CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_015978	Lactobacillus sanfranciscensis TMW 1.1304, complete sequence	0 crisprs	cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	0	6
NC_015980	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS2, complete sequence	0 crisprs	NA	0	0
NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	1 crisprs	cas14j,cas3,cas8e,cse2gr11,cas7,cas5,c2c10_CAS-V-U3	42	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

76163 : 130989

Streptococcus_phage(25.0%)

transposase,protease,integrase

attL 73938:73954|attR 87322:87338

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
73938:73954	attL	NA	NA	NA	NA
WP_014081416.1\|76163_76325_+\|integrase	integrase	NA	NA	NA	NA
WP_014081418.1\|76827_78207_-	amino acid permease	NA	NA	NA	NA
WP_014081419.1\|78419_79850_-	NADP-dependent phosphogluconate dehydrogenase	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	1.3e-38	28.9
WP_049777565.1\|79964_81446_-	glucose-6-phosphate dehydrogenase	M4SP85	Cyanophage	5.1e-67	35.4
WP_041817497.1\|81659_82436_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.3e-26	31.6
WP_014081422.1\|82428_82641_+	hypothetical protein	NA	NA	NA	NA
WP_041817499.1\|82735_84592_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA
WP_014081424.1\|84807_85047_+	hypothetical protein	NA	NA	NA	NA
WP_014081425.1\|85033_85387_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_014081426.1\|85458_87006_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_167534413.1\|87121_87268_+	hypothetical protein	NA	NA	NA	NA
WP_049777566.1\|87337_88177_-	MucBP domain-containing protein	NA	NA	NA	NA
87322:87338	attR	NA	NA	NA	NA
WP_014081428.1\|88296_88605_+	hypothetical protein	NA	NA	NA	NA
WP_144011127.1\|88625_89018_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_041817501.1\|89165_89726_-	ECF transporter S component	NA	NA	NA	NA
WP_041817502.1\|90065_90386_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_014081432.1\|90385_90796_-	cupin domain-containing protein	NA	NA	NA	NA
WP_014081433.1\|90800_91205_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_014081434.1\|91333_91825_+	hypothetical protein	NA	NA	NA	NA
WP_014081435.1\|91837_92302_+	NUDIX hydrolase	D0R7J3	Paenibacillus_phage	8.8e-18	38.6
WP_014081436.1\|92636_93458_+	hypothetical protein	NA	NA	NA	NA
WP_014081437.1\|93518_94517_-	D-2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	2.0e-38	33.7
WP_014081438.1\|94516_95524_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_103434512.1\|95611_96121_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_014081440.1\|96122_96578_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014081441.1\|97523_99110_+	hypothetical protein	NA	NA	NA	NA
WP_014081442.1\|99170_100379_-	peptidase T	NA	NA	NA	NA
WP_041817503.1\|100390_101239_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014081444.1\|101661_102063_-	DUF1801 domain-containing protein	NA	NA	NA	NA
WP_014081445.1\|102155_102608_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_049777567.1\|102890_103139_+	cytidine deaminase	NA	NA	NA	NA
WP_049777641.1\|104327_105629_+	cytosine permease	NA	NA	NA	NA
WP_041817505.1\|105859_106414_+	ECF transporter S component	NA	NA	NA	NA
WP_014081448.1\|106637_107063_+	hypothetical protein	NA	NA	NA	NA
WP_049777569.1\|107288_107792_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014081451.1\|107827_108193_-	YisL family protein	NA	NA	NA	NA
WP_103434664.1\|108260_109184_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014081453.1\|109265_109898_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014081454.1\|109955_110384_-	hypothetical protein	NA	NA	NA	NA
WP_014081455.1\|110393_111038_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_041817507.1\|111037_112432_-	ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	2.4e-10	27.5
WP_014081457.1\|112639_112810_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014081459.1\|113260_113659_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
WP_014081481.1\|113658_114834_+\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	2.2e-113	54.9
WP_014081461.1\|114987_115416_+	MFS transporter	NA	NA	NA	NA
WP_014081462.1\|115437_115752_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014081463.1\|115817_116930_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	8.7e-104	55.7
WP_014081464.1\|117142_117850_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_014081465.1\|117836_118163_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_014081467.1\|118389_118914_-	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	6.9e-19	36.4
WP_041817509.1\|118999_120178_-	thiolase family protein	NA	NA	NA	NA
WP_014081469.1\|120264_120810_+	hypothetical protein	NA	NA	NA	NA
WP_014081472.1\|127742_128798_+	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-27	32.3
WP_014081473.1\|128797_129502_+	ABC transporter permease	NA	NA	NA	NA
WP_014081475.1\|130125_130989_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.5e-42	36.4

DBSCAN-SWA_2

135052 : 195990

Bacillus_phage(23.81%)

transposase,tRNA,integrase

attL 167256:167271|attR 183029:183044

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014081459.1\|135052_135451_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
WP_014081481.1\|135450_136626_+\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	2.2e-113	54.9
WP_081462384.1\|136742_137045_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_049777571.1\|137117_137351_+	hypothetical protein	NA	NA	NA	NA
WP_144011128.1\|137378_137561_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041817511.1\|137591_139706_-	sodium:proton antiporter	NA	NA	NA	NA
WP_014081483.1\|139853_140624_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA
WP_081462385.1\|140779_141058_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014081484.1\|141149_141347_-	hypothetical protein	NA	NA	NA	NA
WP_014081485.1\|141447_142923_-	amino acid permease	NA	NA	NA	NA
WP_014081486.1\|142941_144270_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_014081487.1\|144406_145570_-	MFS transporter	NA	NA	NA	NA
WP_081462386.1\|145556_146591_-	MFS transporter	NA	NA	NA	NA
WP_049777573.1\|146707_147580_+	MFS transporter	NA	NA	NA	NA
WP_041817514.1\|149258_150611_+	SLC45 family MFS transporter	NA	NA	NA	NA
WP_041817516.1\|150704_152963_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_041817517.1\|153019_154003_+	galactose mutarotase	NA	NA	NA	NA
WP_014081491.1\|154005_154677_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_014081492.1\|154747_155251_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041817518.1\|155250_156105_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.6e-41	41.0
WP_014081494.1\|156171_156534_-	hypothetical protein	NA	NA	NA	NA
WP_014081495.1\|156839_157427_-\|integrase	site-specific integrase	D2XR58	Bacillus_phage	2.8e-21	32.4
WP_041817521.1\|157880_159017_+	EpsG family protein	NA	NA	NA	NA
WP_163600789.1\|159050_159443_+	hypothetical protein	NA	NA	NA	NA
WP_041817518.1\|160248_161103_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.6e-41	41.0
WP_041817523.1\|162003_163110_+	glycosyltransferase	NA	NA	NA	NA
WP_049777577.1\|163488_164409_+	capsular polysaccharide synthesis protein	NA	NA	NA	NA
WP_049777578.1\|164474_165683_-\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	1.1e-27	29.2
WP_041817525.1\|165779_166394_+	hypothetical protein	NA	NA	NA	NA
WP_014081503.1\|166950_167919_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
167256:167271	attL	NA	NA	NA	NA
WP_014081504.1\|167923_169372_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_014081505.1\|169468_170437_+	glycosyltransferase family 2 protein	K7Z8A5	Megavirus	2.6e-11	26.2
WP_014081507.1\|170634_171063_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6J1X2	Lactobacillus_phage	1.3e-20	42.3
WP_103434659.1\|172334_172490_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	5.2e-07	49.0
WP_014081510.1\|172766_174434_-	alpha-glucosidase	NA	NA	NA	NA
WP_014081511.1\|174452_175844_-	SLC45 family MFS transporter	NA	NA	NA	NA
WP_014081512.1\|176265_176541_+\|transposase	transposase	A0A1P8CWP5	Bacillus_phage	3.8e-08	37.8
WP_144011130.1\|176675_177371_+	HAD-IA family hydrolase	Q6J1X2	Lactobacillus_phage	1.3e-09	36.4
WP_041817528.1\|177513_179067_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.9e-12	25.9
WP_041817529.1\|179077_180214_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.5e-47	40.3
WP_041817531.1\|180443_181631_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_014081516.1\|182246_182891_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_014081517.1\|182903_183542_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-24	36.1
183029:183044	attR	NA	NA	NA	NA
WP_041817533.1\|183538_184372_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014081519.1\|184446_184956_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041817535.1\|184949_185804_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.2e-41	41.0
WP_014081521.1\|185871_186408_-	folate family ECF transporter S component	NA	NA	NA	NA
WP_049777580.1\|186570_187128_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_014081459.1\|187250_187649_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
WP_014081523.1\|187648_188791_+\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	5.8e-111	54.9
WP_041817537.1\|188940_189324_-	hypothetical protein	NA	NA	NA	NA
WP_014081524.1\|189325_189838_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014081525.1\|189978_190821_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	2.7e-17	39.4
WP_014081526.1\|190978_192172_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.4e-54	35.8
WP_081462390.1\|192215_193625_-	cation transporting ATPase C-terminal domain-containing protein	M1HXH2	Paramecium_bursaria_Chlorella_virus	1.8e-13	34.7
WP_041817539.1\|193722_195990_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.7e-114	29.6

DBSCAN-SWA_3

205404 : 262230

Lactobacillus_phage(17.65%)

transposase,tRNA,integrase

attL 192411:192427|attR 255590:255606

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
192411:192427	attL	NA	NA	NA	NA
WP_014081459.1\|205404_205803_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
WP_014081534.1\|205802_206978_+\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	2.9e-113	54.7
WP_041817544.1\|207546_210162_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_014081536.1\|210200_211085_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014081537.1\|211203_212847_+	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_014081538.1\|212927_213920_+	AEC family transporter	NA	NA	NA	NA
WP_081462391.1\|213988_214132_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_049777581.1\|214073_214379_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B1P773	Bacillus_phage	4.0e-11	37.0
WP_144011143.1\|215851_218329_+	glycoside hydrolase family 68 protein	NA	NA	NA	NA
WP_041818032.1\|220192_220831_+	HD domain-containing protein	A0A1S5XYU7	Kurlavirus	3.7e-14	30.8
WP_049777583.1\|220901_221213_+	HD domain-containing protein	NA	NA	NA	NA
WP_049777584.1\|221291_221501_+	hypothetical protein	NA	NA	NA	NA
WP_049777642.1\|221543_223568_+	KUP/HAK/KT family potassium transporter	M1I6H8	Paramecium_bursaria_Chlorella_virus	1.0e-62	33.3
WP_014081545.1\|223646_224207_+	cadmium resistance transporter	NA	NA	NA	NA
WP_014081546.1\|224218_224548_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014081547.1\|224585_225092_-\|tRNA	aminoacyl-tRNA deacylase	NA	NA	NA	NA
WP_041817546.1\|225211_226792_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_014081549.1\|226866_227745_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.8e-40	40.7
WP_041817547.1\|227832_228558_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_014081551.1\|228744_231138_+	phosphoketolase family protein	NA	NA	NA	NA
WP_049777585.1\|231194_232076_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.3e-06	28.0
WP_041817549.1\|232129_232570_-	universal stress protein	NA	NA	NA	NA
WP_041817551.1\|232929_234111_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_014081555.1\|234231_234639_+	hypothetical protein	NA	NA	NA	NA
WP_014081556.1\|234651_234975_+	hypothetical protein	NA	NA	NA	NA
WP_014081557.1\|234985_235141_+	hypothetical protein	NA	NA	NA	NA
WP_014081558.1\|235351_235891_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041817552.1\|235899_236745_-	hypothetical protein	NA	NA	NA	NA
WP_014081560.1\|236757_237165_-	helix-turn-helix domain-containing protein	A0A0H4ITV7	Staphylococcus_phage	1.1e-06	39.4
WP_041817553.1\|237328_238921_+	ribonuclease Y	NA	NA	NA	NA
WP_041817554.1\|238953_240507_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_014081563.1\|240740_241139_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_014081564.1\|241188_242001_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_163600771.1\|243501_243660_+	hypothetical protein	NA	NA	NA	NA
WP_014081570.1\|243834_244314_+	hypothetical protein	NA	NA	NA	NA
WP_041817556.1\|244683_245646_-	nucleoside hydrolase	NA	NA	NA	NA
WP_014081572.1\|245773_246550_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014081573.1\|246600_247590_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K9L162	Tupanvirus	9.1e-20	28.7
WP_014081574.1\|247635_249774_-	LTA synthase family protein	W6LM83	Streptococcus_phage	4.3e-160	45.4
WP_041817557.1\|249924_250584_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_103434678.1\|250688_251066_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_041817559.1\|251085_253098_-	hypothetical protein	NA	NA	NA	NA
WP_041817561.1\|253135_254059_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_049777586.1\|254214_254859_+	glucosaminidase domain-containing protein	A0A249Y0X5	Enterococcus_phage	3.8e-19	37.6
WP_014081579.1\|254872_255613_+	membrane protein	A0A068EP98	Bacillus_phage	2.9e-39	42.9
255590:255606	attR	NA	NA	NA	NA
WP_014081580.1\|255615_255951_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	1.1e-17	37.8
WP_014081581.1\|255943_257326_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA
WP_041817562.1\|257642_258305_+	LysM peptidoglycan-binding domain-containing protein	A0A0E3XCL7	Enterococcus_phage	3.2e-13	37.7
WP_041817564.1\|258561_259398_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.7e-152	96.8
WP_014081584.1\|259451_259703_-\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	5.1e-36	92.8
WP_103434667.1\|259816_260425_+	sugar phosphate isomerase	NA	NA	NA	NA
WP_014081587.1\|260976_262230_-\|tRNA	tyrosine--tRNA ligase	A0A2C9CYK4	Yersinia_phage	1.8e-89	44.1

DBSCAN-SWA_4

521711 : 530037

Lactococcus_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041817663.1\|521711_524012_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.3e-90	39.1
WP_014081830.1\|524026_524500_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.2e-41	57.4
WP_041817664.1\|524606_525110_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041817666.1\|525109_525964_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.1e-40	40.7
WP_014081833.1\|526056_526746_+	uracil-DNA glycosylase	A0A060LC41	Elephant_endotheliotropic_herpesvirus	4.5e-42	43.2
WP_014081834.1\|526758_527745_+	phosphate acetyltransferase	NA	NA	NA	NA
WP_014081835.1\|527751_528225_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_014081836.1\|528217_528700_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041817667.1\|528719_529253_-	3'-5' exonuclease	M1PFD8	Streptococcus_phage	2.0e-26	40.4
WP_041817669.1\|529266_530037_-	exodeoxyribonuclease III	R4TWA8	Phaeocystis_globosa_virus	2.0e-43	37.9

DBSCAN-SWA_5

716482 : 732501

Bacillus_phage(20.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041817762.1\|716482_718441_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	3.8e-126	43.1
WP_041817764.1\|718598_719228_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_049777605.1\|719262_720147_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_014082014.1\|720237_721170_-	tyrosine recombinase XerC	M4W8M4	Mycobacterium_phage	2.1e-18	28.9
WP_041817766.1\|721222_723346_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	9.8e-96	35.2
WP_081462407.1\|723434_724070_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	3.3e-23	36.6
WP_014082016.1\|724033_724309_-	hypothetical protein	NA	NA	NA	NA
WP_163600775.1\|724350_725121_-	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	8.3e-29	38.8
WP_014082018.1\|725117_725981_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_014082019.1\|725991_726213_-	YozE family protein	NA	NA	NA	NA
WP_014082020.1\|726225_726717_-	dihydrofolate reductase	A0A1I9S5V6	Bacillus_phage	4.5e-20	33.7
WP_014082021.1\|726729_727680_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.9e-120	64.0
WP_041817768.1\|727699_729595_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.4e-55	29.6
WP_041817770.1\|729602_730814_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	2.2e-44	51.2
WP_014082024.1\|730898_732161_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_014082025.1\|732225_732501_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	5.8e-25	68.5

DBSCAN-SWA_6

1114816 : 1166191

Lactobacillus_virus(14.29%)

tRNA,transposase,integrase

attL 1132957:1132995|attR 1166769:1166807

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014082395.1\|1114816_1116106_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-84	40.1
WP_014082396.1\|1116364_1117003_-	deoxynucleoside kinase	Q5ULP7	Lactobacillus_virus	1.2e-49	50.2
WP_014082397.1\|1117084_1118545_-	amino acid permease	NA	NA	NA	NA
WP_014082399.1\|1119533_1120310_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_014082400.1\|1120584_1120782_-	hypothetical protein	NA	NA	NA	NA
WP_014082401.1\|1121034_1121700_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_041817933.1\|1121821_1122667_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_014082403.1\|1122666_1123041_+	DUF1634 domain-containing protein	NA	NA	NA	NA
WP_041817666.1\|1123112_1123967_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.1e-40	40.7
WP_041817664.1\|1123966_1124470_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014082404.1\|1124546_1124915_-	hypothetical protein	NA	NA	NA	NA
WP_103423446.1\|1127784_1128105_-	hypothetical protein	NA	NA	NA	NA
WP_014082407.1\|1128208_1130035_+	FAD/NAD(P)-binding protein	NA	NA	NA	NA
WP_014082408.1\|1130093_1130294_+	hypothetical protein	NA	NA	NA	NA
WP_144011138.1\|1130409_1130835_-	hypothetical protein	NA	NA	NA	NA
WP_014082409.1\|1130950_1131580_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_014082410.1\|1131595_1132042_-	universal stress protein	NA	NA	NA	NA
WP_081462423.1\|1132281_1132449_+	SHOCT domain-containing protein	NA	NA	NA	NA
1132957:1132995	attL	NA	NA	NA	NA
WP_144011139.1\|1132996_1133512_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B1P773	Bacillus_phage	1.1e-24	44.4
WP_144011140.1\|1133571_1133850_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_081462424.1\|1134163_1135753_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	1.1e-06	22.2
WP_041817936.1\|1135924_1136494_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_041818141.1\|1136504_1137194_-	viroplasmin family protein	C1KFJ1	Lactobacillus_virus	5.9e-34	37.2
WP_014082414.1\|1137312_1137753_+	hypothetical protein	NA	NA	NA	NA
WP_014082416.1\|1138066_1138864_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_014082417.1\|1138929_1139106_-	hypothetical protein	NA	NA	NA	NA
WP_041818142.1\|1139107_1139794_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_041817938.1\|1140024_1140228_+	cold-shock protein	Q9AZD3	Lactococcus_phage	1.0e-18	68.8
WP_041817938.1\|1140469_1140673_+	cold-shock protein	Q9AZD3	Lactococcus_phage	1.0e-18	68.8
WP_014082420.1\|1140783_1141323_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_014082421.1\|1141338_1142091_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_041817939.1\|1142093_1142855_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_014082423.1\|1142920_1143691_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_014082424.1\|1143683_1144520_-	hypothetical protein	NA	NA	NA	NA
WP_014082425.1\|1144509_1145880_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_041817940.1\|1145888_1146299_-	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
WP_014082427.1\|1146300_1146726_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_014082428.1\|1146725_1147967_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_041817941.1\|1147992_1148730_-	3-oxoacyl-ACP reductase FabG	A0A0M4JSW6	Mollivirus	4.2e-14	26.3
WP_014082430.1\|1148729_1149647_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_014082431.1\|1149661_1149916_-	acyl carrier protein	NA	NA	NA	NA
WP_041817943.1\|1149945_1150920_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_014082433.1\|1150922_1151369_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_014082434.1\|1151613_1151784_-	hypothetical protein	NA	NA	NA	NA
WP_014082435.1\|1152045_1152945_+	membrane protein	NA	NA	NA	NA
WP_014082436.1\|1152993_1154379_-	class II fumarate hydratase	NA	NA	NA	NA
WP_014082437.1\|1154657_1155920_+	adenylosuccinate synthase	L7Y4J5	Megavirus	3.0e-68	35.8
WP_014082438.1\|1155973_1156552_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_014082439.1\|1156572_1156827_-	acyl carrier protein	NA	NA	NA	NA
WP_041817945.1\|1156906_1158022_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_014082441.1\|1158072_1158327_-	hypothetical protein	NA	NA	NA	NA
WP_014081724.1\|1158560_1159736_-\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	9.8e-114	54.9
WP_014081459.1\|1159735_1160134_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
WP_041817946.1\|1160193_1160781_-	hypothetical protein	NA	NA	NA	NA
WP_014082442.1\|1160880_1161765_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	4.2e-61	44.2
WP_014082443.1\|1161810_1162989_-	ABC transporter permease	NA	NA	NA	NA
WP_041817947.1\|1163063_1165205_-	SH3 domain-containing protein	A7J2B5	Streptococcus_phage	5.4e-17	26.2
WP_144011141.1\|1165912_1166191_+\|transposase	IS3 family transposase	NA	NA	NA	NA
1166769:1166807	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015979

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_015979_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015979_1

28011-28902

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCCCCACGCATGTGGGGGTGA	PILER-CR
GTATTCCCCACGCATGTGGGGGTGATCCT	CRISPRCasFinder
GTATTCCCCACGCATGTGGGGGTGATCC	CRT

14 spacers

c2c10_CAS-V-U3,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_015979_1

>merge|NC_015979|1|28011-28902|PILER-CR,CRISPRCasFinder,CRT
GTATTCTCCACGCATGTGGGGGTGATCCCACGGCACACTCGTATTCTGGATAGGCTTTTTTGGTATTCCCCACGCATGTGGGGGTGATCCTGGAATTGACGGCTACCATGCTTCTGCCGACATGGTATTCCCCACGCATGTGGGGGTGATCCCGTCCCACGCAAGTCAGTCGCAAATTGTACACGGTATTCCCCACGCATGTGGGGGTGATCCTCAAGTCTTGCGAATCATTCAATCCTTCGCCTTGGTATTCCCCACGTATGTGGGGGTGATCCTTTCTTCATGTTTCTGCTCGGCTGTGGCTCTAAGTATTCCCCACACATGTGGGGGTGATCCTATCATGGCGATGAATTTGAAACTCAAAAATTAGTATTCCCCACGCATGTGGGGGTGATCCTATCTTTTTTTCGTGTTCAAAAAATTCCTTTCCGTATTCCCCACGCATGTGGGGGTGATCCTTAACAGTTCTCATGGTATTTTGAGATATACATAGTATTCCCCACGCATGTGGGGGTGATCCTACTACTTGAAATGACGTACCTACAAAACCGATGGTATTCCCCACGCATGTGGGGGTGATCCTAAAATTGAAAAACTTGAAGAAGCACTTGTTAGAGTATTCCCCACGCATGTGGGGGTGATCCTACTCATAAAACAAGCCTACAAGTTGAATTTGAGTATTCCCCACGCATGTGGGGGTGATCCTATAAATGTAATGAAAAGTGAGAGGGGGCTTAAAGTATTCCCCACGCATGTGGGGGTGATCCTAAATTTTTCAGTTCACGCTTTTGGCTTTCATCAGTATTCCCCACGCATGTGGGGGTGATCCTAGCAAGTACAGCATTATCTTATATCGTTGGTTAGTATTCCCCACGCATGTGGGGGTGGATGT

>NC_015979|1|1|28011-28898|PILER-CR
GTATTCTCCACGCATGTGGGGGTGA	TCCCACGGCACACTCGTATTCTGGATAGGCTTTTTTG
GTATTCCCCACGCATGTGGGGGTGA	TCCTGGAATTGACGGCTACCATGCTTCTGCCGACATG
GTATTCCCCACGCATGTGGGGGTGA	TCCCGTCCCACGCAAGTCAGTCGCAAATTGTACACG
GTATTCCCCACGCATGTGGGGGTGA	TCCTCAAGTCTTGCGAATCATTCAATCCTTCGCCTTG
GTATTCCCCACGTATGTGGGGGTGA	TCCTTTCTTCATGTTTCTGCTCGGCTGTGGCTCTAA
GTATTCCCCACACATGTGGGGGTGA	TCCTATCATGGCGATGAATTTGAAACTCAAAAATTA
GTATTCCCCACGCATGTGGGGGTGA	TCCTATCTTTTTTTCGTGTTCAAAAAATTCCTTTCC
GTATTCCCCACGCATGTGGGGGTGA	TCCTTAACAGTTCTCATGGTATTTTGAGATATACATA
GTATTCCCCACGCATGTGGGGGTGA	TCCTACTACTTGAAATGACGTACCTACAAAACCGATG
GTATTCCCCACGCATGTGGGGGTGA	TCCTAAAATTGAAAAACTTGAAGAAGCACTTGTTAGA
GTATTCCCCACGCATGTGGGGGTGA	TCCTACTCATAAAACAAGCCTACAAGTTGAATTTGA
GTATTCCCCACGCATGTGGGGGTGA	TCCTATAAATGTAATGAAAAGTGAGAGGGGGCTTAAA
GTATTCCCCACGCATGTGGGGGTGA	TCCTAAATTTTTCAGTTCACGCTTTTGGCTTTCATCA
GTATTCCCCACGCATGTGGGGGTGA	TCCTAGCAAGTACAGCATTATCTTATATCGTTGGTTA
GTATTCCCCACGCATGTGGGGGTGG

>NC_015979|1|1|28011-28902|CRISPRCasFinder
GTATTCTCCACGCATGTGGGGGTGATCCC	ACGGCACACTCGTATTCTGGATAGGCTTTTTTG
GTATTCCCCACGCATGTGGGGGTGATCCT	GGAATTGACGGCTACCATGCTTCTGCCGACATG
GTATTCCCCACGCATGTGGGGGTGATCCC	GTCCCACGCAAGTCAGTCGCAAATTGTACACG
GTATTCCCCACGCATGTGGGGGTGATCCT	CAAGTCTTGCGAATCATTCAATCCTTCGCCTTG
GTATTCCCCACGTATGTGGGGGTGATCCT	TTCTTCATGTTTCTGCTCGGCTGTGGCTCTAA
GTATTCCCCACACATGTGGGGGTGATCCT	ATCATGGCGATGAATTTGAAACTCAAAAATTA
GTATTCCCCACGCATGTGGGGGTGATCCT	ATCTTTTTTTCGTGTTCAAAAAATTCCTTTCC
GTATTCCCCACGCATGTGGGGGTGATCCT	TAACAGTTCTCATGGTATTTTGAGATATACATA
GTATTCCCCACGCATGTGGGGGTGATCCT	ACTACTTGAAATGACGTACCTACAAAACCGATG
GTATTCCCCACGCATGTGGGGGTGATCCT	AAAATTGAAAAACTTGAAGAAGCACTTGTTAGA
GTATTCCCCACGCATGTGGGGGTGATCCT	ACTCATAAAACAAGCCTACAAGTTGAATTTGA
GTATTCCCCACGCATGTGGGGGTGATCCT	ATAAATGTAATGAAAAGTGAGAGGGGGCTTAAA
GTATTCCCCACGCATGTGGGGGTGATCCT	AAATTTTTCAGTTCACGCTTTTGGCTTTCATCA
GTATTCCCCACGCATGTGGGGGTGATCCT	AGCAAGTACAGCATTATCTTATATCGTTGGTTA
GTATTCCCCACGCATGTGGGGGTGGATGT

>NC_015979|1|1|28011-28901|CRT
GTATTCTCCACGCATGTGGGGGTGATCC	CACGGCACACTCGTATTCTGGATAGGCTTTTTTG
GTATTCCCCACGCATGTGGGGGTGATCC	TGGAATTGACGGCTACCATGCTTCTGCCGACATG
GTATTCCCCACGCATGTGGGGGTGATCC	CGTCCCACGCAAGTCAGTCGCAAATTGTACACG
GTATTCCCCACGCATGTGGGGGTGATCC	TCAAGTCTTGCGAATCATTCAATCCTTCGCCTTG
GTATTCCCCACGTATGTGGGGGTGATCC	TTTCTTCATGTTTCTGCTCGGCTGTGGCTCTAA
GTATTCCCCACACATGTGGGGGTGATCC	TATCATGGCGATGAATTTGAAACTCAAAAATTA
GTATTCCCCACGCATGTGGGGGTGATCC	TATCTTTTTTTCGTGTTCAAAAAATTCCTTTCC
GTATTCCCCACGCATGTGGGGGTGATCC	TTAACAGTTCTCATGGTATTTTGAGATATACATA
GTATTCCCCACGCATGTGGGGGTGATCC	TACTACTTGAAATGACGTACCTACAAAACCGATG
GTATTCCCCACGCATGTGGGGGTGATCC	TAAAATTGAAAAACTTGAAGAAGCACTTGTTAGA
GTATTCCCCACGCATGTGGGGGTGATCC	TACTCATAAAACAAGCCTACAAGTTGAATTTGA
GTATTCCCCACGCATGTGGGGGTGATCC	TATAAATGTAATGAAAAGTGAGAGGGGGCTTAAA
GTATTCCCCACGCATGTGGGGGTGATCC	TAAATTTTTCAGTTCACGCTTTTGGCTTTCATCA
GTATTCCCCACGCATGTGGGGGTGATCC	TAGCAAGTACAGCATTATCTTATATCGTTGGTTA
GTATTCCCCACGCATGTGGGGGTGGATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015979.1\|WP_041818220.1\|16256_16673_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341027
NC_015979.1\|WP_049777660.1\|18230_18605_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_015979.1\|WP_014082584.1\|30579_31524_+\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176191
NC_015979.1\|WP_014082586.1\|33833_34400_+\|DUF536-domain-containing-protein	unknown	unknown	unknown
NC_015979.1\|WP_041818231.1\|36489_37635_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379157
NC_015979.1\|WP_014082573.1\|15223_16153_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NC_015979.1\|WP_014082574.1\|16825_18160_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NC_015979.1\|WP_041818227.1\|32622_33552_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NC_015979.1\|WP_014082581.1\|26653_27874_+\|transposase	c2c10_CAS-V-U3	-	gnl\|CDD\|223747
NC_015979.1\|WP_014082579.1\|24979_25723_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
NC_015979.1\|WP_041818225.1\|29281_30118_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_015979.1\|WP_014082589.1\|39927_41685_-\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
NC_015979.1\|WP_014082578.1\|23832_24912_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_015979.1\|WP_081462442.1\|39682_39883_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372570
NC_015979.1\|WP_011668694.1\|38323_39238_-\|hypothetical-protein	unknown	unknown	unknown
NC_015979.1\|WP_002816285.1\|28976_29228_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|225511
NC_015979.1\|WP_014082577.1\|23219_23792_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_015979.1\|WP_014082587.1\|34621_36475_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|225927
NC_015979.1\|WP_014082576.1\|21497_23219_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NC_015979.1\|WP_014082575.1\|18745_21508_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031

Protein	Function_ID	Function_description	E-value
NC_015979.1\|WP_041818220.1\|16256_16673_+\|MFS-transporter	gnl\|CDD\|341027	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis multidrug efflux protein YfmO, bacillibactin exporter YmfD/YmfE, uncharacterized MFS-type transporter YvmA, and similar proteins. YfmO acts to efflux copper or a copper complex, and could contribute to copper resistance. YmfD/YmfE is involved in secretion of bacillibactin. The YfmO-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.46573e-06
NC_015979.1\|WP_049777660.1\|18230_18605_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.49844e-17
NC_015979.1\|WP_014082584.1\|30579_31524_+\|NADP-dependent-oxidoreductase	gnl\|CDD\|176191	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.2058e-129
NC_015979.1\|WP_041818231.1\|36489_37635_+\|HNH-endonuclease	gnl\|CDD\|379157	pfam13391, HNH_2, HNH endonuclease.	6.0696e-09
NC_015979.1\|WP_014082573.1\|15223_16153_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.29863e-69
NC_015979.1\|WP_014082574.1\|16825_18160_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	3.0969e-110
NC_015979.1\|WP_041818227.1\|32622_33552_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.46109e-40
NC_015979.1\|WP_014082581.1\|26653_27874_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.59108e-17
NC_015979.1\|WP_014082579.1\|24979_25723_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27322e-47
NC_015979.1\|WP_041818225.1\|29281_30118_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.20325e-135
NC_015979.1\|WP_014082589.1\|39927_41685_-\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	4.90429e-78
NC_015979.1\|WP_014082578.1\|23832_24912_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	7.71466e-166
NC_015979.1\|WP_081462442.1\|39682_39883_+\|IS3-family-transposase	gnl\|CDD\|372570	pfam13333, rve_2, Integrase core domain.	1.04805e-05
NC_015979.1\|WP_002816285.1\|28976_29228_+\|IS3-family-transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.47634e-08
NC_015979.1\|WP_014082577.1\|23219_23792_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	4.93691e-27
NC_015979.1\|WP_014082587.1\|34621_36475_+\|DNA-adenine-methylase	gnl\|CDD\|225927	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.08545e-56
NC_015979.1\|WP_014082576.1\|21497_23219_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.30972e-96
NC_015979.1\|WP_014082575.1\|18745_21508_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.03862e-76

>NC_015979.1|WP_014082581.1|26653_27874_+|transposase
MKTVITAKVRLYPSQEQVVQFKAVTKEYQRLCNLVSQWYFDNDCRVNRKKFNQEMYHYLRAESKEINSAMVQSTYRTVEARYKTVETQLKQRPYHYQDQNTGEWYREKRDLSWLHKAIKFSRPQADYVRNINYSFVEQGSKISMNVLGQRIKVAFNGDYLNFFDPNYKLGTAKLVQLKKHWFLHIPVTIETTEWKKEHNQHIIGLDRGLRQIVTSYDEKGNTSFKNGKAIAYKRRKYAYLRSQLQSKGTKSAKRKLKRLSQKENRWINDVNHCLSKTLIGFYGQNSLFVLENLAGVTFEKTNSNKNQTRELHSWAFYDLQTKLAYKARKNQSQVLIVSAKYTSQRCPKCGQIRKENRNHKIHRYDCVFCGFKTNDDRVGAMNLYELGKQYIFGIENPKFELTNVTD
>NC_015979.1|WP_014082579.1|24979_25723_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLTIRLTSPLQSYGNEASFARRTSGDYPSKSVVVGMVAAALGYRRDDQRISKLNELSFAVRVDQRGKNLTDFQTVEWKKNTRKITYRNYLQDAVFMVGIGHENDAMIDKIKQALKNPKFQLFLGRRSNVPAGILDLKSFSNTNPIMALEGLKWQASPWYQEKKWWQTKQEFVEHIEIIADANLLPQKRSTLAKDQVESFDQRNRRHGFRPIAIEEVRLKNPYVERTQAAINPQEPNTHHDPMQFL
>NC_015979.1|WP_014082578.1|23832_24912_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSKNLYIDLNVLQTVPSSNINRDDTGAPKTALYGGVTRARVSSQSWKRAIRTSFKAENVNIGTRTKKAVKLLADKMVTIDSSLNEESAIKKATEVFKTVGIKINKDGETGALLLVSPGQLGKLAQYVTEHEKFNKKEIKEVLKRDDSLDLALFGRMVADDPELNVDASAQVAHAISTHEIVPEFDYYTALDDLQSEDSAGAAMLGTIEFNSATLYRYANVNLNELVRNLGKNDAVQGISAFIKSFILSMPTGKQNTFANKTLPNYIMITIRTDTPVNLVSAFEDPVRSNHGYVEKSVKILEDEYQSIQKSGLVNKPALNVVLTNSKYDSQLAEPVTNLDELLNKVTKTLTEVVQEKVNN
>NC_015979.1|WP_014082577.1|23219_23792_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MKVMPYKIQNTATRIIQKLYGNGSLDKAVLASARSGATINSQRAQRVWPIMMANLDDNMLSKTGEPTYAEIAIYAAIHFYAIYQQGKETMVFGPAGPAEDADGLQLFQALANLRKRDETRVALDRRVQAILGTTNINSVINGITHLIEILKANSNLPKIDFAKLAENLYWYQLSYEHANEVRLLWGQQYF
>NC_015979.1|WP_014082576.1|21497_23219_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSDRKFNLVTDPWIKVIEKGTNQEKTVSLIKLFQNAHDYRDLAGEMRSQDLAILRFLLAILTTVYSRFNANNEPYDWLTIDENTMQVSQSVDEDDYDQEDENDLLDTWKTLYQNGNGHFTGIVTKYLKRYEDHFCLFGEHPFYQVTESEYNQFVPTKKQIKAGKGPGTVAVKQINRQISESAHTPAVFSPKADEFKNDIKLDEFVRWLITYQNFTGVTDKTKIKTTEKFSVSRGWLYQLNPVYAAGNTIFQTLMLNLVLMRKGKMYYPQKPVWEYESVEDYVNKRKEQQIPDNIAEIYTSWSRILHIDWHQGERPTIFSAGIPMFDSQDAFIEPMTIWRIDKKSNRYKPAVKWLRSLGTAMWRNFGQYVNVNGTDDMHEPGIVEWLNLLKNKGIIPYNSHLTLASATLVSDGNATSQAPAAEVYDDMHVNADVLFDKRNPNYWPKRIEDTIELTQIIGKDFWQFAMKIGQIRNSDAAPFANRLSSKFYESLNEPFKAWLVHLTNHDDREREIELWKETLRKLVLDAASQVIQASSPRDIRGFVDDKGIVNNIFTANNHLRYKLQVDLKIEKKR
>NC_015979.1|WP_014082575.1|18745_21508_+|CRISPR-associated-helicase/endonuclease-Cas3
MIDLTKRERALWAKKRSDDGNQHWLPLVTHLIDAQKTINWLFNHWISDEQRQLIANGLSDENIQKLVKFIGFSHDIGKATPAFQTKPSYGGDRSLDAEVIERLVRSGFVKLDDSLLTCASKSPHAEAGEAILENLGVPVSVGAIIGGHHGKPLPDAPRAQLNDYTANYYQSDIDQAAQKRWKQVQTDIFDYGLKLSGYERIDQIPSINQPQAVLLEGLLIMADWLASSEYLNDDESKPLFPLIQMNQSLTDIDMNSRFENAIETWDLSGEWEPQRVSTDNDPYKSRWGFNARPVQLAMTSIIGDTVDPGMVIVEAPMGLGKTEIALVAAEQLAYQKGKDGLFMGLPTQATTNAMFDRVDGWLEKLAENQDEKFSIKLMHGKAQFNKNYQNLPYASNIDDPDGSGKAGSVVVNSWFSGKKSILTKFTVGTIDNLLLMGLKQKHLFLKHLGFSGKVVIIDEVHAYDSYMNQYLYKAINWLGAYHVPIVILSATLPKEKRNLLLIAYLRGKYGKKYKQIFEASTGWQDTQAYPLLSILDGSKLTQISNFPGQNDQPVTQLDVERLNLDDKTLIQHVLHKISAGGIAGIIVNTVRRAQKLARLVPQDTQLMILHSAFLSPDREKQEEALQNSIGKHGQRPTKMIVIGTQVLEQSLDIDFDVLYTDIAPMDLILQRAGRLHRHDIKRPEALKLPQVYVMGINDFGDYGDANQAIYPKYLLIKTDYFLKNKIILPDDISKLVQEVYDPHTDDQVGDIADAKAEFDNKFETEKHKANAFQIDKPSYGRNTTIHGWLNRSQVDVDKDEQKANAAVRDIRETLEVILLKHTNQGNFLLDGRHLAKVAPQEIAEQLIRIPSAVTPRIDKAIDALENLTSKYYPQWQESPWLRGALALPLDDNLSARLGEWSLTYTSKFGLSYERKDENER
>NC_015979.1|WP_049777660.1|18230_18605_-|IS3-family-transposase
MIFSNHPDFNSVFLPIKEAILKLPKTHFKRFFHSDQGVHYQNKRLNKFLKKNHITQSMSRKATCLDNAVIESFFHLLKIKIGNNFSTKEESINSVRNWIYYYNNFRIKTKLGGKSPIQYRKLVS
>NC_015979.1|WP_014082574.1|16825_18160_+|NAD(P)/FAD-dependent-oxidoreductase
MTESYQFDVLYLGAGHGALDGAVPLANSGKKVAIIEAGKIGGTCPNRGCNAKITLDNPVQLLRHQERLDGIVNGDLKLDWTANVEHEHEVIDGLPDMITGLLDSVDIEIIHGRGKFVDAHTIEVDQQRYTADKIVIATGLRPHHLDVMGSELTHDSTDFMNLKQLPENIVIIGAGYIGMEFATIANAAGANVTVLLRHNRALRKFNQDYVKQVIADLEKRGVKFIYNAQVDRFEEDGSHFTVSYNDHETLTTDWILDATGRIPNIENIGLDEVGVSYNANGIEVNDHLQTNIDNIYASGDVLDKEQPKLTPTAIFESSYLTQLFTGKTTDAINYPPIPTIVFTSPQIAQVGMSVEEAQQNPDYTIKTNHLPDGWFRQVDKETIGDNTLIYDQDHHLVGAAEVSEHAADAINVLLPAIEFQYTAEQLGRIVPLFPTLGADVWSQI
>NC_015979.1|WP_041818220.1|16256_16673_+|MFS-transporter
MLIFGILMGLVAGPLSNKFKILKLPVGLSTILLAIAGLSLFFLRNNTGIILYALAAGLGMGLWNALDNLLNLKVIPDQNHVAFFLGVYNLGNTITQAIAPVLAAAVISLFGYSGIFIVSFIFSLIGGISMLSIKSLKR
>NC_015979.1|WP_014082573.1|15223_16153_-|IS30-family-transposase
MSSITYSERIKIETFCELGLSNIQMGVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSRCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFKLATKSIYNWLNQGRIDFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQCPMMINQRKRIGDFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNEALTKFLTTFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTPYQVMLTNLSKNSD
>NC_015979.1|WP_002816285.1|28976_29228_+|IS3-family-transposase
MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK
>NC_015979.1|WP_041818225.1|29281_30118_+|IS3-family-transposase
MCRILGVSRAQYYRYRSPKPSKRRAGDVGLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQRRCSPRRISWLMKELDIHSVTVNKWKAASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA
>NC_015979.1|WP_014082584.1|30579_31524_+|NADP-dependent-oxidoreductase
MKAVIINQYGGPEELQMATIERPSIDQNEVLVAVQATSINPIDWKARQGLLKGMFDWQMPVVLGWDVAGTIVEAGAAVTNFKVGDEVFARPDIYADGRRGTYAEYAAVKEDKLALKPASLSFEQAAALPLAGLTAYQVIHDQLKIQAGEKVLIQAGAGGVGLNAIQIAKYLGAEVATTASANHHTLLKQIGADHVIDYHTTAIQDVLTDYDAVFDTIDAIDKGLAILKPTGRLVTIDGQPTAAQKSQGPTVSSWWLQPNGRELAILGQLAVEGHLQVIIDQVFPFSTAGLQAAHRYSENSHSAGKLIINVGTEA
>NC_015979.1|WP_041818227.1|32622_33552_+|replication-initiation-protein
MSNEIVKYDPELNTIPLRKFTPVEMNLFFSIVSRMRDKGDENVRFSFDQLKELSAYKPTANNRFIDDIESTYQKILGLRFGRRSKDGLYREFFVMFTEFEINGHADDPYVDIKIYPKAIKLLNELESWVRYALSEFRDLKSSYAKTMFRLLKQFRTTGYAYFSVADFNELLDVPKSYKSSNINQSVLKPIKEELTPLFRGLTVRKKYGKGRGKPVIGYSFTWKPEKKDANDFSQGQLQDERQKLFNIQHNDELTEQEKWRAIDKVKGLTLGSTEKQALADKQAEHDKKIRDQAQKEALAELRKGFGNHA
>NC_015979.1|WP_014082586.1|33833_34400_+|DUF536-domain-containing-protein
MGKTIRQLSEEFKLSKQAINQHINSINGFRSKHTYKVKNHLEIDNQGVKMLANFDKQKRQERQPNRQAENDKDKNIDQILLKQLDVKDQQIANLQQALDQQQKLQIATVAENHRLKEHVQKLSGLFESSSATHQQQLNDKDDTLTNSSNTSHIKDKNDNKNGNKVDEYRNREKKVSKSKTNNSWWHFW
>NC_015979.1|WP_014082587.1|34621_36475_+|DNA-adenine-methylase
MRFLGNKESMTDEIRDILKKKHLLNKKLTFFDAFCGTGAVSDSLKDQFNIIINDSLTWCTIYSQARIDGESIKFENLNFNPFKYFNQPKISEEGFFYQTYSPGGSDRMYFSTENAGKIDFIRHTIQSWYDTKLVSKNEYMFLLASLIESMSKVANVAGVYGAFLKKWDPRALKPMEFIPVPFKKIKNRDLQVFNDKIENIIGTVDTDILYLDPPYTQNQYGTQYHIFETLIKDDHPSVSKVTGSRPTGPMRSDWSKEYKAQILFDKILSETKAKYVMLSYNNDGIMSKTFIESALKRYGKAETFELKKINYKKYRNFKTKTTNEHFEYLFFIELKRKIDVTYESPLNFTGSKYQMLGELSKYFPQNITTVVDIFGGGFNFGANYEADTVIYNDINFIVKDLIEMIAEKNTYDLIRYIHKIIKRFDLSAGNKESYVAARAYYNNLPNGDKDPQMLYTIVMYGFQQQLRFNSKLEFNNPVGMRWFNDKILEKLISFSRHIKTKNLVFESKSFEELYIPQGEDTLVYLDPPYLLTTGSYNDGKRGFKGWNRKEEKQLFSFMENLNENGNRIMFSYVVKHKGKVNQNLLNWLDTHKSFNLFELSGIKGRKRNEILITNYDI
>NC_015979.1|WP_041818231.1|36489_37635_+|HNH-endonuclease
MMIQVTINNKFQKREDTYKEILSNGVLDDLVKKVTGHTDYDVKYIDKTNKGRLVVIEQENEKDFVCLSDDCPAGRNSYFQSFPTTVNKYILDKHTNKRIFYYNLPTLDKINIETDYHRMMYRLMATIGTEFLNATEYLKEPIVAFNSVADFIRIRTNELSKKQNNSTYVTVDESNNTVIYGKVYGANKYETTLISIAMNAITMAKTTLYEFVEKDLNELPKASRKALEKIGINIVKMDSEIEKHEFEKGDSLRSPKYISNLLAIYGPKHCAFCDCDIPQLIQGAHIYPVADIKKLAVPLEKKIEMATDGKNGLWLCNNHHKLLDSGIITLSTNGDIKINTEDLEKTSLNFIKNSLVLSRLPEDVITPNFVSYLNKRISAAS
>NC_015979.1|WP_011668694.1|38323_39238_-|hypothetical-protein
MKFMTHVSRDYLIGFALVLLMVAGAMFLHDQEIILPEIAALTAGMWIYHNPRWLHQPYKIFLAPSGTAVIGFLINQLPVNYPIKISLTLVGILVLLRELRSPLAPAFATGLLPIIVNATHWSFIGAIFLFTLILMIGVLRQGHYRRAIASDPIHFQHILGFAAVAIVWIIGVCLAGQPQMAGIPPVLVVFFEVLQRPTYSGKLALKQIAALSGAATIGVVGHLLVTSWLLATLISLPLVLLLLALLNLKLPAAYAFPLLALVLPPTMFIHLPIAATLAASFFLGTVLVYRKITAAMTTSITEEN
>NC_015979.1|WP_081462442.1|39682_39883_+|IS3-family-transposase
MAESTFHILKVETVQTNHHESYDELKSATANYVYYYNKQIKTKLVGKTSLQFLGSAHSLLVKRDFF
>NC_015979.1|WP_014082589.1|39927_41685_-|DUF2075-domain-containing-protein
MTQLYIETIPYTEEAIKNFEHKFDLTSEEERFPIDFPSVYIGESEKENKHTKQIQREAYVGETNWIVQRTKEHLNGGLKDKLNQLNKKGDMSLHIIGHKKFNKSATLLIEQTFMNYLLGDPKFTGIDDLTNDEVSGLNNGRSNDQPDFFDREMYETEVFPQIWKELQRRGIVSSFSTVKNSPLFANSPFKNLSSEQLKAKRILLDKIEAEVSKSQQSTKILKVSGAAGTGKTILLSSLFRDLYDNPFTVNEGNQKRETNVAMLVRHAEQLKIYQQVAKKTNMGNVVFDVPKFISNGKMFDVVLVDEAHLLWTGNFGRVKGDTWLPDLEAIMKLAKVVVLIYDQNQRVSSRGYLPDKLQQIVESAESVSLEKQWRIDASEKTKRYIWNLTHFEKNSLTRPVQDSNYEIKFFNSAQTMFEAIRQKDSEFGLSKLVSTYDWKYSQGSKPKNGDDYWMIRTSDGLELPWNLELPEVQKKRKSGVPWQEVPESIDEIGSNYTIQGSDLNYVGVILGPSVIWDEENNSFGIDSTKSMDPEATMKPSVAKEWSNKDVVDNLKNVVNVLMTRGVHGLYIYAENSKLRQKLMQL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015979_1	1.1\|28036\|37\|NC_015979\|PILER-CR	28036-28072	37	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28036-28072	0	1.0
NC_015979_1	1.2\|28098\|37\|NC_015979\|PILER-CR	28098-28134	37	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28098-28134	0	1.0
NC_015979_1	1.3\|28160\|36\|NC_015979\|PILER-CR	28160-28195	36	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28160-28195	0	1.0
NC_015979_1	1.4\|28221\|37\|NC_015979\|PILER-CR	28221-28257	37	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28221-28257	0	1.0
NC_015979_1	1.5\|28283\|36\|NC_015979\|PILER-CR	28283-28318	36	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28283-28318	0	1.0
NC_015979_1	1.6\|28344\|36\|NC_015979\|PILER-CR	28344-28379	36	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28344-28379	0	1.0
NC_015979_1	1.7\|28405\|36\|NC_015979\|PILER-CR	28405-28440	36	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28405-28440	0	1.0
NC_015979_1	1.8\|28466\|37\|NC_015979\|PILER-CR	28466-28502	37	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28466-28502	0	1.0
NC_015979_1	1.9\|28528\|37\|NC_015979\|PILER-CR	28528-28564	37	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28528-28564	0	1.0
NC_015979_1	1.10\|28590\|37\|NC_015979\|PILER-CR	28590-28626	37	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28590-28626	0	1.0
NC_015979_1	1.11\|28652\|36\|NC_015979\|PILER-CR	28652-28687	36	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28652-28687	0	1.0
NC_015979_1	1.12\|28713\|37\|NC_015979\|PILER-CR	28713-28749	37	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28713-28749	0	1.0
NC_015979_1	1.13\|28775\|37\|NC_015979\|PILER-CR	28775-28811	37	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28775-28811	0	1.0
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28837-28873	0	1.0
NC_015979_1	1.15\|28040\|33\|NC_015979\|CRISPRCasFinder	28040-28072	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28040-28072	0	1.0
NC_015979_1	1.16\|28102\|33\|NC_015979\|CRISPRCasFinder	28102-28134	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28102-28134	0	1.0
NC_015979_1	1.17\|28164\|32\|NC_015979\|CRISPRCasFinder	28164-28195	32	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28164-28195	0	1.0
NC_015979_1	1.18\|28225\|33\|NC_015979\|CRISPRCasFinder	28225-28257	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28225-28257	0	1.0
NC_015979_1	1.19\|28287\|32\|NC_015979\|CRISPRCasFinder	28287-28318	32	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28287-28318	0	1.0
NC_015979_1	1.20\|28348\|32\|NC_015979\|CRISPRCasFinder	28348-28379	32	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28348-28379	0	1.0
NC_015979_1	1.21\|28409\|32\|NC_015979\|CRISPRCasFinder	28409-28440	32	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28409-28440	0	1.0
NC_015979_1	1.22\|28470\|33\|NC_015979\|CRISPRCasFinder	28470-28502	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28470-28502	0	1.0
NC_015979_1	1.23\|28532\|33\|NC_015979\|CRISPRCasFinder	28532-28564	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28532-28564	0	1.0
NC_015979_1	1.24\|28594\|33\|NC_015979\|CRISPRCasFinder	28594-28626	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28594-28626	0	1.0
NC_015979_1	1.25\|28656\|32\|NC_015979\|CRISPRCasFinder	28656-28687	32	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28656-28687	0	1.0
NC_015979_1	1.26\|28717\|33\|NC_015979\|CRISPRCasFinder	28717-28749	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28717-28749	0	1.0
NC_015979_1	1.27\|28779\|33\|NC_015979\|CRISPRCasFinder	28779-28811	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28779-28811	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_KX579977	Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence	9866-9898	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	MK784777	Enterococcus faecalis strain E211 plasmid pE211-2, complete sequence	41002-41034	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016745	Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence	481-513	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016749	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1C, complete sequence	487-519	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016751	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence	481-513	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_016750	Streptococcus macedonicus ACA-DC 198 plasmid pSMA198, complete sequence	481-513	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28841-28873	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP047629	Lactococcus raffinolactis strain Lr_19_14 plasmid pLraf_19_14_1, complete sequence	5150-5182	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_019308	Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence	487-519	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_019351	Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence	21708-21740	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP030043	Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence	12132-12164	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	MK465704	Enterococcus faecium strain E211 plasmid pE211-2, complete sequence	56646-56678	0	1.0
NC_015979_1	1.29\|28039\|34\|NC_015979\|CRT	28039-28072	34	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28039-28072	0	1.0
NC_015979_1	1.30\|28101\|34\|NC_015979\|CRT	28101-28134	34	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28101-28134	0	1.0
NC_015979_1	1.31\|28163\|33\|NC_015979\|CRT	28163-28195	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28163-28195	0	1.0
NC_015979_1	1.32\|28224\|34\|NC_015979\|CRT	28224-28257	34	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28224-28257	0	1.0
NC_015979_1	1.33\|28286\|33\|NC_015979\|CRT	28286-28318	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28286-28318	0	1.0
NC_015979_1	1.34\|28347\|33\|NC_015979\|CRT	28347-28379	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28347-28379	0	1.0
NC_015979_1	1.35\|28408\|33\|NC_015979\|CRT	28408-28440	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28408-28440	0	1.0
NC_015979_1	1.36\|28469\|34\|NC_015979\|CRT	28469-28502	34	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28469-28502	0	1.0
NC_015979_1	1.37\|28531\|34\|NC_015979\|CRT	28531-28564	34	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28531-28564	0	1.0
NC_015979_1	1.38\|28593\|34\|NC_015979\|CRT	28593-28626	34	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28593-28626	0	1.0
NC_015979_1	1.39\|28655\|33\|NC_015979\|CRT	28655-28687	33	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28655-28687	0	1.0
NC_015979_1	1.40\|28716\|34\|NC_015979\|CRT	28716-28749	34	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28716-28749	0	1.0
NC_015979_1	1.41\|28778\|34\|NC_015979\|CRT	28778-28811	34	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28778-28811	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_KX579977	Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence	9865-9898	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016745	Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence	480-513	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016749	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1C, complete sequence	486-519	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016751	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence	480-513	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_016750	Streptococcus macedonicus ACA-DC 198 plasmid pSMA198, complete sequence	480-513	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	28840-28873	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP047629	Lactococcus raffinolactis strain Lr_19_14 plasmid pLraf_19_14_1, complete sequence	5149-5182	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_019308	Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence	486-519	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_019351	Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence	21707-21740	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP030043	Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence	12131-12164	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	MK784777	Enterococcus faecalis strain E211 plasmid pE211-2, complete sequence	41002-41035	0	1.0
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	MK465704	Enterococcus faecium strain E211 plasmid pE211-2, complete sequence	56646-56679	0	1.0
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP043519	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_07, complete sequence	5302-5334	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016743	Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2B, complete sequence	10115-10147	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_013551	Lactococcus lactis plasmid pSK11B, complete sequence	11334-11366	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	CP016713	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77A, complete sequence	529-561	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016740	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3D, complete sequence	481-513	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016741	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3E, complete sequence	481-513	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	CP029293	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6	108268-108300	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_004652	Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pS7a, complete sequence	2247-2279	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_008503	Lactococcus lactis subsp. cremoris SK11 plasmid 1, complete sequence	7137-7169	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016700	Lactococcus lactis subsp. lactis strain 275 plasmid p275B, complete sequence	52614-52646	1	0.97
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_016970	Lactococcus garvieae 21881 plasmid pGL3 complete sequence	1801-1833	1	0.97
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	CP016713	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77A, complete sequence	528-561	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016740	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3D, complete sequence	480-513	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016741	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3E, complete sequence	480-513	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	CP029293	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6	108267-108300	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_004652	Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pS7a, complete sequence	2246-2279	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016700	Lactococcus lactis subsp. lactis strain 275 plasmid p275B, complete sequence	52613-52646	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_016970	Lactococcus garvieae 21881 plasmid pGL3 complete sequence	1800-1833	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP043519	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_07, complete sequence	5302-5335	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016743	Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2B, complete sequence	10115-10148	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_013551	Lactococcus lactis plasmid pSK11B, complete sequence	11334-11367	1	0.971
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_008503	Lactococcus lactis subsp. cremoris SK11 plasmid 1, complete sequence	7137-7170	1	0.971
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_LR135375	Enterococcus faecium isolate E8172 plasmid 4	16643-16675	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_014508	Enterococcus faecalis plasmid pEF-01, complete sequence	26692-26724	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_002748	Lactococcus lactis subsp. lactis strain MJC15 plasmid pCD4, complete sequence	2555-2587	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_009751	Lactococcus lactis subsp. lactis K214 plasmid pK214, complete sequence	4716-4748	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_KT717888	Enterococcus faecalis strain 5ZG10E plasmid pE30, complete sequence	472-504	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_019436	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence	472-504	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP015499	Lactobacillus helveticus strain FAM22155 plasmid pFAM22155, complete sequence	5541-5573	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	LN846933	Carnobacterium maltaromaticum strain LMA28 LMA_pb plasmid, complete genome	1125-1157	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	CP034573	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence	35090-35122	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_AP018503	Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence	13320-13352	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP031541	Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107C, complete sequence	472-504	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_023913	Enterococcus faecalis strain CPPF5 plasmid pCPPF5, complete sequence	9406-9438	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016695	Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence	472-504	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP028840	Enterococcus faecalis strain FC plasmid unnamed5, complete sequence	6435-6467	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	CP029292	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5	672-704	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016848	Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-4, complete sequence	425-457	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP051520	Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence	19953-19985	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP025421	Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence	3109-3141	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP025421	Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence	15769-15801	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016688	Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence	472-504	2	0.939
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_CP016735	Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence	517-549	2	0.939
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_LR135375	Enterococcus faecium isolate E8172 plasmid 4	16642-16675	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_002748	Lactococcus lactis subsp. lactis strain MJC15 plasmid pCD4, complete sequence	2554-2587	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_009751	Lactococcus lactis subsp. lactis K214 plasmid pK214, complete sequence	4715-4748	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_KT717888	Enterococcus faecalis strain 5ZG10E plasmid pE30, complete sequence	471-504	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_019436	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence	471-504	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP015499	Lactobacillus helveticus strain FAM22155 plasmid pFAM22155, complete sequence	5540-5573	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	CP034573	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence	35089-35122	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP031541	Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107C, complete sequence	471-504	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016695	Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence	471-504	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP028840	Enterococcus faecalis strain FC plasmid unnamed5, complete sequence	6434-6467	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP051520	Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence	19952-19985	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016688	Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence	471-504	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016735	Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence	516-549	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_014508	Enterococcus faecalis plasmid pEF-01, complete sequence	26692-26725	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	LN846933	Carnobacterium maltaromaticum strain LMA28 LMA_pb plasmid, complete genome	1125-1158	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_AP018503	Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence	13320-13353	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_023913	Enterococcus faecalis strain CPPF5 plasmid pCPPF5, complete sequence	9406-9439	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	CP029292	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5	672-705	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP016848	Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-4, complete sequence	425-458	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP025421	Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence	3109-3142	2	0.941
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_CP025421	Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence	15769-15802	2	0.941
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_KX579977	Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence	9862-9898	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016745	Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence	477-513	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016749	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1C, complete sequence	483-519	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016751	Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence	477-513	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_016750	Streptococcus macedonicus ACA-DC 198 plasmid pSMA198, complete sequence	477-513	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP047629	Lactococcus raffinolactis strain Lr_19_14 plasmid pLraf_19_14_1, complete sequence	5146-5182	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_019308	Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence	483-519	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_019351	Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence	21704-21740	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP030043	Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence	12128-12164	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	MK784777	Enterococcus faecalis strain E211 plasmid pE211-2, complete sequence	41002-41038	3	0.919
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	MK465704	Enterococcus faecium strain E211 plasmid pE211-2, complete sequence	56646-56682	3	0.919
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NZ_KM007159	Lactococcus garvieae strain IPLA 31405 plasmid pLG9, complete sequence	6324-6356	3	0.909
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_015864	Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence	506-538	3	0.909
NC_015979_1	1.28\|28841\|33\|NC_015979\|CRISPRCasFinder	28841-28873	33	NC_002137	Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence	2391-2423	3	0.909
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NZ_KM007159	Lactococcus garvieae strain IPLA 31405 plasmid pLG9, complete sequence	6323-6356	3	0.912
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_015864	Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence	505-538	3	0.912
NC_015979_1	1.42\|28840\|34\|NC_015979\|CRT	28840-28873	34	NC_002137	Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence	2391-2424	3	0.912
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	CP016713	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77A, complete sequence	525-561	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016740	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3D, complete sequence	477-513	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016741	Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3E, complete sequence	477-513	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	CP029293	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6	108264-108300	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_004652	Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pS7a, complete sequence	2243-2279	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016700	Lactococcus lactis subsp. lactis strain 275 plasmid p275B, complete sequence	52610-52646	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_016970	Lactococcus garvieae 21881 plasmid pGL3 complete sequence	1797-1833	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP043519	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_07, complete sequence	5302-5338	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016743	Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2B, complete sequence	10115-10151	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_013551	Lactococcus lactis plasmid pSK11B, complete sequence	11334-11370	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_008503	Lactococcus lactis subsp. cremoris SK11 plasmid 1, complete sequence	7137-7173	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_KT717888	Enterococcus faecalis strain 5ZG10E plasmid pE30, complete sequence	468-504	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_019436	Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence	468-504	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP015499	Lactobacillus helveticus strain FAM22155 plasmid pFAM22155, complete sequence	5537-5573	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	CP034573	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence	35086-35122	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP031541	Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107C, complete sequence	468-504	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016695	Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence	468-504	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP028840	Enterococcus faecalis strain FC plasmid unnamed5, complete sequence	6431-6467	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP051520	Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence	19949-19985	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016688	Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence	468-504	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_014508	Enterococcus faecalis plasmid pEF-01, complete sequence	26692-26728	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_AP018503	Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence	13320-13356	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_023913	Enterococcus faecalis strain CPPF5 plasmid pCPPF5, complete sequence	9406-9442	4	0.892
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_LR135375	Enterococcus faecium isolate E8172 plasmid 4	16639-16675	5	0.865
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_002748	Lactococcus lactis subsp. lactis strain MJC15 plasmid pCD4, complete sequence	2551-2587	5	0.865
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_009751	Lactococcus lactis subsp. lactis K214 plasmid pK214, complete sequence	4712-4748	5	0.865
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016735	Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence	513-549	5	0.865
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	LN846933	Carnobacterium maltaromaticum strain LMA28 LMA_pb plasmid, complete genome	1125-1161	5	0.865
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	CP029292	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5	672-708	5	0.865
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP016848	Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-4, complete sequence	425-461	5	0.865
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP025421	Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence	3109-3145	5	0.865
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_CP025421	Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence	15769-15805	5	0.865
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NZ_KM007159	Lactococcus garvieae strain IPLA 31405 plasmid pLG9, complete sequence	6320-6356	6	0.838
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_015864	Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence	502-538	6	0.838
NC_015979_1	1.14\|28837\|37\|NC_015979\|PILER-CR	28837-28873	37	NC_002137	Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence	2391-2427	6	0.838
NC_015979_1	1.16\|28102\|33\|NC_015979\|CRISPRCasFinder	28102-28134	33	NZ_LR723671	Rhizobium flavum strain YW14 plasmid 2	224884-224916	7	0.788
NC_015979_1	1.30\|28101\|34\|NC_015979\|CRT	28101-28134	34	NZ_LR723671	Rhizobium flavum strain YW14 plasmid 2	224884-224917	8	0.765
NC_015979_1	1.20\|28348\|32\|NC_015979\|CRISPRCasFinder	28348-28379	32	AP014167	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61A-MedDCM-OCT-S26-C30, * SEQUENCING IN PROGRESS *	27763-27794	9	0.719
NC_015979_1	1.20\|28348\|32\|NC_015979\|CRISPRCasFinder	28348-28379	32	AP014168	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61A-MedDCM-OCT-S34-C2, * SEQUENCING IN PROGRESS *	14167-14198	9	0.719
NC_015979_1	1.20\|28348\|32\|NC_015979\|CRISPRCasFinder	28348-28379	32	AP014166	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61-MedDCM-OCT-S46-C82, * SEQUENCING IN PROGRESS *	3145-3176	9	0.719
NC_015979_1	1.24\|28594\|33\|NC_015979\|CRISPRCasFinder	28594-28626	33	MK448386	Streptococcus satellite phage Javan256, complete genome	5255-5287	9	0.727
NC_015979_1	1.21\|28409\|32\|NC_015979\|CRISPRCasFinder	28409-28440	32	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	60056-60087	10	0.688
NC_015979_1	1.38\|28593\|34\|NC_015979\|CRT	28593-28626	34	MK448386	Streptococcus satellite phage Javan256, complete genome	5254-5287	10	0.706

1. spacer 1.1|28036|37|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcccacggcacactcgtattctggataggcttttttg	CRISPR spacer
tcccacggcacactcgtattctggataggcttttttg	Protospacer
*************************************

2. spacer 1.2|28098|37|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctggaattgacggctaccatgcttctgccgacatg	CRISPR spacer
tcctggaattgacggctaccatgcttctgccgacatg	Protospacer
*************************************

3. spacer 1.3|28160|36|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcccgtcccacgcaagtcagtcgcaaattgtacacg	CRISPR spacer
tcccgtcccacgcaagtcagtcgcaaattgtacacg	Protospacer
************************************

4. spacer 1.4|28221|37|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctcaagtcttgcgaatcattcaatccttcgccttg	CRISPR spacer
tcctcaagtcttgcgaatcattcaatccttcgccttg	Protospacer
*************************************

5. spacer 1.5|28283|36|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctttcttcatgtttctgctcggctgtggctctaa	CRISPR spacer
tcctttcttcatgtttctgctcggctgtggctctaa	Protospacer
************************************

6. spacer 1.6|28344|36|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctatcatggcgatgaatttgaaactcaaaaatta	CRISPR spacer
tcctatcatggcgatgaatttgaaactcaaaaatta	Protospacer
************************************

7. spacer 1.7|28405|36|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctatctttttttcgtgttcaaaaaattcctttcc	CRISPR spacer
tcctatctttttttcgtgttcaaaaaattcctttcc	Protospacer
************************************

8. spacer 1.8|28466|37|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tccttaacagttctcatggtattttgagatatacata	CRISPR spacer
tccttaacagttctcatggtattttgagatatacata	Protospacer
*************************************

9. spacer 1.9|28528|37|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctactacttgaaatgacgtacctacaaaaccgatg	CRISPR spacer
tcctactacttgaaatgacgtacctacaaaaccgatg	Protospacer
*************************************

10. spacer 1.10|28590|37|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctaaaattgaaaaacttgaagaagcacttgttaga	CRISPR spacer
tcctaaaattgaaaaacttgaagaagcacttgttaga	Protospacer
*************************************

11. spacer 1.11|28652|36|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctactcataaaacaagcctacaagttgaatttga	CRISPR spacer
tcctactcataaaacaagcctacaagttgaatttga	Protospacer
************************************

12. spacer 1.12|28713|37|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctataaatgtaatgaaaagtgagagggggcttaaa	CRISPR spacer
tcctataaatgtaatgaaaagtgagagggggcttaaa	Protospacer
*************************************

13. spacer 1.13|28775|37|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctaaatttttcagttcacgcttttggctttcatca	CRISPR spacer
tcctaaatttttcagttcacgcttttggctttcatca	Protospacer
*************************************

14. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tcctagcaagtacagcattatcttatatcgttggtta	Protospacer
*************************************

15. spacer 1.15|28040|33|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

acggcacactcgtattctggataggcttttttg	CRISPR spacer
acggcacactcgtattctggataggcttttttg	Protospacer
*********************************

16. spacer 1.16|28102|33|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

ggaattgacggctaccatgcttctgccgacatg	CRISPR spacer
ggaattgacggctaccatgcttctgccgacatg	Protospacer
*********************************

17. spacer 1.17|28164|32|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

gtcccacgcaagtcagtcgcaaattgtacacg	CRISPR spacer
gtcccacgcaagtcagtcgcaaattgtacacg	Protospacer
********************************

18. spacer 1.18|28225|33|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

caagtcttgcgaatcattcaatccttcgccttg	CRISPR spacer
caagtcttgcgaatcattcaatccttcgccttg	Protospacer
*********************************

19. spacer 1.19|28287|32|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

ttcttcatgtttctgctcggctgtggctctaa	CRISPR spacer
ttcttcatgtttctgctcggctgtggctctaa	Protospacer
********************************

20. spacer 1.20|28348|32|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

atcatggcgatgaatttgaaactcaaaaatta	CRISPR spacer
atcatggcgatgaatttgaaactcaaaaatta	Protospacer
********************************

21. spacer 1.21|28409|32|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

atctttttttcgtgttcaaaaaattcctttcc	CRISPR spacer
atctttttttcgtgttcaaaaaattcctttcc	Protospacer
********************************

22. spacer 1.22|28470|33|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

taacagttctcatggtattttgagatatacata	CRISPR spacer
taacagttctcatggtattttgagatatacata	Protospacer
*********************************

23. spacer 1.23|28532|33|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

actacttgaaatgacgtacctacaaaaccgatg	CRISPR spacer
actacttgaaatgacgtacctacaaaaccgatg	Protospacer
*********************************

24. spacer 1.24|28594|33|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaattgaaaaacttgaagaagcacttgttaga	CRISPR spacer
aaaattgaaaaacttgaagaagcacttgttaga	Protospacer
*********************************

25. spacer 1.25|28656|32|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

actcataaaacaagcctacaagttgaatttga	CRISPR spacer
actcataaaacaagcctacaagttgaatttga	Protospacer
********************************

26. spacer 1.26|28717|33|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

ataaatgtaatgaaaagtgagagggggcttaaa	CRISPR spacer
ataaatgtaatgaaaagtgagagggggcttaaa	Protospacer
*********************************

27. spacer 1.27|28779|33|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

aaatttttcagttcacgcttttggctttcatca	CRISPR spacer
aaatttttcagttcacgcttttggctttcatca	Protospacer
*********************************

28. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_KX579977 (Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

29. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to MK784777 (Enterococcus faecalis strain E211 plasmid pE211-2, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

30. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016745 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

31. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016749 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1C, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

32. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016751 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

33. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_016750 (Streptococcus macedonicus ACA-DC 198 plasmid pSMA198, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

34. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

35. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP047629 (Lactococcus raffinolactis strain Lr_19_14 plasmid pLraf_19_14_1, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

36. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_019308 (Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

37. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_019351 (Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

38. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP030043 (Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

39. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to MK465704 (Enterococcus faecium strain E211 plasmid pE211-2, complete sequence) position: , mismatch: 0, identity: 1.0

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttatatcgttggtta	Protospacer
*********************************

40. spacer 1.29|28039|34|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

cacggcacactcgtattctggataggcttttttg	CRISPR spacer
cacggcacactcgtattctggataggcttttttg	Protospacer
**********************************

41. spacer 1.30|28101|34|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tggaattgacggctaccatgcttctgccgacatg	CRISPR spacer
tggaattgacggctaccatgcttctgccgacatg	Protospacer
**********************************

42. spacer 1.31|28163|33|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

cgtcccacgcaagtcagtcgcaaattgtacacg	CRISPR spacer
cgtcccacgcaagtcagtcgcaaattgtacacg	Protospacer
*********************************

43. spacer 1.32|28224|34|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tcaagtcttgcgaatcattcaatccttcgccttg	CRISPR spacer
tcaagtcttgcgaatcattcaatccttcgccttg	Protospacer
**********************************

44. spacer 1.33|28286|33|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tttcttcatgtttctgctcggctgtggctctaa	CRISPR spacer
tttcttcatgtttctgctcggctgtggctctaa	Protospacer
*********************************

45. spacer 1.34|28347|33|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tatcatggcgatgaatttgaaactcaaaaatta	CRISPR spacer
tatcatggcgatgaatttgaaactcaaaaatta	Protospacer
*********************************

46. spacer 1.35|28408|33|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tatctttttttcgtgttcaaaaaattcctttcc	CRISPR spacer
tatctttttttcgtgttcaaaaaattcctttcc	Protospacer
*********************************

47. spacer 1.36|28469|34|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

ttaacagttctcatggtattttgagatatacata	CRISPR spacer
ttaacagttctcatggtattttgagatatacata	Protospacer
**********************************

48. spacer 1.37|28531|34|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tactacttgaaatgacgtacctacaaaaccgatg	CRISPR spacer
tactacttgaaatgacgtacctacaaaaccgatg	Protospacer
**********************************

49. spacer 1.38|28593|34|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

taaaattgaaaaacttgaagaagcacttgttaga	CRISPR spacer
taaaattgaaaaacttgaagaagcacttgttaga	Protospacer
**********************************

50. spacer 1.39|28655|33|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tactcataaaacaagcctacaagttgaatttga	CRISPR spacer
tactcataaaacaagcctacaagttgaatttga	Protospacer
*********************************

51. spacer 1.40|28716|34|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tataaatgtaatgaaaagtgagagggggcttaaa	CRISPR spacer
tataaatgtaatgaaaagtgagagggggcttaaa	Protospacer
**********************************

52. spacer 1.41|28778|34|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

taaatttttcagttcacgcttttggctttcatca	CRISPR spacer
taaatttttcagttcacgcttttggctttcatca	Protospacer
**********************************

53. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_KX579977 (Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

54. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016745 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

55. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016749 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1C, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

56. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016751 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

57. spacer 1.42|28840|34|NC_015979|CRT matches to NC_016750 (Streptococcus macedonicus ACA-DC 198 plasmid pSMA198, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

58. spacer 1.42|28840|34|NC_015979|CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

59. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP047629 (Lactococcus raffinolactis strain Lr_19_14 plasmid pLraf_19_14_1, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

60. spacer 1.42|28840|34|NC_015979|CRT matches to NC_019308 (Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

61. spacer 1.42|28840|34|NC_015979|CRT matches to NC_019351 (Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

62. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP030043 (Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

63. spacer 1.42|28840|34|NC_015979|CRT matches to MK784777 (Enterococcus faecalis strain E211 plasmid pE211-2, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

64. spacer 1.42|28840|34|NC_015979|CRT matches to MK465704 (Enterococcus faecium strain E211 plasmid pE211-2, complete sequence) position: , mismatch: 0, identity: 1.0

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttatatcgttggtta	Protospacer
**********************************

65. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP043519 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_07, complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggtta	Protospacer
********************.************

66. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016743 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2B, complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggtta	Protospacer
********************.************

67. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_013551 (Lactococcus lactis plasmid pSK11B, complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggtta	Protospacer
********************.************

68. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to CP016713 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77A, complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggtta	Protospacer
********************.************

69. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016740 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3D, complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggtta	Protospacer
********************.************

70. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016741 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3E, complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggtta	Protospacer
********************.************

71. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to CP029293 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaaatacagcattatcttatatcgttggtta	Protospacer
*****.***************************

72. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_004652 (Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pS7a, complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggtta	Protospacer
********************.************

73. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_008503 (Lactococcus lactis subsp. cremoris SK11 plasmid 1, complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggtta	Protospacer
********************.************

74. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016700 (Lactococcus lactis subsp. lactis strain 275 plasmid p275B, complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaaatacagcattatcttatatcgttggtta	Protospacer
*****.***************************

75. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_016970 (Lactococcus garvieae 21881 plasmid pGL3 complete sequence) position: , mismatch: 1, identity: 0.97

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggtta	Protospacer
********************.************

76. spacer 1.42|28840|34|NC_015979|CRT matches to CP016713 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77A, complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggtta	Protospacer
*********************.************

77. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016740 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3D, complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggtta	Protospacer
*********************.************

78. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016741 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3E, complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggtta	Protospacer
*********************.************

79. spacer 1.42|28840|34|NC_015979|CRT matches to CP029293 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaaatacagcattatcttatatcgttggtta	Protospacer
******.***************************

80. spacer 1.42|28840|34|NC_015979|CRT matches to NC_004652 (Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pS7a, complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggtta	Protospacer
*********************.************

81. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016700 (Lactococcus lactis subsp. lactis strain 275 plasmid p275B, complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaaatacagcattatcttatatcgttggtta	Protospacer
******.***************************

82. spacer 1.42|28840|34|NC_015979|CRT matches to NC_016970 (Lactococcus garvieae 21881 plasmid pGL3 complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggtta	Protospacer
*********************.************

83. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP043519 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_07, complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggtta	Protospacer
*********************.************

84. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016743 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2B, complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggtta	Protospacer
*********************.************

85. spacer 1.42|28840|34|NC_015979|CRT matches to NC_013551 (Lactococcus lactis plasmid pSK11B, complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggtta	Protospacer
*********************.************

86. spacer 1.42|28840|34|NC_015979|CRT matches to NC_008503 (Lactococcus lactis subsp. cremoris SK11 plasmid 1, complete sequence) position: , mismatch: 1, identity: 0.971

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggtta	Protospacer
*********************.************

87. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_LR135375 (Enterococcus faecium isolate E8172 plasmid 4) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcgttggttg	Protospacer
********************.***********.

88. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_014508 (Enterococcus faecalis plasmid pEF-01, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

89. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_002748 (Lactococcus lactis subsp. lactis strain MJC15 plasmid pCD4, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtatagcattatcttgtatcgttggtta	Protospacer
********.***********.************

90. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_009751 (Lactococcus lactis subsp. lactis K214 plasmid pK214, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcggtggtta	Protospacer
********************.***** ******

91. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_KT717888 (Enterococcus faecalis strain 5ZG10E plasmid pE30, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

92. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_019436 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

93. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP015499 (Lactobacillus helveticus strain FAM22155 plasmid pFAM22155, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

94. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to LN846933 (Carnobacterium maltaromaticum strain LMA28 LMA_pb plasmid, complete genome) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtaccgttggtta	Protospacer
********************.**.*********

95. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to CP034573 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

96. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_AP018503 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

97. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP031541 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107C, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

98. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_023913 (Enterococcus faecalis strain CPPF5 plasmid pCPPF5, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

99. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016695 (Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

100. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP028840 (Enterococcus faecalis strain FC plasmid unnamed5, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

101. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to CP029292 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcggtggtta	Protospacer
********************.***** ******

102. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016848 (Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-4, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtaccgttggtta	Protospacer
********************.**.*********

103. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP051520 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

104. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP025421 (Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtatagcattatcttgtatcgttggtta	Protospacer
********.***********.************

105. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP025421 (Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtatagcattatcttgtatcgttggtta	Protospacer
********.***********.************

106. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016688 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagtcttatcttatatcgttggtta	Protospacer
***********. ********************

107. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_CP016735 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence) position: , mismatch: 2, identity: 0.939

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagcattatcttgtatcggtggtta	Protospacer
********************.***** ******

108. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_LR135375 (Enterococcus faecium isolate E8172 plasmid 4) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcgttggttg	Protospacer
*********************.***********.

109. spacer 1.42|28840|34|NC_015979|CRT matches to NC_002748 (Lactococcus lactis subsp. lactis strain MJC15 plasmid pCD4, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtatagcattatcttgtatcgttggtta	Protospacer
*********.***********.************

110. spacer 1.42|28840|34|NC_015979|CRT matches to NC_009751 (Lactococcus lactis subsp. lactis K214 plasmid pK214, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcggtggtta	Protospacer
*********************.***** ******

111. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_KT717888 (Enterococcus faecalis strain 5ZG10E plasmid pE30, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

112. spacer 1.42|28840|34|NC_015979|CRT matches to NC_019436 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

113. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP015499 (Lactobacillus helveticus strain FAM22155 plasmid pFAM22155, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

114. spacer 1.42|28840|34|NC_015979|CRT matches to CP034573 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

115. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP031541 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107C, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

116. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016695 (Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

117. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP028840 (Enterococcus faecalis strain FC plasmid unnamed5, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

118. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP051520 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

119. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016688 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

120. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016735 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcggtggtta	Protospacer
*********************.***** ******

121. spacer 1.42|28840|34|NC_015979|CRT matches to NC_014508 (Enterococcus faecalis plasmid pEF-01, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

122. spacer 1.42|28840|34|NC_015979|CRT matches to LN846933 (Carnobacterium maltaromaticum strain LMA28 LMA_pb plasmid, complete genome) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtaccgttggtta	Protospacer
*********************.**.*********

123. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_AP018503 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

124. spacer 1.42|28840|34|NC_015979|CRT matches to NC_023913 (Enterococcus faecalis strain CPPF5 plasmid pCPPF5, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagtcttatcttatatcgttggtta	Protospacer
************. ********************

125. spacer 1.42|28840|34|NC_015979|CRT matches to CP029292 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtatcggtggtta	Protospacer
*********************.***** ******

126. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP016848 (Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-4, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagcattatcttgtaccgttggtta	Protospacer
*********************.**.*********

127. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP025421 (Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtatagcattatcttgtatcgttggtta	Protospacer
*********.***********.************

128. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_CP025421 (Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.941

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtatagcattatcttgtatcgttggtta	Protospacer
*********.***********.************

129. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_KX579977 (Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
aaatagcaagtacagcattatcttatatcgttggtta	Protospacer
   **********************************

130. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016745 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttatatcgttggtta	Protospacer
.  **********************************

131. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016749 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1C, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttatatcgttggtta	Protospacer
.  **********************************

132. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016751 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1E, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttatatcgttggtta	Protospacer
.  **********************************

133. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_016750 (Streptococcus macedonicus ACA-DC 198 plasmid pSMA198, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
aaatagcaagtacagcattatcttatatcgttggtta	Protospacer
   **********************************

134. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP047629 (Lactococcus raffinolactis strain Lr_19_14 plasmid pLraf_19_14_1, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttatatcgttggtta	Protospacer
.  **********************************

135. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_019308 (Lactococcus lactis subsp. lactis plasmid pIL6, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttatatcgttggtta	Protospacer
.  **********************************

136. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_019351 (Lactococcus lactis subsp. cremoris plasmid pAF22, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttatatcgttggtta	Protospacer
.  **********************************

137. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP030043 (Enterococcus faecalis strain C25 plasmid pC25-1, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
aaatagcaagtacagcattatcttatatcgttggtta	Protospacer
   **********************************

138. spacer 1.14|28837|37|NC_015979|PILER-CR matches to MK784777 (Enterococcus faecalis strain E211 plasmid pE211-2, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
aaatagcaagtacagcattatcttatatcgttggtta	Protospacer
   **********************************

139. spacer 1.14|28837|37|NC_015979|PILER-CR matches to MK465704 (Enterococcus faecium strain E211 plasmid pE211-2, complete sequence) position: , mismatch: 3, identity: 0.919

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
aaatagcaagtacagcattatcttatatcgttggtta	Protospacer
   **********************************

140. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NZ_KM007159 (Lactococcus garvieae strain IPLA 31405 plasmid pLG9, complete sequence) position: , mismatch: 3, identity: 0.909

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagccttatcttataccgttggttg	Protospacer
************ **********.********.

141. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_015864 (Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence) position: , mismatch: 3, identity: 0.909

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagccttatcttataccgttggttg	Protospacer
************ **********.********.

142. spacer 1.28|28841|33|NC_015979|CRISPRCasFinder matches to NC_002137 (Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence) position: , mismatch: 3, identity: 0.909

agcaagtacagcattatcttatatcgttggtta	CRISPR spacer
agcaagtacagccttatcttataccgttggttg	Protospacer
************ **********.********.

143. spacer 1.42|28840|34|NC_015979|CRT matches to NZ_KM007159 (Lactococcus garvieae strain IPLA 31405 plasmid pLG9, complete sequence) position: , mismatch: 3, identity: 0.912

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagccttatcttataccgttggttg	Protospacer
************* **********.********.

144. spacer 1.42|28840|34|NC_015979|CRT matches to NC_015864 (Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence) position: , mismatch: 3, identity: 0.912

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagccttatcttataccgttggttg	Protospacer
************* **********.********.

145. spacer 1.42|28840|34|NC_015979|CRT matches to NC_002137 (Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence) position: , mismatch: 3, identity: 0.912

tagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
tagcaagtacagccttatcttataccgttggttg	Protospacer
************* **********.********.

146. spacer 1.14|28837|37|NC_015979|PILER-CR matches to CP016713 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77A, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
gaatagcaagtacagcattatcttgtatcgttggtta	Protospacer
   *********************.************

147. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016740 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3D, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtatcgttggtta	Protospacer
.  *********************.************

148. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016741 (Lactococcus lactis subsp. cremoris strain JM3 plasmid pJM3E, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtatcgttggtta	Protospacer
.  *********************.************

149. spacer 1.14|28837|37|NC_015979|PILER-CR matches to CP029293 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed6) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaaatacagcattatcttatatcgttggtta	Protospacer
.  ******.***************************

150. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_004652 (Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pS7a, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
gaatagcaagtacagcattatcttgtatcgttggtta	Protospacer
   *********************.************

151. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016700 (Lactococcus lactis subsp. lactis strain 275 plasmid p275B, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaaatacagcattatcttatatcgttggtta	Protospacer
.  ******.***************************

152. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_016970 (Lactococcus garvieae 21881 plasmid pGL3 complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
gaatagcaagtacagcattatcttgtatcgttggtta	Protospacer
   *********************.************

153. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP043519 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_07, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
gaatagcaagtacagcattatcttgtatcgttggtta	Protospacer
   *********************.************

154. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016743 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pJM2B, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtatcgttggtta	Protospacer
.  *********************.************

155. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_013551 (Lactococcus lactis plasmid pSK11B, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtatcgttggtta	Protospacer
.  *********************.************

156. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_008503 (Lactococcus lactis subsp. cremoris SK11 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtatcgttggtta	Protospacer
.  *********************.************

157. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_KT717888 (Enterococcus faecalis strain 5ZG10E plasmid pE30, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

158. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_019436 (Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS6, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

159. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP015499 (Lactobacillus helveticus strain FAM22155 plasmid pFAM22155, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

160. spacer 1.14|28837|37|NC_015979|PILER-CR matches to CP034573 (Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

161. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP031541 (Lactococcus lactis subsp. cremoris strain 3107 plasmid p3107C, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

162. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016695 (Lactococcus lactis subsp. lactis strain 229 plasmid p229B, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

163. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP028840 (Enterococcus faecalis strain FC plasmid unnamed5, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

164. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP051520 (Lactococcus lactis subsp. cremoris strain F plasmid pScrF33, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

165. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016688 (Lactococcus lactis subsp. cremoris strain 158 plasmid p158D, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

166. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_014508 (Enterococcus faecalis plasmid pEF-01, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

167. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_AP018503 (Lactococcus lactis subsp. cremoris strain C4 plasmid pC44, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

168. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_023913 (Enterococcus faecalis strain CPPF5 plasmid pCPPF5, complete sequence) position: , mismatch: 4, identity: 0.892

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
taatagcaagtacagtcttatcttatatcgttggtta	Protospacer
*  ************. ********************

169. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_LR135375 (Enterococcus faecium isolate E8172 plasmid 4) position: , mismatch: 5, identity: 0.865

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtatcgttggttg	Protospacer
.  *********************.***********.

170. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_002748 (Lactococcus lactis subsp. lactis strain MJC15 plasmid pCD4, complete sequence) position: , mismatch: 5, identity: 0.865

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
gaatagcaagtatagcattatcttgtatcgttggtta	Protospacer
   *********.***********.************

171. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_009751 (Lactococcus lactis subsp. lactis K214 plasmid pK214, complete sequence) position: , mismatch: 5, identity: 0.865

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtatcggtggtta	Protospacer
.  *********************.***** ******

172. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016735 (Lactococcus lactis subsp. lactis strain UC06 plasmid pUC06B, complete sequence) position: , mismatch: 5, identity: 0.865

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtatcggtggtta	Protospacer
.  *********************.***** ******

173. spacer 1.14|28837|37|NC_015979|PILER-CR matches to LN846933 (Carnobacterium maltaromaticum strain LMA28 LMA_pb plasmid, complete genome) position: , mismatch: 5, identity: 0.865

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtaccgttggtta	Protospacer
.  *********************.**.*********

174. spacer 1.14|28837|37|NC_015979|PILER-CR matches to CP029292 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed5) position: , mismatch: 5, identity: 0.865

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtatcggtggtta	Protospacer
.  *********************.***** ******

175. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP016848 (Carnobacterium maltaromaticum strain TMW 2.1581 plasmid pL21581-4, complete sequence) position: , mismatch: 5, identity: 0.865

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagcattatcttgtaccgttggtta	Protospacer
.  *********************.**.*********

176. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP025421 (Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.865

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
gaatagcaagtatagcattatcttgtatcgttggtta	Protospacer
   *********.***********.************

177. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_CP025421 (Streptococcus parauberis strain SPOF3K plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.865

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
gaatagcaagtatagcattatcttgtatcgttggtta	Protospacer
   *********.***********.************

178. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NZ_KM007159 (Lactococcus garvieae strain IPLA 31405 plasmid pLG9, complete sequence) position: , mismatch: 6, identity: 0.838

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagccttatcttataccgttggttg	Protospacer
.  ************* **********.********.

179. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_015864 (Lactococcus lactis subsp. lactis plasmid pIL7, complete sequence) position: , mismatch: 6, identity: 0.838

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagccttatcttataccgttggttg	Protospacer
.  ************* **********.********.

180. spacer 1.14|28837|37|NC_015979|PILER-CR matches to NC_002137 (Lactococcus lactis cremoris NIZO B40 plasmid pNZ4000, complete sequence) position: , mismatch: 6, identity: 0.838

tcctagcaagtacagcattatcttatatcgttggtta	CRISPR spacer
caatagcaagtacagccttatcttataccgttggttg	Protospacer
.  ************* **********.********.

181. spacer 1.16|28102|33|NC_015979|CRISPRCasFinder matches to NZ_LR723671 (Rhizobium flavum strain YW14 plasmid 2) position: , mismatch: 7, identity: 0.788

ggaattgacggctaccatgcttctgccgacatg---	CRISPR spacer
ggaattgaccgcttccatgcttct---gatctgcga	Protospacer
********* *** **********   **. **

182. spacer 1.30|28101|34|NC_015979|CRT matches to NZ_LR723671 (Rhizobium flavum strain YW14 plasmid 2) position: , mismatch: 8, identity: 0.765

tggaattgacggctaccatgcttctgccgacatg---	CRISPR spacer
cggaattgaccgcttccatgcttct---gatctgcga	Protospacer
.********* *** **********   **. **

183. spacer 1.20|28348|32|NC_015979|CRISPRCasFinder matches to AP014167 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61A-MedDCM-OCT-S26-C30, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

atcatggcgatgaatttgaaactcaaaaatta	CRISPR spacer
acaatggcgatgaatttaaaacacaattacct	Protospacer
*. **************.**** ***  *..

184. spacer 1.20|28348|32|NC_015979|CRISPRCasFinder matches to AP014168 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61A-MedDCM-OCT-S34-C2, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

atcatggcgatgaatttgaaactcaaaaatta	CRISPR spacer
acaatggcgatgaatttaaaacacaattacct	Protospacer
*. **************.**** ***  *..

185. spacer 1.20|28348|32|NC_015979|CRISPRCasFinder matches to AP014166 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C61-MedDCM-OCT-S46-C82, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

atcatggcgatgaatttgaaactcaaaaatta	CRISPR spacer
acaatggcgatgaatttaaaacacaattacct	Protospacer
*. **************.**** ***  *..

186. spacer 1.24|28594|33|NC_015979|CRISPRCasFinder matches to MK448386 (Streptococcus satellite phage Javan256, complete genome) position: , mismatch: 9, identity: 0.727

aaaattgaaaaacttgaagaagcacttgttaga	CRISPR spacer
atttttgaaaaacttaaagaagcatttggggaa	Protospacer
*   ***********.********.***  ..*

187. spacer 1.21|28409|32|NC_015979|CRISPRCasFinder matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atctttttttcgtgttcaaaaaattcctttcc	CRISPR spacer
gcctttttttcgtgtacagaaaattgtcgttt	Protospacer
..************* **.****** .. *..

188. spacer 1.38|28593|34|NC_015979|CRT matches to MK448386 (Streptococcus satellite phage Javan256, complete genome) position: , mismatch: 10, identity: 0.706

taaaattgaaaaacttgaagaagcacttgttaga	CRISPR spacer
aatttttgaaaaacttaaagaagcatttggggaa	Protospacer
 *   ***********.********.***  ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9892 : 18605

Bacillus_virus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014082567.1\|9892_10249_+	CrcB family protein	A0A2H4J148	uncultured_Caudovirales_phage	1.6e-06	40.7
WP_041818216.1\|11079_11664_+	recombinase family protein	M9Q1K0	Clostridium_phage	2.2e-18	39.5
WP_014082570.1\|12004_12553_-	cysteine hydrolase	G3MA16	Bacillus_virus	4.5e-29	42.4
WP_014082571.1\|12554_13994_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.2e-98	42.7
WP_014082572.1\|14109_14814_-	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	6.9e-06	31.1
WP_014082573.1\|15223_16153_-\|transposase	IS30 family transposase	H7BW47	unidentified_phage	6.7e-25	34.1
WP_041818220.1\|16256_16673_+	MFS transporter	NA	NA	NA	NA
WP_014082574.1\|16825_18160_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.0e-29	27.4
WP_049777660.1\|18230_18605_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.4e-15	43.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015978

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015979

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection