVTRMIQTAKNHKVLLMEAMKSTLLPNFKVIQENLHKIGPIRKYVASYCQYSSRYDKYKEGIVLNAFKPELANGALMDLGVYCLYPLITLFGGPHKIKATAFMLESGVDGEGSVALEYEDRDAVIMYSKITNSHLPSEIQGEKGSMIIDKIHTAEKVEIRYNDGRVEELTVDQPYPAMYYEINEFVELLKQGKTESDTNSYENSYLTMRAMDKVREQIGLVYPNDKK
>NC_017138.1|WP_014461319.1|3995634_3996177_-|peroxiredoxin
MAERMVGKQAPRFEMEAVLANKEFGKVSLEENMKNGKWTVLFFYPMDFTFVCPTEITALSDHYEEFEDLDAEVVGVSTDTIHTHLAWINTDRKDNGLGDLNYPLAADPTHAVARDYGVLIEEEGVALRGLFIINPEGELQYAVVNHNNIGRSVEETLRVLQALQTGGLCPANWKPGQKTL
>NC_017138.1|WP_013055693.1|3995071_3995515_-|TlpA-family-protein-disulfide-reductase
MKLREQMPELTGATSWINDEVTKEDLVGDKATLIHFWSVSCHLCKEAMPEVNDLRDEYDDQLNVVAVHMPRSEDDLDMGVIEAMAMGHDITQPIYVDSEHKLTDAFENKYVPAYYVFDKEGQLRHFQAGGNGMPMLRKRINRVLGEE
>NC_017138.1|WP_014461318.1|3994019_3994631_-|sigma-70-family-RNA-polymerase-sigma-factor
MTQLYSQQEKRHDKECTFHTFLTNHSATLQTHIMNTFLTPERYERLQKAVVKNDTKEQRLLNKEFHQFYSEVRLLHYINKLCKHYSRDVMRVKEKERSYIPLRLQQPAALDGNRTVEDMLGVQDGAVWEHEFLGNQLENRILHHAFRQLTAKQQCMLHLIIVERWTHKEIAAYFSISQQAVSNHYQRALSKLKKIMKVSDRYV
>NC_017138.1|WP_013055696.1|3993880_3994027_-|YvrJ-family-protein
MFDPQWLQLVGNVGFPAVLSFYLLLRVENNIKRLEEKVEELTTDLRKK
>NC_017138.1|WP_014461317.1|3993648_3993876_-|helix-turn-helix-domain-containing-protein
METLYELVNKVKAGDEEASRRLLKKLEPKINKAVQSFSLHDRDDVKQDLKVKILSAVKTFDFSQTPGLWEFLHQK
>NC_017138.1|WP_116742283.1|3991749_3993282_-|diguanylate-cyclase
MSQLLFNITLIISFLFAASIVREQIIYRVEGIKRYKMYRLIYYGCSYGLLGSILMIYTIKIDSTIILDLRFLAVTIVCLYAGMVPAIIAACIIGVMRLLLFGITISGIIGAVSIIVMALLSGWTVRLPYRPFIRFQLMNSISLLCVFFSLSFLFKDIKHAATIIVYLLPASFIGGGLVYLVGRYIYVSRVTTSQHKKLSKMFSVMVQNAKTGTMIETPEREVAVINQTFCDMFDIPGPPNQYVGLESNQLFLSHAPMLKDPARFLKTVESTVYSKESIVDEEITFINGKIYARDYIPIYEGHVYIGHYWEYRDITEKKKAECDLRKANKKLEMLSMKDGLTGLNNRRSLDKQLEIEWEYARKEKEPLSFLLFDIDYFKAYNDTYGHIQGDECLKEVANIAKSVVFDESAFVARYGGEEFGILLTRANQYEAIKMAEAIRQQVEQRGIVHQASEVFKCITISVGIMTVVPSENIPPISIIHGADQALYEAKRTGRNRISVYSHHKEADSNV
>NC_017138.1|WP_013055701.1|3991547_3991721_+|twin-arginine-translocase-TatA/TatE-family-subunit
MNLGFGEIALIVFVALLLFGPKKLPELGKAAGKTLKEFKNATKGIMEEDEKEKAPPK
>NC_017138.1|WP_013055702.1|3991159_3991474_+|multidrug-efflux-SMR-transporter
MAWIALIAAGFCEVGFVIFLKLSDGFKRLFPSIGFILFGAGSFYFLSLALKEIPLGTAYGIWTGVGAAGSVLLGMLFFREAKDMRRILFIFCIVAGVIGLKITG
>NC_017138.1|WP_013055689.1|3998973_3999171_+|cold-shock-protein
MVQGKVKWFNAEKGFGFIEVEGQDDVFVHFSAIQGEGFKSLEEGQEVTFEIEDGARGPQAANVQK
>NC_017138.1|WP_042992286.1|3999218_4000547_-|amidohydrolase-family-protein
MLLHLINVRLPIMHDHALFEVKISNGMYTSIVLQNGYLEGDEFFPLHAAVLGKETSLDAQGRVLLPGFVDMHMHLDKAHSLPQVPNLSGTLQEAIKNYSSSLPTFPEEEIKQRMFKTALQALANGTTTIRTHIDFDCSMEEDSLFRSLQAAVEVRDELSPYMDVQVVPLFSNLDIDDMHKMNKIERALNLEIDAIGGCPHLARNPEKEIDALFSLAQAYNKPLDLHVDESDDPSVDTIINIAHRTIELNMEGKVVVGHLCSLAGMTDAKAKEILNLLKEAKIGVVTLPASNLYLQGREDKGIVRRGVTRIRDIQKAAIPIATASDNVNDPFHPFGKADLLQVGLLTAYAAHMGSPDDQRQLLRMITSIPARLIGKEKYGVEEGNEANFVLLNVQSVQEIWTELPETRFVFNKHRWLSVKETHQRLADTNLTNLWQENQILIG
>NC_017138.1|WP_014461323.1|4001528_4002878_+|amino-acid-permease
MNNQPALSKSLKVYQIVFLGLAWMTPMIFFTVYGVAYDAAGGQMVLAYLLAFLAIFFTAYSYSRMVKAYPIAGSAYTYTKKAIHPRLGFLVGWALLLDYIFSLIISILTFGIFMHTEFPSIPVYVWVIVMNIILALVNIVGIKSVARISGISVVVQILFISLFCLFIIKDIATGQASSSTLFSLHPFLASDVPFTTIFSGAALICFCFLGFDAVTTMAEETIQPERTIPKAIFLIVCIAAVMYIAISYFTQIAYPGFTFTNPDNAAYTLVKLVGGNLLSSLFITVLIIATFTQGVSSVTSVTRFLYALGRESVLPQKVFSYIHPTFKTPVVNILLVTAFSFLGMFIDLNTAVTFVSFGALTAFTFVNLSVIAHFYIKLKKRSFTETILYLIFPLIGAAFIGWLLTLLNKDTLLIGVAWLTIGFLYLFVKSRLSAPFVKREHSKVTVPEK
>NC_017138.1|WP_014461324.1|4003154_4003892_+|urea-carboxylase-associated-family-protein
MSYMWKQTIPAGGKWSGRIGRGKSVTFTAQESGANVSVLLYNAYDLTERYNMPDTLKAQHTAHLTKGHVLMSDNGRAFASITADTTGWHDTISGYTTRSFIQQKYGVSTYQESRNEWRRNGEENFSMELLRNGLTTRDLVPNLNLFSKVYCDEQGNMNFVSSHCKKGDFITLRTEMDLLFVLSNTPNPLDPSGTYPSVPIEITVDEAAPVSSDDYCLNFRPENKRAFENTWSYDLLLGNKTLSTI
>NC_017138.1|WP_014461325.1|4003912_4004566_+|DUF1989-domain-containing-protein
MAVFNRVESNRKIENAIYDETVLAGDGWMHELKPGQTLRIIDVEGNQAADTLFFNAENPEDHYSAVSTIANQGNIYLSTGTVLLSQSGKELVKIVADTCGRHDTLGGACSAQSNTVRYAHDTLPMHNCRDTFMLQLSKYDSRYTKRDLAPNVNFFMNVPVTPSGGLTFDDGVSAPGYYVEMEAINPTLVLISNCPQLNNPCNDYNPTPIRLVIWDSL
>NC_017138.1|WP_014461326.1|4004582_4008194_+|urea-carboxylase
MFTKVLIANRGAIAVRIERTLRHFGVKSVAVYTEADQDSLHVDEADEAILIGSGPVKESYLNEDLILDIAKKTGAEAIHPGYGFLSENAEFARRCRAEGIVFIGPTPQQMEIFGLKHSAREIAQKADVPLLPGTPLITDVSEAVRAAEEIGYPVMLKSTAGGGGIGMRVCQDEKALQAAFDSVCHLAQTNFKNSGVFLEKYIQKARHVEVQIFGNSFGEVVALGERDCSIQRRNQKVIEESPAPDFPSYIRENMLQAATRLAKEVGYRSAGTVEFLYDAEAKKFYFLEVNTRLQVEHGVTEEVLNIDLVEWMLKEACDELVNLPSFLPVPSGHSIQARIYAEDCLNDFRPSGGQIDQAIFSKSSRVETWVRDGITVTSLYDPMLAKIIVHGETREEALLKLSAALKETRLYGITSNLQYLQGLLEEKACKTGDVYTRMLNSYTPSEQAIEVLDGGVQSTVQDYPGRTGHWNVGVPPCGPMDPFAFRIGNKLLGNLPDAPGIEMTLRGGSYKFRDDVSFCITGANMHATLDGAEIPMYKTIQAKPGQILSFSEATEGMRTYLLIGGGLDMPKILGSSSTFTLGSFGGHGGRALRTGDVLRVSDYAHVENELALSDQPTMSKEWTIGVIPGPHCTEEFLHPEYLQQLTNTKWEVHFNSSRTGVRLIGPAPFWTREDGGEAGLHPSNIHDNAYAIGTLDLTGDMPILLGPDGPSLGGFVCPVTTASAEFWKIGQLHPGDKISFKLIDLEQAEKLKCTQEDFLQRIGTSASLPVLTNPVAQPIKSDYPLLINETENRRFPFSVRCSGDANILVEYGEMELDLLLRFQVHALIEAIQKRKDLPVLDLTPGIRSLQIHIDATKMSILELCQHISAIDRALPPLEEMEVPSRIVKLPLSWDDPATQLAIERYQQNVRPDAPWCPSNLEFIRRVNGLDHIEDVKRVVFDANYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTPENAVGIGGAYMCVYGMEGPGGYQFVGRTIQMWNRLRQTESFEAGKPWLLRFFDQIQFYPVEADELLKLREDFLRGRFEADITETTFKLGEYLDFLSSIEESTAAFRHAQQAAFQTERENWKALGLAEYVSEHETAEITEQELPEGTEAARCTMPGSVWKVLVKEGQKVEKGDTLIIEESMKMEFPQLAPMDGYISSIHVKPGDEVQAGQLIAGIKAFAPITN
>NC_017138.1|WP_014461327.1|4008208_4009960_+|allophanate-hydrolase
MKTVSLSKTFSVQWLRDMYIKKELTPEDVVHQILTRVEADKDMNIWITPPTLGKLKPYLDRLATLSPEALPLWGIPFAVKDNIDVAHVPTTAGCKEYTYIPSEHATVVQRLIDAGAIPLGKTNLDQFATGLVGTRSPYGETHNALKSELISGGSSSGSAVSVARGHAAFSLGTDTAGSGRVPAGLNRLIGYKPSLGAWPSAGVVPACKSLDCVTAFAHEWNDVVLVDSIIRGVDDQDPWSRSVVRASSALPEKICMVKEPLSFYGPFAEQYEEAWKQAVKKIEDLSIPIEYIDGSYLSEAAALLYDGPYVAERWADLGEFITSHEETAFPVTEQVLRSGAKSEYDAAALFQASHKLQSFKHKAYHQLKNAVLVMPTAGGTWTREQVRENPIETNSDMGRFTNHCNLLDLCAVSLPSQDADLDLPFGISFFSTFDGEQFICGLSELFLNVERTADSKKDTTLVAVCGLHMRGFPLESQMREHGASFVRKDQTAPYYQLFKLPTSPAKPGLLRTHQQGEKIEVELWEMPLSLLGSFADSIPSPLGLGKITLEDGSEVAGFLCEAHATEDAEDITSYRSWRALSTY
>NC_017138.1|WP_014461328.1|4010212_4011088_-|sugar-phosphate-isomerase/epimerase
MSNQFSLAYLTVLGCSPPEMTYMAAKAGYDFVSLRPIYMGLPGEPNYALAENKQLMRETKSAMSETGVKLLDIELARIYEGVDPKRYLPAMEAAAELGGRHVLSSIWTDDRNFGIECFAELCDLAKPFGLTIELEFVPIASVYNLKGAMDVLHTANRENAGLMIDIHHFHRSGDKVEDLDDVPREWFRYLHLCNASAEIPSSKEEMTRVLREERLYLNEEGIDVASIINRIPQVPYSIELPNVKRANELGYEEFARQCLQTAKQYLDKHPRKKYVSHDAVGQDQLRFHSTR
>NC_017138.1|WP_014461329.1|4011179_4012628_-|aldehyde-dehydrogenase-family-protein
MIETIEKKSQPYINGEWIIEDREVALIKNPYSGEVIGEQLLANEEDVEKALASAYEAKKHVAVLSSYQRSKILKKAALLLEQEKEKFARLISLELGKPLKNTLDEVARSIETLELSGEEAKRLIGETLPGDVSERGAQAIASTFRVPVGVVAAITPFNAPLNLVCHKIGPAFAAGNSVILKPSSQTTLIATELLKLLLRAGFPKNAVNMVLGRRQVAQQIVKDDRVNIISFTGGTVASKNICELAGMKKVLLELGGNAATIVHNDADLNRAAAMCAKTGFSNSGQSCISVQRIYVHQSVISEFTNLLKDEVLKLKIGDPLLPDTDVGCVVDVHAAERVTSWIDEAVQSGAQVICGGKRRGATVEPTVLLNPSKESKVICEEVFGPIISIVPYGTIEEAIEETNDSAFGLQAGIFTNKMDLAYKVAHSLEMGGVVINGTSNFRLDHWPYGGVKNSGIGREGPRYAVEEMTETKMIVLRLPTEN
>NC_017138.1|WP_014461330.1|4012779_4013736_-|hydroxymethylglutaryl-CoA-lyase
MNTIQKIELPEKVIICEVAPRDGFQAEHEWIPTEEKISIIRQLTKTGIQSMEITSFVHPRAIPQLKDAEQVVESVQDLTNIKFRALVPNVKGAQRAIDAGVKKLKLMLSATDSHSLSNANCSVEEAQKGFYPIIELAEKHNVKVGGSISVAFGCPYEGKVAIERISSIVERYRMMGVEEISLADTTGMANPQQVYRMLGFLKQNYPGTIFSMHLHNTRGMAFSNVVAALQQGVIHFDSSIIGLGGCPYAPGATGNIATEDLVHGLSEMGIHTGIDLNKLIQAAKEVKHVIGHDGGSYMLQAGPCSELHAKPKVQEKLV

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Crispr_ID: NC_017138_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017138_4

4636887-4637050

Orphan

Consensus_repeat	Method
TTATTAGAGGAGTTTATGTCGTTATT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_017138_4

>merge|NC_017138|4|4636887-4637050|CRISPRCasFinder
TTATTATAGGAGTTCCAACTATTATTAGAGGAGTTTATGTCGTTATTGTATAAGTTTATTTCGTTATTATAGTAGTTATCCTCTTTATTATAGGAGTTTATGTCGTTATTATATGACCTTAACTCCTCTATTAAATTTTTATTATAGGAGTCACTGTTTTTATT

>NC_017138|4|4|4636887-4637050|CRISPRCasFinder
TTATTATAGGAGTTCCAACTATTATT	AGAGGAGTTTATGTCG
TTATTGTATAAGTTTATTTCGTTATT	ATAGTAGTTATCCTCT
TTATTATAGGAGTTTATGTCGTTATT	ATATGACCTTAACTCCTCTATTAAATTT
TTATTATAGGAGTCACTGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017138.1\|WP_013055105.1\|4652320_4652614_-\|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl\|CDD\|274862
NC_017138.1\|WP_014461869.1\|4642004_4642481_+\|hypothetical-protein	unknown	unknown	unknown
NC_017138.1\|WP_014461868.1\|4640562_4641717_-\|endonuclease	unknown	unknown	gnl\|CDD\|225231
NC_017138.1\|WP_014461872.1\|4646177_4650656_-\|type-VII-secretion-protein-EssC	unknown	unknown	gnl\|CDD\|274860
NC_017138.1\|WP_013055121.1\|4630575_4631025_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236820
NC_017138.1\|WP_014461866.1\|4638255_4638771_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|237597
NC_017138.1\|WP_013055106.1\|4651987_4652227_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227704
NC_017138.1\|WP_016762840.1\|4631197_4631329_+\|YflJ-family-protein	unknown	unknown	gnl\|CDD\|288026
NC_017138.1\|WP_014461863.1\|4633759_4635316_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NC_017138.1\|WP_014461871.1\|4643007_4646181_-\|type-VII-secretion-protein-EsaA	unknown	unknown	gnl\|CDD\|274861
NC_017138.1\|WP_014461859.1\|4627816_4629106_-\|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl\|CDD\|226017
NC_017138.1\|WP_014461873.1\|4650668_4651973_-\|type-VII-secretion-protein-EssB	unknown	unknown	gnl\|CDD\|188441
NC_017138.1\|WP_014461860.1\|4629178_4630360_-\|NO-inducible-flavohemoprotein	unknown	unknown	gnl\|CDD\|237337
NC_017138.1\|WP_014461857.1\|4626055_4626802_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131955
NC_017138.1\|WP_014461867.1\|4638820_4640458_-\|family-14-glycosylhydrolase	unknown	unknown	gnl\|CDD\|366599
NC_017138.1\|WP_042992360.1\|4632562_4633495_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240625
NC_017138.1\|WP_014461864.1\|4635510_4636407_-\|hypothetical-protein	unknown	unknown	unknown
NC_017138.1\|WP_014461861.1\|4631377_4632463_-\|nitric-oxide-synthase-oxygenase	unknown	unknown	gnl\|CDD\|376957
NC_017138.1\|WP_014461870.1\|4642532_4643030_-\|type-VII-secretion-protein-EssA	unknown	unknown	gnl\|CDD\|375148
NC_017138.1\|WP_014461858.1\|4627160_4627673_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228

Protein	Function_ID	Function_description	E-value
NC_017138.1\|WP_013055105.1\|4652320_4652614_-\|WXG100-family-type-VII-secretion-target	gnl\|CDD\|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.56462e-22
NC_017138.1\|WP_014461868.1\|4640562_4641717_-\|endonuclease	gnl\|CDD\|225231	COG2356, EndA, Endonuclease I [DNA replication, recombination, and repair].	5.44777e-60
NC_017138.1\|WP_014461872.1\|4646177_4650656_-\|type-VII-secretion-protein-EssC	gnl\|CDD\|274860	TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal domain. This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_017138.1\|WP_013055121.1\|4630575_4631025_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|236820	PRK11014, PRK11014, HTH-type transcriptional repressor NsrR.	1.52937e-50
NC_017138.1\|WP_014461866.1\|4638255_4638771_+\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	1.22766e-92
NC_017138.1\|WP_013055106.1\|4651987_4652227_-\|hypothetical-protein	gnl\|CDD\|227704	COG5417, COG5417, Uncharacterized small protein [Function unknown].	2.88289e-28
NC_017138.1\|WP_016762840.1\|4631197_4631329_+\|YflJ-family-protein	gnl\|CDD\|288026	pfam11121, DUF2639, Protein of unknown function (DUF2639). This family is conserved in the Bacillaceae family. Several members are named as being YflJ, but the function is not known.	4.75696e-12
NC_017138.1\|WP_014461863.1\|4633759_4635316_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NC_017138.1\|WP_014461871.1\|4643007_4646181_-\|type-VII-secretion-protein-EsaA	gnl\|CDD\|274861	TIGR03929, T7_esaA_Nterm, type VII secretion protein EsaA, N-terminal domain. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This model represents the conserved N-terminal domain.	3.07206e-56
NC_017138.1\|WP_014461859.1\|4627816_4629106_-\|SidA/IucD/PvdA-family-monooxygenase	gnl\|CDD\|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	4.58419e-158
NC_017138.1\|WP_014461873.1\|4650668_4651973_-\|type-VII-secretion-protein-EssB	gnl\|CDD\|188441	TIGR03926, T7_EssB, type VII secretion protein EssB. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. [Protein fate, Protein and peptide secretion and trafficking].	4.02585e-115
NC_017138.1\|WP_014461860.1\|4629178_4630360_-\|NO-inducible-flavohemoprotein	gnl\|CDD\|237337	PRK13289, PRK13289, NO-inducible flavohemoprotein.	0
NC_017138.1\|WP_014461857.1\|4626055_4626802_-\|hypothetical-protein	gnl\|CDD\|131955	TIGR02909, conserved_hypothetical_protein, uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.	9.72918e-74
NC_017138.1\|WP_014461867.1\|4638820_4640458_-\|family-14-glycosylhydrolase	gnl\|CDD\|366599	pfam01373, Glyco_hydro_14, Glycosyl hydrolase family 14. This family are beta amylases.	0
NC_017138.1\|WP_042992360.1\|4632562_4633495_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240625	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.	5.81754e-115
NC_017138.1\|WP_014461870.1\|4642532_4643030_-\|type-VII-secretion-protein-EssA	gnl\|CDD\|375148	pfam17355, DUF5383, Family of unknown function (DUF5383). This is a family of unknown function found in Bacillales. Members of this family are predicted to contain one trans-membrane region.	6.68461e-41
NC_017138.1\|WP_014461861.1\|4631377_4632463_-\|nitric-oxide-synthase-oxygenase	gnl\|CDD\|376957	pfam02898, NO_synthase, Nitric oxide synthase, oxygenase domain.	0
NC_017138.1\|WP_014461858.1\|4627160_4627673_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	3.44804e-78

>NC_017138.1|WP_014461864.1|4635510_4636407_-|hypothetical-protein
MKSKCVLIFLVVVWLFNMGKGIGCGSKVNAEMNIPLSTWVWDTKKWMLNQEAILEKLQEKKVTNVYLQIDTHLSPSVYRHFIQQAQAKGISVYALDGAPYWIGPSGIEEQEAFFNWITAYQAAADEQQQFSGIHLDVEPYLYKSWQDNRAKSILQYQYVISQAAVQSHELHLPLAVDIPFWFDEVPFKNSRGSGSLGHWVIQYADEVTIMAYRNHAGKENGIAQITENERKWGRVLSTPIEIGVETMASDEGEYISFSAKGEEKMMQELGMLLTECQAENPPSSIAVHYFDSWLQMKP
>NC_017138.1|WP_014461863.1|4633759_4635316_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MSVLNVKNLSHGFGDRAIFNDVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDAGKVEWSKKVRVGYLDQHTALERGLSIRDVLKSAFQYLFDLEAQMNGLYEKMADVSPEELEKLLEEVGTLQDLLTNNDFYVIDAKVEEIARGLGLEDIGLDRDVQDLSGGQRTKVLLAKLLLEKPEILLLDEPTNYLDEQHIEWLRRYLQEYENAFILISHDLPFLNSVINLIYHMENQELNRYVGDYDDFMKVYEMKKQQLEAAYKKQQQEMADLKDFVARNKARVSTRNMAMSRQKKLDKMEVIELAQERPKPEFNFKSARTSSKLIFETSDLVIGYEEPLSKPLNLKMERGQKIALVGANGIGKTTLLKSILGEIKPISGSVEKGDYQHIGYFEQEIKTANYNTCIEEVWNEFPHFTQYEIRAALAKCGLTTKHIESKVEVLSGGEKAKVRLCKLINNETNILVLDEPTNHLDVDAKDELKRALKEYKGSILIICHEPEFYQDVVTDVWNCESWTTKLF
>NC_017138.1|WP_042992360.1|4632562_4633495_-|D-2-hydroxyacid-dehydrogenase
MKIHTILVAGRMYKELQEIINQKKLTQTFRFMEEQDVTIEDLNWADALLSFGPTNCFEDHSFKWIHSLGAGVDRFLESGNWKKSVMLTRTVCSFGQRISEYCLSYMLAELQHHTQFQHQQKQKQWKVVEPQQLSTQTVIIYGTGEIGGRLAAVLKSFGVRVIGVSKNGNEKPSFDQVFSISKEKELLKEADWIISTMPLTSETKSYFDQKWMNLVKNAYFINVGRGATVDENALVGAIEQKRIRKAYIDVFEREPLTKESSWWHHSHIIITPHISAVTTPEEAVECFVETLQKVEQGELPSNLVNIERGY
>NC_017138.1|WP_014461861.1|4631377_4632463_-|nitric-oxide-synthase-oxygenase
MKQEELFEQARVFIETCYAELEKSEADKNKRLKEIHQQIMSLGHYDHTFEELEHGARMAWRNSNKCIGRLFWQSLNVFDKREASTVEEVRDALFHHIEYATNDGKIRPTITVFKPKMKAKEPVRIWNHQLIRYAGYETEYGMIGDPDSVAFTEVCQKLGWEGERTHFDVLPLVLQVNEESPRYFEIPKHLVKEVAITHPELPEFEDLQLKWYAVPMISDMKLEIGGIEYVAAPFNGWYMGTEIGARNLADTHRYNQLPKVASIMGLNMNYNATLWKDKALVELNVAVLSSFKREGVSIVDHHTAAQQFHLFEEREQKNGREVTGNWTWLIPPVSPATTHIFHKPYKNKVLSPNYFYQEAAY
>NC_017138.1|WP_016762840.1|4631197_4631329_+|YflJ-family-protein
MHVGSKGWYVEELKKRGVRNHEGRKVEKYKTYVLANLLDKHKN
>NC_017138.1|WP_013055121.1|4630575_4631025_+|Rrf2-family-transcriptional-regulator
MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRGRNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDCEGNFCIISPVCKLKSVLHEAMQAFIKVLDQYTLEDLIQNKDELNLLLLSQKNEE
>NC_017138.1|WP_014461860.1|4629178_4630360_-|NO-inducible-flavohemoprotein
MKQTTISIVKSTVPVLEKHGQAITTRFYEMLFEQYPSLKNVFNQTNQKTGRQQMALANTVYAAAQYIDRLETLLPVVKQIAHKHRSIGVKAEHYPIVGEFLLKAIKDVLKEAATDEIMEAWKEAYGAIADVFISVEQELYEEAEEKGWKDYKKLMVHKKVKEAEDVYSFYLVSPDQKALPAFLPGQYVSVRIPGQEYLSIRQYSLSGYPNQPYYKITVKKEKQMEDGVVSTYLHDQLKEGDLLEVSVPAGDFVLKENNKSVFISGGVGITPMMSMLHQALENNQEVTFIHSAKNEQFHAMKRELQSLSERYTFEQHVFYSKAQTAQQDEHITYGRLTKKELAKYAGDKHAYYYVCGSSSFTQMVLEGLAEMGISQENIMYESFGPKMSMTPSA
>NC_017138.1|WP_014461859.1|4627816_4629106_-|SidA/IucD/PvdA-family-monooxygenase
MTNKQYDMVGIGIGPFNLGLAALAEPLDEIDAVFFDKEEKFEWHPGMLIDGTDLQIPFLADLVTFADPTSPYSFLNYIHKQKRLYPFFFFNRFDIPRQEYNEYAKWVAEQLSSCHFSSKVVDVIPKNEEEYYEVKVETPEGIQTVNAKHVVMGTGSIPLVPPAFDKKLSEHILHSSGYLHKKEEIQKGKHVTIVGSGQSAAEIFLDLLEEQTEHHYHLTWFTRSSNFFQLDQSKLAQELFSPDYVDYFHSLPFEERTSTVEDLNPLRHGIESSTLTKIYDLLYHRSLKGKVPVTIQASTEVSDIHKKGNAYELECKQLKAERSFQYEADRLILSTGYKPKISPFIERIKDDIEWEDDKRFKVTKDYRLVFKHPRNHHFFTLTNIEHSHGSGATNLGLSVQRNQRILNVIAGRDVYPVPEEMTFQTFNLF
>NC_017138.1|WP_014461858.1|4627160_4627673_-|type-1-glutamine-amidotransferase
MSKKIAVLVTDLFEDVEYTDPAKAFEEEGHTLTKIDVKTGEVTGKQGETTLTIDKAIGDVKPEDFDALFLPGGFSPDILRADDQVVAFTKSFMDEGKPVMAICHGPQLLINAETLKGRDVTGFKSIAIDLKNAGANFHDKEVVVCGNQLVTSRTPDDMEAFVRESVNVLK
>NC_017138.1|WP_014461857.1|4626055_4626802_-|hypothetical-protein
MKKRFRIATVAGAVSLGLLTAGQANAAAPDCNTPKQINIKDAQAAQNINVDELLKKFNAQGQSAQAEAPQQETQTPEQAEAAPQEQAKAPEQSEEAKAPEQTQQNTKAQQSENTDKAEQTKDASQFEQKVVDLVNQEREKQGLKPLTLNKELSDVARTKSKDMMDKGYFDHNSPTYGSPFDMMKQFGIEYTTAGENIAKGQQSPEDVMNAWMNSDGHRKNILNPDFTEIGVGYVKGDTTYWTQQFIGK
>NC_017138.1|WP_014461866.1|4638255_4638771_+|peptide-methionine-(S)-S-oxide-reductase-MsrA
MEKATFAGGCFWCMVTPFEELEGIHGIVSGYMGGTVDNPTYEQVKSGTSGYYEVVQITFDPEVFPYKRLLDLYWPQIDPTDDGGQFQDRGSQYRTAIFYHNDSQKQEAEETKLEVAKSGRFKKPIVTRILPASAFYEAEEYHQDFHKKNPDHYKEDRAKSGRDEFIQANWK
>NC_017138.1|WP_014461867.1|4638820_4640458_-|family-14-glycosylhydrolase
MKQLCKKGLAFVLMFIFVNAFILNPLNGAAAVDGKSMNPGYKTYLMAPLKKVTDYTTWEAFENDLRKAKQNGFYAVTVDFWWGDMEKNGDQQFDFSYAQRFAQAARNAGIKIVPIISTHQCGGNVGDDCNVPLPSWVWNLKSDDSLYFKSETGTINKETLSPLATDVISKQYGELYTAFAQALAPYKDVIAKIYLSGGPAGEIRYPSYTAADGTGYPSRGKFQVYTNFAKSKFQSYALTKYGSLAGVNQAWGTNLTSTSQILPPSDGYQFLKDGYSTAYGKDFLSWYQGALEDHTKRIGQLAHQAFDATFNVPIGAKVAGIHWQYNNPTIPHAAEKPAGYNDYNGLLDAFKTAKLDITFTCLEMTDTGNYPEYSMPKTLVRQVAGIANAKGIVLNGENALTIGSEDQYKKAAEMAFNYNFAGFTLLRFYDVINNDTLMGQFKNTLGVTPVAQTVVVKNAPTTVGETVYIVGDRAELGQWDTSIYPIKLTYNASTADWRGTVYFPASQSVQFKAIVKKADGSLKAWQPSQQYWSVPSTTTTYTDNW
>NC_017138.1|WP_014461868.1|4640562_4641717_-|endonuclease
MKLYTLCKKTWAMSLLIFVLLVSLTPVSQAAAFLSVAQALENQNNSVQTVKGYVVGQPTGTSTVITSNYPNDYALALADSANETNTDKMVYVQIPSNLRSTFGLQSHSELKGKSLTVTGTLTPYFSHPGIKSVTSISTETGGTDPTPDPTEPTVPVEDYYRTAAGKTGNTLKTELHNIIDHHTELSYSAVWEALKKTDEDPANANNVILLYTGRSQAKSTNGGGVDDWNREHVWAKSHGDFGTAMGPGTDLHHLRPTDVSVNSTRGNLDFDNGGTEHSEALGNYFDSDSWEPRDEVKGDVARMLFYMAVRYEGDVSDEPDLELNNTVNNGTAPYHGKLSVLLQWNAQDPVDDRERRRNDIIYSDYQHNRNPFIDHPEWVNEIWN
>NC_017138.1|WP_014461869.1|4642004_4642481_+|hypothetical-protein
MLSFDEKLAIISSFPELHRKDVSLGRVNFHYEESVYDKTVVVHHLHPNGNGFVYAGFLKGYETNDKGLVNIRDYTAEELRSIIEASIESLSTLPDTAREEAIVGNGNEQRWNGPDNATLLLVHEDDLWNVYSGLNLEAAFLSYEEAEDYLFEEGFRRL
>NC_017138.1|WP_014461870.1|4642532_4643030_-|type-VII-secretion-protein-EssA
MMKPIVLNKKIGSIVLIFSLLCFPVAAAAEADDGNVEEIKPNVYKDDPINLDPESLLEDKKEVGNIPEEIKDLTFEKEEDVEKESLKENLFANASAEDNTISAKAKEYNLFSSKNTSYKKDRTEQTASEKSSDLQWFYLLLIGVGVVVLFAVLIPRISPQPSVKK
>NC_017138.1|WP_014461871.1|4643007_4646181_-|type-VII-secretion-protein-EsaA
MTEQRKYTLKVILAVVLILALPSFFFQYIGDNPLQVTENSTRTIAVVNEDNGVKENSEKAIEFGEKVTPLLQEGSDYQWTVLGRSAATSGLQNGKYDAVIYIPSTFSQNILSYQEKKPEKATLEYKVQSQLNAVNKEKVVGELEDATTKVNNEMSSLYWSYVSQEVDKVRGQFDKILNKEIAFQKTMVAFYKPNSKDLAGELNDQKKILQQIQDNVNKAEKGSSDRQGDVEQVEKNLNNFIEYVNQYQTYQETQKQMLEKTQAQSVAAIQQGLSSLESNQPSSKQNFNEQANQVFSGLSSIQQQLDENQKAVGELGDQQADNVSEQEKALQDLNGQIISSYKQQSEQTTLNQIESKLKPLRAQLETASSNDGGGGSTDPGESDGTQPDPNQDGETPTDPGDGDGTQPDPNQGGETPTDPGEDDGTQPDSGQGEGTSEPIQVDLSQQTAKLDDISKGLDDLEKQLQGMTSETPQAPEAPETPEGTETPETPDTPDTSGTSNAVKSALEKVANLKTQVQAVKDELQNVTVQPETSGENTDALKQKIASLEADVKSLTAQKNKAEKDLEEATKSSSSQIAKLQEENERLKKENEKLKEDGKKPSKGSADVDGLITMIKNKEDKILSSPNLSASRKEKLSNTFSGKIKSSSAEDLLKYYGDLSQYDLTLAQVGNTDIQNSVLNNDSIKGSLQQALAGTVSSQDARKQIQQNLSLTKEELAQFQSSVQDFADQYGQTVDAEQASIMEELSAIQEKANAMNQELQSSAGEDQALEKKEAPDVTGLMTLQQSMGQELKGMNELISSLGERQANVVTYTDELQKRVNEVQDKADTLNSKWAQNVDSTKLVRGQVYRLLNNTLVDGQNNDYVYHYLANPLQVSGEVPAEKVKEVPPVVILVIILISSLLIGYFSQYYRHAPMLVKGTLFGLLNLIVGLMVSIFSLNIYSLSGDRAMEWSIFTIVLLLASSTLVRVAFLLGSFAGWVTTVGLILFYITPLLNLSMPNFNYKDPVSKVYMSIQYDTQSLFGQALIVLLGMTAVLSVLPSIIRALKTTKEVENDETYSA
>NC_017138.1|WP_014461872.1|4646177_4650656_-|type-VII-secretion-protein-EssC
MNMLWIVSGQTYQQLPIDFKTFRQATVGNTQHQTFTFSYPFEKGQMTLSSEKNGRLLISYGEERIAELSVSESFVWREQGQALTFALTETAVKEAVYYIDYGSEVSFSTSDEAADVYQQKEKCVVEPKKGFYLSKINGKWKVFYNQEPLYLNGHRIEENKNLQPGDLILWSSMTIQLIEKDLLKIQSYYDYASKLPATAQPISEMKKKYPVYRRTPRMIYDLPNDKVSLSFPSQDNDENNRSLWLTILPPLVMLLVMGTVSIIQPRGIFIIISVMMFTTTLIVSTVQYFKDKKQRKKRQERRRRIYTKYLENKREELQELVSVQRDVLSYHFPTFERMKYLTEQISDRIWERTVESSDFLQVRLGTGTVPGSYQISLNSGDMANREIDDLLEQSQHMEKVYREVKNAPVTAHLGLGSIGLVGKMKTVKNELHQLVGQLAFSHSYHDVRFVFIFDEEEYKEWEWMKWLPHFQLPHSFAKGFIYNEQTRDQLLSSIYEMLRERDLDEAKGEGVFLPHFVFIITNQQLIADHVILEYLEGYHPHLGFSAIFAAETKESLTEHVHTLVRYINESEGDILIQKQKAVNIPFQLDKHTLDYNERFARMLRTLDHQVGMTNSIPNSVSFLELFKAREIGELDIVQRWQSNESAKSLAVPIGLKGKEDIVELNLHEKAHGPHGLLAGTTGSGKSEFLQTYILSLAVNFHPHEVAFLLIDYKGGGMAQPFKNMPHLLGTITNIEGSKNFSTRALASIKSELKRRQRLFDRYEVNHINDYTDLYKQGMAEEPLPHLFLISDEFAELKSEEPEFIRELVSAARIGRSLGVHLILATQKPGGVIDDQIWSNARFKVALKVQDAADSKEILKNADAASITVTGRGYLQVGNNEVYELFQSAWSGAPYMEDTYGAEDEVAIVTDLGLIPLSDVSTQQTSSKQAEAEIDVVVQKIEQTQQELGIKKLNSPWLPPLKERLLRSEYKEKRDGVFPIGLIDEPEKQSQTVYNYQLMDDGNIGIFGSSGYGKSFTVMMLLLSLAERQSPEQLHYYIFDFGNGTLLPLRQLPHTADYFLMDQMRKIEKFMTIIKQEIARRKQLFQQHEVSNIKMYNALSSEELPLIFITIDNFDLVKEEMQDLEMQFTQLVRDGQSLGIYMIFTATRVNSIRQSLMNNLKTKVVHYLMDHSEAYSILGRTPYALESIPGRAIIKTDQPYFAQLFLPAEGKDDFEIFDAVKLHIQRLKNQYAGAILPEPVPMLSSKLVLAEFMTDRRVIREKGVIPLGLDEEFVRPVHMNFMKNKHCIVMGQTQKGKTNVVKVILQTALEQGVKQIGLFDSVDRGLSSYAAEEQVVYMETKEQIVDWLDLTEERLQRRENKYLEAVQEGTVHGLSFAPIMLVVDGFVRFQQNLDSVLQDRITKLMKNYSHLGFNLIVAGNNNEFSKGFDALTTEVKQIGQAVLLMKKTEQSLFTLPYDRKEADVNPGFGYYIKSGKETRIQIPLCVSERKILT
>NC_017138.1|WP_014461873.1|4650668_4651973_-|type-VII-secretion-protein-EssB
MSEKKPTYLEEQLEAVMTRHNNEYTFVFQKEKIRLNRSVEIEMLKDVNTTFQKEIMMSDDELKIAIKPTSEFQPFTALRGKEEQQKWLFADQLIKKVKQHSFSRLHLLICPENIIFDKSLSPAFLHYGVKESLPPYEPNEEQSFQELKATIAAAVDSSHTFEQYFKLYETLQLKEDAKKIMHISNEEELSQFVQHKLTQIEKHQKTLVQLPQKRWTIFKFSSVGILVLLIPALIYTFYSYFFAQPKQEAFVESNEYFLEKNYSKVVDKLEDYDIESMPKIVQYEIATSYLVNEKLGEEQKANALKAITLQSDPQYFAYWFYIGRGDNKKALEVSRLLEERSLIIYALMKYEGQLKTDNDLAADKKQEELDKVANELEEFKKENDQQEAEAAKQQEEKQAEEEQAAKQQEEEQKAAEAEKKKQEEQKKQQEDQSK
>NC_017138.1|WP_013055106.1|4651987_4652227_-|hypothetical-protein
MYIEVTVDLKHYTGDRFDLRLSNYHSLKKVVEIVWQAKKITQSPKDGAWIRVSNKNLIFSGNETMINCGITTGDCIEIL
>NC_017138.1|WP_013055105.1|4652320_4652614_-|WXG100-family-type-VII-secretion-target
MSGIIRVTPAELRDMAGRYTNESGQVQELVSRLDTMKNQLQDMWEGASSEAFAAQYEELKPSFVEMSNLLTKIAKQLDDSANVLEDTDNQIASQIRG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016720	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11A, complete sequence	6631-6658	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP043524	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_05, complete sequence	18728-18755	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016726	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence	6631-6658	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016715	Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence	10668-10695	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016747	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1A, complete sequence	15081-15108	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	CP016714	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence	25232-25259	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	CP016714	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence	48839-48866	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_AP018502	Lactococcus lactis subsp. cremoris strain C4 plasmid pC43, complete sequence	3403-3430	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016694	Lactococcus lactis subsp. lactis strain 229 plasmid p229A, complete sequence	25235-25262	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	CP029293	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6	51538-51565	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	CP029293	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6	79343-79370	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP051519	Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence	29250-29277	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_009435	Lactococcus lactis NCDO 1867 plasmid pGdh442, complete sequence	7210-7237	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016687	Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence	7491-7518	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_013657	Lactococcus lactis subsp. lactis KF147 plasmid pKF147A, complete genome	21227-21254	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_019430	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence	24459-24486	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_010901	Lactococcus lactis plasmid pNP40, complete sequence	25440-25467	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016744	Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2C, complete sequence	28890-28917	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP009055	Lactococcus lactis subsp. lactis NCDO 2118 plasmid pNCDO2118, complete sequence	21252-21279	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP031539	Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107A, complete sequence	31852-31879	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP031540	Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107B, complete sequence	47021-47048	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016738	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3B, complete sequence	28872-28899	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_017493	Lactococcus lactis subsp. cremoris A76 plasmid pQA549, complete sequence	26627-26654	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016708	Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence	24461-24488	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_015862	Lactococcus lactis subsp. lactis plasmid pIL4, complete sequence	37860-37887	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_017478	Lactococcus lactis plasmid pSK11L, complete sequence	29074-29101	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_008506	Lactococcus lactis subsp. cremoris SK11 plasmid 4, complete sequence	7115-7142	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	41949-41976	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016701	Lactococcus lactis subsp. lactis strain 275 plasmid p275C, complete sequence	30341-30368	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016729	Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4A, complete sequence	47021-47048	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016733	Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4E, complete sequence	28919-28946	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP042409	Lactococcus lactis strain CBA3619 plasmid unnamed, complete sequence	30293-30320	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_019377	Lactococcus lactis subsp. cremoris plasmid pLP712, complete sequence	721-748	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016735	Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence	18448-18475	4	0.857
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NZ_CP016686	Lactococcus lactis subsp. cremoris strain 158 plasmid p158B, complete sequence	38785-38812	5	0.821
NC_017138_4	4.3\|4636997\|28\|NC_017138\|CRISPRCasFinder	4636997-4637024	28	NC_047949	Aeromonas phage AhSzq-1, partial genome	6661-6688	6	0.786

1. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016720 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11A, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

2. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP043524 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_05, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

3. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016726 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08A, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

4. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016715 (Lactococcus lactis subsp. lactis strain UC063 plasmid pUC063A, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

5. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016747 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1A, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

6. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to CP016714 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

7. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to CP016714 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

8. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_AP018502 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC43, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

9. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016694 (Lactococcus lactis subsp. lactis strain 229 plasmid p229A, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

10. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to CP029293 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

11. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to CP029293 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

12. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP051519 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF52, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

13. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_009435 (Lactococcus lactis NCDO 1867 plasmid pGdh442, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

14. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016687 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158C, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

15. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_013657 (Lactococcus lactis subsp. lactis KF147 plasmid pKF147A, complete genome) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

16. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_019430 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS8, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

17. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_010901 (Lactococcus lactis plasmid pNP40, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

18. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016744 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2C, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

19. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP009055 (Lactococcus lactis subsp. lactis NCDO 2118 plasmid pNCDO2118, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

20. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP031539 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107A, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

21. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP031540 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107B, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

22. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016738 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3B, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

23. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_017493 (Lactococcus lactis subsp. cremoris A76 plasmid pQA549, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

24. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016708 (Lactococcus lactis subsp. cremoris strain UC109 plasmid pUC109B, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

25. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_015862 (Lactococcus lactis subsp. lactis plasmid pIL4, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

26. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_017478 (Lactococcus lactis plasmid pSK11L, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

27. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_008506 (Lactococcus lactis subsp. cremoris SK11 plasmid 4, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

28. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

29. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016701 (Lactococcus lactis subsp. lactis strain 275 plasmid p275C, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

30. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016729 (Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4A, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

31. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016733 (Lactococcus lactis subsp. cremoris strain JM4 plasmid pJM4E, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

32. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP042409 (Lactococcus lactis strain CBA3619 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

33. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_019377 (Lactococcus lactis subsp. cremoris plasmid pLP712, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

34. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016735 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence) position: , mismatch: 4, identity: 0.857

atatg-accttaactcctctattaaattt	CRISPR spacer
-tatgaaccttaattcctctattaaataa	Protospacer
 **** *******.*************

35. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NZ_CP016686 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158B, complete sequence) position: , mismatch: 5, identity: 0.821

atat-gaccttaactcctctattaaattt	CRISPR spacer
-tataaaccttaattcctctattaaataa	Protospacer
 *** .*******.*************

36. spacer 4.3|4636997|28|NC_017138|CRISPRCasFinder matches to NC_047949 (Aeromonas phage AhSzq-1, partial genome) position: , mismatch: 6, identity: 0.786

atatgaccttaactcctctattaaattt	CRISPR spacer
ttgctagcttaactcctctattaaactt	Protospacer
 *.. * ******************.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

880401 : 889707

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013059051.1\|880401_881118_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.2e-47	42.2
WP_014458318.1\|881117_882890_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.3e-24	26.3
WP_014458319.1\|883061_883751_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2D0ZM66	Rhodococcus_phage	6.8e-14	40.7
WP_014458320.1\|883785_885360_-	phosphoglycerate dehydrogenase	A0A2H4PQU8	Staphylococcus_phage	1.0e-28	30.2
WP_014458322.1\|885955_886531_+	ECF transporter S component	NA	NA	NA	NA
WP_013059046.1\|886610_886859_-	ferredoxin	A0A127AYY7	Bacillus_phage	3.6e-18	54.1
WP_042991902.1\|887116_888166_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014458324.1\|888189_889707_+	ATP-dependent DNA helicase RecQ	A0A2P1EM61	Moumouvirus	1.1e-53	31.5

DBSCAN-SWA_2

2849481 : 2857694

Bacillus_virus(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014460240.1\|2849481_2851893_-	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	1.6e-17	36.9
WP_013056909.1\|2852632_2853070_-	RNA-binding protein S1	NA	NA	NA	NA
WP_014460241.1\|2853251_2854073_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-93	64.4
WP_014460242.1\|2854107_2854788_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	G3MA22	Bacillus_virus	9.9e-42	43.8
WP_014460243.1\|2854803_2856273_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	1.4e-114	48.3
WP_014460244.1\|2856296_2856845_-	cysteine hydrolase	G3MA16	Bacillus_virus	3.7e-31	43.3
WP_014460245.1\|2856917_2857694_-	NUDIX hydrolase	G3MA14	Bacillus_virus	6.6e-34	41.9

DBSCAN-SWA_3

4724515 : 4732777

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014461934.1\|4724515_4725094_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.6e-30	39.8
WP_014461935.1\|4725090_4726128_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F0L1	Synechococcus_phage	2.2e-69	45.3
WP_042992377.1\|4726154_4727570_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.6e-55	34.6
WP_014461937.1\|4727545_4729777_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.0e-155	40.3
WP_013055039.1\|4729760_4730447_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_014461938.1\|4730443_4730695_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_014461939.1\|4730702_4731410_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FGF0	Synechococcus_phage	1.6e-42	39.7
WP_013055036.1\|4731484_4732777_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	5.9e-19	25.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017139

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

53642 : 61363

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014462127.1\|53642_54533_-	NAD-dependent epimerase/dehydratase family protein	A0A222YY99	Synechococcus_phage	1.4e-19	26.5
WP_014462128.1\|54748_55972_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_014462129.1\|56086_57004_+	GDP-mannose 4,6-dehydratase	A0A0E3I8S3	Synechococcus_phage	1.1e-38	32.6
WP_014462130.1\|57141_57765_+	peptidase	A0A1V0SAM1	Catovirus	6.1e-06	32.1
WP_014462131.1\|58074_58263_+	hypothetical protein	NA	NA	NA	NA
WP_014462132.1\|58467_59292_-	SDR family oxidoreductase	A0A167RG57	Powai_lake_megavirus	3.5e-33	35.8
WP_014462133.1\|59292_60279_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.3e-45	33.5
WP_014462134.1\|60271_61363_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A2P1ELS7	Moumouvirus	6.8e-93	47.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017138

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017139

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection