CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015977	Roseburia hominis A2-183, complete sequence	13 crisprs	PD-DExK,WYL,DEDDh,RT,csa3,DinG,cas3,cas2,cas1,cas4,cas7,cas8c,cas5	1	37	2	0

1. NC_015977

CRISPR-Cas detection and classification

Crispr_ID: NC_015977_1

• CRISPR_ID: NC_015977_1
• CRISPR_location: 469112-469354
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of NC_015977_1

Consensus_repeat	Method
GGAGAAGCACCGAGCGGAGAAGCACCG	CRISPRCasFinder

spacers of NC_015977_1

>1.1|469139|30|NC_015977|CRISPRCasFinder
AGCGGAGAAGCACCGGGCGGAGACGACAGT
>1.2|469196|18|NC_015977|CRISPRCasFinder
GGCGGAGAAGCACCGAGC
>1.3|469241|30|NC_015977|CRISPRCasFinder
GGAAACGGAGCGCCGGGAGAAGCGCCAAGT
>1.4|469298|30|NC_015977|CRISPRCasFinder
AGCGGAGACAACAGCGGAAACGGAGCGCCG

CRISPR arrays and Neighbor proteins around NC_015977_1

CRISPR arrays

The CRISPR arrays of NC_015977_1

>merge|NC_015977|1|469112-469354|CRISPRCasFinder
AATGGAGCACCGGGCGGAGAAGCACCGAGCGGAGAAGCACCGGGCGGAGACGACAGTGGAAACGGAGCGCCGGGAGAAGCACCGGGCGGAGAAGCACCGAGCGGAGAAGCACCGGGCGGAGACGACAGTGGAAACGGAGCGCCGGGAGAAGCGCCAAGTGGAGAAGCACCGGGCGGAGAAGCACCGAGCGGAGACAACAGCGGAAACGGAGCGCCGGGGGAAGCACCAAGCGGAGACGCACTG

>NC_015977|1|1|469112-469354|CRISPRCasFinder
AATGGAGCACCGGGCGGAGAAGCACCG	AGCGGAGAAGCACCGGGCGGAGACGACAGT
GGAAACGGAGCGCCGGGAGAAGCACCG	GGCGGAGAAGCACCGAGC
GGAGAAGCACCGGGCGGAGACGACAGT	GGAAACGGAGCGCCGGGAGAAGCGCCAAGT
GGAGAAGCACCGGGCGGAGAAGCACCG	AGCGGAGACAACAGCGGAAACGGAGCGCCG
GGGGAAGCACCAAGCGGAGACGCACTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014078608.1|479026_479263_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078609.1|479331_481083_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|227203
NC_015977.1|WP_014078606.1|477949_478711_+|pyruvate-formate-lyase-activating-protein	unknown	unknown	gnl|CDD|131546
NC_015977.1|WP_014078595.1|466929_467247_+|thioredoxin	unknown	unknown	gnl|CDD|200072
NC_015977.1|WP_014078587.1|463389_463629_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078590.1|464894_465392_-|AEC-family-transporter	unknown	unknown	gnl|CDD|223751
NC_015977.1|WP_014078601.1|471534_472086_+|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|240048
NC_015977.1|WP_014078610.1|481201_481732_+|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl|CDD|238308
NC_015977.1|WP_044024586.1|466039_466918_+|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|223566
NC_015977.1|WP_081467943.1|463985_464207_+|DUF4160-domain-containing-protein	unknown	unknown	gnl|CDD|379344
NC_015977.1|WP_014078605.1|475576_477805_+|formate-C-acetyltransferase	unknown	unknown	gnl|CDD|153087
NC_015977.1|WP_014078607.1|478735_478957_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078588.1|464220_464496_+|DUF2442-domain-containing-protein	unknown	unknown	gnl|CDD|378424
NC_015977.1|WP_014078604.1|474256_475174_+|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl|CDD|143635
NC_015977.1|WP_044024782.1|473143_474070_+|tRNA-dihydrouridine-synthase-family-protein	unknown	unknown	gnl|CDD|239200
NC_015977.1|WP_014078602.1|472111_472969_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078586.1|462499_463270_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078597.1|467493_467934_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NC_015977.1|WP_014078598.1|468015_468357_+|DUF4234-domain-containing-protein	unknown	unknown	gnl|CDD|379421
NC_015977.1|WP_014078599.1|468374_468761_+|DUF2752-domain-containing-protein	unknown	unknown	gnl|CDD|378499

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014078609.1|479331_481083_+|GNAT-family-N-acetyltransferase	gnl|CDD|227203	COG4866, COG4866, Uncharacterized conserved protein [Function unknown].	9.99226e-58
NC_015977.1|WP_014078606.1|477949_478711_+|pyruvate-formate-lyase-activating-protein	gnl|CDD|131546	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue. [Energy metabolism, Anaerobic, Protein fate, Protein modification and repair].	2.55952e-106
NC_015977.1|WP_014078595.1|466929_467247_+|thioredoxin	gnl|CDD|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.10938e-32
NC_015977.1|WP_044024782.1|473143_474070_+|tRNA-dihydrouridine-synthase-family-protein	gnl|CDD|239200	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.	2.79764e-53
NC_015977.1|WP_014078601.1|471534_472086_+|NUDIX-domain-containing-protein	gnl|CDD|240048	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	9.13784e-50
NC_015977.1|WP_014078610.1|481201_481732_+|ribosome-associated-translation-inhibitor-RaiA	gnl|CDD|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	7.7957e-32
NC_015977.1|WP_044024586.1|466039_466918_+|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	1.29185e-63
NC_015977.1|WP_081467943.1|463985_464207_+|DUF4160-domain-containing-protein	gnl|CDD|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	2.57246e-26
NC_015977.1|WP_014078605.1|475576_477805_+|formate-C-acetyltransferase	gnl|CDD|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NC_015977.1|WP_014078588.1|464220_464496_+|DUF2442-domain-containing-protein	gnl|CDD|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	2.53522e-07
NC_015977.1|WP_014078604.1|474256_475174_+|sensor-domain-containing-diguanylate-cyclase	gnl|CDD|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.30909e-45
NC_015977.1|WP_014078590.1|464894_465392_-|AEC-family-transporter	gnl|CDD|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.02882e-10
NC_015977.1|WP_014078597.1|467493_467934_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.87741e-24
NC_015977.1|WP_014078598.1|468015_468357_+|DUF4234-domain-containing-protein	gnl|CDD|379421	pfam14018, DUF4234, Domain of unknown function (DUF4234). This presumed integral membrane protein domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 70 amino acids in length.	4.16041e-27
NC_015977.1|WP_014078599.1|468374_468761_+|DUF2752-domain-containing-protein	gnl|CDD|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	6.90135e-12

Protein sequences

>NC_015977.1|WP_014078599.1|468374_468761_+|DUF2752-domain-containing-protein
MTKKARLKKLLLYMMLLGMAGLLYGIFVSYTGLAIPCLFRKVTGLLCPGCGVTGMCVALLHLDWRGAFSCHPVLFVLLLPLTAVFICGAAGYVQNGRFRFARWQNLILYVSVAALVIFGVVRNLVRFL
>NC_015977.1|WP_014078598.1|468015_468357_+|DUF4234-domain-containing-protein
MIERRNIAVCIVLTLVTCGIYGIYWIVCLTNDVNTVSGDVNGTSGGMVVLLTIVTCGIYGIYWAYKQGEKLDFTKNNRGIPSSNSGVLYLILQIFGFGIIAYALMQNELNKLA
>NC_015977.1|WP_014078597.1|467493_467934_+|MarR-family-transcriptional-regulator
MKDKYDALKLENQLCFPLYACSKEIVRRYKPYLDEIDLTYTQYIAMMVLWEHGRINVKDMGALLYLDSGTLTPVLKKLEQKGYLTRERDHADERVLNVTITEAGEQLKEQAVDIPRKMGGCIGLSGEDARELYRILHKVLALMEQE
>NC_015977.1|WP_014078595.1|466929_467247_+|thioredoxin
MVKKIQNNNMDEALQAKAAVVDFSAVWCGPCQMLAPVLEELADDLDGEVAFYNADTDENTQLAIANGITNIPALLFLKDGKVAGKNVGFMPKPELEAWVKGCMEQ
>NC_015977.1|WP_044024586.1|466039_466918_+|NAD(P)/FAD-dependent-oxidoreductase
MENGMERVDIAIIGTGPAGVSAAITAKVRNKSVLLIGSRELSEKMSKAHQILNYPGLPEVSGADLVAGYKKQLAGLGIEVTEKRVNAVYAMGDYFGIQASGEILEASTVILAAGIVMGKPFPGENKLLGSGVSYCATCDAQFFRGKEVAVIGYGREAEQEADYLAEIVGKVHYFPMGKEEPQLSDAVEVVHERPKAITGTQTVSALETDAGSHPVDGVFILRDAIAPSQLVPGLATEENHVKVNLQMETNLPGLFACGDITGKPYQYIKAAGQGNVAALSAAEYLDKKKREI
>NC_015977.1|WP_014078590.1|464894_465392_-|AEC-family-transporter
MISIALGAVLFFAQIHLPEILNNTLSIVGNMIGPASMIVTGMLFAGMDLKKIFGNKRVYIISSLRMIVIPLIALALIKLSRIAALSSDAPKIMLIVFLAMITPSASTVTQICQVYGNDAKYASAINVVTTLCAIVTMPLMVLLYTYINHRFSILHTFFPPFACST
>NC_015977.1|WP_014078588.1|464220_464496_+|DUF2442-domain-containing-protein
MFPKVVQVVPMKDYTVYVYFEDGKIVCYDMKNMLDKEIFKPLKDISVFTDTCTVMNDTLAWDISGNRDACKCIDIDPDTLYELPYCKEKIA
>NC_015977.1|WP_081467943.1|463985_464207_+|DUF4160-domain-containing-protein
MYYDDHNPPHFHAEYNGNKAIIEIDTARCIKGALPSRQLKLILAWCVLHQDELMQNWELSKDGKPLNRINPLV
>NC_015977.1|WP_014078587.1|463389_463629_-|hypothetical-protein
MKKYFAYYNQYKNGIDIAFDDNVLLFISCSESEKDLHTTPNSQRLIDNLAIDEPLKYAALALDGELQAWADAMDEDWCF
>NC_015977.1|WP_014078586.1|462499_463270_+|hypothetical-protein
MIFKKNQSKRFHITSIIIGVLLVTVGTIIYSLLYKNKVEGFSYENITYMTACIEVIMLGIVLVLINFENNLHGKLVLVITGFLIAGFIFNKSFRFGIILFVGTMFAYFITMRFKNIFSTVVTMSVCATIFLVLAIFALKLVDENYGILVLYCMFSLFIVVYRILGKIINQWFINKMLGFEEESKTYDDEQLKNQILLIYMLIFVCLNVWLYQEKIDSETWNLINNSFLTGLAIIQMDWKKIVFYFSKTSNVTEKES
>NC_015977.1|WP_014078601.1|471534_472086_+|NUDIX-domain-containing-protein
MELLDIVDEKGNPTGETVPREVAHREGIRHRTAHVWIFRRRGGVVQILLQKRSDNKDSDPGCYDISSAGHIPAGSDYIPSAVRELKEELGVDMNGDELIYCGQRRFRFEREFHGSMFRDNQVSNVYALWLDREEEAFVLQEEEVSEVRWMDFADCVSAVRENRISHCIYMEELELLKNALHLH
>NC_015977.1|WP_014078602.1|472111_472969_-|hypothetical-protein
MKSTFSDSPGNHNRWFRPHFSHFCATRLGRFINESRYGGILYLALWLVVLGLVFTLFQTIFLSIAYTGRLTPDDYEVLHVEQTEYDQSIGAYDSGIIRRFSDYLVTVQYEVDGTRYTADLSLGQAFFTGNRVARAGADGSSVLGTIFYKSSDPKRLKYIPARRHILPFSTGKYVCREDTDDFAAQVCALLQQEDYGSLAALSYNGRDIPVTAEDTEEYFHDDLVYFRKNVGDLSLLEGTTVYHDTPWATAVTIRYYSKEAQETYSDYLPITVKDGHYRLDLRWKY
>NC_015977.1|WP_044024782.1|473143_474070_+|tRNA-dihydrouridine-synthase-family-protein
MAPMEGVTGYVYRNAYAKYYGGIERYFTPFVANKKLGHREKNDVCPEHNAGMAVVPQILTNRAEDFLAIAEILREYGYDTVNLNLGCPSGTVAARGRGAGFLAMPDELDHFLEEIFEKCPLRISIKTRIGKENPAEWERLLAIYEKYPLEELIVHPRVQTDFYKNRVNLEAFARAEKNSRHSLCYNGDIVDAASAAHIREGFPSVDKFMIGRGLIKHPWLLEELSGGRQEKQERKERFFRFHNAILEGYRQQMSGDKNTLFKMKELWAYWGENFADADQRLKKIRKCERVAEYECLVDALFREKELCV
>NC_015977.1|WP_014078604.1|474256_475174_+|sensor-domain-containing-diguanylate-cyclase
MESYTLEEKVLRKVMRNIPMGLIVSKEGFRRKIYYVNDTACEIMGYTREEYIRKMQDGWTDLMDVDLREVIREHNEQIRSGTPFEVLSRPQTKNGGYKWILSRVNVQMQEGPLCYVSFMDVTDRMEREELCRQENEVLREQAMQDSFTKLLNRGALEKHVCEALQERGGDEEDAFILLDVDNFKQINDIYGHGVGDMILMRMAGILNEVFGDHSCIGRMGGDEFAVFLRDIGDRREIEEKIQKLLTEVRAEKERMHLSKEPTASVGVAFVPESGSTFVDVYRAADQALYHVKNSTKNGMAFYDFV
>NC_015977.1|WP_014078605.1|475576_477805_+|formate-C-acetyltransferase
MQNEWRGFQRGSWEEEINVRDFIQKNYTPYDGDDSFLEGPTQDTTDLWNEVLELSKQEREAGGVLDMDTKIISTITSHGPGYLDKSKEKIVGFQTDKPFKRSLQPYGGIRMAVKACEDNGYHVDPEVVEYFTTHRKTHNAGVFDAYTPEMRACRSAHIITGLPDAYGRGRIIGDYRRPALYGVDRLIEDKEEQLATTRTIMYSDVIREREELSEQIRALKMLKELAKIYGCDISKPANNVLEATQAVYFSYLAAVKEQNGAAMSLGRTSTFLDIYAERDLKERTFTEKEIQEIIDQFVMKLRCVKFARTPEYNSIFAGDPTWVTESIGGIGVDGRHMVTKMSYRYLNTLNNIGAAPEPNMTVLWSVQLPENFKRFCAQTSIRHSAIQYENDDIMRVVHGDDYGIACCVSSMRIGKEMQFFGARANLAKCLLYAINGGVDEISGKQVGPKYRPITSEYLDYDEVWDKYKDMMKWLAGVYVNALNIIHYMHDKYCYEKLEMALHDKKVRRWFATGIAGFSVVADSLSAIKYAKVKPIRDENGITVDFEVEGDFPKYGNDDDRVDDIAKEVLHTFIGYVKGNHTYRGGIPTTSILTITSNVSYGKNTGATPDGRKKGVAFAPGANPMHGRDTNGAVASLASVAKMPFMDSQDGISNTFTIVPDALGKDEKGEEQNLVALLDAYVEKGGHHLNVNVLNRETLLDAQKHPEQYPQLTIRVSGYAVNFIKLTKEQQDEVIARTFHERM
>NC_015977.1|WP_014078606.1|477949_478711_+|pyruvate-formate-lyase-activating-protein
MGKIHSMESFGTVDGPGVRFVVFFEGCPMRCLYCHNPDTWHLEDGQEMSAEEILSRMERNRSFYRTGGITATGGEPMLQIDFLTELFAGAKERGIHTCLDTSGIMFPGCGGTSEEERERLKKVDLLLSVTDLVMLDIKHMDAEEHRKLTGQDNEKILAFARYLDEKQIPVWIRHVVVPGITFQREELEALGRFLATLSNVEKLEVLPYHSMGKVKYDNLGIDYALKDTPQLTKAEAKSAESIILEAMRQARNV
>NC_015977.1|WP_014078607.1|478735_478957_+|hypothetical-protein
MIEKVHEVNDAASNMAAITEEQSASAEKIEATAVSIQELAEIVSENSADVQKDSKEMENTAETLKEHISRFTI
>NC_015977.1|WP_014078608.1|479026_479263_+|hypothetical-protein
MKIKNITDIDGFFKVIDSCQGKVELITGEGDRLNLKSKLCQYVSLTSILKTDVEIPELELVAYEPEDTEKIIKFLMKG
>NC_015977.1|WP_014078609.1|479331_481083_+|GNAT-family-N-acetyltransferase
MKPEETVFHEITLQDKAWMDQKFAEDDRNACEYSFANNFMWRNVYQVRVAELHGCLVVRFIDGEIHCFSFPVGNGDKKAAVEELLAICHEEGIQLLIAPASEQDRAQMLEWFPGRFLIEGDRNDYDYIYAREKLATLAGKKLHGKRNHIARFKDSGDWSYEPMTAENIEECRTMTYTWIHMREEKWNEEMNQEISVLHEAFDHMQELGLVGGVLRRDGQIVAFSIGERLNSETFVVHFEKAYPDLQGAYPMINQQFVLHECEGYAYVNREEDTGDPGLRKAKLSYYPDILLPKYELEESGVVYADPKRDAPYIQEIWQKCFGDEEDYIQFYLKHRMTRENMLVIFRDGRPVAMASFLPVQYLCNGAYVDARYVYAVATLPEYRGQKLAEQILRFAEEKYQVPLILSPAEESLIRYYENLGFKNAFQGERKNVSGSDITALEVKDTEPVACMEPVTPEEYVRIRDEKCAKEGYVHWDVDAVSYAMELAASCGGGTAAVSCEDKNTRNEQEDDRDILMYDIREKELVILETTLSDDALSQVLPQLMEETGTSAASYGRERGMIWLPKTMADLPVAGDGYLALTLG
>NC_015977.1|WP_014078610.1|481201_481732_+|ribosome-associated-translation-inhibitor-RaiA
MRIKITGRNIELTEGLKAAVEDKLNKLEKYFTPDTDVYVTLSVEKERQKAEVTIPAKGNYIRSEQVSNDMYVSIDLVEEVIERQLKKYRTKLVTKQQNASAVFKQEFLDGAADEDEEIKIIRTKKFSMKPMYPEDACVQMELLGHDFFVFINAETEDVNVVYKRKGNTYGLIEPEN

Crispr_ID: NC_015977_2

• CRISPR_ID: NC_015977_2
• CRISPR_location: 645150-645242
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_2

Consensus_repeat	Method
TTCAAGTCCTGTTACCCGCAGTAGAGCAGGAGA	CRISPRCasFinder

spacers of NC_015977_2

>2.1|645183|27|NC_015977|CRISPRCasFinder
AAAGTGGAAGACAGGACTTGAACCTTT

CRISPR arrays and Neighbor proteins around NC_015977_2

CRISPR arrays

The CRISPR arrays of NC_015977_2

>merge|NC_015977|2|645150-645242|CRISPRCasFinder
TTCAAGTCCTGTTACCCGCAGTAGAGCAGGAGAAAAGTGGAAGACAGGACTTGAACCTTTTCAAGCTCCTGTTACCCGCAGTAGAGCAGGAGA

>NC_015977|2|2|645150-645242|CRISPRCasFinder
TTCAAGTCCTGTTACCCGCAGTAGAGCAGGAGA	AAAGTGGAAGACAGGACTTGAACCTTT
TCAAGCTCCTGTTACCCGCAGTAGAGCAGGAGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_044024797.1|650211_651972_+|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173869
NC_015977.1|WP_014078768.1|652432_653032_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078762.1|646028_646940_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223674
NC_015977.1|WP_014078750.1|634664_636944_+|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl|CDD|237999
NC_015977.1|WP_014078769.1|653089_655384_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|173853
NC_015977.1|WP_014078770.1|655551_656538_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|223674
NC_015977.1|WP_014078758.1|642424_642904_+|metallophosphoesterase	unknown	unknown	gnl|CDD|223695
NC_015977.1|WP_014078763.1|646964_648041_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|224094
NC_015977.1|WP_014078754.1|639040_640747_+|cell-surface-protein	unknown	unknown	gnl|CDD|375986
NC_015977.1|WP_014078759.1|643843_644422_+|folate-family-ECF-transporter-S-component	unknown	unknown	gnl|CDD|275311
NC_015977.1|WP_014078752.1|637510_637807_+|rhodanese-like-domain-containing-protein	unknown	unknown	gnl|CDD|238089
NC_015977.1|WP_014078751.1|637200_637383_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078749.1|633387_634626_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl|CDD|235513
NC_015977.1|WP_014078771.1|656553_658218_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|224094
NC_015977.1|WP_014078760.1|644711_645005_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078761.1|645419_645719_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078764.1|648053_649061_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|223521
NC_015977.1|WP_014078753.1|637871_639044_+|class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl|CDD|223194
NC_015977.1|WP_014078757.1|641827_642421_+|XTP/dITP-diphosphatase	unknown	unknown	gnl|CDD|376602
NC_015977.1|WP_014078765.1|649060_650101_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|185037

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_044024797.1|650211_651972_+|peptide-ABC-transporter-substrate-binding-protein	gnl|CDD|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	9.32389e-167
NC_015977.1|WP_014078762.1|646028_646940_+|ABC-transporter-permease	gnl|CDD|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.74945e-114
NC_015977.1|WP_014078750.1|634664_636944_+|cyclic-nucleotide-binding-domain-containing-protein	gnl|CDD|237999	cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels.	5.9436e-05
NC_015977.1|WP_014078769.1|653089_655384_+|ABC-transporter-substrate-binding-protein	gnl|CDD|173853	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Similar to the ABC-type dipeptide and oligopeptide import systems, nickel transporter is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, which is the initial nickel receptor that controls the chemotactic response away from nickel. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand binding domains of ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.18149e-42
NC_015977.1|WP_014078770.1|655551_656538_+|ABC-transporter-permease	gnl|CDD|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.23549e-109
NC_015977.1|WP_014078758.1|642424_642904_+|metallophosphoesterase	gnl|CDD|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	1.90516e-39
NC_015977.1|WP_014078763.1|646964_648041_+|ABC-transporter-permease	gnl|CDD|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.75013e-91
NC_015977.1|WP_014078754.1|639040_640747_+|cell-surface-protein	gnl|CDD|375986	pfam18560, Lectin_like, Lectin like domain. This is a lectin like domain found in Cwp84, a surface-located cysteine protease (a member of the C1A cysteine protease family, also known as papain proteases) responsible for the maturation of the SlpA precursor protein which has been implicated in the degradation of extracellular matrix proteins such as fibronectin, laminin and vitronectin. Structural comparison indicates that this domain is similar to carbohydrate-binding domains.	1.86433e-67
NC_015977.1|WP_014078759.1|643843_644422_+|folate-family-ECF-transporter-S-component	gnl|CDD|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	8.54059e-31
NC_015977.1|WP_014078752.1|637510_637807_+|rhodanese-like-domain-containing-protein	gnl|CDD|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.11642e-21
NC_015977.1|WP_014078749.1|633387_634626_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl|CDD|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NC_015977.1|WP_014078771.1|656553_658218_+|ABC-transporter-permease	gnl|CDD|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.56822e-90
NC_015977.1|WP_014078764.1|648053_649061_+|ABC-transporter-ATP-binding-protein	gnl|CDD|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.55961e-177
NC_015977.1|WP_014078753.1|637871_639044_+|class-I-SAM-dependent-RNA-methyltransferase	gnl|CDD|223194	COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair].	3.86783e-147
NC_015977.1|WP_014078757.1|641827_642421_+|XTP/dITP-diphosphatase	gnl|CDD|376602	pfam01725, Ham1p_like, Ham1 family. This family consists of the HAM1 protein and hypothetical archaeal bacterial and C. elegans proteins. HAM1 controls 6-N-hydroxylaminopurine (HAP) sensitivity and mutagenesis in S. cerevisiae. The HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions.	5.53775e-95
NC_015977.1|WP_014078765.1|649060_650101_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	2.80385e-136

Protein sequences

>NC_015977.1|WP_014078760.1|644711_645005_+|hypothetical-protein
MKSRRIPLESEVDKYEVGKGMEDGFELFSDVVTKGWIVTDSLVKIERPDGTIVCPYIKHRRGRTFIGEGDYIIVQQDGTKNVCGADKVWTRYEKPEA
>NC_015977.1|WP_014078759.1|643843_644422_+|folate-family-ECF-transporter-S-component
MKKFVALFTDSYRELKSVRTITTMAMLAAIAIILGMFSIEYGNFIRIGFSSIPNGIIAYLFGPTVGGIFSGTLDIIKYILKPTGPFCPQLTLVTMLAGVMYGCMYYKKKLTLPRVLATKFIVMLVCNVFLNTLCLTVLYGQAFMVILPARALKNLIMWPIDSVIFFATAKALESIGAFRFVRRAQAERIARS
>NC_015977.1|WP_014078758.1|642424_642904_+|metallophosphoesterase
MKILVVSDTHRKLENLKVILEREQPMDLLIHLGDAEGDEDSIAEMAGCRLEIVAGNNDFFSNLPREKELRIGSYRVLITHGHYYYVSAGIADIEREAAAQGYDIVMFGHTHRPVIDYTRDVIALNPGSLSYPRQEGRRPSYIVMDLDKNGKANFEIKYL
>NC_015977.1|WP_014078757.1|641827_642421_+|XTP/dITP-diphosphatase
MRIIFATGNAGKMREIREIMADMDMEICSMKEAGISLDIEENGTTFEENAQIKAKAVAACTKDIVLADDSGLEVDYLNKEPGVYSARYLGEDTSYDIKNQAILDRLKGVPKEQRTARFVCAIAAVLPDGKTLVTRETIEGYIGECPAGENGFGYDPIFYVDEYHCSTAELTEEQKNEISHRGKALRSMKKLLHEYGF
>NC_015977.1|WP_014078754.1|639040_640747_+|cell-surface-protein
MKYSKRYIVFGVLVAAMLIFKLEPGASGSGTVENFRGANLQAATWNPLIASSVNDNLLSLVIDNKEYTNENHTFYMDDQLNIMVPVNILRDALNCSAHVYDGKRLLVEKHANEVEFSLGASEAKVNGTREVIVSPFIRKDDTYYVSLNDLANYLDYSYSWDIQENQASAMDTSDSATIIPTRYDLREKGRAAAVRNQGTFGTCWAFAALGALESSLLPEEKLQFSVDHMTMNNGFTLTQDDGGEYTMGMAYLAAWEGPVYEADDPYGDNKTNPDLTAVKHVQEMQIIDGKDYEKIKESVFLYGGVQTSIYNGLRSSQSKSPYYNQKTNSYCYIGTEKPNHDVVIIGWDDSYSKENFNVDLEGDGAFICQNSWGDTFGEDGVFYISYYDTNIGTHNVVYTKIEEPGNYDHIYQSDLCGWVGQLGYNKDSAYGANVYTTSQEEELVAAGFYAIGKDSQYELYVVRNFEDAGSLTQRIPVASGKLSNAGYYTVDFNQAISLDAGERYAIVLHMITPGSVHPMAIEYAADEATADVILDDGESYISTNGARWDSVDTVEECNLCIKAFSKNR
>NC_015977.1|WP_014078753.1|637871_639044_+|class-I-SAM-dependent-RNA-methyltransferase
MKTYELVVPCHFGLEAVLKREIYDLGYEISRVEDGRVSFQGDAEAVCRANIFLRTAERVLIEVGRFRATTFEELFQGIKALPWEDYIPVNGKFWVKKASSIKSKLFSPSDIQSIAKKAMVERMKQHYDVEWFAEDGAPYPVRIFLLKDEVMVTLDTSGDSLHKRGYRTLTSKAPLTETLAASLLLLTPWRPDRILVDPFCGSGTFPIEAAMIAAGIAPGMNREFTAEQWTNLIDRKLWYECVKEAEEMIHTDVKVDIQGYDIDGDVIKAARENAKRAGVDHLIHFQQRPVAELHHPKKYGFIVTNPPYGERLEDKADLPKLYGEIGAAFRGLDSWSMYLITSYDEAERYIGRKADKNRKIYNGMLRTYFYQFMGPKPPRRSVRDTAGGDE
>NC_015977.1|WP_014078752.1|637510_637807_+|rhodanese-like-domain-containing-protein
MTFYTIHPRELEDIMRRKHGILIDVREADSYREYHYPNARNLPYEKIDQWMHRLPKNRPLVLYCDYGSTSLLAARKLGREGYEVYTVVGGIEAMRTSD
>NC_015977.1|WP_014078751.1|637200_637383_+|hypothetical-protein
MAKNESTQNSTSNCRDGYENSYENNAGSGSNSAKNKSTNKSTNKTSNVSGSNKTSDKYQQ
>NC_015977.1|WP_014078750.1|634664_636944_+|cyclic-nucleotide-binding-domain-containing-protein
MTTVKVQKNQIIAKQKEKVKKWYIVQEGTVIQCNSYAKIVLGKNAVIGISEGDRYLCDYVATEDSVLAVFNCESAEDLKEAIHGQESMRSILLRAALGQRQMLLRTYAGFTNLVRQFHSFAENEYSQYENLCAQYHLDEQSFTRMDNFKPLEMVHRAENWEIGNSASLTGSYLEEYVHLMQRDDNLCIGAIMEASYQTRRVTQGIIEMVEYLRYNQDILLAESKNDLFNLFFALAIQAQKKNYDVKPLLNEMDRIAEVIKKLGIYSGKLVDMRMEEYRGYHFETEGAAYETPQAQDGEEEEPQEERSEDCLVHILTYADTEQSVIEEMQELVQKYRDLPDMFSTDAQTFAIRKRITQIFYDTYLKAFMHTVKGEKELTPIVEMFLNFGFMDVQMAGEENANILFDLTEHLDVCKSDHVYTIFEWLRSVYDGRNEPSKNEFDMDYPAYLAEMRKTGKITTEQQKHFMSNRELKVKFEIQNMFTSGNRATYGKLSTFCPILGEYDLINSIEKMLVTAQKLDESLHKIRDIDFSAFYREVQFSDPDKGINREMIMKEIMPDIILMPNAGTRSMMWQETAGVRRDTSARFLFPIFTAVDIDDMMVDTVGRYRWEICRKIQGVHWNDIREKSLTAEYCDYLQFYRKNRELSAEAKEKIKSALLRGRNNYREVFVKDYQNWMKYESKGSYRLNKIAREILITYCPFAKPIREELKGNPMYESALHRLDLLNAKTVQRIQGVYDKYQKAGGRITQELTDNLEYYEL
>NC_015977.1|WP_014078749.1|633387_634626_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MNKQSEKPRGLLSGKTVLLCVTGGIAAYKMPNVARMLKKLGCNVHVLMTQNATNFITATTFETLTANKCLIDTFDRNFEFSVEHVALAKQADLVLIAPATANVIGKIANGIADDMLTTTVMACTCKCLIAPAMNHNMYHNPIVQDNIRKLEHYGYEMIEPVRGMLANGDTGDGKLPSEEELAEYVLRELAAPKDMAGLKILVTAGPTQEAIDPVRYITNHSTGKMGYAIARRAMYRGADVTLVTGPTACEPPRFVNVVPVVTAAQMYDAVMSRAKEQDIIVKAAAVADYRPASVAEEKIKKSDREASIELERTQDILAALGADKGKTILCGFSMETEHMLENSRKKLRKKNVDLIAANNLKVEGAGFGTDTNVLTLITEDGERELARMSKEEAADELLTELLIISKGRAKGQ
>NC_015977.1|WP_014078761.1|645419_645719_-|hypothetical-protein
MIQNDDILNMNFYKKEKFTGSYQGMRYLIQKDQEEDAEDENVKHDIFRVTIWPGPYNFASTADDLKSSAVFPFTPEGKEQVVDWLNEQWSARRTEWPGR
>NC_015977.1|WP_014078762.1|646028_646940_+|ABC-transporter-permease
MGKYIVKRVLLAIVSILIVSAITFFVMNIIPGGPFNKEKATSAEAQKVLEERYNLDKPIPEQYVIYMNNLLHGDWGVSLHSGRDIWGEISSRFKVSAKLGGMAALVAIVAGLVLGSIAALTRNHWPDRLIVFFTTLGTAMPSFVLATLLLLVFCLKLGWFPVWSSTSPNYVLPIIALSVYPMAYITRLTKTSMLDSLNQDYIRTARAKGVPGWKVIFKHALRNALIPVITYVGPMVAYILTGSMVVENIFTIGGLGSSFVTSITNRDYTMIMATTIFLAILMVVANLLTDIAYKFVDPRITFE
>NC_015977.1|WP_014078763.1|646964_648041_+|ABC-transporter-permease
MELKHRQILSAQVDLSKFNKANFEKATDEEKKQQDVMGESTTFFKDGMRRLRKNPLAMGSIIVLVLILLTIIIAPHICPYKYSEIISVNGVRDKSAANLGPFEYSKLETKYMNETGEKLFPHIFGTDSLSRDYFIRVIYGTRVSLSVGVVASIMVLIIGLLYGSIAGYFGGKVDLIMMRIVDIIYSLPDMLIIILLSVVFNETLKPLITGTVLEKLGTNMISMFIVFGLLYWVSMARLIRGQILSIKNNEYVLAARCIGTKNARILRRHILPNCLSVIIITTALQVPSAIFTESYLSFLGLGVSAPLTSLGSLANDARAGMQSYPLRLVIPAIAICLIVLALNLLGDGLRDAFDSKLN
>NC_015977.1|WP_014078764.1|648053_649061_+|ABC-transporter-ATP-binding-protein
MSEENKYILEVKDLHTSFFTDAGEVKAVNGISFNLEPGKTLGIVGESGSGKSVTAYSIMQILAETGKITGGEVRFHGEDITKWNSKQMQKFRGEKCSIIFQDPMTSLNPVFTVGSQLIEAILLHTDKNKKEAWARAVEMLTLVGVNEPESRMKQYPHELSGGMRQRVMIAMALVCEPDILIADEPTTALDVTIQAQILELMQDLQKKLGMAIIMVTHDLGVIASMCDEILVMYGGRVCERGTADDIFYRPAHEYTKGLLRSIPKADNMNEKLVPIGGTPINLLQMPAGCAFCPRCDAAMKICLSEKPEELRISDTHLASCWMNIKELYEAQEEAE
>NC_015977.1|WP_014078765.1|649060_650101_+|ATP-binding-cassette-domain-containing-protein
MSEEKNLLEVSHLKQYFPVHQGFKTIPLKAVDDISFAIKPGETLGLVGESGCGKTTVGRTLLRLYQPTAGRIVFDGKVLFDSGEQYDENGKLIVDANGKPVLGKKVDVDMLPYRRQMQMVFQDPYSSLNPRMTVEDIIGEPLDVHKLYANKKERREKILNLMELVGLNAEHAMRYAHEFSGGQRQRIGIARALAVNPKFIVCDEPVSALDVSIQAQVVNMFEELQDKLGVAYLFIAHDLLVVHHISDRIAVMYLGKMMEIADADELNGNPMHPYTLSLLSAVPIPDPETARHSKRIVLEGDVPSPLKMPTGCPFRTRCKYATEQCAKEMPPLSDRGSGHFVACWNK
>NC_015977.1|WP_044024797.1|650211_651972_+|peptide-ABC-transporter-substrate-binding-protein
MMKKLVASLLVASMALGLTACGGSSDSTASTGESTGTAAGTEAAATAEATTTNAETNVLNINLASEPDYLDPALNSSVDGGCLAVNSFAGLYTYDKDGNLIPALATDMPEVSEDGTEYTVHMIESKWSNGDDLKASDFVYSWNRVIDEKTAADYAYLFDVIDRNDDGTLAVETPDDYTLVIKLVSPCPYFNDLLAFPTFYPVHQASVEAADTDGTVPGKWAQEAGFVCNGAYTLESWNHNESMVYVKNPNFYDAANVTMDELHFMLSADDTAIYAAYNSGDLDYIDTVPNDEIPSLNGVNPEFGILDNLGTYYIGFNVNDPVFDGKTEEEAAKMREAISLLVDRQFIVENVGQTGQIPADSFVPEGMADGNGGVFKTADTSYYDATATGAGELETAKGLLEEAGYTFTDNGDGTYAVDPAISMTYLTNDGTAHIAVAESVQQDVALLGINLEIKSEDWNVFLEDRKSGNFTIAREGWLADYNDPVNMLEIFTSDSGNNDMQLGKGTPVSSSPDWTAYDELINQIRTTTDFAARVDLMHQAEDMLMDTWAVVPIYYYNDIYMQKSNVTGIYATIFGMKYFMYATKTA
>NC_015977.1|WP_014078768.1|652432_653032_+|hypothetical-protein
MQYGRQSDEAEAAMIKNPYQKDYQNELKQNRHGLLVTRTSYQGDFYVLPFDEQQKRRTGIFNVIWTIALWVIELGMGLLNPDSSRTAWIVFPYLFVILPLGYMLYGAVSYIGAPVRMHRAHYETGLLRMKRSCIGAMVLTGIGAVLDLVYMVLHRGGIRMGMECIYLICHFLFLAVAFFFGKYYDRNYSGILIENATME
>NC_015977.1|WP_014078769.1|653089_655384_+|ABC-transporter-substrate-binding-protein
MKKMRQTLALLLAGALTVGSFAGCGGSKAGGETAGTETAGTEAAGTAASGSDTPLVIANDGMSEKFSPFFAESVPDQNIVDVTQISLVYNDRSGEFIYNGIEGETTSYNGTDYTYYGPTDLTITENEDGTVYYDFKLRDDLTFSDGEPVTADDIIFSFYVFCDPTYDGGASVYSLPIEGMEEYRSGMSTLASLLAAAGEDNTDFTYWTEDQQNAFWDAVNDGGAAFAQEIVDYCVENGVSEEGDVAGAAAQWGFDGLAADATAKDFFMAIGDKYGWSFTAMEAESAGSALSDLIPEDVYAYATEGVETGDAAANISGIQKLDDKTVRVVLTEVSAPALQTMDIQITPLHYYGDESQYDYDNNQFGFTKGDLSAIREKTTAPLGAGPYVFKSYENKTVYLEANESYYKGAPATKELQFKETAEADKLPGVVQGTVDISDPSISKEVMAQICSENSNGEVSGDVLTTALYDNNGYGYIGINSQNVKVGDDPSSEQSKDLRKAIATVISVYRDMVIDSYYGEAAAVINYPISNTSWAAPQKSDADYEVAFSKDVDGNPIYTDGMSDDEKYAAALDAALGFFEAAGYTVTDGKLTAAPAGAKLSYEVMIGGGGKGDHPSFGILTAASEALKTIGFDLTINDLADGTIMWDALNSETAEMWCAAWQATLDPDMFQIYHSEGGSANYYAIYSDELDELVMEGRTNTDQAFRKAVYKEALDFIVDYAVEIPVYQRQNASVFSTQRVNVDSIPQDLTTFYSYLNEIEKIQMN
>NC_015977.1|WP_014078770.1|655551_656538_+|ABC-transporter-permease
MKKFVVKRVLLSIVILFFVSMIIYAIMRCMPSSFVEQQALTLSQRPGAKSYDEWVAQLNASYGLDTGVIQGYFRWAAKAIRGQFGDSWYFNQPVLTKFASVIWYSFALSLASFVLEIIIAIPAGIAAARKQYSATDYTITVIALVGISLPSFFVATLLKWVFSVKLGWFDLYGIVGRNFQSLSSGRQILDMAWHLVLPVITLTIVSIGSLMRYTRTNMLEVLNADYIRTARAKGLPEKRVIHYHAFRNILIPIITLLGGTLPGLFSGAMVTETLFQIPGIGYTSYQAVLQGDIPFVMFYMLFSAVLILLGNLIADILYAVVDPRVRVN
>NC_015977.1|WP_014078771.1|656553_658218_+|ABC-transporter-permease
MENEKNNMKLDDAQRVRVLSPGMMVAKRFFRNRLAIVGLVIIICMFLFAFVGGAVNPYSQSEVFYRTEEMKKDYAGAAKIDEFQVFAADGVELPSDVYSKMILAVTKNALVFETRDGQTLALGKIDDDTYHIYAAEQQMNPLALKSEEHDAAEAAGQNQFTYNGVEYVFDASGVKETLYTTTELGIACRKSVTAFDEGTTFSYDFYSKVLTAIANGDKNVEADGVNYTVENEGSAAMIHTADGADYAYVSDMSMNPVSSGIVLTPAFKEAAEAAMTAGENSFEYTDEQGETDTYLIKDKNGQYTIQRYQETRVIDSYAAPSAKHLCGTDGNGMDLLARLMYGGRISLMIGFVVVIIELIIGIIVGGIAGFFGGWVDTLLMRVVDVVYCIPAIPLYLILGSIMDYYKASAKTRIYMLCIVMSIIGWVSIARIIRGQILSLREQEFMTAAEATGIRVSRRIFRHLIPNVIPQLVVFASMGIGDVILAESTLSFLGLGIKYPAASWGSIINAVNDSYVMTNYLFVWVPAGVLILLTVLAYNFIGDGLRDAFDPKMKR

Crispr_ID: NC_015977_3

• CRISPR_ID: NC_015977_3
• CRISPR_location: 707664-707754
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_3

Consensus_repeat	Method
CCCGTGAGAAAAAAGCAGTACGAAGCCG	CRISPRCasFinder

spacers of NC_015977_3

>3.1|707692|35|NC_015977|CRISPRCasFinder
AATGAGAGAGGCGGAAGGGTGTACCGTGAAAAAAA

CRISPR arrays and Neighbor proteins around NC_015977_3

CRISPR arrays

The CRISPR arrays of NC_015977_3

>merge|NC_015977|3|707664-707754|CRISPRCasFinder
CCCGTGAGAAAAAAGCAGTACGAAGCCGAATGAGAGAGGCGGAAGGGTGTACCGTGAAAAAAACCCGTGAGAAAAAAGCAGTACGAAGCCG

>NC_015977|3|3|707664-707754|CRISPRCasFinder
CCCGTGAGAAAAAAGCAGTACGAAGCCG	AATGAGAGAGGCGGAAGGGTGTACCGTGAAAAAAA
CCCGTGAGAAAAAAGCAGTACGAAGCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014078811.1|700029_701790_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NC_015977.1|WP_014078828.1|713938_714535_+|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl|CDD|234770
NC_015977.1|WP_014078825.1|709688_710294_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl|CDD|178955
NC_015977.1|WP_014078814.1|703872_704100_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014078816.1|704702_705317_+|HAD-family-phosphatase	unknown	unknown	gnl|CDD|319790
NC_015977.1|WP_014078830.1|715769_717548_+|pyruvate-kinase	unknown	unknown	gnl|CDD|235784
NC_015977.1|WP_014078813.1|701904_703695_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NC_015977.1|WP_014078827.1|711607_713935_+|endopeptidase-La	unknown	unknown	gnl|CDD|223542
NC_015977.1|WP_014078831.1|718230_720696_-|glycosyl-transferase	unknown	unknown	gnl|CDD|225990
NC_015977.1|WP_014078810.1|699300_699522_-|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl|CDD|365990
NC_015977.1|WP_014078829.1|714810_715743_+|carbamate-kinase	unknown	unknown	gnl|CDD|237071
NC_015977.1|WP_014078826.1|710342_711602_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl|CDD|235422
NC_015977.1|WP_014078807.1|696032_696686_+|YesL-family-protein	unknown	unknown	gnl|CDD|377412
NC_015977.1|WP_014078806.1|694481_696002_+|alpha-N-arabinofuranosidase	unknown	unknown	gnl|CDD|226064
NC_015977.1|WP_014078820.1|705646_706198_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NC_015977.1|WP_014078815.1|704084_704606_+|cysteine-hydrolase	unknown	unknown	gnl|CDD|238245
NC_015977.1|WP_014078824.1|708239_709583_+|trigger-factor	unknown	unknown	gnl|CDD|234956
NC_015977.1|WP_014078832.1|721159_722179_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NC_015977.1|WP_044024804.1|696699_698610_+|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl|CDD|226063
NC_015977.1|WP_014078833.1|722249_723671_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|224567

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014078811.1|700029_701790_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.9442e-162
NC_015977.1|WP_014078828.1|713938_714535_+|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl|CDD|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	2.80716e-100
NC_015977.1|WP_014078825.1|709688_710294_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl|CDD|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	5.71545e-147
NC_015977.1|WP_014078816.1|704702_705317_+|HAD-family-phosphatase	gnl|CDD|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.29844e-37
NC_015977.1|WP_014078830.1|715769_717548_+|pyruvate-kinase	gnl|CDD|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NC_015977.1|WP_014078813.1|701904_703695_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.44127e-176
NC_015977.1|WP_014078827.1|711607_713935_+|endopeptidase-La	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NC_015977.1|WP_014078831.1|718230_720696_-|glycosyl-transferase	gnl|CDD|225990	COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport and metabolism].	0
NC_015977.1|WP_014078810.1|699300_699522_-|alpha/beta-type-small-acid-soluble-spore-protein	gnl|CDD|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	3.38737e-26
NC_015977.1|WP_014078829.1|714810_715743_+|carbamate-kinase	gnl|CDD|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	3.40947e-164
NC_015977.1|WP_014078826.1|710342_711602_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl|CDD|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NC_015977.1|WP_014078807.1|696032_696686_+|YesL-family-protein	gnl|CDD|377412	pfam04854, DUF624, Protein of unknown function, DUF624. This family includes several uncharacterized bacterial proteins.	4.79556e-06
NC_015977.1|WP_014078806.1|694481_696002_+|alpha-N-arabinofuranosidase	gnl|CDD|226064	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism].	0
NC_015977.1|WP_014078820.1|705646_706198_+|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.3785e-12
NC_015977.1|WP_014078815.1|704084_704606_+|cysteine-hydrolase	gnl|CDD|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	7.97486e-32
NC_015977.1|WP_014078824.1|708239_709583_+|trigger-factor	gnl|CDD|234956	PRK01490, tig, trigger factor; Provisional.	4.13544e-152
NC_015977.1|WP_014078832.1|721159_722179_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.76101e-89
NC_015977.1|WP_044024804.1|696699_698610_+|glycoside-hydrolase-family-127-protein	gnl|CDD|226063	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_015977.1|WP_014078833.1|722249_723671_+|ABC-transporter-substrate-binding-protein	gnl|CDD|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	3.78825e-09

Protein sequences

>NC_015977.1|WP_014078820.1|705646_706198_+|GNAT-family-N-acetyltransferase
MIYEPREITCRDGRSCILRSAAVTDANDLIRYLKVTAGETPFLIREPDEISLTPEQEEHFIEGIVKEPRELMLIGTVAGEHVGNCSLMSLGNYERYAHRCSVAIALYQKYCGLGIGREMLKTVLTVAKQCGYEQAELEVVSTNTPAIRLYESLGFEIWGTQPHSVRYRDGSYADDHFMVKRLV
>NC_015977.1|WP_014078816.1|704702_705317_+|HAD-family-phosphatase
MKNIVFDMGNVLTKYKLSDYIGTYTEDEAQAALLKNQVCASVEWICMDRGTMTDEEAVRSICKRILQSEWELVERFVREFRMKQEPNPPMEALLGELKEQGYHLFLMSNTSHRFRAFSKNIPSVGYMDGIWISCECGYLKPEREAYVDFFRKMKIEPQESYFVDDSPANIEAGIRLGMRGCVYHQDMPELRRNLREAGIDLKDA
>NC_015977.1|WP_014078815.1|704084_704606_+|cysteine-hydrolase
MQKILIVVDMQNDFINGALGTPEAVAIVPRVEQKIREFPGKVIFTRDTHGERYLETQEGKHLPVPHCIKGTKGWEICPQLEALREAEAIDKVTFGSEKLGELLQEENRKEQIEDITLVGLCTDICVISNALLLKAFLPETPIIVDASCCAGVTPKSHEIALDAMRMCQINIER
>NC_015977.1|WP_014078814.1|703872_704100_+|hypothetical-protein
MKKRCPAGLRGEKETVRPEKREKTGLGKKKELVRPAESEKQKKFVKKRCPAGLREEKETVRPAKFQKEEKRCRKY
>NC_015977.1|WP_014078813.1|701904_703695_+|ABC-transporter-ATP-binding-protein
MAVNSYREDEFMENTDKKKIFRRLFSYLLEYKAILIGVLLCMAVTVAISLVNPLLIEEAIDHYIANKDMKGLMGLGLFALGLNIIFIIMVKIRMYVMAVVSNKILLRIRQDLYEHIQTLSFSFFDSRPTGKILARIIGDVNSLRDVLVNVVTTLIPELITVIGVVVIMLIKDWRLALASLSTIPLMIGGIWFVQTASHKRWQIFRKKSSNLNAYVHEDIAGMNVVQSFGAEEETREIFGNLTDEHQQSFVDAVRYADMFGPVIDFCWGIGAMMLYLVGVRFLGFEKVSVGLLVAFGTYINMFWNPIMNLSNFYNNLVTNLTAAERIFDILDTKADIVDAADVTELPEVQGRVEFSHVSFTYDKGTPAETKVLSDVSFVVEPGETIALVGPTGAGKTTIVNLISRFYDIEDGVISVDGYDLTKISIESLRRQMGVMTQDNFIFHGTVRENILYGKLDATDEEMIAAAKAVNAHEFIMKMEKGYDTELKEHGAGLSIGQRQLIAFARTMISMPKILILDEATSSIDTHTEILVQKGIEALLSGRTSFVIAHRLSTIQNADRIFVIDQGCILEQGSPAELMKKKGAYYDLYMAQFAGLE
>NC_015977.1|WP_014078811.1|700029_701790_+|ABC-transporter-ATP-binding-protein
MKKLYTYIGRYWYGYLFAVFSMVTAIVLDMLYPKITQQIVDDVIIGGKLELLTKLLVGIVIVGIGRSIFGYCKEFTFDVLASKIGSAMRKDLFDHIQSLSMGYFEDTNTGELMARVKDDVDKIWNAMGYVGMLVIEVIIHVSMVLYCMFSLNWKLAFVPLATMILCGTVAIIMERKLDKIYEDISEENAVLTTVAEENLAGVRTVKAFAREKHEIEKFLSHNNRYYELNVSQAKVLTKYYPLFSFVGKVLPVCSTILGGIFVMNGEMTLGALVAFVEYSRNCTWPMEMLGWLTNDVSSAVASYKKIRKIYAEQPKIKNDEHPKVLDEIRGEICFDHAGFVMDGQKILQDINVTVPAGKTLGIMGATGSGKSSIVNLLQRFYDVTDGAVKIDGVDVRNMDVHQLRSNIAVVLQDVFLFSDTIEENIKMGQRKELQMEAVRLAAEDAKARGFIEKMDEQYETVIGERGVGLSGGQKQRISIARALAKHGPILVLDDSTSALDMETEHEIQQTLNALRDTTKIIIAHRISAVRHADEIIYLADGKIAERGTHEELLAKKGLYYDTYMAQYGALAMSSASAGEPAPAACC
>NC_015977.1|WP_014078810.1|699300_699522_-|alpha/beta-type-small-acid-soluble-spore-protein
MSGSSNSNSGTNQMAVPQAKEAMNRFKQEVASEIGVPLKDGYNGDLTSAQAGSIGGEMVKKMIMKQEEQMSGK
>NC_015977.1|WP_044024804.1|696699_698610_+|glycoside-hydrolase-family-127-protein
MSKEIALQQIRIKDPFWSGMQEKITDTVIPFQERVLNDKEEGVEKSHALDNFRIAAGLMEGEFYGMVFQDSDVAKWLEGVAYSLVIKPDAALEQRADDIIDIIAKAQQPDGYLNTFFTIKEPEHRWQNLLECHELYCAGHMMEAAVAYYEATGKDKLLGVMERMAQHIMNRFGEDKIPGIPGHQEVEIGLMRMYHATGKEAYKDMARYFLEERGKNPNFFKEETERRGWTHFGNMIPDDTKYNQSHATIYEQDEAVGHSVRAVYMYTAMADLAAEDHDEKLFAACRRLWENMTQKKMFITGGIGSTVEGEAFTKEYELPNDMNYAETCASIGLVFFARNMLKTEKNGRYADVMERALYNGIISGMQLDGKRFFYVNPLEVNPGVSGEIFGYKHVIPERPGWYACACCPPNLVRMVTSLGKYAWDEDETAVYSHLFLGQEAALGKADIRVESAYPWEGSVTYHVSAKIDELFTLAIHIPAYVKDLRVTVNGEAFDTAGEIRDGYLYISRKWGSDDQVELHFPLPVRKIYASTHVREDVGCVALMRGPVVYCFEGADNGANLQALAVKKELDAKALVCTEGRLSGLTLLDVAGIRLVPSEELYTEEPPKEETVTLRAIPYFAWGNRGLNQMRVWMHEK
>NC_015977.1|WP_014078807.1|696032_696686_+|YesL-family-protein
MNQFFDYNNNVFRILGGLADCLILGALWIVCSIPVVTMGAATAAVYHAVNKSIVHGQGYAFREYCTALKTDLKQTTGAWLLWGILAAFLAADLVVTRQFLAQGSALGALYYFFIVLSAMALAWEFYLTAYMARFEGTIRESMKKTLVMVVANLGWSALLVAVFVLFVLMCNDTQCLIVLFPGVFALVKNYVLEKVFRKYRTPEDLARELEMTREYRN
>NC_015977.1|WP_014078806.1|694481_696002_+|alpha-N-arabinofuranosidase
MAKLVINNDKKMSTIAPEIYGHFSEHLGRCIYEGLYVGEDSDIPNVNGMRTDVVEALKEMKIPVLRWPGGCFADEYHWMDGIGPKASRKKMINTHWGGVVEDNSFGTHEFFELCRQLGCKTYVNGNLGSGTVREMSEWVEYITFNGVSPMADLRKQNGHEEPWKIDYFGVGNENWGCGGNMRPQHYADEYRRYQTYVRNYAGNDPIAKICCGPNVDDYEWTKKVMETCFDHCEPRFHGMMDGLSLHYYTLPEVEDDWNKKGSATDFTEEIFYQTLKRGYFMDELINRHGAIMDEYDPDKKIGLIVDEWGIWTDVEPGTNPGFLYQQNTMRDALVAGMTLNIFNKHSDRVKMACIAQLINVLQSVMLTDGEKMIKTPTYHVFHMYRHHQGATLLRSDLIGAGTVGAGKNELPKVIESVSENADGVITVTLTNNSLEAAENVTIQLTDDGAAYGVCEASVVAGTMNAHNTFEAPEVVTEQAFADYEKTADGIRVQIPACSVVSIRLKK
>NC_015977.1|WP_014078824.1|708239_709583_+|trigger-factor
MSVQVENLEKNMAKLTIEVAAEEVEKAIQAAYLKEKGKISMPGFRKGKVPRKMIEKMYGEAVFYEDAANTLIQENYPAAVEESGIDIVSRPTIDVVQIESGKPFIFTAEVAVRPEVKLGKYLGVQVTKIDTSVSDEEVEAAVEKERNNNARTVTVTDRPIANGDTAVIDFEGFVDGVAFEGGKGENHPLEIGSHSFIDTFEDQLVGKNAGDEVEVNVTFPEKYQAADLAGKPAMFKVKIHEVKCKELPELNDEFAQDVSEFDTLEEYKADVKKHLEVEKENEAKKTKEDEAIQKIIDKSTMEIPEAMIETQCENMVNEFAQRLAQSGLSMEQYMQFSGLTLDKLKEQVRPEAETRIKSSLVLEQIAKDEKIEITDEELDAEIEKMAAQYGMEADKLKEYIGDNEKESMKRDLAVTKAVDLIMENVKERAKAKSKKEKEAEEKEGTEE
>NC_015977.1|WP_014078825.1|709688_710294_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MSLVPYVVEQTSRGERNYDIYSRLLKDRIIFLGEEVNETTASLVVAQLLFLESEDPNKDIQLYINSPGGMVTAGMAIYDTMQYIKCDVSTICIGLAASMGAFLLAGGTKGKRYALPNAEVMIHQPSGGAKGQATEIQIAAENILKTKKKLNEILAANTGKPYDVVAADTERDYYMSAEEAKAYGLIDDVIIRKDTKKEESK
>NC_015977.1|WP_014078826.1|710342_711602_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MAGRSDDEIRCSFCGKSQGQVRKLIAGPKGAYICDECVDICAEIIEEEFENEEETGTAEETEQINLLKPEELKAFLDDYVIGQDQAKKVLSVAVYNHYKRIMAGDDLGVELQKSNILMLGPTGSGKTLLAQTLARVLNVPFAIADATTLTEAGYVGEDVENILLKIIQAADYNIERAQHGIIYIDEIDKISKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQIDTTNILFICGGAFDGLEKIIETRMDQKAIGFNADIKSKNEYNIGDVLKHALPQDFVKFGLIPEFIGRVPVTVSLDMLDRDALIRILKEPKNALTRQYEKLFELDGVKLAFDADALEAIADKALERKTGARGLRAIMEAVTLDLMYHIPSDESITECEITKDLVEEKLSIEEQKLKTIEEK
>NC_015977.1|WP_014078827.1|711607_713935_+|endopeptidase-La
MLDTEILKIPAVALRGMVILPGMIAHFDISRDRSIRAIEQCMMDSQKIFLSAQKNVEQEEPGADDVYHIGVIAEVKQVIKLQNNIVRILVEGIERAELSAFAQTDPYLLAEVVPCVLPEEGLSEETKAAMVRSVQETYSRYQTVNPRAGKELLRQIGTIQDLPKLMDQVANNLPVSYEEKQKILEAMTLTERYEVLMALLLKEIEITAIQNEFQSKVKERVDKNQKEYILREQMKLIREELGEDNTESDADEYQKALDALDADQEVKNRIKKEIDRFKSISANSSESAVTRGYIETLLELPWNKASEDNKDLANAERILEEDHYGLEKVKERMLEFLAVRNLTSKGESPIICLVGPPGTGKTSIARSVARALDKKYVRICLGGVRDEAEIRGHRKTYVGAMPGRLVNGLRSAGVKNPLMLLDEIDKMSSDYKGDTASALLEVLDSEQNHKFRDHYVELPIDLSEVLFIATANSMQGIPRPLLDRMELIEVTSYTENEKLHIAREHLLAKQTERNGLKEDQFKVSDGALAKIISGYTREAGVRGLERRIGEIARKAAREIYEGKSSTVDVTVRNLEKYLGKEKYSQDMRGETDEVGIVRGLAWTSVGGDTLEIEVNVMPGKGEFQLTGQLGDVMKESAQTGISYIRSVGGQYDIPAEFFQKNDIHIHIPEGAVPKDGPSAGITMATAMLSAITGTPVRADVAMTGEITLRGRVLPIGGLKEKLLAAKNAGVRTVCVPKKNEKDVEEISGEIKKGLEIVYVETMEQVLRVAFCEKKE
>NC_015977.1|WP_014078828.1|713938_714535_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MVIKNVNLEIVCGITSKIPDTAYNEVAFAGKSNVGKSSLINALMNRKALARTSAQPGKTQTINFYNINDAMYLVDLPGYGYAKASEEVKAKWGKMIENYLHTSKRLKAVFLLIDIRHDPSANDRMMYEWMVYQGFAPIIIATKLDKIKRSQIQKNVKAIREGLGVQPGTMIIPFSAETKQGREEIWELIDSLVLPQDE
>NC_015977.1|WP_014078829.1|714810_715743_+|carbamate-kinase
MKKKKIVIALGHDALGTTLPEQKEATKRTAKAVADFIREDYQVVITHSNGPQVGMIHTAMNEFCRLYPEYTATPMSVCSAMSQGYIGYDLQNAIRAELLNRGIYKTVSTILTQVVVDPYDEAFYKPSKIIGRVMTEEEAEAEEKKGNHVTKVADGYRRIVAAPKPVDIVEMDAIRALTDADQIVVACGGGGIPVLSQDNNLKGASAVIEKDLAAGKLAELLEADMLVILTSVDNVCLDYGTENERPLNSMTVAEAKKYMEQGQFGEGDMQPKIQAAIDFIGDSAIRSVLITKLHVDGSQVTPGMGTMITK
>NC_015977.1|WP_014078830.1|715769_717548_+|pyruvate-kinase
MLRKTKIVCTLGPSTDDENVMRSLIEEGMNVARFNFSHGGHEEQFGRLTMLRKLREEMKRPVAALLDTKGPEIRLKEFASGKVELKNGQTFTLTTEDIVGDESRVAITYKDLPDDVKPGDTILIDDGLIGLEVKKIQKVSGTKADAEGKMPMDIVCTVMNGGMVSNKKGVNVPNVELSMPYISEKDYGDIVFAVENDYDFIAASFVRCADDVLAIRKILEEKGGEDIHIIAKIENMQGVQNIDEIIRVSDGIMVARGDMGVEIPLEDVPVIQKMIIKKVSGAGKVVITATQMLDSMMKHPRPTRAEATDVANAIYDGTSAIMLSGETAAGQYPIEALKTMVRIAVRTECDINYLQRFKDRKNMSSPDVTNAISHATCTMAGDLNAAAILAVSKSGRTARMISKYRPYSPIIGACLTEKVYRQLGLSWGVAPLLLEQKNKAEELFDYAVDTAETAGLISKGDVVVLTAGVPLGVSGTTNLIKVQVAGHILVKGKGIAGKKIAANLCVCHSEEDLANFKEGDIIVAADTNNCMMKQMRQASGLIVEADSDSCHAAIAGLSLDIPVLIGAKNALEVLKSSAYVELDSENGVVTAI
>NC_015977.1|WP_014078831.1|718230_720696_-|glycosyl-transferase
MKFGYFDDAKKEYVITSPRTPLPWINYLGSKDFFSLISNTCGGYSFYKDAKLLRLTRYRYNNVPFDSNGHYYYIKEGDTIWNPGWMPTKTELDSYECHHGMGYSTFRSSKNDLSAELTAFVPVDDSCEINKLTLTNNGSAPKTFSVFSYVEFCLWNAMDDMTNFQRNFSTGEVEVHGSAIYHKTEYRERRNHYALYAVNAPIAGFDTDRDSFLGAYGENSAPEVVVTGASKDSMASGWAPVGSHHLSVSLAPGESKTFVFVLAYIENPIDQKWVGRPEDGVINRAPAEALMARYDTTEKADAALAALKEYWDKLLSHFTISSSEEKLDRMVNVWHQYQCMVTFNMSRSASYFESGIGRGMGFRDSCQDLLGFVHLIPDRARERILDIAATQFEDGSAYHQYQPLTKKGNSDIGSGFNDDPLWLIAGAAAYIKETGDYTILDEMTPYDSDPSKATDFMEHLRRSFHYTMEHLGPHGLPLIGRADWNDCLNLNCFSTEPGESFQTFGPSEGPNAESVFIAGMFVRYGKDYAAICRHRGMDDEAAVAEKAIADMEKTVLDAGWDGEWFLRAYDHYKNKVGSKECEEGKIFIEPQGFCVMAEIGLKEGNCLKAMQSVEKYLDTKYGIVLLQPAYHRYHVELGEISSYPPGYKENAGIFCHNNPWISIAETVVGRGSRAWQVYTRTCPAYIEDISEIHRTEPYVYSQMIAGKDARNFGEAKNSWLTGTAAWTFLDVSQYILGIRPDYDGLVIDPCIPSSLDDFTARRDFRGTTYHVTVKNPNHVEKGVISMTVDGKDVDVSGISGGMIPIALADGKKDVNVEVVMG
>NC_015977.1|WP_014078832.1|721159_722179_+|LacI-family-DNA-binding-transcriptional-regulator
MVSLKTIAEKCGVSTATVSKALNDQKDVSEETKHRIKKTAEALGYFPNAAARALKTNRSYNIGVLFEEEAGSGLTHEYFSGVLNGLKVQAEKQGYDITFINTCFENRKMSYYEHCRYRNFEGVAIVCADYNDPDVLELMNSDLPVVTIDYVHHNCTAVSSNNIQGIEDLVKYIYQQGHRKIAYIHGQENSYVTKDRLASFYRTMDELGLEVPDEYIRTADYLETKEAARQTRELLNLADVPTCIIYPDDTALIGGRNVIIEMGLRIPRDISVAGYDGTRISQLLHPKLTTIRQNTELIGSEAAKRLIGTIEKPRTTLVERVVIEGSLVPGQSVGKFLQK
>NC_015977.1|WP_014078833.1|722249_723671_+|ABC-transporter-substrate-binding-protein
MKKKIISALLCASMVASMAAGCGSSDTADTTTTDNTASTPATEAAPAADAGTEAATDATASDEGKVLNIYCWNEEFKSRLEDHYPGYTIVDGTTGTIGDVTVKWNITPNDDNAYQNNLDATLLKQADAAADDKIDLFLVEADYALKYVDTDYTMAVKDLGITDADLADQYQYTKDIVTDSNGVLKGVSWQGCPGVLFYNREAAKEVLGSDDPADVQEYVKDWDTFNDTAAKLKDAGYKITSSANDSYRVYSNNVSSKWVTDGKITIDDNIMKWVDDSKELVDAGETSTAELWSDDWKKGFYPEGKVFCYFGPAWLVNFSMAAEDEGSIANLGGWGATQGPQGFFWGGTWICAANGTDNPSLVKDIMLQMTTNADIMKDIVVADDDFVNNKTTMEAMAEDTSYSSKVLGGQNPLAMYCAGVDGLDLSNLSAYDQGCNEEFQNAMKNYFEGNATKDEALDLFYKAVEEKYPELTH

Crispr_ID: NC_015977_4

• CRISPR_ID: NC_015977_4
• CRISPR_location: 917237-917337
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_4

Consensus_repeat	Method
GATGCCTCCCGGAAGTTCCACGGAA	CRISPRCasFinder

spacers of NC_015977_4

>4.1|917262|51|NC_015977|CRISPRCasFinder
CATTGGATGCACAGAAAGCAGTGCAGAAACAAGGGAAAATGAATCCTAGCG

CRISPR arrays and Neighbor proteins around NC_015977_4

CRISPR arrays

The CRISPR arrays of NC_015977_4

>merge|NC_015977|4|917237-917337|CRISPRCasFinder
GATGCCTCCCGGAAGTTCCACGGAACATTGGATGCACAGAAAGCAGTGCAGAAACAAGGGAAAATGAATCCTAGCGGATGCCTCCCGGAAGTTCCACGGAA

>NC_015977|4|4|917237-917337|CRISPRCasFinder
GATGCCTCCCGGAAGTTCCACGGAA	CATTGGATGCACAGAAAGCAGTGCAGAAACAAGGGAAAATGAATCCTAGCG
GATGCCTCCCGGAAGTTCCACGGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014079024.1|928728_929754_+|sugar-kinase	unknown	unknown	gnl|CDD|238571
NC_015977.1|WP_014079020.1|921411_924630_+|isoleucine--tRNA-ligase	unknown	unknown	gnl|CDD|235681
NC_015977.1|WP_014079023.1|927362_928385_-|sugar-kinase	unknown	unknown	gnl|CDD|238571
NC_015977.1|WP_014079017.1|919869_920847_+|DHH-family-phosphoesterase	unknown	unknown	gnl|CDD|223691
NC_015977.1|WP_014079011.1|913504_914131_+|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl|CDD|235544
NC_015977.1|WP_014079005.1|908165_908651_+|VanZ-family-protein	unknown	unknown	gnl|CDD|377417
NC_015977.1|WP_014079013.1|915725_916556_-|peptide-transporter	unknown	unknown	gnl|CDD|223156
NC_015977.1|WP_014079010.1|912485_913511_+|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NC_015977.1|WP_014079009.1|911903_912404_+|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl|CDD|376377
NC_015977.1|WP_014079025.1|930607_931180_-|chromate-transporter	unknown	unknown	gnl|CDD|376780
NC_015977.1|WP_044024608.1|908550_908961_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_143761674.1|920908_921118_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079007.1|908970_909555_+|HD-domain-containing-protein	unknown	unknown	gnl|CDD|372434
NC_015977.1|WP_014079004.1|907498_908179_+|orotate-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234771
NC_015977.1|WP_014079021.1|924630_927108_+|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl|CDD|340853
NC_015977.1|WP_014079026.1|931182_931752_-|chromate-transporter	unknown	unknown	gnl|CDD|376780
NC_015977.1|WP_014079016.1|919129_919792_+|HAD-family-hydrolase	unknown	unknown	gnl|CDD|223620
NC_015977.1|WP_014079008.1|909652_911689_+|aminopeptidase	unknown	unknown	gnl|CDD|225191
NC_015977.1|WP_014079012.1|914165_915443_+|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl|CDD|234856
NC_015977.1|WP_014079015.1|917588_919100_+|carboxypeptidase-M32	unknown	unknown	gnl|CDD|376724

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014079024.1|928728_929754_+|sugar-kinase	gnl|CDD|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.7824e-102
NC_015977.1|WP_014079020.1|921411_924630_+|isoleucine--tRNA-ligase	gnl|CDD|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_015977.1|WP_014079023.1|927362_928385_-|sugar-kinase	gnl|CDD|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.47344e-81
NC_015977.1|WP_014079017.1|919869_920847_+|DHH-family-phosphoesterase	gnl|CDD|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.46359e-42
NC_015977.1|WP_014079011.1|913504_914131_+|phosphoribosylglycinamide-formyltransferase	gnl|CDD|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	3.15474e-96
NC_015977.1|WP_014079005.1|908165_908651_+|VanZ-family-protein	gnl|CDD|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	2.95396e-33
NC_015977.1|WP_014079013.1|915725_916556_-|peptide-transporter	gnl|CDD|223156	COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport and metabolism].	6.43047e-67
NC_015977.1|WP_014079010.1|912485_913511_+|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NC_015977.1|WP_014079009.1|911903_912404_+|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl|CDD|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	2.57742e-86
NC_015977.1|WP_014079025.1|930607_931180_-|chromate-transporter	gnl|CDD|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	1.01516e-38
NC_015977.1|WP_014079007.1|908970_909555_+|HD-domain-containing-protein	gnl|CDD|372434	pfam13023, HD_3, HD domain. HD domains are metal dependent phosphohydrolases.	1.49719e-74
NC_015977.1|WP_014079004.1|907498_908179_+|orotate-phosphoribosyltransferase	gnl|CDD|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	4.43303e-63
NC_015977.1|WP_014079021.1|924630_927108_+|glycogen/starch/alpha-glucan-phosphorylase	gnl|CDD|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NC_015977.1|WP_014079026.1|931182_931752_-|chromate-transporter	gnl|CDD|376780	pfam02417, Chromate_transp, Chromate transporter. Members of this family probably act as chromate transporters. Members of this family are found in both bacteria and archaebacteria. The proteins are composed of one or two copies of this region. The alignment contains two conserved motifs, FGG and PGP.	1.04435e-45
NC_015977.1|WP_014079015.1|917588_919100_+|carboxypeptidase-M32	gnl|CDD|376724	pfam02074, Peptidase_M32, Carboxypeptidase Taq (M32) metallopeptidase.	0
NC_015977.1|WP_014079008.1|909652_911689_+|aminopeptidase	gnl|CDD|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	1.82501e-15
NC_015977.1|WP_014079012.1|914165_915443_+|phosphoribosylamine--glycine-ligase	gnl|CDD|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NC_015977.1|WP_014079016.1|919129_919792_+|HAD-family-hydrolase	gnl|CDD|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	9.35131e-34

Protein sequences

>NC_015977.1|WP_014079013.1|915725_916556_-|peptide-transporter
MKHFLRLTDYTKADIYEIFHITDEILEGHYQNLLQGKSVVLFFPESSIRTRVTFEKGIALLGGQPILFPSSALDKKEDLQDVIGYLNNWANLLVVRHRDMAALEKIAASASVPVINALTDANHPCEMAADLYALSKIRNDFTMDHFLFCGVTGNIGLAWKEASEVMGFSLEQCCIPGYEMNGVPSHHCIRDAIRGKDIICTDSLPADLLSASRGCTVDLAAMKLANEGAILNPCPPFYRGEEVSNDVIDSDYFVGYEFKKHLLTVQQAIMVYCLTH
>NC_015977.1|WP_014079012.1|914165_915443_+|phosphoribosylamine--glycine-ligase
MKVLVVGSGGREHAIVTSVAKSPRVDKIYCAPGNAGIASLAECVAIGAMEFDKLVAFAKEHAVDFTIVGMDDPLVGGIVDVFEAEGLKVFGPRKNAAILEGSKAFSKDLMKKYHIPTAAYENFTSAEDALTYLETVKMPIVLKADGLALGKGVLICNTLEEAKAGVKEIMEDKKFGSAGNTMVVEEFMTGREVSVLSYVDGKTIKIMSSAQDHKRAKDGDQGLNTGGMGNFSPSPFYTKEVDEFCQKHIYQATVDAMAAEGRPFTGVIFFGLMLTEDGPKVLEYNARFGDPEAQVVLPRMKNDIIDVMEACVDGKLDTIDLQFEDNAAVCVVLASDGYPVSYEKGFPITGLEKFDGKDDYFCFHAGTKFDENGTIVTNGGRVLGITATGKDLKEARAKAYEATEWVDFANKYMRHDIGRAIDEVK
>NC_015977.1|WP_014079011.1|913504_914131_+|phosphoribosylglycinamide-formyltransferase
MLKVAVLVSGGGTNLQAILDAIDEGRITNARVDVVISNNPGAYALERAKGHGIEALCISPKDYESREAFNEAFLAMLDSYQVDLVVLAGFLVVIPEQMIAQYRNRIINIHPSLIPSFCGKGFYGLKVHEGALARGVKVTGATVHFVDEGTDTGPIILQKPVAVEEGDTPEILQRRVMEQAEWIILPQAIDLIANGRVSVANGHVTVEK
>NC_015977.1|WP_014079010.1|912485_913511_+|phosphoribosylformylglycinamidine-cyclo-ligase
MDYKNSGVDIEAGYKSVELMKKYVKGTMRPEVLGGLGGFSGAFSMESFKNMEKPTLVSGTDGCGTKVKLAFLLDKHDTIGIDCVAMCVNDIACAGGEPLFFLDYIACGKNYPEKIATIVSGVAEGCKQAGCALIGGETAEHPGLMPENEYDLAGFSVGIVDEKDIITGADLAAGDVLIGMASSGVHSNGFSLVRKIFSMDADTLNTYHEELGKTLGEALLAPTRIYVKALREVKEAGVRVKACSHITGGGFYENIPRMLPEGKHAVIRKDSYEVPAIFQMMAREGKVEEQMMYNTYNMGIGMIVAVDPADVDKTIAAMKAAGDTPYIVGEIKDGEKGVTLC
>NC_015977.1|WP_014079009.1|911903_912404_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MAKVGIVMGSDSDMPVMAKAADILEKLGIDYEMTIISAHREPDVFFEYAKSAEVKGFKVIIAGAGMAAHLPGMCAAIFPMPVIGIPMHTTSLGGRDSLYSIVQMPSGIPVATVAINGGANAGLLAAKILATSDDAILQKLKEYSKELKEQVQAKDARLQEVGYQNY
>NC_015977.1|WP_014079008.1|909652_911689_+|aminopeptidase
MGYQECYKETNELAAERYELVAERIAEIAEAAQAPEPFAEYFRTNAGYLQSLRALYEKGKSGSLAARSMEECEADNEALYGEILPEAYGHSYANPAYAAARLGETFGGALSLLAAHLRTACGEVFRGNLMQLTIAMELFVEVYNCFEGAAADALPQEKEVQQILYWYFHDYREIFDERSVRRLVNPAEDFEKEIVMQADLSDLRYLYRYGAYIGENERQIAAYLNTLPEADIQAMADTYTEGYRIGFETTGKDLSKKTAAQVRYPIGFERMVRAAVCNFEKMGLEVTMLASGTAANKQYDYDHREDRAYYLDKAYVERGLETWKNAFEEEKVHANGMAGPAVIEVFGEEPFSPETKKEAFRYGEKQQQLCVYEMSQRGQITNQYIKGEERSFTIIAYPLPSIGARFEEIFAETVKINTLDYMLYRNMQQKMIDVLDQADRVHITGKGANKTDLYVNIWKLRNPEGETAFENCVADVNIPVGEVFTSPVLEGTNGKLHVGQVYLNGLNYKNLEIDFKDGMVEKYTCTNFEDEAENKNYIRDNVLMHHETLPMGEFAIGTNTTAYRMARDYDIADKLPILIAEKTGPHFAVGDTCYSHEEDNLSYNPDGKAIVARENTVSAQRRENPEKAYLNCHTDITIPYDELDKITVIRKDGTTEDIIADGRFVLAGTEALNGPLDR
>NC_015977.1|WP_014079007.1|908970_909555_+|HD-domain-containing-protein
MTDFEKQMAFIMELDKIKKITRQTYLSDGSRKENDAEHSWHLALMAFVFADYANEKIDVLKTMKMVLLHDVIEIDAGDTYAYDTEGNKTKRERELKAADRIFGLLPDAQRMEYRGLWDEFEAMETVEAKFANMLDKVQPLLLNNASNGKSWVEHGVRESQVLARNSRTHEGSEELWAYAKSLIEENVKKGRLQP
>NC_015977.1|WP_044024608.1|908550_908961_+|hypothetical-protein
MRWAVWRVTAYIACLCVIIIREIREEKKVARRHRNGYRFTEKTHSKRGVAALFLSIISIGILVAAVVSSFDSRGNGSMYLGSAGVTSMLIGICALVLAVKSLGEENSFKLFPYLSTLCSLLITGIWVALYVIGFLA
>NC_015977.1|WP_014079005.1|908165_908651_+|VanZ-family-protein
MAATRRKHRLAAGILFLIYFVVLFYFLFFSEKMGRTYSERAYHYNLVPLKEIARFVKYWRVLGMKAVLLNILGNVAAFLPFGFFLPVFSGRCKKFWRTAFYSFELSLLVELLQLVFRVGSFDVDDLLLNTLGGMAGYGLYRLFVRYYHQRNQRGKESGETT
>NC_015977.1|WP_014079004.1|907498_908179_+|orotate-phosphoribosyltransferase
MEQYKQEFIEFMVESDVLKFGEFTLKSGRKSPFFMNAGAYVTGSQLMRLGEYYARAIHETYGDDFDVLFGPAYKGIPISVVTAVAFHNLYGKEVRYCSDRKEEKDHGADKGSFLGSKLKDGDRVVMIEDVTTSGKSMEETVPKVRGAADVTIVGLMVSLNRMEKGLGGEKSALEEIREKYGFETNAIVTMEEVVEHLYNRTCQGRVVIDDTIKAAIDDYYKQYGCN
>NC_015977.1|WP_014079015.1|917588_919100_+|carboxypeptidase-M32
MSRLLEEFKEYLKEMNQYDHVTGLLQWDMQTTVPKLGQAAHVDALTYFSTKSFEMGTSEKLGEFLEKLAQPAEYDALDDTWRFIVKRMKRDYDRNKRIPADLYEAFVRAAAESGNAWEEAKNASDFSIYAPHLRNMIEMTKQVIGYTDPGKDVYDALLEQCEEGMDQATIDRLFEEVKTELIPLVEQITAKKMPENPTFHAYADPDAQRRVQWLLLDYIGFRRDAGAVGETEHPFTTNFSSKDVRVTNHYYETEPLSAMFSAIHEGGHAIFEQNVNPEYDNTVAGSCCYMGVHESQSRFYENILGRNINFWKPIYEKLGELLPQFKNVTLEAFEREINRVENSMVRTEADEVTYCFHIILRYEMEKAIFYDHVPVEKLPELWNQKMQEYLHITPENDAEGILQDVHWSDGSFGYFPSYLLGSIYDGMYLEKMEEELGSVDEILADGRIGEITKWLNEKIHWYGSTRTPKEVIAAVCGKEVSAQPLVRYMKKKYTRLYGLSEEA
>NC_015977.1|WP_014079016.1|919129_919792_+|HAD-family-hydrolase
MKRGIIFDMDGTLWDSAENVAKSWNVAIRQYGVREKELTTQDIQGVMGKTMDVIADILFAEFPEEKRRLLLKECCQVENDYLREHGGILYDQVPQTLAALKRDGYHLSIVSNCQKGYIEAFLDHYDLWELVEDIECYGNNLRQKGENIRLVVERNRLDEAVYVGDIQGDYDASRAAGVGFIHAAYGFGEIAEPVPELKTFADLKTFDISSASKTQSAWTM
>NC_015977.1|WP_014079017.1|919869_920847_+|DHH-family-phosphoesterase
MTKFEELLQQINRQHVYIQTHNFPDPDAIASAYGLKRLLATRGIEASICYKGKIDRYGTGRLCEILDIELLNVEDLTEVLTDEDEVILVDSQKGNSNIINITGDEIICIDHHPYNDKCQYRFQDIRPEVGACATMIAQYFMENDIAMDKKIATALTYGIRIDTHNLSRGVSKLDIEMLYRMYDDCDYEEIHTLENSNLCFEDLVAYSKAISSIEVYDNISFADTGEDCPEALIASVSDFMLALVEVSFSVVYSRRGDGIKLSVRSEKSSLDAGKITAEALQGIGNGGGHAAMAGGFVPFTGSDGKAVILIDQIKERFFSTIAKRR
>NC_015977.1|WP_143761674.1|920908_921118_+|hypothetical-protein
MKQSRKNASEAEAEDRKWSRTGGQGNGISDLDNAGLQGLYLHIVDKGSDEDSKLWMKGKASRGGESRCE
>NC_015977.1|WP_014079020.1|921411_924630_+|isoleucine--tRNA-ligase
MYNKVDTNLNFVDREKQVREFWKDNDIFKKSMEQRKQGETYTFYDGPPTANGKPHIGHVETRTIKDMIPRFQAMKGKYVPRKAGWDTHGLPVELGVEKMLGLNGKEQIEEYGIEPFIKKCKESVWEYKGMWEDFSDIVGFWADMENPYITYDNNFIESEWWALKQIWDKKLLYKGFKIVPYCPRCGTPLSSQEVAQGYKTVKERSAVVRFKVVGEDAYFLAWTTTPWTLPSNVALCVNPEDTYCKVKAADGYTYYMAEALLDKVLGRLGTPAEKGKDGEPDTPEVKAYEVLETYKGSELERKEYEPLYACAKEVADRQHKKGFFVTCDTYVTMSDGTGIVHIAPAFGEDDANVGRKYDLPFVQFVDGKGELTKETPYAGIFVKKADPEVLKDLEAQGKLFDAPKFEHEYPHCWRCDTPLIYYARESWFIKMTAVKDDMIRNNNTVNWIPESIGKGRFGDWLENIQDWGISRNRYWGTPLNIWECEGCGHQESIGSRAELAEKSGDPKAAEVELHRPYIDEVTFTCPDCGKTMKRVPEVIDCWFDSGAMPFAQHHYPFENQDLFAQQFPAKFISEGVDQTRGWFYSLMAESTLLFNKAPFENVIVMGHVQDENGQKMSKSKGNAVDPFEALSAYGADAIRWYFYTSSAPWIPKRFNGKLVQEGQRKFMGTLWNTYAFFVLYANIDNFDASKYVLAYEKLSVMDKWLLSKLNTVIKEVDNNLSNYRIPEAARALDDFVDDMSNWYVRRSRERFWAKGMEQDKINAYMTLYTALVTICKCAAPMIPFMTEDIYQNLVRSVDQTAPESIHLCDFPVANEVYIDAELEKNMDEVLKIVVMGRACRNSANIKNRQPIGNMFVKAPSALPEFFVEIIEDELNVKKVTFTDDVSAYTSYTFKPQLRTVGPKYGKFLGQIQKALAALDGNAAMAELKANGVLALPSVDESVKLAEEDLLITITQMEGYVTEGDNTVTVVLDTNLTPELIEEGFVREIISKIQTMRKEAGFEVMDQITIYHKSDEKVSGIFEQYGDTIKSDVLGVNVVADTAGAFADEPEVYSKEWNINGEHVLLGVKKGGN
>NC_015977.1|WP_014079021.1|924630_927108_+|glycogen/starch/alpha-glucan-phosphorylase
MKSGVFDKKAFIQSVRDNLKNLYRKTLEEADQQEIFQAVSFAVKDVINDRWLATQQVFDKEDPKIVYYMSMEFLMGRALGNNLINLKEYKEVREALDEIGLNLDVIEDQEPDPALGNGGLGRLAACFMDSLSTLGYAAYGCGIRYRYGMFKQKIQDGFQVEVPDNWLKNGYPFELHRPEYTYEIKFGGHVRTESREDGSLRFVQEDYQSVLAIPYDMPVVGYGNNVVNTLMIWDAAAKDYFELDSFDKGDYQKAVEQQNLARNLVEVLYPNDNHVAGKELRLKQQYFFVSASVQRALARYKKNHDDIRRLPEKVTFQLNDTHPTVTVAELMRILVDEEGLGWDEAWEITTKTCAYTNHTIMAEALEKWPIEIFQRLLPRIYQIVDEINRRFVLQIQERYPGDDGKVARMAILYDGQVKMAHLAIVAGYSVNGVARLHTEILKNEQLHDFYEMFPEKFNNKTNGITQRRFLMHGNPLLADWVTKHIGDGWITELMQLARLVPYASDAKAQKEFMEIKRRNKVRLAEYIKEHNGIEVDPDSIFDVQVKRLHEYKRQFLNILHVMYLYNELKANPQMDFYPRTFIFGAKAAAGYRNAKLTIKLINSVADVINNDADIKGKIKVVFIEDYRVSNAEWIFAAADVSEQISTASKEASGTGNMKFMLNGALTLGTMDGANVEMAEEVGMENIFIFGMSSEEVIAHERNRDYDPMQIYNSDEGIRKVVNQLVDGTFSPNDPGLFRDLYNSLLNTQCTQYADTYFILKDFRSYVDAQKRIVEYYQDKQAWAKSAILNTAHAGKFSSDRTIQEYVDEIWHLDHITVPDALVAKM
>NC_015977.1|WP_014079023.1|927362_928385_-|sugar-kinase
MDRKYDVITLGEILLRLSTPINGRLAQGDTLMKHLGGAELNIASEIGQLGLKTAIISKIPNNLLAAFIKNQLNASRVSENYLIEDHSDDSRVGIYYYEYGSYPRKPRVVYDRKHSSINNIDIKDVPATMFYNTRLFHTSGITLGLGGNAQKFAIECIRKFKENGTLISFDVNYRANLWSGEEARKCIESILPYVDIFFCSADTARLTFGKTGTIEEIQKSFCEEYPISVVASTERTVITPKKHDFTSIIYSAKEDRYYSESPYNSIDVVDRIGSGDAYVSGALYGYLRHHDCQKMLEYGNAMAAIKHSVIGDMVFTDLEEIDGIIAQHKDTSGFQPEMNR
>NC_015977.1|WP_014079024.1|928728_929754_+|sugar-kinase
MAKKVVTFGEIMLRLAPEGYYRFVQAGTYGATYGGGEANVAVSLANYGMDASFVTKLPAHEIGQAGVNALRQYGVDTSDIVRGGDRVGIYFLEKGASQRPSKVIYDRAGSSIATATTADFDWDKIFDGADWFHFTGITPALGDNVAAICLEACKAAKAKGITVSCDLNYRNKLWSKEKAGQVMGELCKYVDVCISNEEDANDVFGIKSEGTEVTAGELNKEGYKEVAQKLTDRFGFKKVAITLRTSISANDNRWAAMLYEDGQSYFSKEYLMHIVDRVGGGDSFGGGLIYACLNDYDPQSTIEFAVAASCLKHSVEGDFNMVSVDEVKKLAGGDASGRVQR
>NC_015977.1|WP_014079025.1|930607_931180_-|chromate-transporter
MIYLKLFLNFLMIGALSFGGGYGMVSLVRETVISNGWLTESEFLNFIAVSESTPGPLAVNMATFIGSTQGGILGSFLATLGVVLPSFIIILLIAAVLKNLMKYAGVNAFLSGVRPCVIAMILATAIGMAISTLLGFTDIYSALAPDPKSILVFAILWLTHFGYKRIKKTAPSSIIMILFSAALGILLWGV
>NC_015977.1|WP_014079026.1|931182_931752_-|chromate-transporter
MRKEWTLFFTFLKIGAFTFGGGYAMIALLENEFVERKKWIKKDDFLNMVAIAESTPGPVAINSATYIGYKIAGLFGAAAATVAVCIPSFTVIFCISLFFDQFLSLTWVSRAFRGIQVCVIYLISSAGLKMLKTIERNAFNTVILLSVIAAMLACTVFAVSFSSVYYILICGTAGLAIFFLKKLRKGNGN

Crispr_ID: NC_015977_5

• CRISPR_ID: NC_015977_5
• CRISPR_location: 1000886-1000992
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_5

Consensus_repeat	Method
GCAGAAAGCAGCGCAAAAAGATGACATAAT	CRISPRCasFinder

spacers of NC_015977_5

>5.1|1000916|47|NC_015977|CRISPRCasFinder
GAATCCTACCGGATTCATATTAGAAGTTCCGGTGGAACTTCGGATGT

CRISPR arrays and Neighbor proteins around NC_015977_5

CRISPR arrays

The CRISPR arrays of NC_015977_5

>merge|NC_015977|5|1000886-1000992|CRISPRCasFinder
GCAGAAAGCAGCGCAAAAAGATGACATAATGAATCCTACCGGATTCATATTAGAAGTTCCGGTGGAACTTCGGATGTGCAGAAAGCAGCGCAAAAAGATGATATAAT

>NC_015977|5|5|1000886-1000992|CRISPRCasFinder
GCAGAAAGCAGCGCAAAAAGATGACATAAT	GAATCCTACCGGATTCATATTAGAAGTTCCGGTGGAACTTCGGATGT
GCAGAAAGCAGCGCAAAAAGATGATATAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014079101.1|1006078_1007503_+|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydG	unknown	unknown	gnl|CDD|274879
NC_015977.1|WP_014079093.1|997286_998519_+|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl|CDD|180263
NC_015977.1|WP_143761794.1|998750_1000292_+|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl|CDD|200572
NC_015977.1|WP_014079085.1|989683_990376_+|porphobilinogen-synthase	unknown	unknown	gnl|CDD|236450
NC_015977.1|WP_014079096.1|1001036_1002482_+|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|214599
NC_015977.1|WP_014079100.1|1004967_1006053_+|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE	unknown	unknown	gnl|CDD|274880
NC_015977.1|WP_014079089.1|993576_994161_+|DUF3877-family-protein	unknown	unknown	gnl|CDD|379011
NC_015977.1|WP_014079104.1|1009526_1010132_+|cytidylate-kinase-like-family-protein	unknown	unknown	gnl|CDD|379060
NC_015977.1|WP_014079098.1|1003736_1004258_+|GtrA-family-protein	unknown	unknown	gnl|CDD|377229
NC_015977.1|WP_044024850.1|1007602_1008826_+|[FeFe]-hydrogenase-H-cluster-maturation-GTPase-HydF	unknown	unknown	gnl|CDD|274853
NC_015977.1|WP_014079099.1|1004698_1004944_+|iron-only-hydrogenase-system-regulator	unknown	unknown	gnl|CDD|274882
NC_015977.1|WP_014079103.1|1008915_1009365_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079097.1|1002544_1003663_+|metallophosphoesterase-family-protein	unknown	unknown	gnl|CDD|277329
NC_015977.1|WP_014079091.1|994596_995046_+|RrF2-family-transcriptional-regulator	unknown	unknown	gnl|CDD|273242
NC_015977.1|WP_014079092.1|995385_997197_+|elongation-factor-4	unknown	unknown	gnl|CDD|235462
NC_015977.1|WP_044024851.1|1010211_1011579_+|sodium:alanine-symporter-family-protein	unknown	unknown	gnl|CDD|224040
NC_015977.1|WP_014079090.1|994162_994585_+|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224870
NC_015977.1|WP_014079087.1|991925_993110_+|cysteine-desulfurase-NifS	unknown	unknown	gnl|CDD|132443
NC_015977.1|WP_014079088.1|993136_993574_+|Fe-S-cluster-assembly-scaffold-protein-NifU	unknown	unknown	gnl|CDD|132460
NC_015977.1|WP_044024849.1|990415_991687_+|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl|CDD|234607

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014079101.1|1006078_1007503_+|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydG	gnl|CDD|274879	TIGR03955, iron-only_hydrogenase_maturation_rSAM_protein_HydG, [FeFe] hydrogenase H-cluster radical SAM maturase HydG. This model describes the radical SAM protein HydG. It is part of an enzyme metallocenter maturation system, working together with GTP-binding protein HydF and another radical SAM enzyme, HydE, in H-cluster maturation in [FeFe] hydrogenases. [Protein fate, Protein modification and repair].	0
NC_015977.1|WP_014079093.1|997286_998519_+|radical-SAM-family-heme-chaperone-HemW	gnl|CDD|180263	PRK05799, PRK05799, oxygen-independent coproporphyrinogen III oxidase.	1.60216e-148
NC_015977.1|WP_143761794.1|998750_1000292_+|N-acetylmuramoyl-L-alanine-amidase	gnl|CDD|200572	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. This family is represented by Bacillus subtilis pdaA gene encoding polysaccharide deacetylase BsPdaA, which is a member of the carbohydrate esterase 4 (CE4) superfamily. BsPdaA deacetylates peptidoglycan N-acetylmuramic acid (MurNAc) residues to facilitate the formation of muramic delta-lactam, which is required for recognition of germination lytic enzymes. BsPdaA deficiency leads to the absence of muramic delta-lactam residues in the spore cortex. Like other CE4 esterases, BsPdaA consists of a single catalytic NodB homology domain that appears to adopt a deformed (beta/alpha)8 barrel fold with a putative substrate binding groove harboring the majority of the conserved residues. It utilizes a general acid/base catalytic mechanism involving a tetrahedral transition intermediate, where a water molecule functions as the nucleophile tightly associated to the zinc cofactor.	7.06578e-98
NC_015977.1|WP_014079085.1|989683_990376_+|porphobilinogen-synthase	gnl|CDD|236450	PRK09283, PRK09283, porphobilinogen synthase.	1.69829e-166
NC_015977.1|WP_014079096.1|1001036_1002482_+|methyl-accepting-chemotaxis-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.38074e-42
NC_015977.1|WP_014079100.1|1004967_1006053_+|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE	gnl|CDD|274880	TIGR03956, iron-only_hydrogenase_maturation_rSAM_protein_HydE, [FeFe] hydrogenase H-cluster radical SAM maturase HydE. This model describes the radical SAM protein HydE, one of a pair of radical SAM proteins, along with GTP-binding protein HydF, for maturation of [Fe] hydrogenase in Chlamydomonas reinhardtii and numerous bacteria. [Protein fate, Protein modification and repair].	0
NC_015977.1|WP_014079089.1|993576_994161_+|DUF3877-family-protein	gnl|CDD|379011	pfam12993, DUF3877, Domain of unknown function, E. rectale Gene description (DUF3877). Based on Eubacterium rectale gene EUBREC_0237. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE14737), it appears to be upregulated in the presence of Bacteroides thetaiotaomicron vs when isolated in culture.	1.77567e-80
NC_015977.1|WP_014079104.1|1009526_1010132_+|cytidylate-kinase-like-family-protein	gnl|CDD|379060	pfam13189, Cytidylate_kin2, Cytidylate kinase-like family. This family includes enzymes related to cytidylate kinase.	6.36533e-56
NC_015977.1|WP_014079098.1|1003736_1004258_+|GtrA-family-protein	gnl|CDD|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	5.03784e-05
NC_015977.1|WP_044024850.1|1007602_1008826_+|[FeFe]-hydrogenase-H-cluster-maturation-GTPase-HydF	gnl|CDD|274853	TIGR03918, hydrogenase_maturation_GTPase_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF. This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity. [Protein fate, Protein modification and repair].	0
NC_015977.1|WP_014079099.1|1004698_1004944_+|iron-only-hydrogenase-system-regulator	gnl|CDD|274882	TIGR03959, putative_iron-only_hydrogenase_system_regulator, putative iron-only hydrogenase system regulator. Members of this protein family occur as part of a system for producing iron-only hydrogenases, dependent on radical SAM proteins HydE and HydG and GTPase HydF. One member of this family, TM_1266 from Thermotoga maritima, has a known crystal structure. The small size, about 80 residues, and a distant relationship to the nickel regulator NikR of the CopG transcriptional regulator family suggest a role as a transcription factor. [Regulatory functions, DNA interactions].	5.06559e-34
NC_015977.1|WP_014079097.1|1002544_1003663_+|metallophosphoesterase-family-protein	gnl|CDD|277329	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.17681e-26
NC_015977.1|WP_014079091.1|994596_995046_+|RrF2-family-transcriptional-regulator	gnl|CDD|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	3.98595e-51
NC_015977.1|WP_014079092.1|995385_997197_+|elongation-factor-4	gnl|CDD|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_015977.1|WP_044024851.1|1010211_1011579_+|sodium:alanine-symporter-family-protein	gnl|CDD|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	9.99412e-134
NC_015977.1|WP_014079090.1|994162_994585_+|Rrf2-family-transcriptional-regulator	gnl|CDD|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	1.79249e-46
NC_015977.1|WP_014079087.1|991925_993110_+|cysteine-desulfurase-NifS	gnl|CDD|132443	TIGR03402, Cysteine_desulfurase_NifS, cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.	0
NC_015977.1|WP_014079088.1|993136_993574_+|Fe-S-cluster-assembly-scaffold-protein-NifU	gnl|CDD|132460	TIGR03419, NifU_clost, FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.67703e-70
NC_015977.1|WP_044024849.1|990415_991687_+|glutamate-1-semialdehyde-2,1-aminomutase	gnl|CDD|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0

Protein sequences

>NC_015977.1|WP_143761794.1|998750_1000292_+|N-acetylmuramoyl-L-alanine-amidase
MQGTQSATQEIEGEVIWSEETKTEENPLIVCVDAGHGGKDNGSDYKGRYEKDDNLKLAQAVSAYLADKNVKVVMTRSDDTFLRLSERCGIANQSGADYMLSLHRNDGEGNGVETWISASGSEETDALANHIMEVLDTAGIQRNRGVKKGTQTGESSNYYINVHSDMPSCIVEMGFINDASDNQLFDEKLDAYAAAIGDAVLATAETYRANKVTDGNGQGAGEAGSGTGDGQGTDGTGDGAGDDQGTDGTGNDTGDGQRADQTGSSTGDGQSAAGGNAAVQTIALDGLDTTVQSWGLGSHTDADNRPNDAVSAQQKYGDYHALFIGENTKTLYLTFDEGYEYGYTESILDTLKEKGVHAVFFVTEPYAKAEPALVQRMIDEGHVVGNHSVTHPSAGIPSLTVEQQQEEVMGNHQYIKDTFGYEMNLFRYPAGKFSEQSLAVVNNCGYESVFWSFAYLDYDVDNQPDQAESLQKMKNKMHPGAIYLLHAESATNAAVLGDLIDAAQTQGYSFGTL
>NC_015977.1|WP_014079093.1|997286_998519_+|radical-SAM-family-heme-chaperone-HemW
MELYIHIPFCVKKCQYCDFLSFAADEATQAAYVEALLREIAYYGPHCSDYLVSTVYIGGGTPSWLTEEWMAQIMSAVRRSFRLASDAEISIECNPGTVTDHKFAGYRNAGINRISIGLQSAVDEELKILGRIHTFDQFLKTYELARKNGFDNVNVDIMSSLPGQTAESFARTLQQLLWLKPEHISAYSLIIEKGTPFYDLYKFDAVKQQAGMQTVALPTEDEVYRMTKLTEQVLAEAGYVHYEVSNFAKPGYACRHNIGYWERENYLGLGLGASSLMENIRYSNTRELYVYLEETRHIREGIWENEITDSQGSGASGRVEQLPATNLHASAERITRKGQMEEFMFLGLRMMEGISRERFAQTFGTQIEAVYQEVLLHLTEEGLLEKRAGRIYLTERGQDVSNYALAQFLL
>NC_015977.1|WP_014079092.1|995385_997197_+|elongation-factor-4
MSIDQSKIRNFCIIAHIDHGKSTLADRIIEKTGTLTSREMQAQVLDNMDLERERGITIKSQAVRIIYKANDGEEYIFNLIDTPGHVDFNYEVSRSLAACDGAILVVDAAQGVEAQTLANVYLALDHDLDVMPVINKVDLPSAQPDEVVKEIEDVIGIEAEDAPRISAKTGLNVDQVLEQIVQKIPAPAGDPKAPLQALIFDALYDSYKGVIVFCRIKEGTVRVGDPILMMATGAQSEVTEVGYFGAGQFIPCDELSAGMVGYICASIKNVRDTRVGDTVTNAAHPCEEPLPGYKKVNPMVYCGMYPADSAKYPDLRDALEKLQINDASLQYEPETSLALGFGFRCGFLGLLHLEIVQERLEREFHLDLVTTAPGVIYKVHKTNGEVIDLTNPSNLPDPSEIEYMEEPVVSAEIMVTSEYVGAIMTLCQERRGVYNGMEYLEETRALIKYDLPLNEIIYDFFDALKSRSRGYASFDYELKGYERSELVKLDILINKEQVDALSFIVFKDSAYDRGRKMCEKLKEEIPRHLFEIPIQAAVGGKVIARETVKALRKDVLAKCYGGDISRKKKLLEKQKEGKKRMRQVGNVEIPQEAFMSVLKLDED
>NC_015977.1|WP_014079091.1|994596_995046_+|RrF2-family-transcriptional-regulator
MKISTKGRYALRLMLDLAMNGENNVVRIKDIAERQQISDKYLEQIISVLNKAGYVRSTRGPQGGYSLRKAPEEYTVGDILRLTEGSLAPVACVEEEGSCEREVDCVTVEVWKRLNQAISDVVDHITLADLVALQEEKREKSGLDFGKDI
>NC_015977.1|WP_014079090.1|994162_994585_+|Rrf2-family-transcriptional-regulator
MKITTKGRYAIHILYDLAVNGTEHPVSVKEMATRQEISVKYTEQIISILNKAGYVSSSRGFQGGYRLTKPLDEYVIGDILRLTEGSLAPVECLANAENPCPKQQKCATIMLWEKVDKAIRDVVDHVTLQDLLDWQKQERC
>NC_015977.1|WP_014079089.1|993576_994161_+|DUF3877-family-protein
MNRQDEADYTALKEYLCDMILEEQLKLGYERETIRFYSPSSSIGHVLKLSDRSKPAVLAALEGFGAYAADTLGEVAVSGASGGRICFLIPAAGAEYVHAHGVAHPFLKDLIDCFGRHDVTREQVWELFRHYSKSARIIEIKSDEFDDVCYFEDGNPDSYLYCVKFDEGHAFYHRFLKEDFEELFGEASRMKGAR
>NC_015977.1|WP_014079088.1|993136_993574_+|Fe-S-cluster-assembly-scaffold-protein-NifU
MYSEKVMDHFQHPRNVGEIEDASGVGTVGNAKCGDIMRMYLDIDENQVIRDCKFKTFGCGAAVATSSMATELVKGKTIYEALQITNKAVMEALDGLPPVKVHCSLLAEEAIHAALWDYAEKHNIKIEGLEKPKNDISEGLEEEDY
>NC_015977.1|WP_014079087.1|991925_993110_+|cysteine-desulfurase-NifS
MEKKLIYMDNAATTPVKPEVLDAMLPYFTEKFGNPSSIYSISSENKKAITDAREVIAKTINTTPENIYFTAGGSESDNWALKATADAYASKGKHIITTKIEHHAILHTCEYLETKGFEITYLDVDENGLVKLDELTAAIRPDTILISVMFANNEIGTIEPIAEIGKIAHEHGVLFHTDAVQAYTQVPIDVEAMNIDMMSTSGHKINGPKGIGFLYIRKGVKIKSFIHGGAQERHRRAGTENVTGIIGLAKAAEIATANMKERTAEEIKVRDHLIERIEKEIPYAKLNGDRVKRLPNNVNFSFQFVEGESMLILLDSKGICASSGSACTSGSLDPSHVLLAIGLPHEIAHGSLRLTISDQITMEDADYVVDNLKEIVNHLREMSPLYEDFIKKNK
>NC_015977.1|WP_044024849.1|990415_991687_+|glutamate-1-semialdehyde-2,1-aminomutase
MQYTESERLFEASKKCIPGGVNSPVRAYQAVHRTPVFVERASGSHIYDVDGNAYIDYVCSWGPCILGHAYLRVIKAVQAACENGLTYGAPTGKELKLAELIRSCIPSMEVSRLVSSGTEATMSAIRVARGFTGRDKVVKFRGCYHGHSDGLLVKAGSGALTQSVPDSKGVPADYTKNTLVAEYNQPDSVQKLFETQGKEIAAIIVEPVAANMGVVLPEPGFLEFLRKITEDYGALLIFDEVITGFRLGIGGAQGYFHVTPDLTTLGKIIGGGMPVGAYGGRKEIMDMVAPVGPVYQAGTLSGNPIATTAGIETLTILKETPEIYTQIEASARTLAEGMRGHFGESVCVNQIGSLMSIFFTAQKVKDYETATSSDISRYADYFNYMLDHQIYLAPSQFEAMFVSAAHTAEDIAQTCEVLRGYGR
>NC_015977.1|WP_014079085.1|989683_990376_+|porphobilinogen-synthase
MTQRAIRHIKKRMPELLVIADVCLCEYTSHGHCGLVCEGEILNDETLPLLAKMSVSLVKAGADVIAPSDMMDGRVAAIREALDENDCKNTMLMAYSAKFASGFYGPFREAAHSVPSFGDRRTYQMDPANRREAIRECLSDIEEGADIIMVKPALAYLDVVREVMDRTDYPLAAYNVSGEYAMVKAAAANGWIDERRIVMEIMTGIKRAGAKIIITYHALDVAKWLDEERK
>NC_015977.1|WP_014079096.1|1001036_1002482_+|methyl-accepting-chemotaxis-protein
MEKLHRQNLVIVWCSIIALSLVSLMGYGFTVLAIRGIAILVVAGIISTIGCYLPIDDAKKVLILVFPPAIGTLLYSWVYGGNSIPYLANFVLLAMTTSYFMESVIIYFAVPFAVISVVFMAFSPETIAGIDYTMAGVVTRIFLFIVTAILLYFATKRGAGVVKKTEETLSIVQNNAKVANTISANLNTTIHKSMSSVHALADGSSSVKSAASQMGQVVEDTANATVSVMDKINAATTEINRNHELAVSLDQGFQKVQSAVEKGNGAIQTAKSSILSMEETVDSARQSTDSLLTEMNRITSILGEINSIASQTNLLSLNASIEAARAGEHGRGFAVVADEIRALSEESAKAANNIQEILTWLTDTTGQISKEITAGTDAASASVELVGGLMDYFSNINDATDEASQIVDEEYKIIEHVKEHFGNIQQEIETLVATSEENSATIQNITDTITSQNDSIRSISAEIDEISSLSADLEQHFWEDN
>NC_015977.1|WP_014079097.1|1002544_1003663_+|metallophosphoesterase-family-protein
MKLRFQKDGTFKIMQITDMQEIPAISKDTIALMERAVLEEQPDLVVYTGDQIKGYGVTYKGKGEELEREVAQTIGKLLEPVTKRGIPFAVTFGNHDCQVGISNQDQFYHIYKRLPNCIGEQAEGIDGGGTCAIPIEASDGSGRDVFELYLFDSGTDAREGGYEAFDPKIIAWYRKQREDLREKNGMYVPSIVFQHIPMREYYEVLKLVDRGEKGAVRAYRTHKNEYYKLGETCGAGDIFLEPPSVPDVNTGEFEALSECGEVLAAFVGHDHKNNFVGRYRNIVLGFTPSAGFNVYGNRTKRGVRCIVLSEKKPCEYHTYTRTYEELVGKKVSRPVFDYLTSKAPATFEAAIPMILKAVLFLALVIVLAVLLL
>NC_015977.1|WP_014079098.1|1003736_1004258_+|GtrA-family-protein
MGEIRQEKSGFTAWTDRHAELWKFMKFLLAGGGSNMVELAVHMLLLNTVFAALTVEPVTAHFLNLIGITSKGYLYTYMISTTVGYTIAFILNRKITFNADANPAVSMMLYAVMVLFTIFANGWIGSAMTTWARENDLTGNLCDMAIKVIGMLIPMLWTYPCNRFLIHRKKKRL
>NC_015977.1|WP_014079099.1|1004698_1004944_+|iron-only-hydrogenase-system-regulator
METRIALIGIIVESTESVEQLNHLLHEYGSHIIGRMGIPYREKNVHIISVAIDAPQDVINALSGKIGRLAGITAKTVYSNV
>NC_015977.1|WP_014079100.1|1004967_1006053_+|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydE
MTHEEKIIEHLKTEKMLSVGELDCLLTTEDTETVEKLKAEARMAAQSVYGKQIYIRGLIEFTNYCKNDCYYCGIRRGNACAERYRLTEEQILTCCAAGYELGFRTFVLQGGEDPYFTDEKICGLVSAIKRAYPDCAVTLSIGEKERASYQAYFDAGADRYLLRHETADTVHYGKLHPEEMSLKNRMRCLRDLKEIGYQTGCGFMVGSPYQTTETLYEDLMFIKELGPAMVGIGPFIPQKDTPFGGETAGTLEMTLRLLSILRLMNPHVLLPATTALGTIHPQGREMGILSGANVVMPNLSPVSVREKYKLYDNKICTGDEAAECRFCMQRRMESIGYEVVTDRGDYRPAVYNKNKNTDREA
>NC_015977.1|WP_014079101.1|1006078_1007503_+|[FeFe]-hydrogenase-H-cluster-radical-SAM-maturase-HydG
MYKYDAKSLKAEEFINDEEIRETLAYADANKDNVELIDAIIAKAGERKGLNHREASVLLACQIPEKIEEVYALAQQIKKDFYGNRIVLFAPLYLSNYCVNGCVYCPYHLKNKHIARKKLTQEEIVKEVTALQDMGHKRLAIEAGEDPVNNPIEYILECIQTIYSIKHKNGAIRRVNVNIAATTVENYRKLKEAGIGTYILFQETYHKESYENLHPTGPKHDYAYHTEAMDRAMEGGIDDVGLGVLFGLEMYRYEFAGLLMHAEHLEAVHGVGPHTISVPRVKHADDIDPTAFDNGISDDIFAKICALIRISVPYTGMIISTRESQAVREKVLPLGVSQISGASRTSVGGYAEPEPEEENSEQFDVSDQRTLDEVVNWLMKMGYIPSFCTACYREGRTGDRFMALCKNMQILNCCHPNALMTLKEYLEDYAGEETKKIGMELIDRELEKIPNPKVKQTAYEHIHDIAEGKRDFRF
>NC_015977.1|WP_044024850.1|1007602_1008826_+|[FeFe]-hydrogenase-H-cluster-maturation-GTPase-HydF
MAVTLNETPGSSRLHIGIFGKTNSGKSALINAFTGQEVSIVANVAGTTTDPVYKAMEVHPLGPCIIIDTAGFGDESELGKSRMEKTRLAAEKTDIALLLVAGNGDAALDEEEMHWYRFLKEHGTPVLFVVGKTDIRSDAQVDKLAAAIRGKTGEEAYPVSAKTGEGMEALKEALIRKLPENYGSRLITGTLVGREDLVLLVMPQDIQAPRGRLILPQVQTLRELLDKKCLVMSVTTDQLIPALAVLKKAPKLIITDSQVFGYVYENKPAESMLTSFSVLFAAYKGDLPYYVEGARHIDALNAHSRVLIAECCTHAPLKEDIGREKIPRMLRKRFGESVAVDIVSGTDFPKDLSGYDLIIQCGACMFNRKYVMSRIERAREQGVPMTNYGVTIAHLTGILDKISMPET
>NC_015977.1|WP_014079103.1|1008915_1009365_+|hypothetical-protein
MKYTTTDELEHFSFTEAYIADVQVTGGFFHMTLSNVTILPENSCNRDIREMRANDLVLKIEEPVIRSLVREGYKVYDANGILMRTCEDEMVNEAAWNETIRSFADGTLYALKRDGENYIFEIDAPDEEEYVLAVSGTHNTASWDRFLNK
>NC_015977.1|WP_014079104.1|1009526_1010132_+|cytidylate-kinase-like-family-protein
MSRIITIGREFGSGGREIGKRLSDELGIAYYDNEIISQIADRTKLAEGYVQHVMENGPSTLYPITIGRSFYMGVDPIMEQNNAIYREQSRLIQEFAEKSDCVIVGRSADYILREKHPFRLFVYAEMEHKMERCKKRAPESEHFTDKELKRHILDVDKRRARYYQFFTGQTWGDRLNYDLCINTSNYDIKELVHAIAHLVEA
>NC_015977.1|WP_044024851.1|1010211_1011579_+|sodium:alanine-symporter-family-protein
MALLQHAVAVAREYLWGFPMLALLFGTHLYFTFHLGFIQKKIPLGIRLSLTGTKNQEKDQVTPYSALATALAATIGTGNIVGISTAIAIGGPGAVFWCWLTGVFGIATCYAECYLSIRYRVRRTDSTFAGGPMYILDRRLKKRKLAAAFAVCTLLASFGIGSSVQSYSIRTALQHQITVSPHLVGMAVGGLAGIIIIGGNSQIAKVCMWLVPLMSAFYVGGCLYIIGRNRAVLPETLALILSSAVCPKAVAGGCTGGALLLGIQTGVSRGLFTNEAGLGSIPMVAATAASSSDSPKEAAVRQALISMTGPFWDTVVLCAITGIAAVGSMVSHPQEYRGVAPENMCFVAFRELPVGGEWMLSISLTLFAFATIIGWNVYGTCAVRYLWGEAGVRVYQVAYMFFAYLGAVLSMELVWGISDLLNSLMALPNLLCLWMLRGEIATDCGKGTDKTSKKK

Crispr_ID: NC_015977_6

• CRISPR_ID: NC_015977_6
• CRISPR_location: 1044685-1044819
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NC_015977_6

Consensus_repeat	Method
GCGGGAAGCAGTTCCGGAAGCAG	CRISPRCasFinder

spacers of NC_015977_6

>6.1|1044708|41|NC_015977|CRISPRCasFinder
CCCGCAAAGCGGCAGAAAAACAGGAGGTGAAAAAATCCGGC
>6.2|1044772|25|NC_015977|CRISPRCasFinder
TTCCGGAAGCAGCGCGGGAAGCAGT

CRISPR arrays and Neighbor proteins around NC_015977_6

CRISPR arrays

The CRISPR arrays of NC_015977_6

>merge|NC_015977|6|1044685-1044819|CRISPRCasFinder
TGCGGCAGCAGAACAGGAAGCAGCCCGCAAAGCGGCAGAAAAACAGGAGGTGAAAAAATCCGGCGCGGGCAGCAGTGCGGGAAGCAGTTCCGGAAGCAGCGCGGGAAGCAGTTCCGGAGGCAGCGCGGGAAGCGG

>NC_015977|6|6|1044685-1044819|CRISPRCasFinder
TGCGGCAGCAGAACAGGAAGCAG	CCCGCAAAGCGGCAGAAAAACAGGAGGTGAAAAAATCCGGC
GCGGGCAGCAGTGCGGGAAGCAG	TTCCGGAAGCAGCGCGGGAAGCAGT
TCCGGAGGCAGCGCGGGAAGCGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014079124.1|1041066_1041855_+|DUF134-domain-containing-protein	unknown	unknown	gnl|CDD|224261
NC_015977.1|WP_014079120.1|1028206_1030315_+|cadherin-like-beta-sandwich-domain-containing-protein	unknown	unknown	gnl|CDD|378939
NC_015977.1|WP_014079126.1|1042529_1042733_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079119.1|1025897_1028183_+|SH3-domain-containing-protein	unknown	unknown	gnl|CDD|226656
NC_015977.1|WP_014079125.1|1041876_1042497_+|DUF4317-family-protein	unknown	unknown	gnl|CDD|379500
NC_015977.1|WP_014079122.1|1032927_1033338_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079118.1|1025558_1025771_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079121.1|1030353_1032807_+|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl|CDD|223616
NC_015977.1|WP_014079129.1|1045309_1046233_+|ROK-family-protein	unknown	unknown	gnl|CDD|366120
NC_015977.1|WP_014079130.1|1046366_1048007_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|237894
NC_015977.1|WP_014079123.1|1033514_1034885_+|DNA-repair-protein-RadA	unknown	unknown	gnl|CDD|236994
NC_015977.1|WP_044024853.1|1048268_1051406_+|EAL-domain-containing-protein	unknown	unknown	gnl|CDD|238923
NC_015977.1|WP_014079137.1|1061027_1061513_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NC_015977.1|WP_014079138.1|1061644_1063837_+|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl|CDD|236436
NC_015977.1|WP_014079127.1|1042826_1043597_+|cell-wall-hydrolase	unknown	unknown	gnl|CDD|377847
NC_015977.1|WP_014079132.1|1051546_1055092_+|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl|CDD|131231
NC_015977.1|WP_014079134.1|1056072_1056582_+|HD-domain-containing-protein	unknown	unknown	gnl|CDD|214679
NC_015977.1|WP_014079136.1|1059153_1060902_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NC_015977.1|WP_014079135.1|1057219_1059154_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NC_015977.1|WP_044024612.1|1055251_1055983_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014079124.1|1041066_1041855_+|DUF134-domain-containing-protein	gnl|CDD|224261	COG1342, COG1342, Predicted DNA-binding proteins [General function prediction only].	3.93455e-29
NC_015977.1|WP_014079120.1|1028206_1030315_+|cadherin-like-beta-sandwich-domain-containing-protein	gnl|CDD|378939	pfam12733, Cadherin-like, Cadherin-like beta sandwich domain. This domain is found in several bacterial, metazoan and chlorophyte algal proteins. A profile-profile comparison recovered the cadherin domain and a comparison of the predicted structure of this domain with the crystal structure of the cadherin showed a congruent seven stranded secondary structure. The domain is widespread in bacteria and seen in the firmicutes, actinobacteria, certain proteobacteria, bacteroides and chlamydiae with an expansion in Clostridium. In contrast, it is limited in its distribution in eukaryotes suggesting that it was derived through lateral transfer from bacteria. In prokaryotes, this domain is widely fused to other domains such as FNIII (Fibronectin Type III), TIG, SLH (S-layer homology), discoidin, cell-wall-binding repeat domain and alpha-amylase-like glycohydrolases. These associations are suggestive of a carbohydrate-binding function for this cadherin-like domain. In animal proteins it is associated with an ATP-grasp domain.	7.54325e-11
NC_015977.1|WP_014079119.1|1025897_1028183_+|SH3-domain-containing-protein	gnl|CDD|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	2.47369e-17
NC_015977.1|WP_014079132.1|1051546_1055092_+|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl|CDD|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NC_015977.1|WP_014079125.1|1041876_1042497_+|DUF4317-family-protein	gnl|CDD|379500	pfam14199, DUF4317, Domain of unknown function (DUF4317). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 225 and 451 amino acids in length. There is a single completely conserved residue P that may be functionally important.	2.68691e-38
NC_015977.1|WP_044024853.1|1048268_1051406_+|EAL-domain-containing-protein	gnl|CDD|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.84766e-80
NC_015977.1|WP_014079121.1|1030353_1032807_+|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl|CDD|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NC_015977.1|WP_014079129.1|1045309_1046233_+|ROK-family-protein	gnl|CDD|366120	pfam00480, ROK, ROK family.	1.75606e-71
NC_015977.1|WP_014079130.1|1046366_1048007_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NC_015977.1|WP_014079123.1|1033514_1034885_+|DNA-repair-protein-RadA	gnl|CDD|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NC_015977.1|WP_014079137.1|1061027_1061513_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.33149e-10
NC_015977.1|WP_014079138.1|1061644_1063837_+|anaerobic-ribonucleoside-triphosphate-reductase	gnl|CDD|236436	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_015977.1|WP_014079127.1|1042826_1043597_+|cell-wall-hydrolase	gnl|CDD|377847	pfam07486, Hydrolase_2, Cell Wall Hydrolase. These enzymes have been implicated in cell wall hydrolysis, most extensively in Bacillus subtilis. For instance Bacillus subtilis steB is expressed during sporulation as an inactive form and then deposited on the cell outer cortex. During germination the the enzyme is activated and hydrolyzes the cortex. A similar role is carried out by the partially redundant Bacillus subtilis CwlJ. It is not clear whether these enzymes are amidases or peptidases.	3.44624e-16
NC_015977.1|WP_014079134.1|1056072_1056582_+|HD-domain-containing-protein	gnl|CDD|214679	smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).	2.10496e-07
NC_015977.1|WP_014079135.1|1057219_1059154_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.90004e-172
NC_015977.1|WP_014079136.1|1059153_1060902_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.47651e-172

Protein sequences

>NC_015977.1|WP_014079127.1|1042826_1043597_+|cell-wall-hydrolase
MNRKILDVTMLCTLCICLMVAANIEEKNTIRESREEISSAYVISAADGTEVPVAGVCRVLSGYSFTTESDEATGITKNPRTMVASAAPSDAAQEVQAASEKAETPEAKVQAASEEAEAPEAAESKPATAETTAGAENRWNITLTQEEIDLLAKIVWLESQGEPTEGQEAVVEVVFNRMASEKYPDTLYDVLSQGNPTQFCSWKNRERANPTEKEYTSIHEVLNGNTHILRNDTLYFSTEPLTPRLDQKIGGHSFCY
>NC_015977.1|WP_014079126.1|1042529_1042733_+|hypothetical-protein
MAGFATAETAQEYWKEYRKHPVSGCFFCEFEQFYFNTSKHSSEVLDTTEHAFAAFLGKCKEKFSGIL
>NC_015977.1|WP_014079125.1|1041876_1042497_+|DUF4317-family-protein
MINREDMLELTRRMTPSRTSFTRVAGGYMEPDGEIDESFNVNFLNLSAAEKEKNLAIAKAVPFAATNVNLRSYAFGDGAEQRKMRQLLYGMRECGLKNDALLYTFYELVGARYRSREPYAILVFHDRYDVPVKASDKERQGESEEVYEYLIGAVAPLVGEYEPGRPVCGFLYPAFADRSTDDAHVAIFQADPEHKIPVFEELFLTR
>NC_015977.1|WP_014079124.1|1041066_1041855_+|DUF134-domain-containing-protein
MARPTKARRICMEAAYDNFCPNGVPAREKVIMTMDEYETIRLVDLEKCTHEQCAKQMGIARTTVTEIYESARYKMADSIVNGKTLEISGGNYRLCDGTALFCCNKICRRTSTSVGKDDIQRKETDRMRIAVTYENGEIFQHFGHTEQFKLYDIENSQVVRSQIVDTNGQGHGALAGFLTEAGADVLICGGIGGGAQSALATAGIKLYGGVSGAADEAVEAYLAGKLDYNPDVRCSHHEHEHSCAEHKCGEDKHGCAGNEMLS
>NC_015977.1|WP_014079123.1|1033514_1034885_+|DNA-repair-protein-RadA
MAKGKTTVYFCQECGYESAKWMGQCPACHEWNTFVEETVEKKTARGNRSTDGSREAKAVPLSQIEMTQEQRVSTGMKELDRVLGGGIVQGSLVLVGGDPGIGKSTLLLQVCRNLAEHEVKVLYISGEESLQQIKIRAERIGTFGDSLSLLCETNLDTIRRVIDREKPEIVVIDSIQTMYNEDVSSAPGSVSQVRESTGTLMQIAKGLGISIFIVGHVTKEGVVAGPRVLEHMVDTVLYFEGDRHAAYRILRGVKNRFGSTNEIGVFEMRGDGLTEVENPSEFMLSGKPEGASGSVVACSMEGTRPILLEIQALVCHSNFGMPRRTAAGTDFNRVNLLMAVLEKRLGLSLGNCDAYINIAGGIRMNEPAIDLGLVLAIVSSYKDRPIDEKTICFGEVGLSGEVRAVSMAEQRVLEAKKLGFKTCILPEVCRESLKEIKGIGLVGVRTVKDAMDYVMR
>NC_015977.1|WP_014079122.1|1032927_1033338_+|hypothetical-protein
MAVISELLRSEEDGTISFGDYTLSTKAKLDNFEHQGDLYKVKTCQEITKLERNGMFVYESVPGTAVEHLKATDTGMEFSVEGAEDAQVTVELEDEAEYDIVIDGADAGRMKTNLGGKLSLSVELGDAPVKVSVQKC
>NC_015977.1|WP_014079121.1|1030353_1032807_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MQTAYTAKAKKAIDIATRISKSLHHSYIGTEHILLGLLKEGTGVASQVLADNGVEYDKVLELIEELIAPGNAVAVLEDGLSPRAAHVLEVSKAEAARFHSEKIGTEHLLIAMIKETECVASRLLNTLSVNVQKMYVDTLIAMGEDVSQYKDEFQNGKPGKRRNAEGTPALDQFSRDLTELARAGKLDPVVGRETEIDRVIQILSRRSKNNPCLIGEPGVGKTAIVEGIAERIAGGMVPDTVLGKRVVSLDLSGIVAGSKYRGEFEERIKKVLAEVAKAGNVLLFIDEIHTIIGAGGAEGAIDASNILKPALARGEVQVIGATTIEEYRKYIEKDAALERRFQPVVVEEPTEEEAISILKGLRGQYESHHHVTITDEAVEAAVRLSARYINDRFLPDKAIDLMDEAAAKVRLHVGGDPKEAAELRREIAELQETLEEALSGGDLETARESQAKRQELEEKLEKLNTKAKQGGRRHHQTVGEDEIADVVSGWTKIPVKKLTEGEAARLKKLEATLHKRVIGQEEAVSAVAKAVRRGRVGLKDPKRPIGSFLFLGPTGVGKTEISKALAEAVFGQEQAMIRIDMSEYMEKHSVSKMIGSPPGYVGHEDGGQLSEKVRRNPYAVILFDEIEKAHPDVFNILLQVLDDGHITDSQGRKVDFKNTIIIMTSNAGAQAIVEPKKLGFASGNDEKQNYERMKGSVMEEVRRIFKPEFLNRIDETIVFRALNKDDMKQIVGLMTKELAKRCETQLGITLVVRDAAKQYIVDKAYDPKYGARPLRRKIQDEIEDPLAEKLLDGSIRRGDEVIVTTKKNAIFLESKKK
>NC_015977.1|WP_014079120.1|1028206_1030315_+|cadherin-like-beta-sandwich-domain-containing-protein
MKKKIAMMMMALSLTFGVVGVPQTVFAASGSTSVSVSSGSVNIGDTVTVTVKASGPSGEKANATMTLSYDSSVLQFVSCNTTYGGGGGSVMATGESYTVTLKAVSAGNSSLSVSANDGVIFDSNEEMDSMSGSSASVTVKNAASTNTDSGNNSSSNSGTSNGNGTSAGGNGDSAANTGETTGKQSADNSLKELTISTGTLSPAFNGKTLTYSATVGSDVTNIAVSATPVNEKAVVESVTGNTNLKSGDNTIKIVVKAENGVTATYTVNVTKQGTSSGETTASDEGEVETTEETDSSENTVTANGISYVIAENFATENVPADFSETTVNYQGADYRGVSYDKGSVVMLYLVQDGAEESTGSFFVYDSTRDTLYPFVKMVNGEHYVIALLPPVDYTMPDTMQQTQLTLADGSLVTAYQETQEEGSEVESEFYTFYGVNSDGTEGWYQYDSIEETYQRVNTGTTVSSDGLQDEDAAYLQEEYLALSEKYKKEKAFSRTAIGILIFLLAVMAVVLVNLLLHRREADRDDLDEDDIMDDGVSEHDDTEELLDENQDDVIEEPEKDSRKKWHWKKRSAADAGDADEFDEQEEREEKTKTQESDDDAFDDAFDEDDIEEEEPPKKRFGFWKRKSDDLDDDLFDDDDAYEDDDAYGDDDDTYGDDDAYGDDDDTYGDSDAPDDEKEKVSGGKDQKNKQDDELDIIDFNDL
>NC_015977.1|WP_014079119.1|1025897_1028183_+|SH3-domain-containing-protein
MNHFIYRKKRKILLAAISMGVLAASISAFHGPEAVYAYTATAGTINDGPVKVRNAPVTGDKLTLLYPGNAVTVTDETAGSDGYTWYQIQMSDGVTGYIRSDFVTLQGTDSSAGQTNADSSAGGTNGVVQNTEKGVYVRSGAGTSYSVVTKVYKGQAVNVGELVSAGGMNWYSVTLVVGGASYSGWICADYVAVNGQTSDDQSQGETTGVTDSEYEAALAAAGFPASYCSALASLHQKYPNWQFVPVQTGLDWNTVVSNESLVGRNLIQNSVNDARKSTDSQAYNWETNKWYGFDGASWVSASPEYIAYCIDPRNFLNENQIFQFETLEYAGYQNAAGVQSVLSNTFMAGNYTDTDGAVRSYADTFVEIGSNVGVSPYHLASRCKQEQGVRGTSDLISGRYSNYAGYYNYFNVRAFTTGSASAIVNGLEYAKLQGWNSIYKSIAGGSSVVADNYVKKGQNTIYFEKFNVVYTNSLYAHQYMTNVQAAMSEGTNMGKAYTDKNQAFVFRIPVYQNMPESAVTFADKGNPNNWLSSITVDGYALTPAFSGANTSYSLVVPDSAASINVGATAVAGTSTVSGTGNYSLNYGDNTIQITCISQSGDSRTYTLIVARAGGSAGGTIQVADDAAITPSYPIGTYVTGIEPGTSASTVASGIGTQNCTVKILNADGSENTQTVGTGNKLAVYVGDTLVQQYEIVVYGDINGDGKVSNLDLVLMQKQILGIESQSGSRLEAANVSKDGGISNKDLVILQKHILGISQIDQ
>NC_015977.1|WP_014079118.1|1025558_1025771_+|hypothetical-protein
MKTVDMELILLCALIAAIGAFGLVTGVVLLFGIQFQECNAVLLTGIVCGLWGILWGSLLIQNRNLMSKNV
>NC_015977.1|WP_014079129.1|1045309_1046233_+|ROK-family-protein
MRIGGIEAGGTKMVCAIGEVQTDKGQPGENQVTITERVTIPTEKPKITLPRMAAFFEGKGISSLGIGCFGPVDLHRASPTYGYITSTPKLEWQNVDMVGTFTRALGVPVGFDTDVNAAVLGEVTWGAAKDCDTAIYITVGTGVGVGVYCNGALMHGLVHPEAGHLLLQRHPKDTYAGKCPYHANCLEGLASGPAVEARWGRPAKELADREDVWEMEAFYLAEAVANYVLTYSPQKIVLWGGIMHQSQLFSMVRTKVQELLGGYISNEKILKEIDTYLVPPALGENPGIMGAFALGMREAEYRKPKEA
>NC_015977.1|WP_014079130.1|1046366_1048007_-|ATP-binding-cassette-domain-containing-protein
MISTSNITLRIGKKALFEDVNIKFTEGCCYGLIGANGAGKSTFLKILSGQLEPTSGEVIITPGQRLSFLQQDHFKYDEYTVLDTVIMGNKRLYDIMKEKDAIYMKEDFTDEDGIRASELEAEFADMDGWNAESDAATMLNGLGIPTEDHYTLMADMPSALKVKVLLAQALFGNPDILLLDEPTNHLDLDAISWLEEFLINFENTVIVVSHDRYFLNKVCTNIADIDYGKIQLYAGNYDFWYESSQLLVKQMKEANKKKEEKIKELQEFISRFSANASKSKQATSRKRALEKIQLDEIRPSSRKYPYIDFRPNREIGNEVLTVEGITKTIDGVKVLDNVSFIVGHDDKIAFVGSNELAKTTLFKILAGEMEPDSGTYKWGVTTSQSYFPKDNTEIFDTDLLIVDWLTQFSEIKDATYVRGFLGRMLFAGDDGTKKMRVLSGGEKVRVLLSRMMIMGSNVLILDEPTDHLDMESITALNNGLIKFPGVILFASRDHQVVQTTANRIIEFLPDGTFVDKVSTYDEYLENDEMARKRQVYSMSSDDEGDN
>NC_015977.1|WP_044024853.1|1048268_1051406_+|EAL-domain-containing-protein
MERGQRKDLIGKMPVGIAVVRGGNELYIEMVNREFLHAEGYDREELTGNTPFVEYLYRDDTGVFEDAIEVCRELRTTEEIELRIRTKSGGVCWELMRCRLYYYRDAVPYYILASWNIDKRKNLEEELRLMEEQYSMLEEVTDEFPLEYDVAQRRFRVPRKYRGNGQPGTAGRRYMDYEEMLADICEEDRAAYARVLEAASRDVRTGSIDYRMNVAAAGEEPVYVWYRTIYRSIVGDNGQIIRIIGRSYDVSSDRRIQEELSEEAKRDPLTRLYNKVAASGEVERILKSEPEKQHVLFLIDIDNFKRINDTFGHTVGDTVITDIAGVLQSQFQETDVTARVGGDEFLALMRDVAPKEAEACAAALGREARKKLIGDDAIVEVTLSIGMAVYGEDGRDYETLFAMADRAMYATKREGKDHYSFAGKKQQEGAERERRRDRIEYAPESGQKVDKEFLNFAFSLLSHAKDINGSLNVLIEQIGKKYGLGFAMVFEYREEQQEMVLMNYWNRDGSRVEQQVFPQSVTVFREAEIGRFVSTPTEDILTEVPQLGAEKYHGTSIKNCGNVKFEFSGNRSGCLCVGSSSAEGFSKEEAGMLSELARVVAVFVSLRSRQSDDQAEIRHLQNQDMLTELYNLDTFRRLIRKKLKSGGLAQDENMVYALVNLDVNNFAYVNENYGQEAGDSILQELAALIRSESHVVEACRMYSDYFIELVRGTDKKNILGLVEREDQMFGEQLKIRYPAGAMQLSAGICFIDDGEETFEKILEGANLARKLAKEQNVGAVVYRDDMRKKRDEGIRITGRFYAALQRGEFEVYLQPKFLLREERVYGAEALARWRLESGEILSPARFIPALENIGYIVDLDFYILEQLLRAMRRWRDSGRELFTISTNFSRRNFENGGDDFIERLQNTLQRYGIDPCYIEIEVTESVIVEKLDSLKACLTRLGKLGYRIAIDDFGTGYSSLSVLLEIPANVVKIDKSFTDKIHQNGQSAFVYQMGQFIQSAKEEVIFEGIEEEQQRTFLMECGFNYGQGYYFDRPLPLEEFEKKYI
>NC_015977.1|WP_014079132.1|1051546_1055092_+|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MSRAKQSMDGNTAAAHVAYAFTDVAAIYPITPSSPMADTVDQWSAAGQENIFGNQVKVVEMESEAGAAGAVHGSLAAGALTTTFTASQGLLLMIPNMYKIAGEQLPCVFDVSARTVATQSLNIFGDHSDVYACRQTGFAMLCETNPQEVMDLSPVAHLATIEGKVPFINFFDGFRTSHEIQKIEKWDYADLKEMCNMDAVAEFRAHALNPEHPAMRGSHENGDVFFQHREACNTAYNELPAIVEKYMKKVNEKLGTNYDLFNYYGAPDAERVIVAMGSINDVAEEVIDYLTAKGEKVGLVKVRLYRPWVSEAFLKALPKTAKKVAVLDRTKEPGALGDPLYLDVATTLREAGLDTVVLTGGRYGLGSKDTPPSSVFAVYKELEKDAPKARFTIGIVDDVTNLSLPEVKPAPITSAEGTVECKFWGLGGDGTVGANKNSTKIIGDHTDKYIQAYFQYDSKKTGGVTISHLRFGDKPIRSPYYINQADFVACHNPSYVTKGFKMVQDVKPGGVFMINCQWSDEELAHHLNADAKKYIAENNIQLYTINAIDKAIEIGMGKRTNTILQSAFFKLANVMPIDQAVEFMKAAAKKSYGKKGDAVVEMNYKAIDAGVDAVHKVEVPASWKNPEADAAPAELKGLPKTVKMVRDLMEPISLMDGDSLPVSAFKENPDGQFELGAAAYEKRGTAVTVPTWNAEKCIQCNQCAFVCSHATIRPFMLSEDEVKAAPSNIKLADTKPKASEYKYTMSVSPLDCMGCGECITVCPVGAIEMVPQESQAEEQPVFDYLVANVGKKPGMPADNTVKGSQFNQPLLEFSGSCAGCAETSYARLITQLFGEHMYISNATGCSSIWGGPAATSPYTVNKDSKKGPAWANSLFEDNAEHGLGMEIGQKVLREQAIASAEKCATSDKASAELKAAFDKFVETKNDTKANTPAAAALVAELEKAAAAGCPDAKAAVEKKDYLAKKSVWIFGGDGWAYDIGFGGLDHVLASGENVNVMVFDTEMYSNTGGQASKASNIGEVCQFAASGKEVGKKSLAEIAMSYGYVYVAQIALGANMAQAVKVIAEAEAYNGPSLIIGYAPCELHGVKGGMNHCQDEMKKAVAAGYWNLFSFNPQLKAEGKNPFTLTSKPGDGSYQDFLNNETRYSRLTRAFPERAERLFKASEEAAKARYEHLQRLVELYK
>NC_015977.1|WP_044024612.1|1055251_1055983_+|hypothetical-protein
MMQLSREKKHFLHCKYRVALACLTAVSLIGGCGYHKSYHLERKYGDVLKSFLPDGYEITRTEKEDKVNGKHYYTSNNHPTLDGYVYDTYDYYSIDYGYNNSHSWYISTYLVANGTYEDDDWMASQVWGQIIYEIERLIRSTTTTYKYEDENGDSQNFGAVCTLHGMELYCDMDDLEILNNPTGINLAEFTWDDVRSLGNPEIKMYAKSSTNKDALQEDVIQGVQEAIQEDAGDGIVITIEVDR
>NC_015977.1|WP_014079134.1|1056072_1056582_+|HD-domain-containing-protein
MDRKKKRIHLSKENEKVFREILTEVCKNSRFLSSSRFMQHGSTSVFRHSVAVAYVSFYIAEKYRIRVNCHALIRGALLHDYFLYDWHEKDDSHKWHGFYHAGKALQNAMEDFELSEIEKETIRRHMFPLNPIPPCCREAWIVTLADKICSGGETVEGFWEKFEEIRNPS
>NC_015977.1|WP_014079135.1|1057219_1059154_-|ABC-transporter-ATP-binding-protein
MPQNEKNAKPIGGPGGRGGHGPRPNVKNPGKLFMRLLSYIMKNYAVHCVIVVICIFITVLASVQGTWFMQTLIDGYILPLMKQSDPDFSGLAHAILRVAVFYGIGAIAAYIYTRIMVNVSQGTLKHLRDDMFTHMEELPIRYFDTHSHGDIMSTYTNDIDTLRQMISQSMPQFLNSIISIVSVFISMLLLNIPLTLVTLVMVGVTLFATKKIGALSARYFIAQQKDIATVNGYIEEMMNGQKVVKVFTHEEESIADFNRLNDQLFHSADNANKFGNILMPVNAQIGNISYVLCAIVGGILALGGYGGFTLGKLASFLTYNKSFGQPINQLSMQLNNIVMALAGSERIFALLDEQPEVDDGYVTLVRARQENGQIVESKERTGMWAWKHTHQADGSIDYIELKGDVVFDDVDFGYVPEKTVLHNVDLYATPGQKIAFVGSTGAGKTTITNLINRFYDIQDGKIRYDGININKIKKDDLRHSLGIVLQDTHLFTATVMENIRYGKLDATDEEVMAAARLANADTFIQQLPNGYDTLLTGDGANLSQGQRQLLAIARAAIADPPVLILDEATSSIDTRTEKIVQDGMDKLMAGRTTFVIAHRLSTVRNSDCIIVLEQGRVIERGSHDQLIEKHGKYYQLYTGNLAEG
>NC_015977.1|WP_014079136.1|1059153_1060902_-|ABC-transporter-ATP-binding-protein
MLKTLGAQIREFKKDSLLTPVFMILEVFMETIIPLMMASIIDQGVEAGNIHHIYVMGAWMVVAACFSLFCGVMGGKYGARASAGFARNLRKAMYENIQSFSFSNIDKFSTAGLVTRLTTDVTNLQNAYQMLLRMCVRAPISLICAMCMAFFISPRLASIYLVAVIILGIILAIITVRAHHYFMEVFPKYDDLNASVQENVSAIRVVKAYVREDYEKNKFRKASQNIYNMFVKAESILAFNNPVMQITVYSCILAISWVGAKMIVGGTLTTGELMSLLTYCMNIMMSLMMLSMVFVMLAMSVASAERICEVLNEKSDITNPENADKTVPDGSITFDHVTFRYSRTSAKPVLSDIDLSIKSGETIGIIGGTGSSKSSLVNLISRLYDVSEGRVLVGGKDVRSYDLDTLRNEVSVVLQNNVLFSGTIYENLRWGDEHATDEECRHACELACADEFIERFPDGYNTYIEQGGTNVSGGQKQRLCIARALLKKPKILILDDSTSAVDTATDAKIRRAFLTEIPNTTKLIIAQRISSVQDADRIIVLDNGELNGFGTHEELLQTNAIYRDVYESQTGGGGDFDEGGAA
>NC_015977.1|WP_014079137.1|1061027_1061513_+|MarR-family-transcriptional-regulator
MERIKRSETIGYKIRLLHNQLHKNMEAKREENEDNLTGMQRWTLGFLKDHADREVYQRDIEEAFSVSRATASNMLAVMERKGLIERAQVSHDARLKRLVLTDKAAALLDGAERDIREMEARLTAGLSEEDVEHLKRCLDQMLQNLDVTIAEDTRCCCKPKQ
>NC_015977.1|WP_014079138.1|1061644_1063837_+|anaerobic-ribonucleoside-triphosphate-reductase
MKIIKRSGSEDIFDISKIEAAIRKANDSVIDYEKLGDDKIQAILSNVEKACENMKRSPSVEEIQDMVENQIMSQKAFNVARNYITYRYKRELVRKSNSTDEQILSLLECNNEEVKQENSNKNPTVNSVQRDYMAGEVSKDITRRFLLPPEIVEAHEKGIIHFHDADYFAQHMHNCCLVNLEDMLQNGTVISETMIDTPKSFSTACNIATQAIAQIASSQYGGQSISLSHLAPFVQVSREKFRKQVRKELETAGIEATEEKVNQMAEMRVKEEINRGVQMIQYQVITLMTTNGQAPFITVFMYLDEVPEGQLRDDLAAVIEEMLHQRILGVKNEQGVYITPAFPKLIYVLEEDNIREGSKYWYLTRLAAECTAKRMVPDYISEKMMKKLKDGDCYTCMGCRSFLTVDRTTGNLAHAKNYKEGKHKYYGRFNQGVVTLNLVDAACSSGGDEKKFWEIMDERLEMCYQALMIRHNRLKGTPSDVAPILWQNGALARLKKGETIDELLYHGYSTISLGYAGLCECTRYMKGVSHTEPEGTEFALAVMRRLNDACAKWKKETDIDFSLYGTPLESTTYKFAKCLQKRFGIIPGVTDKNYITNSYHVHVTEQINAFDKLKFESQFQELSPGGAISYVEVPNMQNNLEAVLSVMQYIYENIMYAELNTKSDYCMECGYAGEIKIVTDRDGKLVWECPNCGNRDQNKMSVARRTCGYIGTQFWNQGRTQEIKERVLHL

Crispr_ID: NC_015977_7

• CRISPR_ID: NC_015977_7
• CRISPR_location: 1074818-1074893
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_7

Consensus_repeat	Method
GGCCTGGCAGGTGGACGGCTATTA	CRISPRCasFinder

spacers of NC_015977_7

>7.1|1074842|28|NC_015977|CRISPRCasFinder
AGACTGTGTCATGCCTGAGGCGTCCCAG

CRISPR arrays and Neighbor proteins around NC_015977_7

CRISPR arrays

The CRISPR arrays of NC_015977_7

>merge|NC_015977|7|1074818-1074893|CRISPRCasFinder
GGCCTGGCAGGTGGACGGCTATTAAGACTGTGTCATGCCTGAGGCGTCCCAGGGCCTGGCAGGTGGACGGCTATTA

>NC_015977|7|7|1074818-1074893|CRISPRCasFinder
GGCCTGGCAGGTGGACGGCTATTA	AGACTGTGTCATGCCTGAGGCGTCCCAG
GGCCTGGCAGGTGGACGGCTATTA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014079139.1|1063908_1064427_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl|CDD|379137
NC_015977.1|WP_014079157.1|1082696_1083560_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079155.1|1081062_1082145_+|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl|CDD|225364
NC_015977.1|WP_014079158.1|1083575_1084214_+|J-domain-containing-protein	unknown	unknown	gnl|CDD|274090
NC_015977.1|WP_014079143.1|1066937_1067069_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_044024855.1|1085587_1086226_+|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl|CDD|271355
NC_015977.1|WP_014079140.1|1064508_1064760_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079151.1|1074929_1076735_+|DNA-primase	unknown	unknown	gnl|CDD|235551
NC_015977.1|WP_014079153.1|1078030_1078753_+|SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|378972
NC_015977.1|WP_014079148.1|1072550_1073117_-|cytidylate-kinase-like-family-protein	unknown	unknown	gnl|CDD|379060
NC_015977.1|WP_044024613.1|1067253_1068009_+|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl|CDD|133475
NC_015977.1|WP_014079141.1|1064850_1066092_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079154.1|1078793_1080476_+|nucleoside-kinase	unknown	unknown	gnl|CDD|238986
NC_015977.1|WP_014079152.1|1076818_1078027_+|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl|CDD|236413
NC_015977.1|WP_014079159.1|1084500_1085553_+|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl|CDD|234621
NC_015977.1|WP_014079149.1|1073151_1073661_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079156.1|1082262_1082670_+|hypothetical-protein	unknown	unknown	gnl|CDD|372587
NC_015977.1|WP_044024614.1|1069549_1072201_+|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl|CDD|227334
NC_015977.1|WP_014079146.1|1068042_1069542_+|methyltransferase	unknown	unknown	gnl|CDD|223971
NC_015977.1|WP_014079142.1|1066227_1066848_+|flavodoxin-family-protein	unknown	unknown	gnl|CDD|223728

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014079139.1|1063908_1064427_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl|CDD|379137	pfam13353, Fer4_12, 4Fe-4S single cluster domain. This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.	3.2706e-74
NC_015977.1|WP_014079148.1|1072550_1073117_-|cytidylate-kinase-like-family-protein	gnl|CDD|379060	pfam13189, Cytidylate_kin2, Cytidylate kinase-like family. This family includes enzymes related to cytidylate kinase.	9.20968e-41
NC_015977.1|WP_014079158.1|1083575_1084214_+|J-domain-containing-protein	gnl|CDD|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	5.39918e-25
NC_015977.1|WP_044024855.1|1085587_1086226_+|nucleotide-exchange-factor-GrpE	gnl|CDD|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	1.02379e-47
NC_015977.1|WP_014079151.1|1074929_1076735_+|DNA-primase	gnl|CDD|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_015977.1|WP_014079155.1|1081062_1082145_+|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl|CDD|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	8.24339e-69
NC_015977.1|WP_044024613.1|1067253_1068009_+|N-acetylmuramoyl-L-alanine-amidase	gnl|CDD|133475	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.	3.86754e-33
NC_015977.1|WP_014079154.1|1078793_1080476_+|nucleoside-kinase	gnl|CDD|238986	cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).	4.20968e-66
NC_015977.1|WP_014079152.1|1076818_1078027_+|RNA-polymerase-sigma-factor-RpoD	gnl|CDD|236413	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.	0
NC_015977.1|WP_014079159.1|1084500_1085553_+|heat-inducible-transcription-repressor-HrcA	gnl|CDD|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	7.23164e-109
NC_015977.1|WP_014079153.1|1078030_1078753_+|SAM-dependent-methyltransferase	gnl|CDD|378972	pfam12847, Methyltransf_18, Methyltransferase domain. Protein in this family function as methyltransferases.	2.8025e-78
NC_015977.1|WP_014079156.1|1082262_1082670_+|hypothetical-protein	gnl|CDD|372587	pfam13386, DsbD_2, Cytochrome C biogenesis protein transmembrane region.	0.00805154
NC_015977.1|WP_044024614.1|1069549_1072201_+|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl|CDD|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	3.3216e-93
NC_015977.1|WP_014079146.1|1068042_1069542_+|methyltransferase	gnl|CDD|223971	COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair].	1.39204e-12
NC_015977.1|WP_014079142.1|1066227_1066848_+|flavodoxin-family-protein	gnl|CDD|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	5.18834e-51

Protein sequences

>NC_015977.1|WP_014079149.1|1073151_1073661_-|hypothetical-protein
MVLFLLIILIMISVYWRPMWGILRGLLLGFLFLIGGSSLNIPVPVSFVVFVLYCQLGTPWLRKTNYRQTKATRTFHESTTTDADHSTYTTEQYYYAYEVDGTDYTNVHSIYPYNKKLHAEAKSAECEIFYHPKKPKKMFCPEDIAKDYYTIWILRFLIGGTIIATDFYF
>NC_015977.1|WP_014079148.1|1072550_1073117_-|cytidylate-kinase-like-family-protein
MKITIARQCGSGGHKVADILSEKLGMEIFDKKRFIEESKRRNVYDENANFLNEKPIDSFLYSLIMSYGSKNPRERYIRFVKDVTEQESCIIIGRCANIIYKDDPDCVSVYLHADPDIRKKRIQERDHVSEKEAAETLREVDEKRSAFQEQCTATRWGDGNEYDLCIDTGKIGIEKAAELILQYIEYRK
>NC_015977.1|WP_044024614.1|1069549_1072201_+|bifunctional-diguanylate-cyclase/phosphodiesterase
MALSRGMNQEASQDTDLGLLDATLMQNLQDRFCDANNVYLVCLSRTRGVVTKAYGSKEELAYIHGLTGVERHMTLMNRLLDDGIESVLEEDCGNDLVKMCGVSIKIGGKTAAIWIVIGIMDREGGDVPSYVMRTTPERYDKSLEFLETLSKQMFAVKMEELMAQEAVLKSRESETQMEAELHRNEVMTSIVKMLESENSFEEIVHDILRECCAYMEISRGALLKENKEHSKIEMICEYAAPGMDSVRGEWSGVSREKMPFFNGKPYMISSNSMMPEVFRQFFDAHGLLAGIFLPVEVNTRAEMYLCFLEEHEERNWEVTDVKFVNDVRRIIQSILLKRIAKNSLASSYASLEAILENVGCGIYVKDPVSGRILYSNQRLRAFLPDDAAPDMLENCWREESGGIDTDCFHEIYLEQEKRWFDYHRTGIHWVDGRSVFLYTIYEVTDKKLYQQKIERQANNDFLTGLYNRMRFEQDLAHCIEQTKEFGGEGALLYIDLDDFKHINDGLGHQYGDILLKNISDSLRRIPGVENNCYRMGGDEFIIILAHRQIMMLQKILNDIRTLFSKPWMLKGADYYCTMSMGVVRFPTEGDTVEELIKKADIALYAAKCSGKNRVEFYDENVESTSFRRLDMEKNMRNATNNAFSEFEVVYQPIVDVTRESNPCVGAEALIRWNSGELGLIAPTDFIPLAEYLGLINPIGAYVLEEACKRCKYWNDMGHPDYKVNVNLSVVQLLQNDIVEQVRSVIKRTGIVPENLTLEVTEGLAINDMSRMKKILSEIRALGVRVALDDFGTGYSSLNHIREMPIDVIKIDRCFIIDIGKDEFSAAFVKMVAELAQTIGVHVCVEGVETKEQVDALKQTKIQLIQGFYFGKPLHKEEFDEKYL
>NC_015977.1|WP_014079146.1|1068042_1069542_+|methyltransferase
MIHEYYKELQNNQNIRENLSLLRSECKDPQARETLLSLVGDGALLTGLLESDEPKVRKNAALLLGSLGLLQTAGSLFHAYEREQTLFVRSAYLTALSGMEVSPYLEALKEHRDALLAREIPENEKKHVNEELRELERIITAAEGITRHTFVGFTEPQDFLLATNREQRGVTLEEVKAVSASVRRSEKLHPLGVLVHAKDVRPFASIRTYRELLFPVRTAQPVPEDALGAAEAVWDSNLRELLTQAHRETTPFYFRLEIKSHMPLDKKSTFARRFSAELERLSGRMLVNAPSDYEIELRLLEKRDGGYACFLKLLTIAHGRFAYRKNAVAASIHPATAAMIVALAEPYLKENAQILDPFCGVGTMLIERDIRVPAREKYGIDIFGEAIRGARENASYAGEKINFINRDYFDFTHAYLFDEIITNMPVRGRKSKEETDTFYGRFFEKSAGLLKADGILVLYSNEQGFIRKQLRIRSAYRLLAEQCIREKDQFYLFVIQYKG
>NC_015977.1|WP_044024613.1|1067253_1068009_+|N-acetylmuramoyl-L-alanine-amidase
MREEQEEKYRREERRRYEEKRRRRRKRLRRRRRLRIVLLIGIPLLLVLAVWFGTRQIKKLLYEEKPVMAYEVKYVAQAPDYQVELLDYNEYSRPGTALSQVNGIVIHYTANPGTTAEQNRSYFENLKDTGETYASSHFVIGMDGEIVQCIPCNEIAYASNDRNEDTIAIECCIPDETGEFTDATYQSLIELTAWLMGRYDLTTDDVIRHYDVTGKMCPKYYVEHEDAWLVFKQDLLTYIDVNGIAKNEEIS
>NC_015977.1|WP_014079143.1|1066937_1067069_-|hypothetical-protein
MKYTIDPTMTYSEAVLFYEEYLTAAKAAGKKPVSFLHFITGRY
>NC_015977.1|WP_014079142.1|1066227_1066848_+|flavodoxin-family-protein
MKVILVNGSPREKGCTYTALCEVAGALEKNGIETEIFQVGAKPIAGCIGCNVCLKNGRCFVDDPVNEFVEKAKTADGFVFGSPVHYAAASGAITSFLDRAFYGKGNVFAGKPGAAVVSCRRGGAASAFDQLNKYFTINSMPVVSSQYWNQVHGNTPDEVRQDAEGLQTMRTLGSNMAWLLKCIQAGAAAGITFPEREPAMKTNFIR
>NC_015977.1|WP_014079141.1|1064850_1066092_+|hypothetical-protein
MILKVPSYYEKFHCIADQCKDNCCYGWEIDIDEGTMDYYRSLGGELGKEITSHIREGEENTMIMREDGYCPFLNEKKLCDICIKMGEEALSEICTEFPRFTMEYEDVREKILSLACEEVGNIMFSTDEKITWQEHEMPDFCGTGDDAEAAYDADGALYGNDEAACEDDTSDGEGYDDDEEVSVDADQLNAVSKAAVALLQNREKPVAERAAEYLLYCKRMQQELYGYHTGGEVSGQEQEQRESRLIAECREKEVTPGEAYAAFLARMERYEQLEVLDQNWEEEKKRLRAAFHEDNYLECIRNFHAAQQGREYEYEHLLVYFTFRYFMRSYYDDNILNKAQFAVAGILMIRDMDALRFLENGGTFSVEDRVAVAKLYSKEVEHSEENMEFLEEDFQFEDIFAPEQMIRQLFFAS
>NC_015977.1|WP_014079140.1|1064508_1064760_+|hypothetical-protein
MKITWKALLALFFYTLGVVGWFYVGGWMILRGPVRGVILAHMAGDLSLIKLAVALVQGFVYLSLAGGVWCIGYMLSDHFRKDE
>NC_015977.1|WP_014079139.1|1063908_1064427_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MNYSAIKYCDIANGTGVRTVLFVSGCRNHCKDCFQPETWAFEYGNPFTGEVEDEIIASLKPDYIRGLTLLGGDPFEPENQKALLPFMRRVKAECPGKDVWAYTGYVLDRDLVPGGKCCTADTAELLHMIDVLVDGPFVTELHDISLLFKGSSNQRVIDCAEYCRSGEIRELM
>NC_015977.1|WP_014079151.1|1074929_1076735_+|DNA-primase
MPRYSDELIEEVRSRNDIVDVISQYVRLSKKGSTYFGLCPFHNEKTGSFSVSPNKQMYYCFGCHAGGNVFTFLMQYENYTFGEAMEALAERAGVDLPKQEYTAAQRQEADRRARLLEINKEAAKYFFVLLRGERGKRALDYFKKRALSDETIHKFGLGYSDQYSDDLYRYLRSKGYDDEILKDSGLVTIDEVRGGHDKFWNRAMFPIMDVHNKVIGFGGRVMGDGEPKYLNSPETKIFDKSRNLYGLNFARATKKPQLLLCEGYMDVIALHQAGFDNAVASLGTALTSGHANLLKRYTKEVYLTYDSDGAGIKAALRAIPILKEVGITTKIINMKPYKDPDEFIKALGAEAYQERIDQAENSFLFEVRMEEQQHDMHDPEGKTAFYNAVAKMLCGFTEKLERDNYIEAVAAKYMISSDDLRRLVNQQGLKAGLAGGGRASQSVADAQDGARTEYKKSAKKREDGMVQSQKLLLTWLTNSPALFPKVQRYVGADDFTDPICHSVAKMLFEQYEKDGTVNPARIISTYEDEEQQREAAGILNATIHRVDTREEREKALRETVIRVRENSINHKLANTFDVQEMAALAKEKNELPGTVHIPLEE
>NC_015977.1|WP_014079152.1|1076818_1078027_+|RNA-polymerase-sigma-factor-RpoD
MAKKKENTDNKEVLGENKENSAAKTADAGAENGVASAQEKFQIKLRELLALAKKKKNMLEYQEISDFFSDMQLDAEQFEKILDFLEANNIDVLRITDDDVDDEMLLDVDDEDEIEVEKIDLSVPDGVSIEDPVRMYLKEIGKVPLLSAEEEIELAKRMELGDQEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMNMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLEEVLGTLTEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYLE
>NC_015977.1|WP_014079153.1|1078030_1078753_+|SAM-dependent-methyltransferase
MVKISERLRTAAGLIGEGERLADVGTDHGYVPIYLVERKHIPSAIAMDIRTGPLERAREHIRMYGMEDYIQTRLSDGVAALKPGEADTILIAGMGGGLVKHILESGRVICEQAHGLVLQPQSELPKVRRFLMENGYVTEREEMVMEDGKYYPMMRVHFDASAVSHADSFTEEQELEFRYGKQLLTEKHPVLLAYLRWEAQIQQDILTQLSGQPATEQIAARIDDVKQILAQNARALAYYE
>NC_015977.1|WP_014079154.1|1078793_1080476_+|nucleoside-kinase
MGKDMVSLTIEGEVRQYPAGTSFLAISQEYQEKYPDDIVLVVYNNRLRELNKTAQRDGTLSFVTTADKTGKKTYRRSVTLLMQKAVYNLWGSEHISVRVLYSIGQGYYCELREKADGQERVIAVDEERAIALKKEMYRLVTEDIEIEKRSMNTDDAIALFHDLGMEDKEKLFKYRRSSRVNIYVLDHYKDYFYGFMVPSTGYLRYYDIVTYEDGFVLLFPNENTREVAEFAPSGKLFHTLKASREWGRMLEIGTIGALNDAIAEGRMQEIILTQEALFEERIGHLADTIVKSGGKKFIMIAGPSSSGKTTFSHRLSIQLAAKGLKPHPFPLDDYYANRDQCPRDENGELDLECLEALDVELFNHDMNELLAGKRVNLPVFNFKTGKREYKDRYMQLGKEDVLVIEGIHGLNDRLSCSLPVESKFKIYISALTQLNIDEHNCLPTTDGRMIRRIVRDARTRGTSAKETIAMWDSVRRGEERYIFPFQEGADVMFNSALIYELAVLKMYAEPLLFAIDKDCPEYLEAKRLLKFLDYFLPMPSDGISQNSIIREFIGGSCFNV
>NC_015977.1|WP_014079155.1|1081062_1082145_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MNGIKLFNDLMEYADGKGASDVHLVPGRTAMLRIDGELTAAGQEDAAEWQDADLTEVTEQILSGDQLEEYRTKGALVCSYSFSKALRLRVSIYRQQGRDAMSVRLHPTGVPAPEKLLLPEEITELVKNGRGLLLVTGGRGSGVTTTVASLAAQIAATQSKVIVSVEDTTEYILPQGRGLVVQREIGADCASREEALAMALQQDADVILLDGIGNEREAGLLFAAVRRGQFVILAEKEDSVTAALLHLVQCGGSTSGSQILLESLAQGLAGAMAQKLLRRQDEAGRVAAYEVLVADAGVRSLIAENRIQQLDTSAGAEKERGRVQMDDAIYNLYMKSCITSGTAIAGAKDPEDMRRKVRLF
>NC_015977.1|WP_014079156.1|1082262_1082670_+|hypothetical-protein
MREKLQRFMTGRYGADELGRTLNIVVLVSLVVSMFSGLLPVLSIFYWFGIALMIYNCFRMFSKNVSKRYEENQRYLSRRYKAVVKRDQWKKRFAQRDTYRFFKCPGCRQRVRVPKGRGKICITCPKCRREFIRRS
>NC_015977.1|WP_014079157.1|1082696_1083560_+|hypothetical-protein
MFGYININQKIMTEENRKAYQAYYCGLCQRLKSNCGAKGQMLLNYDMTFLIVLLTGLYELTNESSEITCALHPTRKRQVWINEATDYAADMNLIVAYHNLIDDWKDEKAYTKKAFAKMLDKDYARVIEKYPRQVHAVEEFMRKTDEVEARGETNLDVVAGLTGEMLGEIFCWREDEWQEELRTLGFYMGKFIYIMDAYEDYDEDRRKKEYNPLVYAMRESADDMDTLCRLLLTSMMSECAKSFERLPILLHADILRNVLYSGVWSKYEYLQLKKRKAEEKNKKKARK
>NC_015977.1|WP_014079158.1|1083575_1084214_+|J-domain-containing-protein
MTDPYQVLGVSRGASDEEIKKAYRALSRKYHPDANVNNPNRDEAEEHFKEVQQAYDQIMKEKQQGGGYGYGGGYSSNSGGYSYAGSHGFGQNESPKMQAAANYIASRHYVEALNVLNGIPFGERRARWYYFSAIANQGMGNNINAMEHAKRAVEMEPSNMEYRQFLQHLQYGGTWYTSMGSDYDRPYASAGNWCLSLLCLDLLCNCCCFRPF
>NC_015977.1|WP_014079159.1|1084500_1085553_+|heat-inducible-transcription-repressor-HrcA
MDEMELDERKVKILDAIIRNYLETGEPVGSRTISKYTDLNLSSATIRNEMADLEELGYILQPHTSAGRIPSDKGYRFYVDHLMEEKNREVDDMKKFVIEHTEKVDQVLQQVAKMLAANTNYATMVSAPSYHRNKVKFIQLSNVNEEQILAVIVTEGNLVKNKIIPVSEPIDNETMLKLNILLNSNLNGLALQDINLGTIAKLKEQAGIHSDIISDVLDTVAETMGQDEDIRIYTSGTTNLFKYPELSDSTEKASELISTFEEKQQLASLVTENLLEDKSTGIQVYIGNESPIQTMKDCSVVTATYELGEGIRGTIGIVGPKRMDYEKVMDNLKVLKNSLDGILDRPKGET
>NC_015977.1|WP_044024855.1|1085587_1086226_+|nucleotide-exchange-factor-GrpE
MMEEVLEDLEKDAAEKQAEEVSEAEETEAETETAESGEQAEETEESEAEDGQEAPADEKKGFFKKKKDKKDEQIEELNDKLKRQMAEFDNFRKRTEKEKTQMYDMGAKSIIEKILPVIDNFERGLAAVPEEQREDAFVVGMDKVYRQMLTELDASGVKPIEAVGQEFDPNFHNAVMQVESEEYDSGVVAQELQKGYMYKDSVVRHSMVAVVS

Crispr_ID: NC_015977_8

• CRISPR_ID: NC_015977_8
• CRISPR_location: 1465451-1465544
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_8

Consensus_repeat	Method
AGCATTTGAAAATGTGACAGGAA	CRISPRCasFinder

spacers of NC_015977_8

>8.1|1465474|48|NC_015977|CRISPRCasFinder
AATGTGCGGGAAAGCATCAGAAAATATCAGTAATGAGGAAGCGCAATG

CRISPR arrays and Neighbor proteins around NC_015977_8

CRISPR arrays

The CRISPR arrays of NC_015977_8

>merge|NC_015977|8|1465451-1465544|CRISPRCasFinder
AGCATTTGAAAATGTGACAGGAAAATGTGCGGGAAAGCATCAGAAAATATCAGTAATGAGGAAGCGCAATGAGCATTTGAAAATGTGACAGGGA

>NC_015977|8|8|1465451-1465544|CRISPRCasFinder
AGCATTTGAAAATGTGACAGGAA	AATGTGCGGGAAAGCATCAGAAAATATCAGTAATGAGGAAGCGCAATG
AGCATTTGAAAATGTGACAGGGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014079481.1|1458378_1459221_+|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_015977.1|WP_006856185.1|1476260_1476437_+|30S-ribosomal-protein-S21	unknown	unknown	gnl|CDD|234707
NC_015977.1|WP_044024889.1|1461170_1462679_+|4-alpha-glucanotransferase	unknown	unknown	gnl|CDD|237738
NC_015977.1|WP_014079482.1|1459220_1460093_+|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NC_015977.1|WP_014079493.1|1470931_1471687_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|225130
NC_015977.1|WP_044024890.1|1462867_1463806_+|YegS/Rv2252/BmrU-family-lipid-kinase	unknown	unknown	gnl|CDD|224513
NC_015977.1|WP_044024892.1|1471991_1474652_+|alanine--tRNA-ligase	unknown	unknown	gnl|CDD|234701
NC_015977.1|WP_014079497.1|1476570_1477209_-|lactate-utilization-protein	unknown	unknown	gnl|CDD|376839
NC_015977.1|WP_014079491.1|1468664_1469492_+|purine-nucleoside-phosphorylase	unknown	unknown	gnl|CDD|350160
NC_015977.1|WP_014079486.1|1463939_1465424_+|stage-IV-sporulation-protein-A	unknown	unknown	gnl|CDD|378203
NC_015977.1|WP_044024891.1|1467948_1468593_+|membrane-protein	unknown	unknown	gnl|CDD|225239
NC_015977.1|WP_014079492.1|1469576_1470875_+|amidohydrolase	unknown	unknown	gnl|CDD|238623
NC_015977.1|WP_044024628.1|1474827_1476120_+|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|214599
NC_015977.1|WP_014079483.1|1460143_1461160_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NC_015977.1|WP_014079479.1|1455205_1456012_+|DUF3169-family-protein	unknown	unknown	gnl|CDD|371493
NC_015977.1|WP_014079480.1|1456826_1458260_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|379175
NC_015977.1|WP_014079478.1|1454966_1455185_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|224393
NC_015977.1|WP_014079494.1|1471801_1471954_+|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079489.1|1467113_1467704_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014079477.1|1453454_1454714_-|chloride-channel-protein	unknown	unknown	gnl|CDD|239654

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014079481.1|1458378_1459221_+|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	7.25754e-63
NC_015977.1|WP_044024889.1|1461170_1462679_+|4-alpha-glucanotransferase	gnl|CDD|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NC_015977.1|WP_014079482.1|1459220_1460093_+|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.43978e-69
NC_015977.1|WP_014079493.1|1470931_1471687_+|MBL-fold-metallo-hydrolase	gnl|CDD|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	8.3146e-09
NC_015977.1|WP_044024890.1|1462867_1463806_+|YegS/Rv2252/BmrU-family-lipid-kinase	gnl|CDD|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.37312e-49
NC_015977.1|WP_014079497.1|1476570_1477209_-|lactate-utilization-protein	gnl|CDD|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	4.05252e-44
NC_015977.1|WP_044024892.1|1471991_1474652_+|alanine--tRNA-ligase	gnl|CDD|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NC_015977.1|WP_014079486.1|1463939_1465424_+|stage-IV-sporulation-protein-A	gnl|CDD|378203	pfam09547, Spore_IV_A, Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.	0
NC_015977.1|WP_044024891.1|1467948_1468593_+|membrane-protein	gnl|CDD|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	5.78465e-18
NC_015977.1|WP_014079492.1|1469576_1470875_+|amidohydrolase	gnl|CDD|238623	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.	6.96902e-126
NC_015977.1|WP_044024628.1|1474827_1476120_+|methyl-accepting-chemotaxis-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.54599e-46
NC_015977.1|WP_014079491.1|1468664_1469492_+|purine-nucleoside-phosphorylase	gnl|CDD|350160	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA). Human PNP catalyzes the reversible phosphorolysis of the purine nucleosides and deoxynucleosides inosine, guanosine, deoxyinosine, and deoxyguanosine. Patients with PNP deficiency typically present with severe immunodeficiency, neurological dysfunction, and autoimmunity. Escherichia coli PNPII, product of the xapA/pndA gene, catalyzes the phosphorolysis of xanthosine, inosine and guanosine with equal efficiency and has been referred to as xanthosine phosphorylase and inosine-guanosine phosphorylase. E. coli PNPII is also capable of converting nicotinamide to nicotinamide riboside, and may be involved in the NAD+ salvage pathway. It is one of two purine nucleoside phosphorylases found in E. coli, which also contains PNPI, which displays a different substrate specificity and belongs to a different subgroup of the nucleoside phosphorylase-I (NP-I) family than PNPII. NP-I family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	5.24908e-153
NC_015977.1|WP_014079479.1|1455205_1456012_+|DUF3169-family-protein	gnl|CDD|371493	pfam11368, DUF3169, Protein of unknown function (DUF3169). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	3.87714e-60
NC_015977.1|WP_014079480.1|1456826_1458260_+|ABC-transporter-substrate-binding-protein	gnl|CDD|379175	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	4.4297e-26
NC_015977.1|WP_014079478.1|1454966_1455185_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	3.33597e-24
NC_015977.1|WP_006856185.1|1476260_1476437_+|30S-ribosomal-protein-S21	gnl|CDD|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	4.95432e-14
NC_015977.1|WP_014079483.1|1460143_1461160_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	5.51123e-89
NC_015977.1|WP_014079477.1|1453454_1454714_-|chloride-channel-protein	gnl|CDD|239654	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.	1.89306e-122

Protein sequences

>NC_015977.1|WP_014079486.1|1463939_1465424_+|stage-IV-sporulation-protein-A
MDISSKKEFDLYKDIQNRTDGEVYLGIVGPVRTGKSTFIKRFMDLMVLPYMEDVHSRQRTIDELPQSAQGKTIMTTEPKFIPKDAAEIALEDDTRIKIRLIDCVGFMVDGATGHMEGSTDRMVHTPWFDHEIPFVEAASIGTEKVIRDHATIGIVVTTDGSIGDLPRENYVNAEEQTVQELEEIGKPYVVVLNSTRPYSEETVRIAEGLREKYQTAVLPVNCEQLRKDDVFHILEQILYEFPVARMEFYIPKWTEMLPPDHPMKAEIIQSARTILGGMRKVKDIYAQDFTPEHYVSRMKLEEVDLASGCAKIRMEVAEKYYYENMSELAGVPIAGEYELIALVKEMSQRKEAYEKVADAMAAVQVKGYGVVGPGLSDIKMEDPVLIKHGNKFGVRIRATSPSIHMIRANIETEIAPIVGSEEQANDLIAYIREGEKSEEGAWETNIFGKSIGELMENGIRGKISMMDDECQMKLQDTMQKIVNDNNGGMVCIIL
>NC_015977.1|WP_044024890.1|1462867_1463806_+|YegS/Rv2252/BmrU-family-lipid-kinase
MLYFIVNEKSRSGRGAQIWKEVQRELVKRGIHYRHYVTEHEGHATRLAVEICAKTDDDICLAVVGGDGTANEVINGITHPEKVRFGLIPTGSGNDLARGLKLSGTPLENLARMLSCMQRGREACTVIDLGEVAWDDCEKPRKFAISAGVGLDALVCKKALTSKLKVFLNKLHLGKLTYLLITVQSLFSMQTTEAAVRLDETPERKLDRIIYIAAMNFKAEGGGVPMAPKADATDGKLSICSVHGIPKWRTFLCLPFLVAAKHTGIRGFDIDDCGTCEVRLKDPMVLHADGEYCGDVTKLQFRCLPGMLRVML
>NC_015977.1|WP_044024889.1|1461170_1462679_+|4-alpha-glucanotransferase
MRSSGVLMHISSLPSPYGIGTMGKEARKFADFLEKSGQKYWQILPICPTSYGDSPYQSFSSFAGNPYFIDLEYLCKEKLLKKAECESFPWGKKADKVDYGVMYESRYKLLKIAFERFLRAEPDDFEAFCEKEADWLSDYALFMALKDANGGNAWFSWEKDLKMRKPEALAEARSTYAKDIRFYQMLQYLFFKQWWELKAYVNEKGIEIIGDVPIYVAGDSADVWANPEEFYLDEDLNPIDVAGCPPDAFSEDGQLWGNPLFRWDVMKKNGYTWWTKRIAAMSKLYDIVRIDHFRGFDSYYAIPAKDKTAKNGEWRKGPGMDLFHTLEQKLGRLNIIVEDLGFLTPSVLKLVADSGFPGMKVIQFAFDSREGSNYLPHTYTEHCVVYTGTHDNDTLLGWMKTAPKESVKFAKEYLNLTKEEGYNWGMMRGAWSSVGELAVVPMQDLIGLGSEARMNTPSTLGGNWQWRATSDQITVKLAKRLYNYMEMYGRLWVGEDADRKEQ
>NC_015977.1|WP_014079483.1|1460143_1461160_+|LacI-family-DNA-binding-transcriptional-regulator
MVTIKDIARESGYSVSTVSRVLNNRNDVSPDARKKIEEVVAKFNFVPNNNAKHLKQNNSKAIGVLVKGISNMLFASVVEEIQRMIEKTEYTLVVSYLDEDADEVEQAILLCRERKPLGLLFLGGNPEYFHREFSGVDVPCVLVTNRANEMHFENLSSVATDDIAAARCAVDQLFVAGHRRIGILGGDFDKSYTSHQRFLGCEQSFSEHGAVLDVEHCYEKARFSFGSACRAMKRLIGKFPDVTAVFAMSDVMAIGAIRALRDLGYRVPEDVSVIGFDGTSLAEYYNPKLATIKQQHQTLANRSIEILFGQIELKKEPIHEIVPFEFVNGESIRVIDER
>NC_015977.1|WP_014079482.1|1459220_1460093_+|carbohydrate-ABC-transporter-permease
MAKNKKADNQVSAVRRAKHGWVLTVFFSILAVLWLYPIFLVAMNSLKKKGFITRYPFALPDHRSFFGIENFIKGVQKTNFFAAMGNSVIITVGSVAVIILCTSMCAWYITRVHNKVNSTIYMLCLFSMIVPFQMVMFSLSKLANMMHLSNPIGIILVYLGFGAGLAVFMFCGFVKSIPLEIEEAAMIDGCTPLQTFFQVVFPIMKPTTITVAILQAMWIWNDYLLPYLVLDLKKYKTIPIVIQYLKGGYGAVDWGTMMAMLVLAIVPIIIFYAACQKYIIEGVVAGAVKG
>NC_015977.1|WP_014079481.1|1458378_1459221_+|sugar-ABC-transporter-permease
MEKSIKKYFPVFALPTLVAFTIGFIIPFIMGIYLSFCEFTTVTDAKFVGLKNYIRIFSDATFTHALVFTALFTVVSVLTINVFAFAIAMLLTKGIRGTNLFRTVFFMPNLIGGIVLGYIWQILLNGILANFGKTLTYSGTYGFWGLVILMNWQQIGYMMIIYIAGIQNIPGELIEAAKIDGATNRQLLRHVTIPMVMPSITICTFLTLTNSFKLFDQNLALTAGEPSNSSQMLALNIYETFYTRTGWEGAGQAKAVVFFIIVAVIAMLQNRLTRSKEVQQ
>NC_015977.1|WP_014079480.1|1456826_1458260_+|ABC-transporter-substrate-binding-protein
MKRKVLSVMLASAMLATMFTGCGDSSTTDSNAAATTGNDAAATTTEAADTDAAKTDAAGGSVYYLNFKPEQDQAWQDLAATYTEQTGVPVTVITAADGTYEQTLKSEIAKTEAPTLFQVNGPVGLANWKDYCLDLSNSEIYSHLTSDDYALKNDAGEVSGIAYVIETYGIIYNKTILNDYCTMDNAVISSPEDINNFETLKAVADDIQARLDEINDQFGYDLKGAFTSAGMDGSSDWRFKTHLANLPIYYEYKDKGIDSTDAIEGTYLDNYKQIWDLYITDSTCEPGLLSSKTGDEAESEFGMEEAVFYQNGTWEYSNLTNEDNGYLVTAEDMSMMPIYIGVDGEENQGLCTGSENYWCVNNQASAEDQQATLDFLEWVITSDEGRDSMANVMGFTTPFDTFADGYTADNVFIQADAAYTKAGKYSVTWNFSTIPSETWKDGVGSALLEYAQGTGDWDGVVTAFVDGWKTEYDATHE
>NC_015977.1|WP_014079479.1|1455205_1456012_+|DUF3169-family-protein
MTDGTEKCNPKIEENQREDRRAFRKFIVLLLVSMVVGGITGAFSTMAAKGQADIGAGITAGLQKIAPYANLVIAAALAVWMTGMLRGGRAEYRRWDGEEEQLIEKIERKLGIGVIVTNVALIAGFFFFAAGMKSTGIDSGWEEEVPWVKIAATFLGLIAVMVVTVIAQNRIVNFTKEINPEKKGSVYDLKFQKTWIASCDEAEQLQIYRAAFRAYTAMNYAALGMFLVCFIGMLSWNFGLLPLTMVLFVWLTGVIVYGVESLRMTGGR
>NC_015977.1|WP_014079478.1|1454966_1455185_+|helix-turn-helix-transcriptional-regulator
MPLYNHLKEYRAKINVNQHEMGQLVGVSRQTISQIERGDYSPSVTLALKIAKVFEVPVEAIFTYEEESEEEK
>NC_015977.1|WP_014079477.1|1453454_1454714_-|chloride-channel-protein
MKEIIKHKITHNVNRLKTSLKWVVFAILSGVLVGSVGTLFYLCMALVTLVRTKNPWLIFLLPVGGILIVGAYRLLHDERDTGTNLVLSAIHSGDELPLRMAPLIFISTLITHLFGGSAGREGAALQLGGSIGNGLGRLFHFDEKDKHIMIMCGMSAAFSALFGTPMAAAIFSMEVVSVGIMYYAALVPCVISSLIAHAIATSFGVSPDGFPLGKIPDFTIGSAVEISILAILCALVSILFCVMLHGSDHLYKKFFKNPYLRVFVGGCIVVVLTLLVGDQTYNGTGINIIARCMDGTVRPEAFFLKMLFTAATLGAGYKGGEIVPSLFTGAAFGCLFGNVLGFSPTLCTAVGMSAVFCGVTNCPITSLLISFELFGYDGMPYFLLAIAFSYMLSGYFGLYQSQKIVYSKYKTNYINKKTH
>NC_015977.1|WP_014079489.1|1467113_1467704_-|hypothetical-protein
MQTLHLTGINKLLHPERDKRSATERIFDHLSHSNIGLNRGEATADTGSAASALDSFSVTQNISELLSPAYGMSEEEKKAYLAKIIAKLKSGKKLTSEEMRFLQAEDPQLYQQAARVQAMRGSLESGLAHSTSKEEAQSVYLDALTHISEEDPMKEYIIAAYDDAMKEFQKSDQYQSLPETKEDDAKQHTGSRHSHS
>NC_015977.1|WP_044024891.1|1467948_1468593_+|membrane-protein
MKNFIQGMYQKKHFARRLISVILAVIVMGFALSWLVLVNFGTDPCTSMNLAISGRLGMSLGNWQALLNCLLFIIVILWGREYIGFGTLANMFLVGYSIDFFSWVWSKVLPDGLFDSMAVRIGVLFPALAVFVVAAGVYMVTELGTAPYDAIPFLIVKAQKKVPFRVVRMVFDFTVIVIAWVFGAKIGLVTILMGFTLGPVISWVGEKMAPFFNE
>NC_015977.1|WP_014079491.1|1468664_1469492_+|purine-nucleoside-phosphorylase
MNLVYEKLQKCYESYKAKIDFTPKVALVLGSGLGDYADDIRVADTLDYHDIEGFPVSTVPGHKGRFIFGYVGEVPVVCMQGRVHYYEGYDMSDVVLPARLMKLMGAEVLFLTNAAGGIQLGMNAGDFMLIKDQIASFVPSPLRGANVDELGVRFPDMSQVYDKELQLLVKKAALGLDIDLKEGTYLQLSGPQFETPKEVAMCRTLGADAVGMSTACEAIAARHMGMRVVGISCISNLACGISAVPLCHEEVQETADRVAPKFKALVTETIKSIGK
>NC_015977.1|WP_014079492.1|1469576_1470875_+|amidohydrolase
MNTRFYNAKILTLADHHKFEITEGELWVKGNTICYIGDGTDTADVCKEGEVLVWDREIDACGNLLMPGFKNAHTHTAMTFLRSYADDLPLQDWLNQQVFPREGQLTEDDVYWLNILGIMEYLTSGITSNFDMYFFPPVDAKASADTGFRTVQTSGLNNFGGTVELMEENYHIVNEMSDLTSFIVGFHAEYTTSKELMEGVAALAQKLKSPVWLHNSETKLEVAECKERWGMTPTQLTDSLGMYEYGGGGYHCVWFEEPDFEIFKKRHLTAVTNPASNLKLASGICPTKRFVDEGIAMAIGTDGPASNNCLDMFREMFLTSALAKVREMDAECVGADEILYMATAGGAHAMQLEDCDRLAVGKKADIVMIDLNQPNMQPENNIVKNLVYSGSKQNVKMTMINGKVLYEDNHFEIGFDPKEIYQRANAIIGRMK
>NC_015977.1|WP_014079493.1|1470931_1471687_+|MBL-fold-metallo-hydrolase
MQVIFIHHSCFLVEVDEKVLIFDWFDGDRVEGYHFGGVLPEYEPDTPVYVFASHKHRDHFDMDVLHLAEKYPKIRFIFSKDCKMSPHFLTKHGFAPEVAKRIHYVGADEKCRVDDLNIETLRSTDAGVAFYVETNGAAFYHAGDLNDWHWDGAGDLINGSMRTNYRSQIRRLSGRKIHLAFVPADPRLMEHQFDGMNYFLEHTDADYVFPMHMWQDYSALPDYRKRISNAAMAERVVEIKHENQIFEILEE
>NC_015977.1|WP_014079494.1|1471801_1471954_+|hypothetical-protein
MAFLGWFVHYVLIFVVLVVVAGLGIFAGKKLSDRKDAKNAGETGNVEETK
>NC_015977.1|WP_044024892.1|1471991_1474652_+|alanine--tRNA-ligase
MKKFYGENELRRMYLEFFESKGHLKMNSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTCQKCIRTGDIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVLGLEEDRLYPSIYGEDDEAFDIWTKEVGVPAERITRFYRDPKTGECDNFWEHGAGPCGPCSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELSQKNIDTGMGLERLAVVMQDVDSVFDIDTMKAIRDKVCELSGKSYQKDALDDVSIRLITDHIRSATFMISDGIMPSNEGRGYVLRRIIRRAARHGRMLGIGGTFMAKLAATVIDESKDGYPELEEKKDFIFKVLTQEEEKFAKTIDQGLAILEKMEKEMQTAGEKTLSGENAFKLYDTYGFPLDLTQEILEEKGFSIDEDGFKKAMEIQKKKAHDAHKATNYMGADATVYDEIDPSITTEFTGYDSLTASSKITVLTTETELVEALSDGEVGTIIVEKTPFYATMGGQQGDKGEIRTASGIFQVEETIKLRGGKVGHIGKMTNGMIKAGDVADLSVDAKLRRDTCRNHSATHLLQKALREVLGTHVEQAGSYQDGERTRFDFSHFAAMTPEELKKVEAIVNEKIAEKIDVRTDVMTVEEAKKTGAMALFGEKYGETVRVVSMGDFSKEFCGGTHVANTGDIVVFKIISESGVAAGVRRIEALTGDNVFAYYKKEEEELEAAAKAAKATPATLVEKIGHLMAELKALQSENESLKSKAAKEALGDVMDQVVEVKGVKLLAVSVDGVDMNGLRDLGDQLKGKLGEGVIVLASASDGKVNLVAMATDDAMAHGAHAGNLIKSIAGKVGGGGGGRPNMAQAGGKNPAGIPDAIAEAKTALEAQLA
>NC_015977.1|WP_044024628.1|1474827_1476120_+|methyl-accepting-chemotaxis-protein
MDERDRGQGSLSDKVKGSYRRVSVVMYVTLVIAAIAVFAAAYVPKQFSLAYTILVLIVFLITAVNDTRLIQRNSQKIVDAVVDPVTELTKVAEEISKGNLDVEVQYSSDDELGKLADSFRVTVTTLNKIIEDLGYILEEFAQGNYAVRSNCKESYVGEFENVMTHLISMVTDVSGTFKQIRESSDQVAAGAEQLAISSQDLAKGATEQASAVDDLVESVATVSEQVEANSKSTDVVHDKAKEVGMEANVSQQKMQELTEAMERISGTSQELVSVIGQIESIASQTNLLSLNASIEAARAGEAGRGFAVVAEQIRMLAENSAQAAETSRHLLEANQSEVDRGNTVTQQTAESLNKVLTELDDIIQEVANIRVSSDQQAESVKRIANGVKDIGDVIQSNSAASEETSATSEELSAEADSLDGLITKFKLREE
>NC_015977.1|WP_006856185.1|1476260_1476437_+|30S-ribosomal-protein-S21
MSSVIVKENETLDSALRRFKRNCAKAGIQQEIRKREHYEKPSVKRKKKSEAARKRKYN
>NC_015977.1|WP_014079497.1|1476570_1477209_-|lactate-utilization-protein
MNPRQMHYETLAGTIIKNLARRRMEGYYCATVEDAEKMAFSFLTPGCTVSFGGSMTLEDTGMLTALRHDPGITLLDRAQAKTPEETKKIYHDALSSDFYFMSTNAITKDGELVNIDGTGNRVAALIYGPEHVIVMAGMNKVAANVDEALSRVHGTATPMNCKRLGKNTPCSATGVCSDCLSPDCICNQVVITRRSGIEGRIKVILIGEELGY

Crispr_ID: NC_015977_9

• CRISPR_ID: NC_015977_9
• CRISPR_location: 1849044-1849141
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_9

Consensus_repeat	Method
CGACGATCCCCGTTCATCGGACGGCGGTC	CRISPRCasFinder

spacers of NC_015977_9

>9.1|1849073|40|NC_015977|CRISPRCasFinder
TCCGTTTGCTCCCGGTCTTCTGTCGCGGTCTCCCTGCGGA

CRISPR arrays and Neighbor proteins around NC_015977_9

CRISPR arrays

The CRISPR arrays of NC_015977_9

>merge|NC_015977|9|1849044-1849141|CRISPRCasFinder
CGACGATCCCCGTTCATCGGACGGCGGTCTCCGTTTGCTCCCGGTCTTCTGTCGCGGTCTCCCTGCGGACGACGGTCCCCGTTCATCGGACGGCGGTC

>NC_015977|9|9|1849044-1849141|CRISPRCasFinder
CGACGATCCCCGTTCATCGGACGGCGGTC	TCCGTTTGCTCCCGGTCTTCTGTCGCGGTCTCCCTGCGGA
CGACGGTCCCCGTTCATCGGACGGCGGTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014079853.1|1850173_1850464_-|YlxR-family-protein	unknown	unknown	gnl|CDD|377288
NC_015977.1|WP_014079844.1|1839467_1841561_-|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl|CDD|236995
NC_015977.1|WP_014079858.1|1855148_1855979_+|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380391
NC_015977.1|WP_014079841.1|1835616_1836777_+|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl|CDD|224600
NC_015977.1|WP_044024932.1|1855979_1856699_-|PHP-domain-containing-protein	unknown	unknown	gnl|CDD|213987
NC_015977.1|WP_014079849.1|1845512_1846463_-|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl|CDD|223691
NC_015977.1|WP_014079855.1|1851769_1852237_-|ribosome-maturation-factor-RimP	unknown	unknown	gnl|CDD|234627
NC_015977.1|WP_014079850.1|1846459_1846855_-|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl|CDD|376719
NC_015977.1|WP_014079856.1|1852432_1852903_-|YbaK/EbsC-family-protein	unknown	unknown	gnl|CDD|239825
NC_015977.1|WP_014079847.1|1843646_1844573_-|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl|CDD|235536
NC_015977.1|WP_014079852.1|1849866_1850187_-|ribosomal-L7Ae/L30e/S12e/Gadd45-family-protein	unknown	unknown	gnl|CDD|236077
NC_015977.1|WP_014079848.1|1844576_1845500_-|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl|CDD|178886
NC_015977.1|WP_014079861.1|1857164_1858625_-|DNA-methylase	unknown	unknown	gnl|CDD|176454
NC_015977.1|WP_014079842.1|1836787_1838323_-|cardiolipin-synthase	unknown	unknown	gnl|CDD|197257
NC_015977.1|WP_014079843.1|1838474_1839383_-|S8-family-peptidase	unknown	unknown	gnl|CDD|173812
NC_015977.1|WP_014079857.1|1853937_1854954_-|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl|CDD|177883
NC_015977.1|WP_014079860.1|1856715_1857165_-|hypothetical-protein	unknown	unknown	gnl|CDD|370161
NC_015977.1|WP_044024930.1|1842256_1843519_-|C40-family-peptidase	unknown	unknown	gnl|CDD|366353
NC_015977.1|WP_014079845.1|1841812_1842079_-|30S-ribosomal-protein-S15	unknown	unknown	gnl|CDD|180170
NC_015977.1|WP_014079854.1|1850482_1851724_-|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl|CDD|237061

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014079853.1|1850173_1850464_-|YlxR-family-protein	gnl|CDD|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	9.01145e-33
NC_015977.1|WP_014079844.1|1839467_1841561_-|polyribonucleotide-nucleotidyltransferase	gnl|CDD|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_015977.1|WP_014079858.1|1855148_1855979_+|AraC-family-transcriptional-regulator	gnl|CDD|380391	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain. This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included is MmsR, a bacterial transcriptional regulator thought to positively regulate the expression of the mmsAB operon. The mmsAB operon contains two structural genes involved in valine metabolism: mmsA which encodes methylmalonate-semialdehyde dehydrogenase, and mmsB which encodes 3-hydroxyisobutyrate dehydrogenase. The cupin domain of members of this subfamily does not contain a metal binding site.	9.54167e-37
NC_015977.1|WP_014079841.1|1835616_1836777_+|D-alanyl-D-alanine-carboxypeptidase	gnl|CDD|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.93166e-103
NC_015977.1|WP_044024932.1|1855979_1856699_-|PHP-domain-containing-protein	gnl|CDD|213987	cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to produce histidinol. HisPPase can be classified into two types: the bifunctional HisPPase found in proteobacteria that belongs to the DDDD superfamily and the monofunctional Bacillus subtilis type that is a member of the PHP family. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	1.72471e-09
NC_015977.1|WP_014079849.1|1845512_1846463_-|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl|CDD|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.30281e-56
NC_015977.1|WP_014079855.1|1851769_1852237_-|ribosome-maturation-factor-RimP	gnl|CDD|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	5.34741e-59
NC_015977.1|WP_014079850.1|1846459_1846855_-|30S-ribosome-binding-factor-RbfA	gnl|CDD|376719	pfam02033, RBFA, Ribosome-binding factor A.	1.29987e-42
NC_015977.1|WP_014079856.1|1852432_1852903_-|YbaK/EbsC-family-protein	gnl|CDD|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	1.79468e-69
NC_015977.1|WP_014079847.1|1843646_1844573_-|bifunctional-riboflavin-kinase/FAD-synthetase	gnl|CDD|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	6.61915e-123
NC_015977.1|WP_014079852.1|1849866_1850187_-|ribosomal-L7Ae/L30e/S12e/Gadd45-family-protein	gnl|CDD|236077	PRK07714, PRK07714, YlxQ family RNA-binding protein.	3.83056e-24
NC_015977.1|WP_014079848.1|1844576_1845500_-|tRNA-pseudouridine(55)-synthase-TruB	gnl|CDD|178886	PRK00130, truB, tRNA pseudouridine synthase B; Provisional.	2.33361e-118
NC_015977.1|WP_014079861.1|1857164_1858625_-|DNA-methylase	gnl|CDD|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	5.21711e-92
NC_015977.1|WP_014079842.1|1836787_1838323_-|cardiolipin-synthase	gnl|CDD|197257	cd09160, PLDc_SMU_988_like_2, Putative catalytic domain, repeat 2, of Streptococcus mutans uncharacterized protein SMU_988 and similar proteins. Putative catalytic domain, repeat 2, of Streptococcus mutans uncharacterized protein SMU_988 and similar proteins. Although SMU_988 and similar proteins have not been functionally characterized, members in this subfamily show high sequence homology to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.	9.74321e-112
NC_015977.1|WP_014079843.1|1838474_1839383_-|S8-family-peptidase	gnl|CDD|173812	cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.08526e-98
NC_015977.1|WP_014079857.1|1853937_1854954_-|UDP-glucose-4-epimerase-GalE	gnl|CDD|177883	PLN02240, PLN02240, UDP-glucose 4-epimerase.	0
NC_015977.1|WP_014079860.1|1856715_1857165_-|hypothetical-protein	gnl|CDD|370161	pfam08863, YolD, YolD-like protein. Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.	0.000227944
NC_015977.1|WP_044024930.1|1842256_1843519_-|C40-family-peptidase	gnl|CDD|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.56274e-35
NC_015977.1|WP_014079845.1|1841812_1842079_-|30S-ribosomal-protein-S15	gnl|CDD|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.50781e-53
NC_015977.1|WP_014079854.1|1850482_1851724_-|transcription-termination/antitermination-protein-NusA	gnl|CDD|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	1.82749e-177

Protein sequences

>NC_015977.1|WP_014079850.1|1846459_1846855_-|30S-ribosome-binding-factor-RbfA
MRKNSIKNTRINGEVLRELSNIIRGEIKDPRINPMTSVVTVEVAPDLKTCKAYISVLGDEESQKATLAGLRSAEGYIRRQLAHSINLRNTPEITFVLDQSIEYGVRMSKMIDDVTKDIPDRTDEAEEETEE
>NC_015977.1|WP_014079849.1|1845512_1846463_-|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MTNFDDFLAEVHTVAIGGHIRPDGDCVGSCLATYNYIKTWYPDIDVTVYLEPIPNIFKFMARSNEIVSDFSGDTVYDLFIAQDCGDTGRLGGAAHFFEQAKHTVCVDHHISNQSFAQDNYIFPQASSASELVYELLPKERITKEIAECIYTGMVHDTGVFQYSCTSRKTMEIAGALMECGINYPKIVDDTFYTKTYNQNRIMGLALLKSRLHLNGKCISSVITEEEMTQYDVLPKHLDGIVNQLRVTKDVEVAVFLYETGDGTFKASTRSREVVDVSKVAVKYGGGGHIRAAGFSMTGDADAIIEQIISDLAEQIK
>NC_015977.1|WP_014079848.1|1844576_1845500_-|tRNA-pseudouridine(55)-synthase-TruB
MMNGIINIYKEKGFTSFDVVAKLRGILKTRKIGHTGTLDPDAEGVLPVCIGKATKICELLTDKTKEYEAVMLLGRTTDTQDVTGETLTQQEVRCSAKEVEKAVLSFVGDYMQVPPMYSALKVDGRKLCDLARAGVTVERAARPVHIFSIEILSIELPRVRMRVCCSKGTYIRTLCQDVGEVLGCGACMESLLRTRVGEFALADAIKLSEVEAYVIAHRSDATETEELQLPFLQAVDTVFLKYESATVDGQFRKYLYNGNRLRPEMFLEEHESMRMAPVRVYDDEGAFFGIYEYQAEKEDYKPLKVFK
>NC_015977.1|WP_014079847.1|1843646_1844573_-|bifunctional-riboflavin-kinase/FAD-synthetase
MKYIRNTTDFYIEENTVLSLGKFDGIHRGHEQLLQYFAKKKDEGLAGAIFTFDIPPRRNVQNVEAKVLTTNEEKRHMFEHLGIDYVVECPFTQEIMCMEPEDFIAKIVRQLHVKCMVVGEDFHFGHNRRGDYHMLRQYAGKYGYEVIVVEKIKEDSRDISSTFVREEIAAGNIEKANHLLGYRYFVTSRVLHGNQIGRTIGIPTINQLPPKEKLLPPNGVYVTEAYIGDRWYRGISNVGCKPTIEGEYPVGVETHLLDFAEDVYDKMVTVEFLSRVRSERKFASIEALKEQMQNDVAYGRAYFEKHTS
>NC_015977.1|WP_044024930.1|1842256_1843519_-|C40-family-peptidase
MKARLARIAGLVLAGTLVVSTAAIDQKSKNTDADTSATVASGVTSALSGSLSDAAMGVAGVSGMDIARTAQGQEAVEEGTESAEAGVDVDASTSSAAAGVSAELADAAAAASQAQDELTETESTEEQTESTEQDAAQQAASAYGYTNLGVANVEGNLNVRAAAGTDADVVGKMPNNAGCEILGVEGEWTQIKSGSVEGYVKSEYLLTGDAALARADEVKQTLATVTTTTLYVREQPNTDCAIVTMMPQGEELEVLEVLDGWVKINVDSDEGYVSSDYVEISTELLKAMTMTEIRYGQGVSDVRVSLVQYATQFVGNPYVWGGTSLTRGADCSGFVMSVFANYGISLPHSSGAQSNCGTKISASEAQPGDLFFYGNGSRINHVAIYIGNGQVVHASSPKSGIKISGAYYRTPVKVVRVINN
>NC_015977.1|WP_014079845.1|1841812_1842079_-|30S-ribosomal-protein-S15
MIAKDKKQNIIAEYGRTPNDTGSPEVQVALLTARIEELTAHLKENPNDHHSRRGLLKMVGQRRGLLAYLKKVDIERYRALIERLGLRK
>NC_015977.1|WP_014079844.1|1839467_1841561_-|polyribonucleotide-nucleotidyltransferase
MYKSFSMELAGRTLTVDIGRVCAQANGAALLKYGETTVLSTVTASDKPRDGIDFFPLSVEYEEKMYSVGKIPGGFNKREGKASENAILTSRVIDRPMRPLFPKDYRNDVTINNMVMSVDPACRPEIVAMIGSALVTTISDIPFAGPCATTQMGMVDGEFIVNPSQKEWDKGDLQLTVASTAEKVIMIEAGANEIPEDKMIEAIYKCHDVNQTIIAFVNKIVEEVGKPKHEYTSCAIPDEMFAAIKELVPPAQMEEAVFTDEKQQREENIREITDKLAEAFADNEEWLAVLGEAVYQYQKKTVRKMILKDHKRPDGRAINQIRPLAAEVDLIPRVHGSAMFTRGQTQICDVVTLAPLSEVQKIDGLDENITTKRYIHQYNFPAYSVGETKVSRGPGRREIGHGALAEKALMAVLPSEEEFPYAIRAVSETFESNGSTSMASTCASCMSLMAAGVPLKAMVAGISCGLVTGDTDDDYIVLTDIQGLEDFFGDMDFKVTGTHKGITAIQMDIKIHGLTRPIVEEAIARTREARIYIMDEVMSKAIAEPRKQVSEYAPKIVQIQIDPEKIGDVVGQRGKTINEIIARTGVKIDITDDGSVSVCGTEAEMMDKAIEMIRIITTDFKEGQILTGTVVSIKEFGAFLEFAPGKEGMVHISKIAKERINHVEDVLTLGDKVKVVCLGKDKMGRISFSIKDVPAEA
>NC_015977.1|WP_014079843.1|1838474_1839383_-|S8-family-peptidase
MNRVRKIIHTDYAYKTGLSGKNVTVAIMDTGIVPHVDFGNRIRYFGDFCEGKTGLYDDNGHGTHVSGIVAGSGEASRKEYGMPVCHGIAPQADIVMLKVLDAKGNGNTRDVLAGMEWIAKNQQEYQIRLLNISVGMLPSAGEREQQELLSAVDDLWDRGIMVVAAAGNNGPKENSVTIPGISRKIVTIGSSDDGKSEPGKRGLKTGYSSNGPTACCIVKPEILAPGTAIKSCGREKNGYRVKSGTSMAAPVVTGALALAFQKYPYLSPAEMKLRLYERAYPRGEQLGRKCWGMIHVDHLVRG
>NC_015977.1|WP_014079842.1|1836787_1838323_-|cardiolipin-synthase
MKKIAHLLMGRLTIVGVSILLQICWLFLVLWKFSYQFTYANLIIRAAAIVLVLVIANKWENPANKLSWTFLILLSPILGIMLYFLFGRSGLTKHTREQMDAVNREVDACMPVDEEAVRLLQEADPSVLRQSKYIADWGHFPVYRNTATKYYESGEAMFPDMLAALESAEHFIFLEYFIIEEGHMFHQIEDILEKKVKEGVEVRLIYDDVGCIGTLPPRYYKQLQKKGIKCAAFNPFRPLLSVIMNNRDHRKIFVVDGAVGFTGGINLADEYINEVKRFGYWKDTGVRIEGEAVWSLTSMFLSMWNYIVHSTEDYSRFMPAQHQKAPFENDGFVQPYGDSPLDHENVGENIYLNIINRAKNYVYIFTPYLIIDHEMLTALCNAAKDGVDVRIVTPGIPDKKMIFLLTQSYYAPLIQSGVKIYQYTPGFIHAKCFVCDDEIATVGSVNLDFRSLYLHFECGVFFYRSAVVAQVKEDCLNTFACSEQMTAEFCRNRPVPVRLLQSVLRLLAPLL
>NC_015977.1|WP_014079841.1|1835616_1836777_+|D-alanyl-D-alanine-carboxypeptidase
MKQFLSFLLCCTLTLSSPVLAAENSEADLSVSAPSVLLMEASTGTVVYEKNAHEIRHPASITKIMTLILIFDAIERGQISLTDTVTVSEYAASMGGSQVFLEPGETQTVETMIKCISVASANDACVAMAEYLCGSESEFVRQMNERARGLGMKDTTFVNCCGLDTEGHMTSAYDVALMSRELTVNHPEIHNYCTIWMENITHVTAKGSSEFGLTNTNKLIRQYEYATGLKTGSTSLAKYCVSATAEKDGLELIAVVMAAPDYKVRFADATTLLNYGFGKCRLYTDENTDALPDLPVTKGTETAVGLAYDSPFSYLSVKGEDLSDVKKEQILPETVTAPVRKGDVAGRVVYSAGGRELGSVNIRYTADVHAASYRDYFKMALFYLLT
>NC_015977.1|WP_014079852.1|1849866_1850187_-|ribosomal-L7Ae/L30e/S12e/Gadd45-family-protein
MKPDKVLSMLGIAAKAGGVASGEFSTEKAVKDGRAWLVIVASDASENTQKHFRDMTTFYEVPMYVYGEKETLGHFIGKEFRASLAVTNEGLAHSIEDKLKLTLTTE
>NC_015977.1|WP_014079853.1|1850173_1850464_-|YlxR-family-protein
MANKKIPMRQCVGCRELKPKKDMIRVIKTAAEDEASSQIVLDATGRKNGRGAYVCPNSECLRAAIKNKGLERSLKMPIPKEVYDTLTKEMEKFETR
>NC_015977.1|WP_014079854.1|1850482_1851724_-|transcription-termination/antitermination-protein-NusA
MSSNNELLEALNILEREKNISKETLLEAIENSLVTACKNHFGTSENVKVTMDPQTCEYHVFQEKTVVEQVEDPVEQISLVNAKMVDSKYEIGDIVNVEIQSKEFGRIATQNAKNVILQKIREEERKVLYNQYYSMEKDVVTGVVQRYIGRNVSVNLGKVDAILTENEQVRGEVFQPTERIKVYILEVKDTSKGPKILVSRTHPELVKRLFESEVTEVREGIVEIKAIAREAGSRTKIAVWSNDPDVDPVGACVGMNGARVNAIVNELRGEKIDIITWNENPAMMIENALSPAKVISVIADAEEKSAKVIVPDYQLSLAIGKEGQNARLAARLTGFKIDIKSETQARESGDFMDYESEYEDDEYYEDDEYAEDGEYTEDGEYAGDRYAEDADAEGEYAEESELADETDTENEEE
>NC_015977.1|WP_014079855.1|1851769_1852237_-|ribosome-maturation-factor-RimP
MSKRETYEARTEELITPILERMHFELVDVEYVKEGGTWYLRAYIDKEGGITVNDCEAVAREMNEILDREDFVEDSYVFEVSSPGLGRPLKKEKDYVRSMGKEIEIRTYRAINREKEFYGILSAYDESTVTIETENGEKMTFEKPDIALIRLAFDF
>NC_015977.1|WP_014079856.1|1852432_1852903_-|YbaK/EbsC-family-protein
MSLERAKAYLKEYKMEDQIREFPVSSATVELAAEALHTEAGRIAKTLSFLVDGEAVLIVCAGDARIDNAKYKAFFRAKAKMLAPDEVEERIGHAIGGVCPFGIKEGVRVYLDETLKKYETVFPACGSSNSAIELTIPQLEQLAKPVCWVDVCKLPA
>NC_015977.1|WP_014079857.1|1853937_1854954_-|UDP-glucose-4-epimerase-GalE
MTILVTGGAGYIGSHTCVELQNAGYDVVVLDNLSNASEKSLQRVEALTGKPVTFYKGDILDRDILNKIFAEHKIDCCIHFAGLKAVGESVAKPWEYYNNNIAGTLTLVDVMRQNGCKNIIFSSSATVYGDPAEIPITENCPKGQCTNPYGWTKSMLEQILTDIQKADPEWNVILLRYFNPIGAHKSGTMGENPNGIPNNLMPYVTQVAVGKLKELGVFGNDYDTPDGTGVRDYIHVVDLAIGHVKALKKIEEKAGLCIYNLGTGHGYSVLDIVKNFEAATGVKIPYVIKARRPGDIATCYCDPSKAKNELGWEAQYGIREMCEDSWRWQKNNPNGYED
>NC_015977.1|WP_014079858.1|1855148_1855979_+|AraC-family-transcriptional-regulator
MPHHYKNSYKVTEKELVSLSVYNVGFQKCDALYQWGPGIRDHYLIHYIISGKGTYRVAGQTYHLSGGDTFLVYPNTEVVYCADEQNPWEYAWVGFTGSDASMILKATDFSPENPFIRDTPRGNDIHRQILHIYDARGNEFEHAVEMTGRLYTMLALFMHGATHAGSQNSANSYVQKSIEYISSNYSYAITVEDIAGYVGVSRSHLFRSFEAVLGRSPKEYLTDFRMKQACYLLEHSSLSITAIANSLGFDNSLYFSKTFHRQKGMSPKEYREKNRS
>NC_015977.1|WP_044024932.1|1855979_1856699_-|PHP-domain-containing-protein
METQRYLYETHMHTSEASACAGSTGAQMARAYKEAGYTGIIVTDHFFYGNTSVDRSLPWEEWVRRFCLGYEHAKAEGERIGLSVFFGWEACYEGTEFLVYGLDQAWLLAHPQIKDASIEEQYALVHEGGGIISHAHPFREEDYIPEIRLFPEYVDAVEGVNAMHSSRASDCHKNPLFNERALAYGKEHNLPFTAGSDQHTTHMIGGGMVFPRKLKDVHDFTRAVLGREAVELLDGCKSE
>NC_015977.1|WP_014079860.1|1856715_1857165_-|hypothetical-protein
MGWDHAAEEHKYDDIRMLVHHRSRVHPPMSLWDRAAQFSPFAALSGHEDAIRETARLTTERAELSESRKEELNEQLVWLREHPDARERVTVTYFRPDAKKAGGAYVTVTGAVKKIDEYEKTLWMEDGTVIAIEELSAVEIPGKDRYEEE
>NC_015977.1|WP_014079861.1|1857164_1858625_-|DNA-methylase
MDEAHVYIAIDLKSFYASVECVERGLDPLTTNLVVADPERTEKTICLAVSPSLKAYGIPGRARLFEVVQKVKEVNAGHPKERLTYQIAPPRMALYMDYSTRIYNLYLRYVAPEDIHVYSIDEVFMDVTHYLGTYHMTARELAAKMIQDVFAETGITATAGIGTNLYLCKVALDIVAKHVKPDRNGVRIAKLDEMSYRRLLWNYRPLTDFWRVGRGYQKKLEENGLYTMGDIARCSLGGAREFHNEELLYRLFGINAELLIDHAWGWEPVTMEQIKAYRPQVNSISSGQVLHCPYDAKGARLVVQEMADALALDLVERRLVTDQLVLTVGYDIENITNPALYADYRGEIVADRYGRKIPKHAHGTVNLKTRTSSSRKIMEAVMGLYDDIVNPKLLVRRITLVGNRLVEEARAEAEEQYEQLELFTDTGGQEEEKKQEELRLKKERSLQEAMLSVKKKYGKNAMLKGMNLQEGATAMERNSQIGGHKA

Crispr_ID: NC_015977_10

• CRISPR_ID: NC_015977_10
• CRISPR_location: 2204732-2204831
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_10

Consensus_repeat	Method
GCGGGTTGCATGCATACTTTCCTCTGTCTGGCTT	CRISPRCasFinder

spacers of NC_015977_10

>10.1|2204766|32|NC_015977|CRISPRCasFinder
TGATCTACAGCCCGCGGGAAATCTTCTTTTAT

CRISPR arrays and Neighbor proteins around NC_015977_10

CRISPR arrays

The CRISPR arrays of NC_015977_10

>merge|NC_015977|10|2204732-2204831|CRISPRCasFinder
GCGGGTTGCATGCATACTTTCCTCTGTCTGGCTTTGATCTACAGCCCGCGGGAAATCTTCTTTTATGCGGGTTGCATGCATACTTTCCTCTGTCTGGCTT

>NC_015977|10|10|2204732-2204831|CRISPRCasFinder
GCGGGTTGCATGCATACTTTCCTCTGTCTGGCTT	TGATCTACAGCCCGCGGGAAATCTTCTTTTAT
GCGGGTTGCATGCATACTTTCCTCTGTCTGGCTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014080183.1|2218011_2218332_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014080166.1|2198496_2200884_-|N-6-DNA-methylase	unknown	unknown	gnl|CDD|280533
NC_015977.1|WP_014080169.1|2202808_2203216_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014080182.1|2215912_2217988_-|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl|CDD|319848
NC_015977.1|WP_014080168.1|2201745_2202606_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_081468043.1|2197459_2198203_-|restriction-endonuclease-subunit-S	unknown	unknown	gnl|CDD|366631
NC_015977.1|WP_014080162.1|2193036_2193630_-|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239646
NC_015977.1|WP_014080173.1|2205368_2205968_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NC_015977.1|WP_014080181.1|2214448_2215648_-|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|380618
NC_015977.1|WP_014080184.1|2218638_2219076_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl|CDD|273918
NC_015977.1|WP_044024666.1|2212690_2214406_-|HAMP-domain-containing-protein	unknown	unknown	gnl|CDD|214599
NC_015977.1|WP_014080179.1|2210450_2212055_+|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl|CDD|236471
NC_015977.1|WP_143761702.1|2192080_2193034_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl|CDD|379112
NC_015977.1|WP_014080163.1|2193811_2195143_-|aspartate--tRNA(Asn)-ligase	unknown	unknown	gnl|CDD|235354
NC_015977.1|WP_014080170.1|2203511_2204441_-|2-dehydropantoate-2-reductase	unknown	unknown	gnl|CDD|235821
NC_015977.1|WP_014080172.1|2205163_2205379_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014080177.1|2207982_2210091_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|223562
NC_015977.1|WP_014080164.1|2195693_2196191_-|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl|CDD|319971
NC_015977.1|WP_014080167.1|2200876_2201056_-|DUF1778-domain-containing-protein	unknown	unknown	unknown
NC_015977.1|WP_014080176.1|2206566_2207934_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240548

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014080166.1|2198496_2200884_-|N-6-DNA-methylase	gnl|CDD|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	2.52616e-14
NC_015977.1|WP_081468043.1|2197459_2198203_-|restriction-endonuclease-subunit-S	gnl|CDD|366631	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain. This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.	1.70246e-16
NC_015977.1|WP_014080163.1|2193811_2195143_-|aspartate--tRNA(Asn)-ligase	gnl|CDD|235354	PRK05159, aspC, aspartyl-tRNA synthetase; Provisional.	0
NC_015977.1|WP_014080162.1|2193036_2193630_-|NUDIX-hydrolase	gnl|CDD|239646	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.74418e-45
NC_015977.1|WP_014080173.1|2205368_2205968_-|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.55625e-12
NC_015977.1|WP_014080181.1|2214448_2215648_-|BMP-family-ABC-transporter-substrate-binding-protein	gnl|CDD|380618	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type 1 periplasmic sugar-binding protein-like fold.	8.99521e-131
NC_015977.1|WP_014080184.1|2218638_2219076_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl|CDD|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.61789e-54
NC_015977.1|WP_044024666.1|2212690_2214406_-|HAMP-domain-containing-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.86317e-42
NC_015977.1|WP_014080179.1|2210450_2212055_+|phosphoenolpyruvate-carboxykinase-(ATP)	gnl|CDD|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	0
NC_015977.1|WP_143761702.1|2192080_2193034_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.90573e-37
NC_015977.1|WP_014080177.1|2207982_2210091_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl|CDD|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NC_015977.1|WP_014080170.1|2203511_2204441_-|2-dehydropantoate-2-reductase	gnl|CDD|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	8.88826e-54
NC_015977.1|WP_014080164.1|2195693_2196191_-|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl|CDD|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	6.63902e-66
NC_015977.1|WP_014080182.1|2215912_2217988_-|heavy-metal-translocating-P-type-ATPase	gnl|CDD|319848	cd07550, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily. Uncharacterized subfamily of the heavy metal-transporting ATPases (Type IB ATPases) which transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_015977.1|WP_014080176.1|2206566_2207934_+|MATE-family-efflux-transporter	gnl|CDD|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	8.4066e-109

Protein sequences

>NC_015977.1|WP_014080170.1|2203511_2204441_-|2-dehydropantoate-2-reductase
MKYQSVAILGAGAVGSYVMWGLAKKKEIDLCVVASGERKARYERDGFVINGQVYHPAVRTPEEAAGVDLLIVATKYQALRPALGDIQTVAGGHTTVMSLMNGVDSEEIIGEVIDPSQIVYSLIKVASERKGNQVVFDPETTIGIVYGEADLSRGTGRIEALNDLFAGTGLHYRATDVIRTEIWSKFRLNVPNNQAQAMVGCGVGAYRDSEHVAFLRDRLREEVDRIAEKKGIDFDKADTSSTFGSKVRDRARYSTLQDLDAGRHTEVDMFAGAVVRMGRELGIPTPYNEFTYHMIKALEEKNDGKFDYE
>NC_015977.1|WP_014080169.1|2202808_2203216_-|hypothetical-protein
MIIFDKCGMTKFFIIRKEKVAYMDKMDKAMEGVLEYLKHKGKLTELENDILLATQICQSSPFDSEAAKKRIMEFNAKYREVCSSILVTPGIKTKPLFDMKDEEVWESLWIQVEALCGRELGEIERRRMSRKLKMI
>NC_015977.1|WP_014080168.1|2201745_2202606_-|hypothetical-protein
MENVEINITPMSLKNGVMGLPIQCCRNWDASGSVEGIFQYAGRKSSITFSPKHKNKERGTAAAWQFTVNDSIQFNQLRMDGIHTYVEEISIGEKLICSLCESGGLYFLTVENVINRPETKATQKLKALLKQGFREETGKMSKAPVWNSPSEWISFDKISNYSEVQDCLYIWTGKKTGYNTVYLYVGIVGDTKSEGRSKRNLMQRLKEEQKKFYTECGVNIEQFRYCSLNNAFDYSVPELLKTVEMSQITVMTSLFQCKNARDNIDALLAGYDVILLNKMTSYKYIK
>NC_015977.1|WP_014080167.1|2200876_2201056_-|DUF1778-domain-containing-protein
MNKTYSMSIRVSEEELEKLKQAARLETYASYSEFVRRTALLEASKIITENTEKENKNNG
>NC_015977.1|WP_014080166.1|2198496_2200884_-|N-6-DNA-methylase
MAKKDSSEETTKGLVADKLKEIDGYPMAQNTTVDGITWFKEDSYKGTSYDWLKDVFKKASKKQTMRSKGTPDYVVTLDGSDIIIVIECKGSVDDHSCLDDVEDYVKHGYGGADETEKYAINGALWYASFLKSDYDVISIGISGQTEQTARVSSFVWPKGEEISSIALIEDGYLDNSLVSITQYKSDVNSVLGRMGETEETVRKQLRRYTLNCANFLRQNGIEDNSKAGFVSAIILGLTNHESALYKNTKNAIDHKKSTKAKKMLSDPIGKSAVNQLKSSLYGDGKDIYDESYIRGIWDIDGIPQGKRISLKKFYDTLLAKDELTQAPKGKDKLFPDGDTVLSCCIYSLYENVIEVLDTYTGIDVMGEFYTTFLRFTKGNAKEKGIVLTPKHVTELFCDIAEFYSDRKFDENTKILDICCGTGAFLIASLNRIKQNIQSEVVSDEKKVSRYEDAQKNSLIGVERDASMYALAYANMRFHGDGKSNLFNCSSLLIDSYAPVDDSGKTYTDTGKIPLNEALSDFGDIDIGMINPPYSLDKKDNSSKQEYPIVKQINELKDKNKRLNKKIKEYRKKTDGKDYSEAIFNCQNEIKANNDLLNKYEKDFTNSGLREVAIQKGQDELDFIASMLHYLKKGGIGLAIVPMSCAGNSGTKLRAELLKYHTLLACMTMPPQLFYDSHVGTATCIMVFKAHIPHDKNKATFFGRWQNDGFKVIPHNGRKDTGAWSSIREEWINQLDGTAAIDDTIWLRKKINPNDEALAEAYIETDYNKLDDSVFERTIKKYALYKYMDEKGLLGD
>NC_015977.1|WP_081468043.1|2197459_2198203_-|restriction-endonuclease-subunit-S
MIQYCTIIRYNQYKYSYGRGANRTIGKLFIPDLDEIKTFPKYNQLPDISQIPDYFLNEGYNKACWYLDNIDKDEFEKKYAKPAINKRISLNDRKWDYFKLNKLFDIKKGKRLTKADQTMGDTPFIGATAINNGVTGYIGQEPMHEGNTISLTYNGSIGEAFYQEVPFWASDDVNVLYLKGRELNPHLALFFCQILRLEGELHSYARKWNLEHMNDTKIKLPIDKDGEPDYDFMEQYIKSLSFSGNIG
>NC_015977.1|WP_014080164.1|2195693_2196191_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MIKILFICHGNICRSPMAEFILKDKVEKRGLTSRFEIASAATSTEEIWNGKGNPIYPPAQAELRRRGIDGTAYTDFSGKRARQVTREDYEHYDYLLCADTANIRNTIRITGADTEGKIRLLLDYTDRPGCSIADPWYSGNFEDTYRDVDAGCEGFLAYLKEKGAI
>NC_015977.1|WP_014080163.1|2193811_2195143_-|aspartate--tRNA(Asn)-ligase
MEYVTGVSKKETVEISEILSGDFEGKQVKVNGAVHTIRDMGEVAFVILRKREGLLQCVFEEGKTKFDLKELKEASTIEVEGTVRAEHRAPNGFEVRLDTIRVLSEPAEQLPFAISKWKLQTTLETNLDHRAIALRNVRERAKFRIQEGVVRGFRDFLYSEGFTEIHTPKIGAKSAEGGANLFRLEYFHRPAVLQQSPQFYKQMMVGVFDRVFETAPVFRAEKHNTKRHLNEYTSLDFEMGYIDGFEDIMAMETGFLQYTMKFLERDYAKELKMLGVTLPNVEQIPAVRFDEAKQKVAEKYHRQIRNPYDLEPEEEALIGQYYKEECGADFVFVTHYPSKKRPFYAMDDPADPTYTLSFDLLYHGLEITTGGQRIHDYQMLLDKIEKRGMTTEGMEQYLAVFKYGMPPHGGLGIGLERLTMKLVGEDNVRETTLFPRDLSRLEP
>NC_015977.1|WP_014080162.1|2193036_2193630_-|NUDIX-hydrolase
MNIEQQIADYKPYNEQEAHDQAVMRQLLATQPDLFTRENQVAHMTASSWLLNATHDKVLMIYHNIYHSWAWTGGHADGDRDLLAVAKREAMEETGVTEIRAISEDIFSLEILTVDGHEKRGAYVPSHLHLNVSYLLEADEAEVLRIKPDENSGVRWFFLEEALAACSEPWMIERVYKKLNAKVRERFGGTYGMQRGE
>NC_015977.1|WP_143761702.1|2192080_2193034_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MKDLGTKRLETERLILRRFTLEDAEKMYENWAGDPEVTKFLTWPTHESAEISRQILKEWVAAYDNPEVYQWCIEEKESGEPVGSIAVVSRNEKAQSCEIGYCISRSRWHKGITTEALAEVMRYLFEEVGVLRLESRHDPKNPYSGEVMKKCGMHYEGTRIRADWNNTGICDCALYGMVTYVGVGNAAQTTDSVQLNGTAGWAADGAEAKGEKQGAQTERTPKNVISDETIEYVGILAKLELDDEEKERAKKDMGEMLDYIDKLNELDTEGVEPMSHVFPVNNVFREDVVTNGDGSADTLANAPVKKDGGFKVPKTIS
>NC_015977.1|WP_014080172.1|2205163_2205379_-|hypothetical-protein
MFFKEDTTFNDIRDKSLQQWLDEMEQHEDVAVRGGVKLTREYVQYLKDEIGRLRHENEVKNAYLKKLREKR
>NC_015977.1|WP_014080173.1|2205368_2205968_-|GNAT-family-N-acetyltransferase
MLYYREISLKDQRKCLLKNAERADAAAFLHYFTQAHAETDFLTTYADEGTHSVEDMEERLAAQKASRTEIEICAFVDGILVGSAGNHALSTREKLRHRADFGISILREYWGQGIGAALTGACIDCAKEAGFRQLELEVVGDNENAVRLYKKYGFVEYGRNPRGFLTRDGRWQELVLMRLELEDAGARENDAGNGESDVF
>NC_015977.1|WP_014080176.1|2206566_2207934_+|MATE-family-efflux-transporter
MKRIDFEHGTITGNILGAALPMLVAQLLSLLYNIVDRIYIARIPDVGTTALGAVGLCFPIIVIITAFSNLFGSGGAPLFSISRGGGDTKKAGQIMNTSFTMLCAGALVLMAAGLLFAAPILKLFGASDAALPYAYPYLMIYLLGTLPSMIATGMNPFINAQGYSVAGMLSVAIGAVTNFLLDPLFIFVFHLGITGAALATVLSQTLSALYVIRFLHRRAEYKVRLLRPAEWKSSLVEAKNIISLGTAGFIMQLTNSLVSIFCNNVLGATGGDVYISVMTIISSVRQMVETPIYAINEGTSPILSYNYGARRPDRVRKAILTLALLILLYTAVMWSSIILAPRALIGIFSSDAALVADAIPSLKLYFAAFIFMDLQYIGQTVFKSLNKKKHAIFFSLLRKVFIVVPLTYLLPYAFGMGTDGVFAAEPVSNVIGGSLCFITMLSTVLPELKRMEKEA
>NC_015977.1|WP_014080177.1|2207982_2210091_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MRYQIRHARVQFGGDVILRDVNFKVHDREKIAVVGRNGCGKTTLLKLIAGDIEMSNLDSDEECGITMAGGQEIGFLRQVNFVDAEVTVEDELKKVFVPVFACEERMKELEEQMKTAAETKETAPDGALLREYDRLQKQMEAMRGYSWRRDMETMFQRFGFALEDLRRPIGSFSGGQQTKVAFIKLLLTRPDIMLLDEPTNHLDLPTIEWLENYLKGYDKAVVIVSHDRMFLDKVADVTYEIEYHEMKRYPGNYTYFMQRKQEDLIKQEKDYEEQQKEIKRLTDWIEKWKNTPTKVAATRSKRMAIEHMVKIEKPRRFDTRAFHGRYTPRIESYTNVIQAKDLSIGYDAPLAEVSFLLQKKERLAIIGENGKGKSTLLKTLIGELPALGGSFKFGQNVEWGYFDQQKAVMEQAPPQQTVLENFWAAYPGYLREEVRSALGGFLFSGEDVEKKMGQLSGGEKVRLALCKMLQTRPNLLIMDEPTNHMDIIGKEALEQMLREYEGTVLFVSHDRYFISRITTGILEFSGDAVRQYAMNYEEYLAEKQKCAGGVAANAGSAAGRNAGGTAERNAGSKGTGGVAAEAGNAAGRNMGSAAGQGAHVRGAADTGSVPTLSDVFDKKTYYNPGKVRSRLQRQKEKYERMLAESEEKLAELQMQMLDPALASDYPKLMELQSAVDAEEANQDSLLERMLETETELAEYEET
>NC_015977.1|WP_014080179.1|2210450_2212055_+|phosphoenolpyruvate-carboxykinase-(ATP)
MATIDLSKYGITGTTEVVYNPSYEMLFEEETKPELKGYEKGQVSELGAVNVMTGIYTGRSPKDKFIVVDENSKDTVWWTSDEYKNDNHPATQEAWNAVKDIAIKELSNKRLFVVDAFCGANKDTRMAIRFIVEVAWQAHFVTNMFIKPTAEELENFEPDFVVYNASKAKVENYKELGLNSETAVMFNITSKEQVIVNTWYGGEMKKGMFSMMNYFLPLKGMASMHCSANTDLNGENTAIFFGLSGTGKTTLSTDPKRLLIGDDEHGWDDNGVFNFEGGCYAKVINLDKDSEPDIYNAIKRNALLENVTLDANGKIDFADKSVTENTRVSYPIDHIQNIVRPISSAPAAKNVIFLSADAFGVLPPVSILTPEQTQYYFLSGFTAKLAGTERGITEPTPTFSACFGQAFLELHPTKYAEELVKKMEKSGAKAYLVNTGWNGTGKRISIKDTRGIIDAILNGAIKTAPTKTIPYFNFEVPTELPGVDSGILDPRDTYANASDWETKAKDLAARFVKNFAKYEGNDAGKALVSAGPQA
>NC_015977.1|WP_044024666.1|2212690_2214406_-|HAMP-domain-containing-protein
MEISMNIKKKILGITIAPVIILGLISMFLTTTMVRSAMLEEIEEALRGTAAATLAAYDQNTGDYLQTSNGDIWKGSYNISKSESLVDRIKGNTGMDVTFFYGDTRIMTSAVDAGGNRILNSKAGDRIVEKVLQGGESYFSHAVSIEGTLNYGYFIPVYQNGSTDEIIGMIFVGTDKQEKDAVINKILGTISMAVCAVMILCIAIGMKLATSMSRNIRSSIEVVGKVADGDLNVWVEDKLLGRHDEIGDLSRVTITLRDAMKATIQEISQNAKRLLDASELLGTAADQTNGTMDHVRMAVNQIVENSTEQAQNSQNTSEHMRIMGENITETSAEVELLDDNAASMQQSSEKAAETLNNLRNINIEVERIIGEVQEQTNRTNDSVQKIHEATAFITSIAEETNLLSLNASIEAARAGESGRGFGVVADQIKKLSEQSNESSKEIEETAKTLSEDSAKAVEIMQQMQEIIMNQSASMQDTQKVVEEVIAQIGSSMQSIRQIKESTGHLESSRNEVLQAVSELSEIAQGNVDSTKKTYDETEEVVDTFKQVYVSAEQLREIADELVSSIDYFKMQ
>NC_015977.1|WP_014080181.1|2214448_2215648_-|BMP-family-ABC-transporter-substrate-binding-protein
MRKKWIRLIAAAMGSFLLAGCGADTQIDDYATNAGAESVQQTSGTESAAAAASATEGIPKDEIKVGVLHLSDPAEGSGYTYTHDLGIQGMQQNLGLSDDQIVRKINVPDSDEDATKQAIQECIDEGCNIIFATSWGYMEATAEMAEKYPDVYFSHGTGYMSNGRNFNNYFGRIYQARYLSGIVAGMNTTTNKIGYVAAMDNSNSEVTGGIDAFALGIYSVNPDAKVYVKVTNSWYDPEAEENAAKTLLDMDCDVIAQHCDTEYPQTLAQERGVYSIGYNSDMSKNAPEACLCSVIWNWSAYYTAAVQSLIDGTWDGSNYYGGMNENLVALTNLADFCAEGTQEKVDEAKEQILSGQNGVFDGVIETNTGETVGEAGKTLDDATITGGINWYFKTVNVVD
>NC_015977.1|WP_014080182.1|2215912_2217988_-|heavy-metal-translocating-P-type-ATPase
MKFAIKHEIKGRMRIHVAQYRMSCAQADTLLYFLQNDIQVSSAKVYERTGDAVICYDGSRAELIDKLRHFHYEDVEVPNGLIENSGRELNASYQEKLIGRVVRRYASKIFLPYPIRACWTTVKSFRYIWKGIKTLAARKIEVPVLDATAIGVSILRGDTETAGSIMFLLGIGELLEEWTHKKSVGDLARTMSLNVGKVWLKKDGVEVLVGAKEVREGDEVVVHMGNVIPFDGVVTDGEAMVNQASLTGESEPVRRISENYVYAGTVVEEGELTILVKAVGGSSRYDKVVQMIEESQKLKSGLESRAEHLADRLVPYSLGGTALTYLLTRNVTKALSILMVDFSCALKLAMPISVLSAIREASFYNVTVKGGKYLEAMAEADTIVFDKTGTLTKAKPTVAKVVSFNGDSPDELLRIAACMEEHFPHSMAKAVVEAAREKGLDHEEMHSKVEYVVAHGISTTINGRKAVIGSYHFVFEDEGAALPEGTKELFESLPEEYSHLYLAIEGQLAAVICIEDPLREEAEAVINSLRRSGIKKIVMMTGDSERTASAIAKRVGVDEYYSEVLPEDKAGFVEREKAAGRKVIMVGDGINDSPALSAADVGIAISDGAEIAREIADIMVSSDDLYQIVTLKLLSDGLMKRIRKNYRVIVGFNTGLILLGVGGVLQPTTSALLHNTSTLVISLKSMQNLLS
>NC_015977.1|WP_014080183.1|2218011_2218332_-|hypothetical-protein
MLKCFEKIDWKKTGIFAGGVLFGTAGIKVLSSKDAKKVYTSCTAAFLRAKECVMNTVSTVQENAGDIYAGAKEINEERAAKAEAEAFADAEAEAAEKTGTAENTEE
>NC_015977.1|WP_014080184.1|2218638_2219076_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MNNRTFYNEVLTDHNRYPGHKEKLADANLVLEGVNPSCGDDIVLQLRVEDGRIAEGTFTGDGCAISQASVDIMLDLVIGKTKEEAMHLADLFFRMIKGTVSDEELEELEEASALVDISHMPARVKCAVLGWHTLTEMLGDEPEEK

Crispr_ID: NC_015977_11

• CRISPR_ID: NC_015977_11
• CRISPR_location: 2304874-2304992
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_11

Consensus_repeat	Method
TCGGGTCTACAGCCGATAAAATACGCCGTGAGACCCG	CRISPRCasFinder

spacers of NC_015977_11

>11.1|2304911|45|NC_015977|CRISPRCasFinder
TTTTCTGGAATATTTTGATCATTTTTTCTATCTGCTGGAGCGTTC

CRISPR arrays and Neighbor proteins around NC_015977_11

CRISPR arrays

The CRISPR arrays of NC_015977_11

>merge|NC_015977|11|2304874-2304992|CRISPRCasFinder
TCGGGTCTACAGCCGATAAAATACGCCGTGAGACCCGTTTTCTGGAATATTTTGATCATTTTTTCTATCTGCTGGAGCGTTCTCGGGTCTACAGCCGATAAAATACGCCGTGAGACCCG

>NC_015977|11|11|2304874-2304992|CRISPRCasFinder
TCGGGTCTACAGCCGATAAAATACGCCGTGAGACCCG	TTTTCTGGAATATTTTGATCATTTTTTCTATCTGCTGGAGCGTTC
TCGGGTCTACAGCCGATAAAATACGCCGTGAGACCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014080250.1|2286372_2287155_-|2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate-hydrolase	unknown	unknown	gnl|CDD|366166
NC_015977.1|WP_014080267.1|2316560_2317688_-|glycerate-kinase	unknown	unknown	gnl|CDD|376844
NC_015977.1|WP_014080254.1|2291922_2294961_-|DUF4981-domain-containing-protein	unknown	unknown	gnl|CDD|236673
NC_015977.1|WP_143761706.1|2313884_2315201_+|family-1-glycosylhydrolase	unknown	unknown	gnl|CDD|225343
NC_015977.1|WP_014080263.1|2309872_2312077_-|beta-galactosidase	unknown	unknown	gnl|CDD|236657
NC_015977.1|WP_143761710.1|2318164_2318869_-|hypothetical-protein	unknown	unknown	gnl|CDD|380294
NC_015977.1|WP_014080253.1|2289214_2290015_-|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_015977.1|WP_143761704.1|2306760_2308962_-|family-78-glycoside-hydrolase-catalytic-domain	unknown	unknown	gnl|CDD|379971
NC_015977.1|WP_014080256.1|2296096_2296603_-|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl|CDD|100051
NC_015977.1|WP_014080251.1|2287254_2288037_-|ZIP-family-metal-transporter	unknown	unknown	gnl|CDD|223505
NC_015977.1|WP_014080249.1|2286090_2286354_-|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl|CDD|225328
NC_015977.1|WP_014080260.1|2305270_2306638_-|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240539
NC_015977.1|WP_014080255.1|2295160_2296024_+|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_015977.1|WP_143761708.1|2317931_2318120_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014080252.1|2288198_2288828_-|DUF3793-family-protein	unknown	unknown	gnl|CDD|378911
NC_015977.1|WP_143761826.1|2308999_2309821_-|TIM-barrel-protein	unknown	unknown	gnl|CDD|224007
NC_015977.1|WP_014080257.1|2296616_2298521_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|213197
NC_015977.1|WP_044024671.1|2298520_2304643_-|ATP-binding-protein	unknown	unknown	gnl|CDD|379062
NC_015977.1|WP_014080266.1|2315217_2316429_+|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_015977.1|WP_014080264.1|2312107_2313601_-|MFS-transporter	unknown	unknown	gnl|CDD|379134

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014080250.1|2286372_2287155_-|2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate-hydrolase	gnl|CDD|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	0.000158296
NC_015977.1|WP_014080267.1|2316560_2317688_-|glycerate-kinase	gnl|CDD|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NC_015977.1|WP_014080254.1|2291922_2294961_-|DUF4981-domain-containing-protein	gnl|CDD|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0
NC_015977.1|WP_143761706.1|2313884_2315201_+|family-1-glycosylhydrolase	gnl|CDD|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	4.1026e-79
NC_015977.1|WP_014080263.1|2309872_2312077_-|beta-galactosidase	gnl|CDD|236657	PRK10150, PRK10150, beta-D-glucuronidase; Provisional.	2.25817e-67
NC_015977.1|WP_143761710.1|2318164_2318869_-|hypothetical-protein	gnl|CDD|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	1.78704e-17
NC_015977.1|WP_014080253.1|2289214_2290015_-|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.13813e-28
NC_015977.1|WP_143761704.1|2306760_2308962_-|family-78-glycoside-hydrolase-catalytic-domain	gnl|CDD|379971	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.	5.82305e-101
NC_015977.1|WP_014080256.1|2296096_2296603_-|gamma-carbonic-anhydrase-family-protein	gnl|CDD|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	1.11115e-71
NC_015977.1|WP_014080251.1|2287254_2288037_-|ZIP-family-metal-transporter	gnl|CDD|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	6.96018e-47
NC_015977.1|WP_014080249.1|2286090_2286354_-|heavy-metal-associated-domain-containing-protein	gnl|CDD|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	3.4872e-09
NC_015977.1|WP_014080260.1|2305270_2306638_-|MATE-family-efflux-transporter	gnl|CDD|240539	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	3.25529e-91
NC_015977.1|WP_014080255.1|2295160_2296024_+|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.03377e-25
NC_015977.1|WP_014080252.1|2288198_2288828_-|DUF3793-family-protein	gnl|CDD|378911	pfam12672, DUF3793, Protein of unknown function (DUF3793). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 187 and 211 amino acids in length. There are two conserved sequence motifs: PHE and LGYP.	5.70188e-79
NC_015977.1|WP_143761826.1|2308999_2309821_-|TIM-barrel-protein	gnl|CDD|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.34819e-15
NC_015977.1|WP_014080257.1|2296616_2298521_-|AAA-family-ATPase	gnl|CDD|213197	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A. This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	0.000105147
NC_015977.1|WP_044024671.1|2298520_2304643_-|ATP-binding-protein	gnl|CDD|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.000160266
NC_015977.1|WP_014080266.1|2315217_2316429_+|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.85495e-26
NC_015977.1|WP_014080264.1|2312107_2313601_-|MFS-transporter	gnl|CDD|379134	pfam13347, MFS_2, MFS/sugar transport protein. This family is part of the major facilitator superfamily of membrane transport proteins.	2.86952e-32

Protein sequences

>NC_015977.1|WP_044024671.1|2298520_2304643_-|ATP-binding-protein
MGEDITVREIGIYLLNRVEVTLKDDSRAEGILQNITAETITVEGREIMLSDVADIRLAGELTDYDVMRDTGMIGNFTFAPEACRDAAELELMRYGDFACTVSCHLKLASGKICADDIRLVSHIHKICAEKLSRTAAIYSLFDGTFLVGRLQQDGTGMLEQSGGGQVPVDFAGVKEIFPLPETNDSLHVTMKDGSCREGVVSAVTDTMFVLIGEGVSMIPFADMQEIRYCGKVVRVREPGSRGKTDTWKIAVGSRDAEDGFWCRVPEHSGAAQIDVGDQVSFVPGITDCEWIAKDVRLVNAAGKEEPAEAGYTGRGIILFFPNALRTNGFIGNCYVSQNYAKMENAGLPRGNVMFSQEQIDFGFKPGNIYVVSYTCAKEPGEVVQEAVSVTLEKMYPYADYAKVWIDRNGEVKMLPVSVFYAKKFVGQDVEVLLSNGERTAGKLKEYTDEKLTLLAGDDGAEETVLQTEDIAQVRYVGLITAYRTDNGTGYISGEYWFHVNNLTDAGEASQLVLGRRVSFTLEQTLKGKLCAAKDVALISEKTVIAEEKQEESKPERLRGYIVKYMIKQPVSAGFGFIVPEEELEAHLEDKEGTVYFKQTDIDCETMPKLNTKSYYYEVLYTPYTLHGKTCAKDVKIGAGHPYPEKKSTAPVAVTAVTKKIVSKTLPLVEYLETEEARYVGASPKLGIISLYNGHYALISDCYINKKLVTDQEYAPDGAIAIFNPELAQIETEETIKTAKHCYLVKYVPGGTMVNEKTGMEHPSVDYNYPVLVLASFAKNQYICLKIEADALQVRKVEQVMSTLGTAVPEQVDFDIPELCSGESVIFEMTDSTAAYHVIDSVGDDFYRVKDGKQILKNEIQKIYRFGVVTDFNMEEGIAVINRVMNFSLTLADPNVINILKSQMNVTRLHVIFACEDNRITEVHRISEAYSGLIRWQEGTVTQCDELHRAIVVDQKAKHYMSVLSDGMINRAFKSHTLTGQRVFVKCVHHVFAEEGQTVLSLAESVIEIRCQRETATIQYDAGRDIYLGYRNATKYYPVYGASQILAGYVNKETAIVFAPGADGLELEARLVEAGGAQAQPEAQTEEFEADEASVTLENAIGENLAKFCMEQVDLSQLLLKGVTLNEQSMPENSENAQRAVDILHGQPGELQSFAAAKIALAYPEVELEHGAEAGGKYDRENQIGRLLIGTLQKNCRKIGLDANMVFGEQTYYLSVLLRYPLRKSNKKNAAQFSMGDCLYQLFLQDFGTREQLANYLQQGKTADRGQLETLLNQNCRQMSELISHMMLLDQKSMETVCAILKKNTTLTNELLRYAVQIDDMIRTTSLAEALQALRERYKKDRSRFSANLTGILSGSNISADVRELILNMQVRFLKLAGKDDRARFEKLQRACMSVCDYTNQPGFSLQERLLRDAYREIRELEEEIKKHPSREAVEILWMCTDGADGANIFAKLKKEIAQLLNSMYQDEKTRPKIWCKPNQELIENGQKTFWLIVGNGAANMNLQSADNVGIILESYTEGVDVPSKIVLEQKHLAAGDQIPVEVAISVEEGYTGSLNIGWSVEYEYTTAFLTGENDRNGSLQKKTVREDAGNYLELQYGTGRMEGKDTGAENPYLEPSQGQPLEDNKMFFGREEESREIRSSILRTVDGEEQFIPGSAVIIHGQKKSGKTSLVYQIKNYIKDNEKLRQKAIMLNFNNILDETGGVELLPYFKRSFYANILSRFENEIYDHHPDVVELLRQNQLEIPDLFDPAGNETWAALFERFFREFFRYDGGEHVILLFMDEFTLLCTTIMSEIRRDKEKNESLAAIPNFIKTFSQYGFIQVIIGHEAMMRAFDSLGVLNHTAEFAKSVEIAALDEEASVRLVKEPMERAFGYDVYDTELGRRAVEKLLDLSGCNPTYLMRLCSQMFAYFVSDRCPRSRILVSDVEEMVRQFIRELLLTDFDILLVEDGDSVEDPESRKTYQYLKSAAFATVKSFDQRTSDMKEINRKLTEEQGYSTEEIERTKNLLEARRVISITSGGRVKINTGLFVEFMLQKNGGRE
>NC_015977.1|WP_014080257.1|2296616_2298521_-|AAA-family-ATPase
MGELYIERKEVSQILRKKVFFVEEGDYGKCYSLIGPNGIGKTTLIRHLSDELERAAKPHTYYFNTVLEAGTSFWQFWTVLILKFSDTIGEEELRDAPVPNDRLVEKILKSYQFFEENIGHQDDVVFKMNATRELSSLFEYYTKLGIRMILTIDEFDRAQAIFKDGQFFQRLFGLTPKGANRLNLSIITISRRSVSTIAHHMQEGSNFQDAFPALALKGFSNEELEEYFNFYRDMPCGLLEEKERQQILCLCGRSPGLLMQMRDEIENLDGSPVDIGWIFRERGAFIKTAYERMCTLMRTEYVNQSKTRSSMGIFIEKFIGPAYSEKLNEWVEKLYDYGFVTRVEKSEKNVFELAGLTDYRDKGELVYEPISPYFVDFVKDFAVLDELDSLAAMLEQTERSIRDVLMRALSKEYSEEWETVLGQDVQRKDDYLENLRRIATENEADQRNIIISKLNVLAFNDYFQIIRKHWDIMKKYFSLYSSLDELKQDMYSLNNCRNTSAHLNLEILNESGRHDLRKICEFILENFKCAGGQRTAEAFGTAAEASAEKPSQPAGGTGAWHESMIGQTVTLTQTEATTTGVLRGVIAGTSHGASLSKKYLLGRGTPARMLAGKDQRIRLTRWDENAQKFNAELV
>NC_015977.1|WP_014080256.1|2296096_2296603_-|gamma-carbonic-anhydrase-family-protein
MNYKRITDLPGVRIAREAMVVGDVTIGEDSCVLFYSTVRGDEGTITIGRETNIQESCTIHASIEGDVVIGDNVTIGHQAVVHGCTVGDRTLIGMAATILDGAEIGCDCIVGAGSLVTKHTRVPDGSLVLGSPARVVRQLTEAEKKDIYRNSREYVKVAREMQEQGLLP
>NC_015977.1|WP_014080255.1|2295160_2296024_+|AraC-family-transcriptional-regulator
MYLNTGYLNHSHMDFKDKSRPLIVGSCGTYRLSRHPKLPTYRPRGRLDYQIIYITAGCGHFHFDNVNNETIVPAGNIVLYRPKELQKYEYYGEDKTEVYWIHFTGSNVKNILRQYGFPDKERVFQVGTSNEYEQIFKRIIIELQRCQDNYEEMLVLLLRHLLISFHRELTREHILKNEYLDYEMDNAVTFFSENYNQNINIDDYAASRGMSVSWFIRNFKKYTGSTPMQFIVGIRINNAQMLLETTTYSINEISKIVGYDNQLYFSRLFHKLKGYSPREYRKLRNKF
>NC_015977.1|WP_014080254.1|2291922_2294961_-|DUF4981-domain-containing-protein
MIVPRYYENLSVLHENTMPARAYYIPASRRMDNLVEHREESDRMQLLNGTWKFQYFNSIYDIQDSFFEKNYDTENFDEIQVPSVWQMAGYDTHQYTNIRYPFPFDPPYVPQDIPCGAYVHTFEYSRDEKAPKSFLNFEGVDSCFYVWINGSYIGYSQVSHMTSEFDVTDVLQDGTNTVAVLVMKWCDGSYLEDQDKFRMSGIFRDVYILKRPKQAISDYHIKTRIEDMLAKVEIEMKFYSPLNVKISIEDRNGAVVALGSIAEEGTAVLEIASPELWNTENPYLYKLILETENEVIVDHIALRKIEIKDQVIYLNGQKIKFRGVNRHDSDPVTGFTISLEQITTDLTLMKQHNFNAIRSSHYPNAPFFYEMCDKYGFMVIDEADIEAHGPFMIYRKEDTDYNRFKRWNEKIADDPVWEEAIVDRVKLMVERDKNRFCIVMWSMGNESAYGCNFEKALEWTKNYDPDRITQYESARYRNYDETYDYSNLDVYSRMYPALSEIQEYLDKDGSKPFLLVEYCHSMGNGPGDFEDYFQMIQDNDKMCGGFVWEWCDHAIAHGTAENGKTIYAYGGDHGEEIHDGNFCMDGLVYPDRTVHTGLLEYKNVYRPARVISYNKESGELVLHNYMDFDDLKDYVKISYELTQDGLVISKGILPEFSVAPHGEGKTNLKINVPENGKCYLKLIYHLKKELPLLDEDHILGFDEIEVSKEDTKCKLAEKWKPKTVVDSELQVNENDTQIHIKGREFAYTIDKRTALFTEMKFAGREYLNHPMELNIWRAPTDNDMYIKSEWKKAHYDKAYTRAYTTEVVQGKHGVKITSHASVVAETVQKILDVTITWKIEAAGKIDVDIAVTKDDEFPDLPRFGVRMFLDKKLSAVRYFGMGPQESYCDKHQAASHGLYRADVGDLHEDYIRPQENGSHYDCEYVELNNSRYGIVASAEKAFSFNASYYTQEELEKKTHNYELIESDSVVFCVDYALNGIGSNSCGPVVLEQYRFDDVLFRFQFTLIPYVKG
>NC_015977.1|WP_014080253.1|2289214_2290015_-|AraC-family-transcriptional-regulator
MQLKYVDTKEEIIAINRKSKHIEPHLHNALEIVCVTSGSLELGVGQELYHMEKGDIGFVFPDVIHHYQVLTPGVNKATYLIASPFTIAKFADIMQSMAPEYPIIKAEKVEPEVYRVINAILETEQSDITVAQAYFQIVLARCIGKLNLVEKSSVGSNDLIYQTVSYISANFKKKFSLEEMAKDLGVSKYVLSRLFSKTFHRNFNQYLNDARLNYACHRLENTSDSITNICLDSGFESQRTFNRVFKERYKISPSDYRSTCVKEMLS
>NC_015977.1|WP_014080252.1|2288198_2288828_-|DUF3793-family-protein
MSRETWEILQQMEPKDVELQLALQCAPLIAGLKPSNLFNIPCEGVCQVRELIRDTGISMYVLFSTGRKAAVLLYRRESLEEYMEQEQVKRMLHKLGYQDTSLEAVLPVFRMRYRRYMQERRDFPHEMGLLLGYPVEDVRGFIEHQGRDYLCTGYWKVYENLEQKQQLFQRFEYAKENLVLLLSYGVGMADIMDIFGGTGQKTLYQECAG
>NC_015977.1|WP_014080251.1|2287254_2288037_-|ZIP-family-metal-transporter
MNWSVFYGILIPFLGTSFGAACVFFMKKEMGDRLQRMLTGFAAGVMVAASIWSLLIPAMEQVVDMGKLAFVPAVAGFWCGILFLLLLDHIIPHLHRNSQSAEGPKSQLKRTTMLVLAVTLHNIPEGMAVGVVYAGYLAGSTQISAAAAMALSLGIAIQNFPEGAIISMPLRAEGTGKPKAFLGGVLSGIVEPIGAILTILAAGLIVPALPYLLSFAAGAMLYVVVEELIPEMSQGEHSDVGTIFFAVGFSVMMMLDVALG
>NC_015977.1|WP_014080250.1|2286372_2287155_-|2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate-hydrolase
MKVYEVGEQGKPVLMLLPGTGCYWRSNFGKVIEPLAETFRVACVSYDGFDETEQTQFPTMIEETAKIEEYIKEHYDGKICAAYGCSLGGSFVGLMAARGVIHMDYGILGGSDLDQSAKLPAKLMTALMLPMIYPFLTTGRFRLPFLNRKLEKWRKAGDGYVDAFIGMMRGAGVDLSFITKESLRNQFYSDLITPLPDAIDPAGTEIHILYALKMGEKYRARYHRHFAHPVLHELDMQHEELLAVHPKEWVELIEDICRQK
>NC_015977.1|WP_014080249.1|2286090_2286354_-|heavy-metal-associated-domain-containing-protein
MEKIVVKVDGMQCGMCEAHVNEAVRAAFPVKKVTSSHAKGETVILTEQDIDDAKLKEVIDKTGYEMGTVTREPYEKKGLFSAFRHEK
>NC_015977.1|WP_014080260.1|2305270_2306638_-|MATE-family-efflux-transporter
MFAKINFHDEFYQKLKLLVLPITMQQFMLALVSATDAIMLGAVSQTSLSAVSLAGQIQFVLNLFISGISAGSGIMAAQYWGKKDAASIEEVMPIALRTNLIFSGAFTVFAAVAPEVLMRIFTSDPALIESGAVYLRAVSLSYLLCGISQIYLILLKNTGYATVSSRISCTAVVVNIICNAILIYGLLGLPALGIQGAAYATVAARLVELVWSYLETKQSGRVQIIWKKMFHAADAVLTKDFWRYTMPVLGAALVWGIAYVSYSVIMGHMGSDAVAANSITTIAKNMLSCLIRGVSGGAGVLIGNLLGAGELDKAKVYGGRLTRMAIVVGMTTGGLLMLISPLIVRFAPLSETAAEYLQYMLIFCGCNIMAQSVNTTVLDGIFCAGGDSKFDMKGNLGAMWCFSVPFGFFAAFVLKWPVMVVYCIVNLDEIVKIPAVYLHYKKYIWVRNITVQEDA
>NC_015977.1|WP_143761704.1|2306760_2308962_-|family-78-glycoside-hydrolase-catalytic-domain
MEELRKQWITSEKEYREGEVFVYRQKFTASQVKKAVFYGTALGVYEAELNGTKIGSQMFAPGFSYYPRRVLYQTHEVTELLREGENTLTVYLGQGWYCGRFLCENQTQIYGEQPAVAWILELEDAAGSRRIVSDETVEELESPYEYAGEYDGEIYFADGRENVTGHASAYTKEAPFALEPTLTEVRLQDEMPVREATVHGDVTILDFGQNFAGIVEIDPSFLKNETITIRHGEILNADGSLYTANLRKAKATIVYHAGAEKKKYRPRFTYMGFRYMELSGAAYQPGMIRAYALHTEMKRTGYFSCENPLVQKLYENQVWGQKSNYVEVPTDCPQRDERMGYTGDGQVFALTGAYNFNTDAFWKNFLRDLELGQLDNTEGYVCATVPQTGPAGIGFISMLGWGNAVTILPEMMYRQFGDEEALPRQYESMKLFVEAEIRKMGKKNLWIGPSLGDWLAMGKGIAWQAMHNNPVSNAFIVHDLKVISETAERLGKREDAARYRRQLAATTDAYIKKFVSKNGIVAKDYQSAYIMALKYVLPEGELRERVKKNFVANIRKNGLQTGFFATEHLLPLLVEAGEQKLAYDVLLQENCPGWMYQVKCGATTTWERWDALKPDGTVNEEKMAGSGENMVSFNHYAFGSVGEFYYQYILGIRPEKPGFAKLHFAPYPDERLGGVSGSYLSVAGKIESAWRYEADGCHIRLATPVEAVVLLPDGRSENVPAGTYEWTVKRPNL
>NC_015977.1|WP_143761826.1|2308999_2309821_-|TIM-barrel-protein
MLGTVTKNEKQTAETLRRIRAAGYDGIELNGFMVKPTSFLVRMLTKAAGMPVGKGGSYDWNALVKEAGLCVTSIHEDLGTIRREPETVAKEAEAFGTKYVVITGMYRFDYSDKAAVQGLCRDLNTSGKILKEAGIELLYHNHNCEFLHVEPQKTAYDLLLSETDPEYVNFELDSYWPTEAGVDALALMKKLDTRMKLYHINDRGTRLLKPAMTPILKSDSMELGCGNMNLDALIAQAKNVNVDAVILESHKNWVDNSPLRSLEVSAQFLNARI
>NC_015977.1|WP_014080263.1|2309872_2312077_-|beta-galactosidase
MRNTIVLEKDWTFYKNPQSESGEAVTLPHTWNAVDGQDGGNDYYRGTCKYVRHFAKPELEKGGRAYLEFNGAAMTADVVVNGTKLFHHEGGFSTFRVDVTEQLTEDNLLEVYVDNSDNTKVYPQKADFTFYGGLYRMVKLVTVPKVHFVMDYAGGNGMKVTPEVTILDAAEKQADADVTVELWMTGEAPDVTVTVAGETQTVPVENGYAKAVFALKNVHLWDGVEDPYLYTVKAELPGGDVVERTFGCRSFKIDPKEGFFLNGRSYPLRGVSRHQDRAGAGNALTYEMHREDMAIVRELGANTIRLAHYQHAQEFYDLCDENGIIVWAEIPYITMHMTDGTENTLSQMKELIVQNYHHPSIVCWGLSNEITAASAVNEELLENHRRLNDLCHELDKTRPTVMADVFMLETDSPMLEIPDMNSYNLYFGWYIGELEQNDSFFDEYHSTYPDRVIGLSEYGADANPAYHSANPERGDYTEEYQCVYHEHMAKMIEERPYLWATHVWNLFDFAADGRDEGGKHGENQKGLVTMDRRIKKDAFYVYKAYWSKAPFVHLCGSRYTDRAEDVTEIKVYSNQKKVSLFVDGAEKETKEGARIFRFRVPITGTHTIRVVSGDCTDEITVRKVDTPNPDYIFNKQGDVVNWFDKEDFKADHYSISDTLGELAKNEMANAIVQSLMAQASASRGDVAESVKDNPALQRMMQRMTLASLLKQAGDAVSEEQMKALNDALQKIPKN
>NC_015977.1|WP_014080264.1|2312107_2313601_-|MFS-transporter
MFGKKKEQSVETNGIVYRRAKTWRVALAGCSSGIGMCFYVLLGLASYVANEGYGIATAVVGIILTATRILDGVTDPIIAIIIDKMNTRFGKIRILMVAGWLIESLAVLIMYCWASGKGHGIVLFVLLYCLYVIGYTMCNVTAQIVPAMLTNDPKQRPMVGVWSTAYNYLVPMILNIVITVILLPKYGNVYSVEMLAASCIVCVAVSGVGLLLCSIAVSDIDKPENFVGVASKKKAEPVKVKDMWELVKSNRALQTFIVAASSDKIASQTASQAVVTTMLFGIIIGNMQLGTILSVIGMLPSIIFAFIGAKYAGKHGNKEAMVTWTYVCITVAAVLVVLFIFIDPTLIATTLPMMIVYVLLTLVLNGAKMCVTMSSNAMMADIIDYELDRSGKFIPAAVTGTYSFIDKLVSSFSAAIATGLVALIGYRHTMPQPTDPSTPAIFWMTMSMYFGLPLIGWVCTLCAMRETPLSKEKMEEVQKSIQEKKQAEVEKVIEEMK
>NC_015977.1|WP_143761706.1|2313884_2315201_+|family-1-glycosylhydrolase
MEDFMRLPEHFLIGAATAAHQVEGNNIRSDLWAMEHMKHTSFLEPSLDAVDHYHRYEEDIKLLSDAGLNAYRFSIEWARIEPEEGVFDAGAVAYYHDVIACCKKYGVEPFVTLHHFSSPKWLMTKGGWEASTTPADFARYVHYIMEELGSELHYVCTINEANMGIQVAAIAERYKRQMMAQMQAAQTAPRSGDSADGTVQVGINLEKMMENQKATALENMEVFGVEKVENFTSMRTREGDLLIMKAHELARKEIKALYPDIKVGLTLSLHDIQPQAGGEARAASEWDEEFLHYLPYIKEDDFLGVQNYTRSLIGPDGQLPNPEGAELTQMNYEFYPEALEHVLRRVAEDFHGDLYVTENGIATSDDTRRVAFIDAALNGVAACIRDGLPVKSYFHWSLLDNFEWQKGYSMTFGLIAVDRSTQTRHPKESLRFLGSWNR
>NC_015977.1|WP_014080266.1|2315217_2316429_+|AraC-family-transcriptional-regulator
MDIKERLSFFQEMVQCEYPLHLWHYSPEFELIETDCPAELMLPDIISMLGFSSLVLAHIESGNRMPLILDTEFGLLWIAGFEYQGFALQQIHIVGPAFTGSNSHLVLRKKLDSYQLTVKLRSKIVKQIESVPIIPSSVLLSYAIMFHCAITGERITADLISFTSHSTTSVPDDSPLLSGEHPGIWMAEQTFLSMIREGNPEYKKALAKSMTLSSGVKAEIGDSLRMSKNNLLVLLTLCSRAAIDGGLNPSIAYTLNDYYAGRIEECKTTADTTNLSREFLDDYVHRVRAAKETNAHSRQIQNICDYISLHIREPLSISLLSERLGYTEYYFSHKFKEVTGESVNAYIRRKKIEEAKLLLSGTRMSIQDISDELSFGSRSFFFSSFQKETGMSPTAYRGEHCKG
>NC_015977.1|WP_014080267.1|2316560_2317688_-|glycerate-kinase
MDVMVLIDSFKGSMTSMEAGNAARDGVLRVYPHANVTVRPLADGGEGTTDALIEGLGGRKVELSVTGPMGSRVKAYYGILADEKTVVMEMAQAAGITLVEEAQRNPGKATTYGVGEMIRDAVSRGYRKFIIGIGGSATNDGGIGMLRALGVKFLTKDGEEAGEGADALGKIHFVSLEHLMPELKECDFQIACDVTNPLCGEKGATYIYGKQKGIREEEMPRIDADMKHYAAITAERIGVDYAAREGAGAAGGMGYAFISYLGARLVPGIELILDVIHFEEEAKKAQIVLTGEGRLDLQTAMGKAPVGVARAAKKYGCKVIAFAGSVTKEATACNDNGIDAFFPIVRGVCTLEEAMQREKAMENLTDSVEQVFRLL
>NC_015977.1|WP_143761708.1|2317931_2318120_-|hypothetical-protein
MAGLDLTQTIIKQIPIPDTKSFEKELVYMGEKATIEKHINSRIRMLYASNQRLDNLFADVSI
>NC_015977.1|WP_143761710.1|2318164_2318869_-|hypothetical-protein
MLVGPNGYDFSGKGTLNVMGANKQPYRNVAVPMQGTSTGNAKELVGYFWKHFGETDWVAVSNGGGYCRWQGLNDSVVKWGKEGEYIKSQKGSALRNVKYFGDTQMLFSDTGTAGLNVRVLLDNQIFIASGPGIRVVEGNEYAHLAFLNSRIAAYYVRMMSPKLTIAGGYIGQIPVNDNIYSSVVLEKEARLCVELKRKMLSTRPNNIEYESTYIQNISGNLLNDACLRRKCYTY

Crispr_ID: NC_015977_12

• CRISPR_ID: NC_015977_12
• CRISPR_location: 2374871-2374974
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015977_12

Consensus_repeat	Method
GCTCCTCGCCGTGACAGTTCGATTCC	CRISPRCasFinder

spacers of NC_015977_12

>12.1|2374897|52|NC_015977|CRISPRCasFinder
GCTTCGCTTCTTCTCGCTGTGGGCTGTCGCATTCTTCTGCAACCAGCTCTGC

CRISPR arrays and Neighbor proteins around NC_015977_12

CRISPR arrays

The CRISPR arrays of NC_015977_12

>merge|NC_015977|12|2374871-2374974|CRISPRCasFinder
GCTCCTCGCCGTGACAGTTCGATTCCGCTTCGCTTCTTCTCGCTGTGGGCTGTCGCATTCTTCTGCAACCAGCTCTGCGCTCCTCGCCGTGACAGCTCGATTCC

>NC_015977|12|12|2374871-2374974|CRISPRCasFinder
GCTCCTCGCCGTGACAGTTCGATTCC	GCTTCGCTTCTTCTCGCTGTGGGCTGTCGCATTCTTCTGCAACCAGCTCTGC
GCTCCTCGCCGTGACAGCTCGATTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014080318.1|2373880_2374834_-|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_015977.1|WP_014080315.1|2368021_2369191_-|galactokinase	unknown	unknown	gnl|CDD|235407
NC_015977.1|WP_014080312.1|2363934_2364996_-|histidinol-phosphate-transaminase	unknown	unknown	gnl|CDD|235440
NC_015977.1|WP_014080316.1|2369412_2370525_-|glycosyl-hydrolase-53-family-protein	unknown	unknown	gnl|CDD|226385
NC_015977.1|WP_014080325.1|2381534_2382542_-|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NC_015977.1|WP_014080326.1|2382824_2384825_+|beta-galactosidase	unknown	unknown	gnl|CDD|367090
NC_015977.1|WP_014080309.1|2361896_2362514_+|DUF1836-domain-containing-protein	unknown	unknown	gnl|CDD|378076
NC_015977.1|WP_014080319.1|2375083_2375302_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014080329.1|2387495_2388824_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|182528
NC_015977.1|WP_014080328.1|2385438_2387340_-|EAL-domain-containing-protein	unknown	unknown	gnl|CDD|238923
NC_015977.1|WP_044024676.1|2388823_2389504_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213222
NC_015977.1|WP_014080314.1|2366426_2367989_-|UDP-glucose--hexose-1-phosphate-uridylyltransferase	unknown	unknown	gnl|CDD|235382
NC_015977.1|WP_014080322.1|2378166_2379618_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NC_015977.1|WP_014080313.1|2365007_2366219_-|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl|CDD|180720
NC_015977.1|WP_014080320.1|2375274_2377125_-|hypothetical-protein	unknown	unknown	unknown
NC_015977.1|WP_014080310.1|2362578_2362875_-|TrpR-YerC/YecD	unknown	unknown	gnl|CDD|188231
NC_015977.1|WP_044024976.1|2377318_2378167_-|ABC-transporter-permease-subunit	unknown	unknown	gnl|CDD|226354
NC_015977.1|WP_014080311.1|2363072_2363972_+|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl|CDD|376806
NC_015977.1|WP_014080317.1|2370581_2373761_-|DUF4981-domain-containing-protein	unknown	unknown	gnl|CDD|236673
NC_015977.1|WP_014080324.1|2379821_2381129_-|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270373

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014080318.1|2373880_2374834_-|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.02272e-23
NC_015977.1|WP_014080315.1|2368021_2369191_-|galactokinase	gnl|CDD|235407	PRK05322, PRK05322, galactokinase; Provisional.	0
NC_015977.1|WP_014080312.1|2363934_2364996_-|histidinol-phosphate-transaminase	gnl|CDD|235440	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional.	0
NC_015977.1|WP_014080316.1|2369412_2370525_-|glycosyl-hydrolase-53-family-protein	gnl|CDD|226385	COG3867, COG3867, Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism].	1.71062e-140
NC_015977.1|WP_014080325.1|2381534_2382542_-|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.98963e-75
NC_015977.1|WP_014080326.1|2382824_2384825_+|beta-galactosidase	gnl|CDD|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	1.50435e-74
NC_015977.1|WP_014080309.1|2361896_2362514_+|DUF1836-domain-containing-protein	gnl|CDD|378076	pfam08876, DUF1836, Domain of unknown function (DUF1836). This family of proteins are functionally uncharacterized.	2.86412e-40
NC_015977.1|WP_014080329.1|2387495_2388824_-|ABC-transporter-permease	gnl|CDD|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	1.13955e-45
NC_015977.1|WP_014080328.1|2385438_2387340_-|EAL-domain-containing-protein	gnl|CDD|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.92118e-61
NC_015977.1|WP_044024676.1|2388823_2389504_-|ABC-transporter-ATP-binding-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.92335e-109
NC_015977.1|WP_014080314.1|2366426_2367989_-|UDP-glucose--hexose-1-phosphate-uridylyltransferase	gnl|CDD|235382	PRK05270, PRK05270, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
NC_015977.1|WP_014080322.1|2378166_2379618_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	5.15514e-55
NC_015977.1|WP_014080313.1|2365007_2366219_-|pyridoxal-phosphate-dependent-aminotransferase	gnl|CDD|180720	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase.	0
NC_015977.1|WP_014080310.1|2362578_2362875_-|TrpR-YerC/YecD	gnl|CDD|188231	TIGR02531, conserved_hypothetical_protein, TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence. [Unknown function, General].	5.58032e-47
NC_015977.1|WP_044024976.1|2377318_2378167_-|ABC-transporter-permease-subunit	gnl|CDD|226354	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism].	6.63412e-80
NC_015977.1|WP_014080311.1|2363072_2363972_+|CPBP-family-intramembrane-metalloprotease	gnl|CDD|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.03463e-14
NC_015977.1|WP_014080317.1|2370581_2373761_-|DUF4981-domain-containing-protein	gnl|CDD|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0
NC_015977.1|WP_014080324.1|2379821_2381129_-|extracellular-solute-binding-protein	gnl|CDD|270373	cd13655, PBP2_oligosaccharide_1, The periplasmic binding component of ABC tansport system specific for an unknown oligosaccharide; possess the type 2 periplasmic binidng fold. This group represents an uncharacterized periplasmic-binding protein of an ATP-binding cassette transporter predicted to be involved in uptake of an unknown oligosaccharide molecule. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.96676e-110

Protein sequences

>NC_015977.1|WP_014080318.1|2373880_2374834_-|AraC-family-transcriptional-regulator
MGKKKKDTIELRFYEIPQNEYVLALLGENWIRDYGHDEVHLHFHNLMEIGVCRNGTGKLILDEEQRPYQPAMVSIIPNNYPHVTISNTKEGPSYWEYLFFDPAQIIAEMYPKNELFCRELIRKVNRRALFLHEWENHNLAFLVRQIMEEMRGRRSHYTDSVRGLLYSLVIEIIRLNEEQEAKQEVQGVEMQKHSGVTQIAAALDYVRMEYMHMIRVEELAQECHMSETHFRRLFESCMNMSPVDYINLVRIQKACDLLKKTTDSMDIVAQKVGFTTTSTFNRNFKKFLNTSPYQWKINPENYETKLLNYNISARKGW
>NC_015977.1|WP_014080317.1|2370581_2373761_-|DUF4981-domain-containing-protein
MGEFLFERLSDPEYYEENRVAAHSDHVAYRNWDEADVWLDPLGRKSSFRLFLDGSWKFHYARNYEQTIHGFEKPEYDCRGWDDIRVPAHIQMEGYDSPQYANTQYPWDGREDVWTDEMPTKFNPVASYVKYFTLPESFLGERVFISFQGAESGMALWLNGAYVGYSEDSFTPSEFELTPYLKDGENKLAVQVFKWTIGSWCEDQDFFRFSGIFRSVYLYMIPKTHLCDIKIRPQVAENLSCGTLELDLRSCGSGSVRIQLVERGRLDLAESRYETPEGTEVFALEEKMEGTLHVSREVADVKLWSAEEPYLYELRMEVYDAAGALQEVVASKIGFRRFEMKDGLMLLNGKRIVFKGVNRHEFSSLTGRVVSMEETLTDVVTMKRNNINSIRTCHYPDNIGLYELCDIYGLYMIAENNMESHGSWDAAAMRKIADPRTIVPGDNPKWEARMLDRVNSCYQRDKNHPAVLIWSCGNESYGGSVIYQMSEKFRELDPDRLVHYEGVYNDRRYNGSSDMESQMYPPVERIVKNLAEQKEKPFICCEYTHAMGNSCGAMHKYTDLTDTEPRYQGGFIWDYIDQSITKKDRYGKEFQAYGGDFLERPTDYNFSGNGICYAKGRAESPKMQEVKFNYQNISVSFTEDGFTVKNKNLFTDTAEYDCILLLEKNGVAAGRRKIALSVAPLSEKTFVLEELEGCMALADELEHAGKEAGAEYALTVSFVLRGELLWAKPGHEIAFGQKIFAAKSPANGGTIGDAAAEYEGKCVTNRKAGLQIIRGKWNLGVKGENFDVLFSYNSCGLVSYRYMGKELIEKIPMPNFWRAPIDNDCGSRMQGRMAQWKIASMYAGMSSKGMFDYEEPVVREAENSVSITYTYLLPTTPQAKCRVTYTVTPDAYVQTELTYDPVEELGDMPEFGMLFKLNADYDRLEWYGLGPQETYADRRCGAKLGVYKNRVADNMAQYLVPQECGNKVGVRYAKVTDARGRGMLFTGDELSFSALPYTPHELENAMHAYELPEVHYTVVRVALAQMGIGGDDSWGAPVHPEYHIDVTKPLALRFGFRGI
>NC_015977.1|WP_014080316.1|2369412_2370525_-|glycosyl-hydrolase-53-family-protein
MKFVKGMDLSTLLELERCGAKYYDNGEERDLLAIMKSYDVDTIRIRLWNDPWSETGESYGAGENDLKTSLEIAKRVTAAGFGVLLNFHYSDFWADPGKQIKPKAWADYGVKELEQAVYDYTLESMQTFLDAGVNITMVQVGNELSNGLLWPEGKVPNYDNIATFVNAGIRAVRKADAAIPVMIHLDNGGNNALYREWFDNFTKRGEDFEIIGLSYYPFWHGSLQMLNDNMNDIAERYGKDLVIAEVSMGYTMEDYKNYEKLSDEERKGYATRPALVEKIEYPMTKQGQYDFMEDFLNRISHIKGGKGKGFFYWEPAWIPVPGSGWATPASLKYMNDPGPCGNEWANQALFDYDGNALPTLALIRDFKPEV
>NC_015977.1|WP_014080315.1|2368021_2369191_-|galactokinase
MIWEPVLAKFKELFGDEGEIGVYFAPGRVNMIGEHTDYNGGHVFPCALTIGTYGVARKRDDKKLRFYSMNFENLGVLESSVEGLKPEKEADWTNYPKGVMWAFGEKGMKVESGMDLVLFGNIPNGSGLSSSASVEVLTGFILRDMFGFDVTNQDLALIGQYSENKFNGVNCGIMDQFAIAMGKAGHAIFLDTATLKYEYAPIRLENAKIVISCSNKKRGLGDSKYNERRSECETALAELQKVVKINALGDLTEAQFEQYQDAITSPVCQKRAKHAVYENQRTIKAVEALQNNDVALFGKLMNDSHVSLRDDYEVTGIELDTLVEEAWKIDGVIGSRMTGAGFGGCTVSIVKDDAVDAFIEKVGTAYKNKIGYAADFYVVEIGDGPVKLA
>NC_015977.1|WP_014080314.1|2366426_2367989_-|UDP-glucose--hexose-1-phosphate-uridylyltransferase
MIQERILELTEYGLVTGLIEPQDKRFTINRLLELFHIDELEDEVTAAYEKRTPMTQESAEEALPQILAEMLDYAAEQMLIPDNTITYRDLFDTKIMSMLVPRPSEVVRRFYDLYEKESPQAATDYFYKLSRDTDYIRRYRVKKDLKWTADTEFGTLDITINLSKPEKDPKAIAAAKLAKQSGYPKCLLCKENEGYAGRINHPARQNHRIIPVTINQSDWFFQYSPYVYYNEHCIVFNANHTPMKIERATFGKLLDFVQQFPHYFVGSNADLPIVGGSILSHDHFQGGHYEFAMAKAPVEREITFKGYEDVKAGIVKWPMSVIRISATDKDRLIDLADKILLAWRGYTDEAAFVYAETDGEPHNTITPIARRRGDAYELDLVLRNNITTEEHPLGVYHPHAKLHHIKKENIGLIEVMGLAVLPARLKDEMADLEQAILDGVDIRADEKLAKHADWVEEFLPKYGFTAGSGLEGEITPERLHEIVQTEIGLVFKEVLTDAGVYKCTEEGRAAFMCFVDTVNA
>NC_015977.1|WP_014080313.1|2365007_2366219_-|pyridoxal-phosphate-dependent-aminotransferase
MVSKRIQKALEGNSAIRAMFNEGREMAAKYGEENVFDFSLGNPATPAPKALNDAIRDLLDEADAKGAAGSLGIHGYMANAGYEEVRQAIAENLNERFGTKFTAHNLVMTVGAAGGLNIIFKTILDPDDEVIVFAPFFGEYRQYAANFDAKIVIVQPNLETFQPDLADLESKITARTKALIVNTPNNPTGVIYKPQTMEQIGAILEKKQAEFGTDIYLISDEPYRELVYDGNKEDFLTKYYRNTLVGYSFSKSLSLPGERIGYVVVPDEAADAEELIRGIEISNRTLGFVNAPSLIQKAVARCLAEKTDVAFYDENRSRLYEGLTKLGFTCIKPEGAFYLWVKSPVENEEEFVNEGKKFNLLMVKGSAFGCPGFVRLAYCVSHETVEHSLPAFAKLAAVYGLDK
>NC_015977.1|WP_014080312.1|2363934_2364996_-|histidinol-phosphate-transaminase
MENWESYVRKVVPYVPGEQPQAERMIKLNTNENPYPPAPGVQRALAGFNPDTLRLYPEPTCKVLVDAIASYYGLGSDQVFVGVGSDDVLAMIFLTFFNSGKPVFFPDITYSFYDVWADMLRIPYETKALDDAFEIRVEDYYGENGGVIFPNPNAPTGILMPLDKIEDIIAHNRDVIVVVDEAYIDFGGVSALPLIEKYDNLLIVQTFSKSRSMAGMRIGYAMGNAKLIRYINDVKYSFNSYTMNRTALALGVEAIRDRAYFEETRKKIIETREWTKKELRALGFTFGDSMSNFIFASHERVPATELFEALRREHIYVRHFTKERINNYLRISIGTREEMETFIRFLKEYLKEA
>NC_015977.1|WP_014080311.1|2363072_2363972_+|CPBP-family-intramembrane-metalloprotease
MKKLKQFLFIFVPLLLVIAIQFLATYFAMGLSLLIESGWYSVTGSAGFLDIVDDAFSLWSSQRFNTGVLLIYNAMSIAVFGLWYYCRYGGNYRPALRQTFHPAAIAGIVMLMPGTQYLTTYIMSFVAALFPHWMDAYESLLETAGLDDQISILMVVCSVIFAPFCEELVFRGVTMHQAKKCLPFWAANLLQALLFGIFHMNMIQGIYAFCLGLVLGYVCNRGGSIYYSILLHMLFNFWGTVLSGLIPFGDTTFSLIFWFLFGIAMTVGGLIVFTSGIRKLQAAGRSSAMPLSDIPSGTE
>NC_015977.1|WP_014080310.1|2362578_2362875_-|TrpR-YerC/YecD
MSKKLRTDAVDHLFDAILSLQNREECYTFFEDVCTVNELLSLSQRFEVAKMLRDQKTYLDIAEKTGASTATISRVNRSLNYGNDGYDMVFSRMQNTDK
>NC_015977.1|WP_014080309.1|2361896_2362514_+|DUF1836-domain-containing-protein
MDNDTKKFLSDLLAELQRIDYVRPEDIPNIDLYMDQITTFMDSQLETSKRHADDKILTKTMINNYAKNNLLPPPEKKKYTKEHVLTLIFIYYFKNILSISDIQSILNPITDKYFGKDGSYSLEDIYREVFGLEHQETQNLMKDLARKFNTSCQTFPDAAPEDAELLRNFSLICMLSYDVYVKKTIIERLIDTTTSDKSKAEKNKK
>NC_015977.1|WP_014080319.1|2375083_2375302_-|hypothetical-protein
MAQLGKGKLNYRCPSCFLRDLDIDMFYNKETGIYSCIRCQYRGTEEDVLEKNEMIRFRYKAMHQRFDKFDFD
>NC_015977.1|WP_014080320.1|2375274_2377125_-|hypothetical-protein
MDQFILNLIHRPEMVPEYSATVTGQGKEEDIGDKALLTESLDIFKTQQRLAHENGLKVTIQMTYASLFNDEAVEIAKHDHDVYGDEIALSLLGLPCEEFREKYKTKDFCIWMFSMEDKKAIVNDVFEKFHDRFGFYPESTGSYYMDADLTNYIKAAYPTVKCAVATCWEEGPKAYHTCNNSWYTLFDGGPWAPWIPSKQNTHAPAANAAEDSGIVAIPHLSRDLIACYDGNGSNFGTHPQNVLRGMIYDTKTWEYPYLYNLIDQYRSLGKYNNGYAYNMMFVGPGWMNKMGRWEQPYELLYKSYSDGCAYYGKLKKEGKLVDMTMSEFADYYREKKGVDAGNYNEPECALWRDILYGSDKQLFWYCDPYMRACVNMDQGGAIVDLRPYAAKLEWPVGIGTKHVQDASYPFLIQEKYRAGYFTHYAGEGTVRSAKLSYKGEEVDLCLCPTHAHFSQEGKTRILTLDPVTIEFRDLTVKLQTKEYFEEGSSNIKIERTILEMSDPSAEVTLNEYMVACYGTTEYSEDMSHITLKIDGPEEKTIHYEYKCREEGVKGATEVSAVIPEIETRVSMTASNADAEGYVKEGYAFSPMFTLGYRKTISDKEVFATWLNLAKAN
>NC_015977.1|WP_044024976.1|2377318_2378167_-|ABC-transporter-permease-subunit
MGKRKIVNSVLLHVVLAVLAVIWITPIVWLIVTSFSGYDGMNTSRFFPETWSIRNYTRMLFEPDTVSQFPIWFKNTLVIAIFVCLISTSFVLMVSYAMSCMRFKGRKALMNIAVMLQLFPGFLSMIAIYFILKSVNLTNSHIGMILVYSGASGLGYLVAKGFFDTIPTSLREAAYLEGASEARTFFTIVLPLSKPIIVYTVISSFLVPWTDFVFAKIILNSGISTDWTVAIGLYNMLNRTLIPTYFSRFCAGGVMVGIPIGILFIIMQKFYVEGITGGSVKG
>NC_015977.1|WP_014080322.1|2378166_2379618_-|sugar-ABC-transporter-permease
MNSKEGKKNPVAAFFGAIGKFFKEFGEAAAKGDGAVKASLLVAGAGYWKRKQIIKGFLVTLLEIGLILYTVLIGVPYISQLNTLGTVERAMVYNPATMKNEVNDYDNSLLILLFGVISLSFLIVGILLWMANVRNTYRLQLRAEAGKHINTFKEDCNEMLNDKFHFTLLALPVLGVIIFNIMPLVVMICIAFTNYDKSHMPPNALFTWVGLANFKSLFTTSITSTFGYTFWRILGWTLLWAVLATFTTYFGGIILALLINNKNTKLKKMWRTLFVAAISVPQFVTLLLLRNFFANTGIVNSFCKSIGLVDLLQNLGWIKANYIPFLSDPVWAKITIVVINIWVGVPYLMLIATGVLMNIPEELKESAKIDGANSFQIFRKITMPYMLFITGPYLVTQFTANINNFNVIYLLTQDIYTTTNQKLAASWGKEIDLLVTWLYRLTSEQYNYKMASVIGICVFIVCAVITLFAFNFLIKGDKEDTFR
>NC_015977.1|WP_014080324.1|2379821_2381129_-|extracellular-solute-binding-protein
MKKKVLSALLCASMVATMVAGCGGSSSETTDSNAAADNSAADNSAAAGTEEAAAPAASGDTIALRVWAAEEDQTLTNELIEQFKEANPDQTFDITVGVESEANAKDDILVDPTAAADVFAFASDQLIDLVDAGVLQAVQDVDTVSSENVAGAVEAATVDGTLYAYPMSADNGYFLYYDSNVVTDPTNWDAILTDCAAAGKKAGMVLASGWYNAGFFYGAGFTTVLNDDGSTAMDWNGTSADGIKGTDVVDGMLAIATNPAFLPITDGDTANQIATGELGAIVSGTWDAAAVQEAFGDGYAACALPTYTCAGNQVPMGSAAGYKMIGVNANSAQVGWAMELAKFLTNEQSQETRFAERQIGPSNIAAGESDEVKANVAIAAVTAQNGANGVVQIVGSGYWDPSKAFGEIIAQGNPDGTDVQTLLDNLVESASQPTE
>NC_015977.1|WP_014080325.1|2381534_2382542_-|LacI-family-DNA-binding-transcriptional-regulator
MEKEEKKDITIADVAEALGVSKTTVSRAISGKGRIGKETRKRVMEYIEEHDYKPNAIAKGLAQSKTYNICVVMPRDYEVVDWNFFQRCLFGIQEMAETVGYDILLTMCQMNDISSLERIVANHKVDGVILMRTFLEDAQIEFLQQKNIPFVTTGSTNYEGVIQIDHNHRSACRELTSIILMKNLKRIALIGEDEGYMVTHSRLLGFRDAYEQQGETLDENLLYLSPENRVRVDRTVKEILEQNVDCILCMDDAVTSRVLKVLREQHVRVPQDVRVASFYDSTILENHVPSITSLAFDAKELGKVACRTLLDLVEGLEVKQKTLLPYEVVLKESTK
>NC_015977.1|WP_014080326.1|2382824_2384825_+|beta-galactosidase
MRTDHLLFGAAYYLEYLPYNRLETDMEMMERAGMNTIRIAESTWSTLEPSDGVFDFTCIDRMIQTAAKHHLSVIIGTPTYAIPTWLVRKYPDILAVTANGQELYGHRQNMDITHPGYRYHAERIIRAMMEHLKDVPNIIGFQLDNETKSYGTAGPRVQQMFVASLKKKYPDILDFNREFGLDYWSNRVNDWADFPDVRGTINQSLAAEFQRFQRSLVTEFLSWQSDIIKEYKRDDQFITQNFDFDWTDHSYGYQPEVDQYDAARCMTVAGADIYHPSQDDLTGAEITVCGNIARSLKKDNYLILETEAQGLTPWLPYPGQLRLQAYSHLANGSNSVMYWHWHSIHNAIESYWKGVLSHDFSENATYREASEIGAEWKRIGTHLMNLKKENRVAILLDNLSLAGLRQFPLETTGDHSYNAVMRWLADALYRRNIEFDMVSSGERDFSAYDFLVVPALYAASDDLLGALDRYVAEGGHLIATFRTGFADEQLKIHHDVQPHLLGRCLGIHYDQFTYPKNVRIATTDGRSALTHDWMELVTCDTATPLAHYDHPFWGSYAAVTENAYQKGSALYLGAFFDDELLEPLLVSYLSRHGYEGLSEDTPQFPLIVKRGTNDFGKNLCYYFNYSGEPRTVIHTGNAGTDLLTDTPVAAGAVLTLAPWGLAVVES
>NC_015977.1|WP_014080328.1|2385438_2387340_-|EAL-domain-containing-protein
MTDVLFYQNYTYVADISAIVLCIICWLLLHSSYTVREKSLIIFKAGTVCLMMATVCSISFHTAITRITESRKILIYVLQDGIYLLLILTFVLLCNYFGTLLKLEERPARLLGAVSWGGYAVFAFLEIGSPFTHLGFYIDADLMVHQNFYFDPFRFAYIYYCIVLVVVLFTYRKKFVLKMLRCLAYILLFSFGMIALEAEYVSTSYSCMALLLPYMGVLFLFHYTSYDRETGTLDAGAFDSYLRDVGDDDFSVIFMGFPETNLKKIPELPRTILTFAENYFKTFCLFRLQDDKLALVYQRLSNKAEKNGKYNIQKTFERVCKEHGLGYRVLIAHADDRLREAGEYLALNEFMEEKIPVGAVYECQNKDIIEYRKASYILGELKDINAHCDLEDERVKVYCQPVLNTRTNRFASAEALMRLELPETGMVYPDQFIPMAERHDYIHTLSKIILNKTCRQIKRLEQEGYQIDRVSVNFSILEFRRKEFCKDVMDIIRQNEIPYEKVAIELTESWNETEFDNIKNTITSLQKLGIKFYLDDFGTGYSNFERIIGLPIDVIKFDRSLTILAGKNAESRYMVGSFSDIFKNSHYEILFEGVENEKDEDQCKQMNALYLQGYKYSKPIPIEELTRFLGRAV
>NC_015977.1|WP_014080329.1|2387495_2388824_-|ABC-transporter-permease
MFFENIKEAIISILSNKMRSLLTMLGIIIGISSVIIITTIGGSIQSTLTATMNSLGGNTVSGYVEARYPEDDADWDTWIYPDMTQSDYVSQEMIDELVAQYPDEIQGIAAENYLGGGQIKDEADSDNYANVSVDGMTPEQFEYMKLEMQAGRNLTRADNLGKKRVCVVADTMAKNYFGDKDPIGETVSVTMDDGSIYDFVVVGVYKYNAALFGKVDTSVREKDRSTYMMIPIQTSFKLQGADKTGYEYFNLLLTPLADVNQATEDIQNYFDEVYQNNTNFHVTASNMQSSMGMINTVLNVITIAVSGIAAISLIVGGVGVMNIMLVSITERTREIGVRMALGAKRRTIRMQFVIEAIMLCLIGGIIGILIGVGVGALLGQAAKFVIANMYSEYSNYIIMQVHPSATAILLSLFFSMLTGVFFGYYPANKASKMEVIDALRYE
>NC_015977.1|WP_044024676.1|2388823_2389504_-|ABC-transporter-ATP-binding-protein
MEKIVKTYYVGKPNELEILHGIDLTVNQGEFVSIVGESGSGKSTLMNIIGVLDRQTSGSYYLEGQDVNGMTDEVRSAVRNRRIGFVFQNFNLLPRANALKNVMVPLIYGEEKTKNAKERAMEMLAMVGMDGRADHRPNELSGGQKQRVAIARAMINDPAIILADEPTGALDSKTGHMVMDLFHRLHEEQGKTIVLITHSQELATETQRIVTLLDGEIVGDNRGGEH

Crispr_ID: NC_015977_13

• CRISPR_ID: NC_015977_13
• CRISPR_location: 2759265-2764809
• CRISPR_type: TypeI
• Repeat_type: NA
• Spacer_info: 82 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3

Consensus repeat of NC_015977_13

Consensus_repeat	Method
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CRT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	PILER-CR
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	PILER-CR

spacers of NC_015977_13

>13.1|2759298|35|NC_015977|CRISPRCasFinder
TCCACTCTCACGCCTGTCTCCAAGCTGAGATCAAC
>13.2|2759366|32|NC_015977|CRISPRCasFinder
CCAGAACGGGCAACAACATCAGCCATCTGACT
>13.3|2759431|34|NC_015977|CRISPRCasFinder,CRT
AAAACCAAACAATACAACGAGAGATCGTTGTAAA
>13.4|2759498|33|NC_015977|CRISPRCasFinder,CRT
CCAGAATATCGGTGATCGTGGTTGCTTCTTCCA
>13.5|2759564|33|NC_015977|CRISPRCasFinder,CRT
TAATAAAAACGCAAATGGGTCATACTGATATTA
>13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT
TTTTCTTGTTGATACTATCATATCACTTTAAAAA
>13.7|2759697|36|NC_015977|CRISPRCasFinder,CRT
ACCGTGAAATCCATGTTCTGCTCCACATATCCAATG
>13.8|2759766|33|NC_015977|CRISPRCasFinder,CRT
AGTTGCGACCGTGGAGTCCGGGAACACTACAAA
>13.9|2759832|33|NC_015977|CRISPRCasFinder,CRT
AAATAATGACTTGCCCTCTTTCATGTAATTCGT
>13.10|2759898|34|NC_015977|CRISPRCasFinder,CRT
GCCACAGTTATCTCCTGTCCCGGCAGCCACTGCG
>13.11|2759965|33|NC_015977|CRISPRCasFinder,CRT
GTAGCTCCGCTGTTTTTATAATTGTAGCAAGGG
>13.12|2760031|36|NC_015977|CRISPRCasFinder,CRT
ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT
>13.13|2760100|36|NC_015977|CRISPRCasFinder,CRT
ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT
>13.14|2760169|35|NC_015977|CRISPRCasFinder,CRT
ACAAAGATGCTTCTTTTTGGTGTATATCCGATCAA
>13.15|2760237|35|NC_015977|CRISPRCasFinder,CRT
GCGCGTGCGATGGAAACTTTGAAGTACAGGTCGAC
>13.16|2760305|34|NC_015977|CRISPRCasFinder,CRT
CGATCTGCAATGCAGTGTATTTTTTCAATTCAAA
>13.17|2760372|35|NC_015977|CRISPRCasFinder,CRT
TGATTTTTGTGGCGGGAATTTTAAAAAATCCTTCA
>13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT
AAATCATAGTGAAGTTAAATTTGTAAAAGATAT
>13.19|2760506|34|NC_015977|CRISPRCasFinder,CRT
AAAAGGGGTGGTGCTAATGATAATTAAATACATA
>13.20|2760573|33|NC_015977|CRISPRCasFinder,CRT
TTGGAAATAGTATACGCAAGTCAAATTGCAGAT
>13.21|2760639|35|NC_015977|CRISPRCasFinder,CRT
ATAGCTGCGCCACTTGATATTGCTTCGCCATGGCG
>13.22|2760707|34|NC_015977|CRISPRCasFinder,CRT
ATATATCCGCATAACCACTCTATATCTTCAAAAT
>13.23|2760774|36|NC_015977|CRISPRCasFinder,CRT
GCACCTTGCGGAACGGAAATTCACTACACAGTAGAT
>13.24|2760843|35|NC_015977|CRISPRCasFinder,CRT
GACAACGCCATTGACCTTGTATGCGACAAGAAAAT
>13.25|2760911|34|NC_015977|CRISPRCasFinder,CRT
TGTTGCAAACATGAGAAACGGCATGGGAGTATAT
>13.26|2760978|33|NC_015977|CRISPRCasFinder,CRT
AACAGCTTCGGAGCTCCCCAAACTTGGAAACGG
>13.27|2761044|33|NC_015977|CRISPRCasFinder,CRT
TTATGACGCGGGAAACTATGGACGGTTAAATGC
>13.28|2761110|35|NC_015977|CRISPRCasFinder,CRT
ACGCCGTGCTGTCGGCATCTGACATGGAGTATTTT
>13.29|2761178|35|NC_015977|CRISPRCasFinder,CRT
ATCCTTTACAAACATAAATTCATAACCTAAATTAT
>13.30|2761246|33|NC_015977|CRISPRCasFinder,CRT
ATTGGATTACACCTAAAAGCATCAATCAATGAG
>13.31|2761312|36|NC_015977|CRISPRCasFinder,CRT
ATATACGGTCTCGCAGCGGAAAACGCAGAAGAGGGA
>13.32|2761381|35|NC_015977|CRISPRCasFinder,CRT
CACAAGCGACGGTAACAACACATCACAAGCAGATC
>13.33|2761449|35|NC_015977|CRISPRCasFinder,CRT
CAGTAGTCATTGATCTGATTTCTTACGTTTGCCAT
>13.34|2761517|35|NC_015977|CRISPRCasFinder,CRT
GTGTGAAGAACAAGGTAACAGATGCCGGATGGTCA
>13.35|2761585|34|NC_015977|CRISPRCasFinder,CRT
CGATTAAACTTATATTTCACAAACACTTTCGACA
>13.36|2761652|33|NC_015977|CRISPRCasFinder,CRT
TGTGACTCGTCTTGATCTTGCTATTGACAATGT
>13.37|2761718|35|NC_015977|CRISPRCasFinder,CRT
ACAGCTCCTGGGTGGTACTTGATGCAAACTGGGGC
>13.38|2761786|35|NC_015977|CRISPRCasFinder,CRT
ATCGTGACTGCGTGTATGTGCAGACCAAGACGGGC
>13.39|2761854|34|NC_015977|CRISPRCasFinder,CRT
TGATAACGCCTAGACTTACACCGTAGGCGCGCAA
>13.40|2761921|33|NC_015977|CRISPRCasFinder,CRT
TTCTTTGGTGAATTGTATCGGATAGGTGCATCA
>13.41|2761987|35|NC_015977|CRISPRCasFinder,CRT
TTGGACTCACGGAAAAACACCGCAAACATCTGAAA
>13.42|2762055|34|NC_015977|CRISPRCasFinder,CRT
GGGCATCGGGCAATGGATGATGCATGGAGCCATA
>13.43|2762122|34|NC_015977|CRISPRCasFinder,CRT
GATGGCGTACTGGCTGTCAGAACTTGCGCTTAGT
>13.44|2762189|36|NC_015977|CRISPRCasFinder,CRT
GGCGTTAGGGTCTGGCGTGCTCCGTGGCGATGAGTT
>13.45|2762258|33|NC_015977|CRISPRCasFinder,CRT
CATATAAGACGCCCTGGAATTCTGCGCCGACAG
>13.46|2762324|36|NC_015977|CRISPRCasFinder,CRT
GACATGGCTATTCTGAAGAACTGCGGCATCTCCAAG
>13.47|2762393|34|NC_015977|CRISPRCasFinder,CRT
CGGACAGATGGGCGGTAAGATGCTCGGAGGCGGA
>13.48|2762460|34|NC_015977|CRISPRCasFinder,CRT
GGAGATCGCACAGGCAATAGCTGACGGAAACCTT
>13.49|2762527|35|NC_015977|CRISPRCasFinder,CRT
CGATCAGACAAACGTGACGATCTCCGTCGATCTCG
>13.50|2762595|35|NC_015977|CRISPRCasFinder,CRT
AAAACAAACTCATGTTACGGTCGATTATGTACATG
>13.51|2762663|34|NC_015977|CRISPRCasFinder,CRT
AAACGGGCGTAGCTTGTCACGTATGACGCTATTT
>13.52|2762730|36|NC_015977|CRISPRCasFinder,CRT
TTTTGCGGCGGCAAACTGGGATGAATACCTCTGCAT
>13.53|2762799|33|NC_015977|CRISPRCasFinder,CRT
TGTCAAAGACGGAGTAACCAACTTGGACAACAT
>13.54|2762865|36|NC_015977|CRISPRCasFinder,CRT
CAGACACGGTAAATCTTGCCAGCACCTATAACTTCT
>13.55|2762934|33|NC_015977|CRISPRCasFinder,CRT
GGCGTTTGGAGTTATCAAAGAGATAATTCAATC
>13.56|2763000|34|NC_015977|CRISPRCasFinder,CRT
GACAACGCCACAGGATAACGACGAGGAGCAGGTT
>13.57|2763067|34|NC_015977|CRISPRCasFinder,CRT
TCTTGCAAGCCGTCAAAATCGTCTGCAATAGACT
>13.58|2763134|32|NC_015977|CRISPRCasFinder,CRT
CACAAGCCTGTCATCCTCAATGTCGGAATATG
>13.59|2763199|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR
ATCTGCAATTCAGCAGCGGATTCAGCAGATTGA
>13.60|2763265|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR
TGTCAAAGATGGAGTAACCAATCTAGATAATAT
>13.61|2763331|35|NC_015977|CRISPRCasFinder,CRT,PILER-CR
TTGTCCAAACGTCCATTATAAAATGCACACGACAG
>13.62|2763399|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR
GACGAACCGAACGGCGAATCGACGTTAAGTTTT
>13.63|2763465|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR
ATCGAAGCGGCGGCACAAGCTAGGCATATAGCG
>13.64|2763531|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR
GAAGAAAGCGTTAAAAGCCACATGAATTCCTAT
>13.65|2763597|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR
CTCAACCTTTGCTTCCATATCAATCATCTGCAT
>13.66|2763663|36|NC_015977|CRISPRCasFinder,CRT,PILER-CR
GTGTTTCCTGTTCATTAGCTTTCAATGGAATCAGGG
>13.67|2763732|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR
TCCGTCTTGATGTGCTCGTCGACCCTGCTCGCAG
>13.68|2763799|35|NC_015977|CRISPRCasFinder,CRT,PILER-CR
TCACAGGAGCTAAACGTTTAGGTCACTTTATAACA
>13.69|2763867|35|NC_015977|CRISPRCasFinder,CRT,PILER-CR
CTCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
>13.70|2763935|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR
ATTGCTGCGTTGGAATCCGTCATCATCATTTTTT
>13.71|2764002|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR
AGCTGCGCGAGGAGTACAAGGATTATGGTTATGC
>13.72|2764069|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR
CATCATGGTAAGAGTCATCAAAAAAAGAGTGAGC
>13.73|2764136|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR
GCCAGACAAGAAAAACATGGAAAAATGGCTTGAT
>13.74|2764203|35|NC_015977|CRISPRCasFinder,CRT,PILER-CR
GAAGCATAGGGGGGGCGGTTTTATGGATATTATGA
>13.75|2764271|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR
GAATATTGGCGATAAGATTGTCTCTATTATCAAT
>13.76|2764338|36|NC_015977|CRISPRCasFinder,CRT,PILER-CR
GCATACTTTGCGTCCGTCTGTGCCAGCTCTACATCT
>13.77|2764407|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR
GTATAATATGTATAAAAGAGATTACCATCCAGAC
>13.78|2764474|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR
CCGTACATGCCATTCTTACGCCGTGCAATGCCGT
>13.79|2764541|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR
TCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
>13.80|2764608|35|NC_015977|CRISPRCasFinder,CRT,PILER-CR
TCGCTGTGGAGTGAGCACCTGTGTGCCGGTATAGC
>13.81|2764676|35|NC_015977|CRISPRCasFinder,CRT,PILER-CR
TCGATCAAGTATGTATCTTGCCACTTAAGACCAGG
>13.82|2764744|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR
ATGAACACAAGTCCAATAGCGGCGCCCGTAGTA
>13.83|2759433|34|NC_015977|PILER-CR
AAAACCAAACAATACAACGAGAGATCGTTGTAAA
>13.84|2759500|33|NC_015977|PILER-CR
CCAGAATATCGGTGATCGTGGTTGCTTCTTCCA
>13.85|2759566|33|NC_015977|PILER-CR
TAATAAAAACGCAAATGGGTCATACTGATATTA
>13.86|2759632|34|NC_015977|PILER-CR
TTTTCTTGTTGATACTATCATATCACTTTAAAAA
>13.87|2759699|36|NC_015977|PILER-CR
ACCGTGAAATCCATGTTCTGCTCCACATATCCAATG
>13.88|2759768|33|NC_015977|PILER-CR
AGTTGCGACCGTGGAGTCCGGGAACACTACAAA
>13.89|2759834|33|NC_015977|PILER-CR
AAATAATGACTTGCCCTCTTTCATGTAATTCGT
>13.90|2759900|34|NC_015977|PILER-CR
GCCACAGTTATCTCCTGTCCCGGCAGCCACTGCG
>13.91|2759967|33|NC_015977|PILER-CR
GTAGCTCCGCTGTTTTTATAATTGTAGCAAGGG
>13.92|2760033|36|NC_015977|PILER-CR
ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT
>13.93|2760102|36|NC_015977|PILER-CR
ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT
>13.94|2760171|35|NC_015977|PILER-CR
ACAAAGATGCTTCTTTTTGGTGTATATCCGATCAA
>13.95|2760239|35|NC_015977|PILER-CR
GCGCGTGCGATGGAAACTTTGAAGTACAGGTCGAC
>13.96|2760307|34|NC_015977|PILER-CR
CGATCTGCAATGCAGTGTATTTTTTCAATTCAAA
>13.97|2760374|35|NC_015977|PILER-CR
TGATTTTTGTGGCGGGAATTTTAAAAAATCCTTCA
>13.98|2760442|33|NC_015977|PILER-CR
AAATCATAGTGAAGTTAAATTTGTAAAAGATAT
>13.99|2760508|34|NC_015977|PILER-CR
AAAAGGGGTGGTGCTAATGATAATTAAATACATA
>13.100|2760575|33|NC_015977|PILER-CR
TTGGAAATAGTATACGCAAGTCAAATTGCAGAT
>13.101|2760641|35|NC_015977|PILER-CR
ATAGCTGCGCCACTTGATATTGCTTCGCCATGGCG
>13.102|2760709|34|NC_015977|PILER-CR
ATATATCCGCATAACCACTCTATATCTTCAAAAT
>13.103|2760776|36|NC_015977|PILER-CR
GCACCTTGCGGAACGGAAATTCACTACACAGTAGAT
>13.104|2760845|35|NC_015977|PILER-CR
GACAACGCCATTGACCTTGTATGCGACAAGAAAAT
>13.105|2760913|34|NC_015977|PILER-CR
TGTTGCAAACATGAGAAACGGCATGGGAGTATAT
>13.106|2760980|33|NC_015977|PILER-CR
AACAGCTTCGGAGCTCCCCAAACTTGGAAACGG
>13.107|2761046|33|NC_015977|PILER-CR
TTATGACGCGGGAAACTATGGACGGTTAAATGC
>13.108|2761112|35|NC_015977|PILER-CR
ACGCCGTGCTGTCGGCATCTGACATGGAGTATTTT
>13.109|2761180|35|NC_015977|PILER-CR
ATCCTTTACAAACATAAATTCATAACCTAAATTAT
>13.110|2761248|33|NC_015977|PILER-CR
ATTGGATTACACCTAAAAGCATCAATCAATGAG
>13.111|2761314|36|NC_015977|PILER-CR
ATATACGGTCTCGCAGCGGAAAACGCAGAAGAGGGA
>13.112|2761383|35|NC_015977|PILER-CR
CACAAGCGACGGTAACAACACATCACAAGCAGATC
>13.113|2761451|35|NC_015977|PILER-CR
CAGTAGTCATTGATCTGATTTCTTACGTTTGCCAT
>13.114|2761519|35|NC_015977|PILER-CR
GTGTGAAGAACAAGGTAACAGATGCCGGATGGTCA
>13.115|2761587|34|NC_015977|PILER-CR
CGATTAAACTTATATTTCACAAACACTTTCGACA
>13.116|2761654|33|NC_015977|PILER-CR
TGTGACTCGTCTTGATCTTGCTATTGACAATGT
>13.117|2761720|35|NC_015977|PILER-CR
ACAGCTCCTGGGTGGTACTTGATGCAAACTGGGGC
>13.118|2761788|35|NC_015977|PILER-CR
ATCGTGACTGCGTGTATGTGCAGACCAAGACGGGC
>13.119|2761856|34|NC_015977|PILER-CR
TGATAACGCCTAGACTTACACCGTAGGCGCGCAA
>13.120|2761923|33|NC_015977|PILER-CR
TTCTTTGGTGAATTGTATCGGATAGGTGCATCA
>13.121|2761989|35|NC_015977|PILER-CR
TTGGACTCACGGAAAAACACCGCAAACATCTGAAA
>13.122|2762057|34|NC_015977|PILER-CR
GGGCATCGGGCAATGGATGATGCATGGAGCCATA
>13.123|2762124|34|NC_015977|PILER-CR
GATGGCGTACTGGCTGTCAGAACTTGCGCTTAGT
>13.124|2762191|36|NC_015977|PILER-CR
GGCGTTAGGGTCTGGCGTGCTCCGTGGCGATGAGTT
>13.125|2762260|33|NC_015977|PILER-CR
CATATAAGACGCCCTGGAATTCTGCGCCGACAG
>13.126|2762326|36|NC_015977|PILER-CR
GACATGGCTATTCTGAAGAACTGCGGCATCTCCAAG
>13.127|2762395|34|NC_015977|PILER-CR
CGGACAGATGGGCGGTAAGATGCTCGGAGGCGGA
>13.128|2762462|34|NC_015977|PILER-CR
GGAGATCGCACAGGCAATAGCTGACGGAAACCTT
>13.129|2762529|35|NC_015977|PILER-CR
CGATCAGACAAACGTGACGATCTCCGTCGATCTCG
>13.130|2762597|35|NC_015977|PILER-CR
AAAACAAACTCATGTTACGGTCGATTATGTACATG
>13.131|2762665|34|NC_015977|PILER-CR
AAACGGGCGTAGCTTGTCACGTATGACGCTATTT
>13.132|2762732|36|NC_015977|PILER-CR
TTTTGCGGCGGCAAACTGGGATGAATACCTCTGCAT
>13.133|2762801|33|NC_015977|PILER-CR
TGTCAAAGACGGAGTAACCAACTTGGACAACAT
>13.134|2762867|36|NC_015977|PILER-CR
CAGACACGGTAAATCTTGCCAGCACCTATAACTTCT
>13.135|2762936|33|NC_015977|PILER-CR
GGCGTTTGGAGTTATCAAAGAGATAATTCAATC
>13.136|2763002|34|NC_015977|PILER-CR
GACAACGCCACAGGATAACGACGAGGAGCAGGTT

CRISPR arrays and Neighbor proteins around NC_015977_13

CRISPR arrays

The CRISPR arrays of NC_015977_13

>merge|NC_015977|13|2759265-2764809|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
ATTTCAACCCACACTCCCCTCTCTGGGAATAACTCCACTCTCACGCCTGTCTCCAAGCTGAGATCAACCTTCCAATCCACACTTTCCTCGCTGCGAGCGATCCAGAACGGGCAACAACATCAGCCATCTGACTACTTCAATCCTCGCTCCCCTCACAGGGAGCGACAAAACCAAACAATACAACGAGAGATCGTTGTAAAATTTCAATCCTCGCTCCCCTCACAGGGAGCGACCCAGAATATCGGTGATCGTGGTTGCTTCTTCCAATTTCAATCCACGCTCCCCTCACAGGGAGCGACTAATAAAAACGCAAATGGGTCATACTGATATTAATTTCAATCCACACTCCCCTCACAGGGAGCGACTTTTCTTGTTGATACTATCATATCACTTTAAAAAATTTCAATCCTCGCTCCCCTCACAGGGAGCGACACCGTGAAATCCATGTTCTGCTCCACATATCCAATGATTTCAATCCTCGCTCCCCTCACAGGGAGCGACAGTTGCGACCGTGGAGTCCGGGAACACTACAAAATTTCAATCCTCGCTCCCCTCACAGGGAGCGACAAATAATGACTTGCCCTCTTTCATGTAATTCGTATTTCAATCCTCGCTCCCCTCACAGGGAGCGACGCCACAGTTATCTCCTGTCCCGGCAGCCACTGCGATTTCAATCCACGCTCCCCTCACAGGGAGCGACGTAGCTCCGCTGTTTTTATAATTGTAGCAAGGGATTTCAATCCACGCTCCCCTCACAGGGAGCGACACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGATATTTCAATCCACGCTCCCCTCACAGGGAGCGACACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGATATTTCAATCCACGCTCCCCTCACAGGAAGCGACACAAAGATGCTTCTTTTTGGTGTATATCCGATCAAATTTCAATCCACGCTCCCCTCACAGGGAGCGACGCGCGTGCGATGGAAACTTTGAAGTACAGGTCGACATTTCAATCCACGCTCCCCTCACAGGGAGCGACCGATCTGCAATGCAGTGTATTTTTTCAATTCAAAATTTCAATCCACGCTCCCCTCACAGGGAGCGACTGATTTTTGTGGCGGGAATTTTAAAAAATCCTTCAATTTCAATCCACGCTCCCCTCACAGGGAGCGACAAATCATAGTGAAGTTAAATTTGTAAAAGATATATTTCAATCCACGCTCCCCTCACAGGGAGCGACAAAAGGGGTGGTGCTAATGATAATTAAATACATAATTTCAATCCACGCTCCCCTCACAGGGAGCGACTTGGAAATAGTATACGCAAGTCAAATTGCAGATATTTCAATCCACGCTCCCCTCACAGGGAGCGACATAGCTGCGCCACTTGATATTGCTTCGCCATGGCGATTTCAATCCACGCTCCCCTCACAGGGAGCGACATATATCCGCATAACCACTCTATATCTTCAAAATATTTCAATCCACGCTCCCCTCACAGGGAGCGACGCACCTTGCGGAACGGAAATTCACTACACAGTAGATATTTCAATCCACGCTCCCCTCACAGGGAGCGACGACAACGCCATTGACCTTGTATGCGACAAGAAAATATTTCAATCCACGCTCCCCTCACAGGGAGCGACTGTTGCAAACATGAGAAACGGCATGGGAGTATATATTTCAATCCACGCTCCCCTCACAGGGAGCGACAACAGCTTCGGAGCTCCCCAAACTTGGAAACGGATTTCAATCCACGCTCCCCTCACAGGGAGCGACTTATGACGCGGGAAACTATGGACGGTTAAATGCATTTCAATCCACGCCCCCCTCACAGGGAGCGACACGCCGTGCTGTCGGCATCTGACATGGAGTATTTTATTTCAATCCACGCTCCCCTCACAGGGAGCGACATCCTTTACAAACATAAATTCATAACCTAAATTATATTTCAATCCACGCTCCCCTCACAGGGAGCGACATTGGATTACACCTAAAAGCATCAATCAATGAGATTTCAATCCACGCTCCCCTCACAGGGAGCGACATATACGGTCTCGCAGCGGAAAACGCAGAAGAGGGAATTTCAATCCACGCTCCCCTCACAGGGAGCGACCACAAGCGACGGTAACAACACATCACAAGCAGATCATTTCAATCCACGCTCCCCTCACAGGGAGCGACCAGTAGTCATTGATCTGATTTCTTACGTTTGCCATATTTCAATCCACGCTCCCCTCACAGGGAGCGACGTGTGAAGAACAAGGTAACAGATGCCGGATGGTCAATTTCAATCCACGCTCCCCTCACAGGGAGCGACCGATTAAACTTATATTTCACAAACACTTTCGACAATTTCAATCCACGCTCCCCTCACAGGGAGCGACTGTGACTCGTCTTGATCTTGCTATTGACAATGTATTTCAATCCACGCTCCCCTCACAGGGAGCGACACAGCTCCTGGGTGGTACTTGATGCAAACTGGGGCATTTCAATCCACGCTCCCCTCACAGGGAGCGACATCGTGACTGCGTGTATGTGCAGACCAAGACGGGCATTTCAATCCACGCTCCCCTCACAGGGAGCGACTGATAACGCCTAGACTTACACCGTAGGCGCGCAAATTTCAATCCACGCTCCCCTCACAGGGAGCGACTTCTTTGGTGAATTGTATCGGATAGGTGCATCAATTTCAATCCACGCTCCCCTCACAGGGAGCGACTTGGACTCACGGAAAAACACCGCAAACATCTGAAAATTTCAATCCACGCTCCCCTCACAGGGAGCGACGGGCATCGGGCAATGGATGATGCATGGAGCCATAATTTCAATCCACGCTCCCCTCACAGGGAGCGACGATGGCGTACTGGCTGTCAGAACTTGCGCTTAGTATTTCAATCCACGCTCCCCTCACAGGGAGCGACGGCGTTAGGGTCTGGCGTGCTCCGTGGCGATGAGTTATTTCAATCCACGCTCCCCTCACAGGGAGCGACCATATAAGACGCCCTGGAATTCTGCGCCGACAGATTTCAATCCACGCTCCCCTCACAGGGAGCGACGACATGGCTATTCTGAAGAACTGCGGCATCTCCAAGATTTCAATCCACGCTCCCCTCACAGGGAGCGACCGGACAGATGGGCGGTAAGATGCTCGGAGGCGGAATTTCAATCCACGCTCCCCTCACAGGGAGCGACGGAGATCGCACAGGCAATAGCTGACGGAAACCTTATTTCAATCCACGCTCCCCTCACAGGGAGCGACCGATCAGACAAACGTGACGATCTCCGTCGATCTCGATTTCAATCCACGCTCCCCTCACAGGGAGCGACAAAACAAACTCATGTTACGGTCGATTATGTACATGATTTCAATCCACGCTCCCCTCACAGGGAGCGACAAACGGGCGTAGCTTGTCACGTATGACGCTATTTATTTCAATCCACGCTCCCCTCACAGGGAGCGACTTTTGCGGCGGCAAACTGGGATGAATACCTCTGCATATTTCAATCCACGCTCCCCTCACAGGGAGCGACTGTCAAAGACGGAGTAACCAACTTGGACAACATATTTCAATCCACGCTCCCCTCACAGGGAGCGACCAGACACGGTAAATCTTGCCAGCACCTATAACTTCTATTTCAATCCACGCTCCCCTCACAGGGAGCGACGGCGTTTGGAGTTATCAAAGAGATAATTCAATCATTTCAATCCACGCTCCCCTCACAGGGAGCGACGACAACGCCACAGGATAACGACGAGGAGCAGGTTATTTCAATCCACGCTCCCCTCACAGGGAGCGACTCTTGCAAGCCGTCAAAATCGTCTGCAATAGACTATTTCAATCCACGCTCCCCTCACAGGGAGCGACCACAAGCCTGTCATCCTCAATGTCGGAATATGATTTCAATCCACGCTCCCCTCACAGGGAGCGACATCTGCAATTCAGCAGCGGATTCAGCAGATTGAATTTCAATCCACGCTCCCCTCACAGGGAGCGACTGTCAAAGATGGAGTAACCAATCTAGATAATATATTTCAATCCACGCTCCCCTCACAGGGAGCGACTTGTCCAAACGTCCATTATAAAATGCACACGACAGATTTCAATCCACGCTCCCCTCACAGGGAGCGACGACGAACCGAACGGCGAATCGACGTTAAGTTTTATTTCAATCCACGCTCCCCTCACAGGGAGCGACATCGAAGCGGCGGCACAAGCTAGGCATATAGCGATTTCAATCCACGCTCCCCTCACAGGGAGCGACGAAGAAAGCGTTAAAAGCCACATGAATTCCTATATTTCAATCCACGCTCCCCTCACAGGGAGCGACCTCAACCTTTGCTTCCATATCAATCATCTGCATATTTCAATCCACGCTCCCCTCACAGGGAGCGACGTGTTTCCTGTTCATTAGCTTTCAATGGAATCAGGGATTTCAATCCACGCTCCCCTCACAGGGAGCGACTCCGTCTTGATGTGCTCGTCGACCCTGCTCGCAGATTTCAATCCACGCTCCCCTCACAGGGAGCGACTCACAGGAGCTAAACGTTTAGGTCACTTTATAACAATTTCAATCCACGCTCCCCTCACAGGGAGCGACCTCTGCTCCATGATCTGCTCAACTAAAGCGTTAGCATTTCAATCCACGCTCCCCTCACAGGGAGCGACATTGCTGCGTTGGAATCCGTCATCATCATTTTTTATTTCAATCCACGCTCCCCTCACAGGGAGCGACAGCTGCGCGAGGAGTACAAGGATTATGGTTATGCATTTCAATCCACGCTCCCCTCACAGGGAGCGACCATCATGGTAAGAGTCATCAAAAAAAGAGTGAGCATTTCAATCCACGCTCCCCTCACAGGGAGCGACGCCAGACAAGAAAAACATGGAAAAATGGCTTGATATTTCAATCCACGCTCCCCTCACAGGGAGCGACGAAGCATAGGGGGGGCGGTTTTATGGATATTATGAATTTCAATCCACGCTCCCCTCACAGGGAGCGACGAATATTGGCGATAAGATTGTCTCTATTATCAATATTTCAATCCACGCTCCCCTCACAGGGAGCGACGCATACTTTGCGTCCGTCTGTGCCAGCTCTACATCTATTTCAATCCACGCTCCCCTCACAGGGAGCGACGTATAATATGTATAAAAGAGATTACCATCCAGACATTTCAATCCACGCTCCCCTCACAGGGAGCGACCCGTACATGCCATTCTTACGCCGTGCAATGCCGTATTTCAATCCACGCTCCCCTCACAGGGAGCGACTCTGCTCCATGATCTGCTCAACTAAAGCGTTAGCATTTCAATCCACGCTCCCCTCACAGGGAGCGACTCGCTGTGGAGTGAGCACCTGTGTGCCGGTATAGCATTTCAATCCACGCTCCCCTCACAGGGAGCGACTCGATCAAGTATGTATCTTGCCACTTAAGACCAGGATTTCAATCCACGCTCCCCTCACAGGGAGCGACATGAACACAAGTCCAATAGCGGCGCCCGTAGTAATTTCAATCCACGCTCCCCTCACAGGGAGCGAC

>NC_015977|13|13|2759265-2764809|CRISPRCasFinder
ATTTCAACCCACACTCCCCTCTCTGGGAATAAC	TCCACTCTCACGCCTGTCTCCAAGCTGAGATCAAC
CTTCCAATCCACACTTTCCTCGCTGCGAGCGAT	CCAGAACGGGCAACAACATCAGCCATCTGACT
ACTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	AAAACCAAACAATACAACGAGAGATCGTTGTAAA
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	CCAGAATATCGGTGATCGTGGTTGCTTCTTCCA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TAATAAAAACGCAAATGGGTCATACTGATATTA
ATTTCAATCCACACTCCCCTCACAGGGAGCGAC	TTTTCTTGTTGATACTATCATATCACTTTAAAAA
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	ACCGTGAAATCCATGTTCTGCTCCACATATCCAATG
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	AGTTGCGACCGTGGAGTCCGGGAACACTACAAA
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	AAATAATGACTTGCCCTCTTTCATGTAATTCGT
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	GCCACAGTTATCTCCTGTCCCGGCAGCCACTGCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTAGCTCCGCTGTTTTTATAATTGTAGCAAGGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT
ATTTCAATCCACGCTCCCCTCACAGGAAGCGAC	ACAAAGATGCTTCTTTTTGGTGTATATCCGATCAA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCGCGTGCGATGGAAACTTTGAAGTACAGGTCGAC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CGATCTGCAATGCAGTGTATTTTTTCAATTCAAA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGATTTTTGTGGCGGGAATTTTAAAAAATCCTTCA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AAATCATAGTGAAGTTAAATTTGTAAAAGATAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AAAAGGGGTGGTGCTAATGATAATTAAATACATA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTGGAAATAGTATACGCAAGTCAAATTGCAGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATAGCTGCGCCACTTGATATTGCTTCGCCATGGCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATATATCCGCATAACCACTCTATATCTTCAAAAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCACCTTGCGGAACGGAAATTCACTACACAGTAGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACAACGCCATTGACCTTGTATGCGACAAGAAAAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTTGCAAACATGAGAAACGGCATGGGAGTATAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AACAGCTTCGGAGCTCCCCAAACTTGGAAACGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTATGACGCGGGAAACTATGGACGGTTAAATGC
ATTTCAATCCACGCCCCCCTCACAGGGAGCGAC	ACGCCGTGCTGTCGGCATCTGACATGGAGTATTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCCTTTACAAACATAAATTCATAACCTAAATTAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATTGGATTACACCTAAAAGCATCAATCAATGAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATATACGGTCTCGCAGCGGAAAACGCAGAAGAGGGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CACAAGCGACGGTAACAACACATCACAAGCAGATC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CAGTAGTCATTGATCTGATTTCTTACGTTTGCCAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTGTGAAGAACAAGGTAACAGATGCCGGATGGTCA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CGATTAAACTTATATTTCACAAACACTTTCGACA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTGACTCGTCTTGATCTTGCTATTGACAATGT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ACAGCTCCTGGGTGGTACTTGATGCAAACTGGGGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCGTGACTGCGTGTATGTGCAGACCAAGACGGGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGATAACGCCTAGACTTACACCGTAGGCGCGCAA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTCTTTGGTGAATTGTATCGGATAGGTGCATCA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTGGACTCACGGAAAAACACCGCAAACATCTGAAA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GGGCATCGGGCAATGGATGATGCATGGAGCCATA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GATGGCGTACTGGCTGTCAGAACTTGCGCTTAGT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GGCGTTAGGGTCTGGCGTGCTCCGTGGCGATGAGTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CATATAAGACGCCCTGGAATTCTGCGCCGACAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACATGGCTATTCTGAAGAACTGCGGCATCTCCAAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CGGACAGATGGGCGGTAAGATGCTCGGAGGCGGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GGAGATCGCACAGGCAATAGCTGACGGAAACCTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CGATCAGACAAACGTGACGATCTCCGTCGATCTCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AAAACAAACTCATGTTACGGTCGATTATGTACATG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AAACGGGCGTAGCTTGTCACGTATGACGCTATTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTTTGCGGCGGCAAACTGGGATGAATACCTCTGCAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTCAAAGACGGAGTAACCAACTTGGACAACAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CAGACACGGTAAATCTTGCCAGCACCTATAACTTCT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GGCGTTTGGAGTTATCAAAGAGATAATTCAATC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACAACGCCACAGGATAACGACGAGGAGCAGGTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCTTGCAAGCCGTCAAAATCGTCTGCAATAGACT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CACAAGCCTGTCATCCTCAATGTCGGAATATG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCTGCAATTCAGCAGCGGATTCAGCAGATTGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTCAAAGATGGAGTAACCAATCTAGATAATAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTGTCCAAACGTCCATTATAAAATGCACACGACAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACGAACCGAACGGCGAATCGACGTTAAGTTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCGAAGCGGCGGCACAAGCTAGGCATATAGCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAAGAAAGCGTTAAAAGCCACATGAATTCCTAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CTCAACCTTTGCTTCCATATCAATCATCTGCAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTGTTTCCTGTTCATTAGCTTTCAATGGAATCAGGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCCGTCTTGATGTGCTCGTCGACCCTGCTCGCAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCACAGGAGCTAAACGTTTAGGTCACTTTATAACA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CTCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATTGCTGCGTTGGAATCCGTCATCATCATTTTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AGCTGCGCGAGGAGTACAAGGATTATGGTTATGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CATCATGGTAAGAGTCATCAAAAAAAGAGTGAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCCAGACAAGAAAAACATGGAAAAATGGCTTGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAAGCATAGGGGGGGCGGTTTTATGGATATTATGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAATATTGGCGATAAGATTGTCTCTATTATCAAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCATACTTTGCGTCCGTCTGTGCCAGCTCTACATCT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTATAATATGTATAAAAGAGATTACCATCCAGAC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CCGTACATGCCATTCTTACGCCGTGCAATGCCGT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCGCTGTGGAGTGAGCACCTGTGTGCCGGTATAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCGATCAAGTATGTATCTTGCCACTTAAGACCAGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATGAACACAAGTCCAATAGCGGCGCCCGTAGTA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC

>NC_015977|13|1|2759398-2764809|CRT
ACTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	AAAACCAAACAATACAACGAGAGATCGTTGTAAA
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	CCAGAATATCGGTGATCGTGGTTGCTTCTTCCA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TAATAAAAACGCAAATGGGTCATACTGATATTA
ATTTCAATCCACACTCCCCTCACAGGGAGCGAC	TTTTCTTGTTGATACTATCATATCACTTTAAAAA
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	ACCGTGAAATCCATGTTCTGCTCCACATATCCAATG
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	AGTTGCGACCGTGGAGTCCGGGAACACTACAAA
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	AAATAATGACTTGCCCTCTTTCATGTAATTCGT
ATTTCAATCCTCGCTCCCCTCACAGGGAGCGAC	GCCACAGTTATCTCCTGTCCCGGCAGCCACTGCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTAGCTCCGCTGTTTTTATAATTGTAGCAAGGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ACACTATTCCCTTGGTGCTTTGCCTGTATCTGTGAT
ATTTCAATCCACGCTCCCCTCACAGGAAGCGAC	ACAAAGATGCTTCTTTTTGGTGTATATCCGATCAA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCGCGTGCGATGGAAACTTTGAAGTACAGGTCGAC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CGATCTGCAATGCAGTGTATTTTTTCAATTCAAA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGATTTTTGTGGCGGGAATTTTAAAAAATCCTTCA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AAATCATAGTGAAGTTAAATTTGTAAAAGATAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AAAAGGGGTGGTGCTAATGATAATTAAATACATA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTGGAAATAGTATACGCAAGTCAAATTGCAGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATAGCTGCGCCACTTGATATTGCTTCGCCATGGCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATATATCCGCATAACCACTCTATATCTTCAAAAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCACCTTGCGGAACGGAAATTCACTACACAGTAGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACAACGCCATTGACCTTGTATGCGACAAGAAAAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTTGCAAACATGAGAAACGGCATGGGAGTATAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AACAGCTTCGGAGCTCCCCAAACTTGGAAACGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTATGACGCGGGAAACTATGGACGGTTAAATGC
ATTTCAATCCACGCCCCCCTCACAGGGAGCGAC	ACGCCGTGCTGTCGGCATCTGACATGGAGTATTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCCTTTACAAACATAAATTCATAACCTAAATTAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATTGGATTACACCTAAAAGCATCAATCAATGAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATATACGGTCTCGCAGCGGAAAACGCAGAAGAGGGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CACAAGCGACGGTAACAACACATCACAAGCAGATC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CAGTAGTCATTGATCTGATTTCTTACGTTTGCCAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTGTGAAGAACAAGGTAACAGATGCCGGATGGTCA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CGATTAAACTTATATTTCACAAACACTTTCGACA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTGACTCGTCTTGATCTTGCTATTGACAATGT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ACAGCTCCTGGGTGGTACTTGATGCAAACTGGGGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCGTGACTGCGTGTATGTGCAGACCAAGACGGGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGATAACGCCTAGACTTACACCGTAGGCGCGCAA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTCTTTGGTGAATTGTATCGGATAGGTGCATCA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTGGACTCACGGAAAAACACCGCAAACATCTGAAA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GGGCATCGGGCAATGGATGATGCATGGAGCCATA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GATGGCGTACTGGCTGTCAGAACTTGCGCTTAGT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GGCGTTAGGGTCTGGCGTGCTCCGTGGCGATGAGTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CATATAAGACGCCCTGGAATTCTGCGCCGACAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACATGGCTATTCTGAAGAACTGCGGCATCTCCAAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CGGACAGATGGGCGGTAAGATGCTCGGAGGCGGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GGAGATCGCACAGGCAATAGCTGACGGAAACCTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CGATCAGACAAACGTGACGATCTCCGTCGATCTCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AAAACAAACTCATGTTACGGTCGATTATGTACATG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AAACGGGCGTAGCTTGTCACGTATGACGCTATTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTTTGCGGCGGCAAACTGGGATGAATACCTCTGCAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTCAAAGACGGAGTAACCAACTTGGACAACAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CAGACACGGTAAATCTTGCCAGCACCTATAACTTCT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GGCGTTTGGAGTTATCAAAGAGATAATTCAATC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACAACGCCACAGGATAACGACGAGGAGCAGGTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCTTGCAAGCCGTCAAAATCGTCTGCAATAGACT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CACAAGCCTGTCATCCTCAATGTCGGAATATG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCTGCAATTCAGCAGCGGATTCAGCAGATTGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTCAAAGATGGAGTAACCAATCTAGATAATAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTGTCCAAACGTCCATTATAAAATGCACACGACAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACGAACCGAACGGCGAATCGACGTTAAGTTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCGAAGCGGCGGCACAAGCTAGGCATATAGCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAAGAAAGCGTTAAAAGCCACATGAATTCCTAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CTCAACCTTTGCTTCCATATCAATCATCTGCAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTGTTTCCTGTTCATTAGCTTTCAATGGAATCAGGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCCGTCTTGATGTGCTCGTCGACCCTGCTCGCAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCACAGGAGCTAAACGTTTAGGTCACTTTATAACA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CTCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATTGCTGCGTTGGAATCCGTCATCATCATTTTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AGCTGCGCGAGGAGTACAAGGATTATGGTTATGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CATCATGGTAAGAGTCATCAAAAAAAGAGTGAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCCAGACAAGAAAAACATGGAAAAATGGCTTGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAAGCATAGGGGGGGCGGTTTTATGGATATTATGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAATATTGGCGATAAGATTGTCTCTATTATCAAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCATACTTTGCGTCCGTCTGTGCCAGCTCTACATCT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTATAATATGTATAAAAGAGATTACCATCCAGAC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CCGTACATGCCATTCTTACGCCGTGCAATGCCGT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCGCTGTGGAGTGAGCACCTGTGTGCCGGTATAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCGATCAAGTATGTATCTTGCCACTTAAGACCAGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATGAACACAAGTCCAATAGCGGCGCCCGTAGTA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC

>NC_015977|13|1|2759400-2763066|PILER-CR
TTCAATCCTCGCTCCCCTCACAGGGAGCGACAA	AACCAAACAATACAACGAGAGATCGTTGTAAAAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACCC	AGAATATCGGTGATCGTGGTTGCTTCTTCCAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTA	ATAAAAACGCAAATGGGTCATACTGATATTAAT
TTCAATCCACACTCCCCTCACAGGGAGCGACTT	TTCTTGTTGATACTATCATATCACTTTAAAAAAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACAC	CGTGAAATCCATGTTCTGCTCCACATATCCAATGAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACAG	TTGCGACCGTGGAGTCCGGGAACACTACAAAAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACAA	ATAATGACTTGCCCTCTTTCATGTAATTCGTAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACGC	CACAGTTATCTCCTGTCCCGGCAGCCACTGCGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGT	AGCTCCGCTGTTTTTATAATTGTAGCAAGGGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAC	ACTATTCCCTTGGTGCTTTGCCTGTATCTGTGATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAC	ACTATTCCCTTGGTGCTTTGCCTGTATCTGTGATAT
TTCAATCCACGCTCCCCTCACAGGAAGCGACAC	AAAGATGCTTCTTTTTGGTGTATATCCGATCAAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGC	GCGTGCGATGGAAACTTTGAAGTACAGGTCGACAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCG	ATCTGCAATGCAGTGTATTTTTTCAATTCAAAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	ATTTTTGTGGCGGGAATTTTAAAAAATCCTTCAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	ATCATAGTGAAGTTAAATTTGTAAAAGATATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	AAGGGGTGGTGCTAATGATAATTAAATACATAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	GGAAATAGTATACGCAAGTCAAATTGCAGATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	AGCTGCGCCACTTGATATTGCTTCGCCATGGCGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	ATATCCGCATAACCACTCTATATCTTCAAAATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGC	ACCTTGCGGAACGGAAATTCACTACACAGTAGATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGA	CAACGCCATTGACCTTGTATGCGACAAGAAAATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	TTGCAAACATGAGAAACGGCATGGGAGTATATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	CAGCTTCGGAGCTCCCCAAACTTGGAAACGGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	ATGACGCGGGAAACTATGGACGGTTAAATGCAT
TTCAATCCACGCCCCCCTCACAGGGAGCGACAC	GCCGTGCTGTCGGCATCTGACATGGAGTATTTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	CCTTTACAAACATAAATTCATAACCTAAATTATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	TGGATTACACCTAAAAGCATCAATCAATGAGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	ATACGGTCTCGCAGCGGAAAACGCAGAAGAGGGAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCA	CAAGCGACGGTAACAACACATCACAAGCAGATCAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCA	GTAGTCATTGATCTGATTTCTTACGTTTGCCATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGT	GTGAAGAACAAGGTAACAGATGCCGGATGGTCAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCG	ATTAAACTTATATTTCACAAACACTTTCGACAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	TGACTCGTCTTGATCTTGCTATTGACAATGTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAC	AGCTCCTGGGTGGTACTTGATGCAAACTGGGGCAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	CGTGACTGCGTGTATGTGCAGACCAAGACGGGCAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	ATAACGCCTAGACTTACACCGTAGGCGCGCAAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	CTTTGGTGAATTGTATCGGATAGGTGCATCAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	GGACTCACGGAAAAACACCGCAAACATCTGAAAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGG	GCATCGGGCAATGGATGATGCATGGAGCCATAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGA	TGGCGTACTGGCTGTCAGAACTTGCGCTTAGTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGG	CGTTAGGGTCTGGCGTGCTCCGTGGCGATGAGTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCA	TATAAGACGCCCTGGAATTCTGCGCCGACAGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGA	CATGGCTATTCTGAAGAACTGCGGCATCTCCAAGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCG	GACAGATGGGCGGTAAGATGCTCGGAGGCGGAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGG	AGATCGCACAGGCAATAGCTGACGGAAACCTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCG	ATCAGACAAACGTGACGATCTCCGTCGATCTCGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	AACAAACTCATGTTACGGTCGATTATGTACATGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	ACGGGCGTAGCTTGTCACGTATGACGCTATTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	TTGCGGCGGCAAACTGGGATGAATACCTCTGCATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	TCAAAGACGGAGTAACCAACTTGGACAACATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCA	GACACGGTAAATCTTGCCAGCACCTATAACTTCTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGG	CGTTTGGAGTTATCAAAGAGATAATTCAATCAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGA	CAACGCCACAGGATAACGACGAGGAGCAGGTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTCTTGCAAGCCGTCAAAATCGTCTGCAATAGACTATTTCAATCCACGCTCCCCTCACAGGGAGCGACCACAAGCCTGTCATCCTCAATGTCGGAATATGATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCTGCAATTCAGCAGCGGATTCAGCAGATTGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTCAAAGATGGAGTAACCAATCTAGATAATAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTGTCCAAACGTCCATTATAAAATGCACACGACAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACGAACCGAACGGCGAATCGACGTTAAGTTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCGAAGCGGCGGCACAAGCTAGGCATATAGCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAAGAAAGCGTTAAAAGCCACATGAATTCCTAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CTCAACCTTTGCTTCCATATCAATCATCTGCAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTGTTTCCTGTTCATTAGCTTTCAATGGAATCAGGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCCGTCTTGATGTGCTCGTCGACCCTGCTCGCAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCACAGGAGCTAAACGTTTAGGTCACTTTATAACA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CTCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATTGCTGCGTTGGAATCCGTCATCATCATTTTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AGCTGCGCGAGGAGTACAAGGATTATGGTTATGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CATCATGGTAAGAGTCATCAAAAAAAGAGTGAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCCAGACAAGAAAAACATGGAAAAATGGCTTGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAAGCATAGGGGGGGCGGTTTTATGGATATTATGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAATATTGGCGATAAGATTGTCTCTATTATCAAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCATACTTTGCGTCCGTCTGTGCCAGCTCTACATCT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTATAATATGTATAAAAGAGATTACCATCCAGAC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CCGTACATGCCATTCTTACGCCGTGCAATGCCGT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCGCTGTGGAGTGAGCACCTGTGTGCCGGTATAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCGATCAAGTATGTATCTTGCCACTTAAGACCAGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATGAACACAAGTCCAATAGCGGCGCCCGTAGTA


>NC_015977|13|2|2763166-2764809|PILER-CR
	AACCAAACAATACAACGAGAGATCGTTGTAAAAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACCC	AGAATATCGGTGATCGTGGTTGCTTCTTCCAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTA	ATAAAAACGCAAATGGGTCATACTGATATTAAT
TTCAATCCACACTCCCCTCACAGGGAGCGACTT	TTCTTGTTGATACTATCATATCACTTTAAAAAAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACAC	CGTGAAATCCATGTTCTGCTCCACATATCCAATGAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACAG	TTGCGACCGTGGAGTCCGGGAACACTACAAAAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACAA	ATAATGACTTGCCCTCTTTCATGTAATTCGTAT
TTCAATCCTCGCTCCCCTCACAGGGAGCGACGC	CACAGTTATCTCCTGTCCCGGCAGCCACTGCGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGT	AGCTCCGCTGTTTTTATAATTGTAGCAAGGGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAC	ACTATTCCCTTGGTGCTTTGCCTGTATCTGTGATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAC	ACTATTCCCTTGGTGCTTTGCCTGTATCTGTGATAT
TTCAATCCACGCTCCCCTCACAGGAAGCGACAC	AAAGATGCTTCTTTTTGGTGTATATCCGATCAAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGC	GCGTGCGATGGAAACTTTGAAGTACAGGTCGACAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCG	ATCTGCAATGCAGTGTATTTTTTCAATTCAAAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	ATTTTTGTGGCGGGAATTTTAAAAAATCCTTCAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	ATCATAGTGAAGTTAAATTTGTAAAAGATATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	AAGGGGTGGTGCTAATGATAATTAAATACATAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	GGAAATAGTATACGCAAGTCAAATTGCAGATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	AGCTGCGCCACTTGATATTGCTTCGCCATGGCGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	ATATCCGCATAACCACTCTATATCTTCAAAATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGC	ACCTTGCGGAACGGAAATTCACTACACAGTAGATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGA	CAACGCCATTGACCTTGTATGCGACAAGAAAATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	TTGCAAACATGAGAAACGGCATGGGAGTATATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	CAGCTTCGGAGCTCCCCAAACTTGGAAACGGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	ATGACGCGGGAAACTATGGACGGTTAAATGCAT
TTCAATCCACGCCCCCCTCACAGGGAGCGACAC	GCCGTGCTGTCGGCATCTGACATGGAGTATTTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	CCTTTACAAACATAAATTCATAACCTAAATTATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	TGGATTACACCTAAAAGCATCAATCAATGAGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	ATACGGTCTCGCAGCGGAAAACGCAGAAGAGGGAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCA	CAAGCGACGGTAACAACACATCACAAGCAGATCAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCA	GTAGTCATTGATCTGATTTCTTACGTTTGCCATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGT	GTGAAGAACAAGGTAACAGATGCCGGATGGTCAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCG	ATTAAACTTATATTTCACAAACACTTTCGACAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	TGACTCGTCTTGATCTTGCTATTGACAATGTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAC	AGCTCCTGGGTGGTACTTGATGCAAACTGGGGCAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAT	CGTGACTGCGTGTATGTGCAGACCAAGACGGGCAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	ATAACGCCTAGACTTACACCGTAGGCGCGCAAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	CTTTGGTGAATTGTATCGGATAGGTGCATCAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	GGACTCACGGAAAAACACCGCAAACATCTGAAAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGG	GCATCGGGCAATGGATGATGCATGGAGCCATAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGA	TGGCGTACTGGCTGTCAGAACTTGCGCTTAGTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGG	CGTTAGGGTCTGGCGTGCTCCGTGGCGATGAGTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCA	TATAAGACGCCCTGGAATTCTGCGCCGACAGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGA	CATGGCTATTCTGAAGAACTGCGGCATCTCCAAGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCG	GACAGATGGGCGGTAAGATGCTCGGAGGCGGAAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGG	AGATCGCACAGGCAATAGCTGACGGAAACCTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCG	ATCAGACAAACGTGACGATCTCCGTCGATCTCGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	AACAAACTCATGTTACGGTCGATTATGTACATGAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACAA	ACGGGCGTAGCTTGTCACGTATGACGCTATTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTT	TTGCGGCGGCAAACTGGGATGAATACCTCTGCATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTG	TCAAAGACGGAGTAACCAACTTGGACAACATAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACCA	GACACGGTAAATCTTGCCAGCACCTATAACTTCTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGG	CGTTTGGAGTTATCAAAGAGATAATTCAATCAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACGA	CAACGCCACAGGATAACGACGAGGAGCAGGTTAT
TTCAATCCACGCTCCCCTCACAGGGAGCGACTCTTGCAAGCCGTCAAAATCGTCTGCAATAGACTATTTCAATCCACGCTCCCCTCACAGGGAGCGACCACAAGCCTGTCATCCTCAATGTCGGAATATGATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCTGCAATTCAGCAGCGGATTCAGCAGATTGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TGTCAAAGATGGAGTAACCAATCTAGATAATAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TTGTCCAAACGTCCATTATAAAATGCACACGACAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GACGAACCGAACGGCGAATCGACGTTAAGTTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATCGAAGCGGCGGCACAAGCTAGGCATATAGCG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAAGAAAGCGTTAAAAGCCACATGAATTCCTAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CTCAACCTTTGCTTCCATATCAATCATCTGCAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTGTTTCCTGTTCATTAGCTTTCAATGGAATCAGGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCCGTCTTGATGTGCTCGTCGACCCTGCTCGCAG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCACAGGAGCTAAACGTTTAGGTCACTTTATAACA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CTCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATTGCTGCGTTGGAATCCGTCATCATCATTTTTT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	AGCTGCGCGAGGAGTACAAGGATTATGGTTATGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CATCATGGTAAGAGTCATCAAAAAAAGAGTGAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCCAGACAAGAAAAACATGGAAAAATGGCTTGAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAAGCATAGGGGGGGCGGTTTTATGGATATTATGA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GAATATTGGCGATAAGATTGTCTCTATTATCAAT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GCATACTTTGCGTCCGTCTGTGCCAGCTCTACATCT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	GTATAATATGTATAAAAGAGATTACCATCCAGAC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	CCGTACATGCCATTCTTACGCCGTGCAATGCCGT
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCTGCTCCATGATCTGCTCAACTAAAGCGTTAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCGCTGTGGAGTGAGCACCTGTGTGCCGGTATAGC
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	TCGATCAAGTATGTATCTTGCCACTTAAGACCAGG
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC	ATGAACACAAGTCCAATAGCGGCGCCCGTAGTA
ATTTCAATCCACGCTCCCCTCACAGGGAGCGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015977.1|WP_014080641.1|2748411_2749428_-|L,D-transpeptidase	unknown	unknown	gnl|CDD|341130
NC_015977.1|WP_014080646.1|2753606_2754299_-|LrgB-family-protein	unknown	unknown	gnl|CDD|377236
NC_015977.1|WP_014080647.1|2754303_2754657_-|CidA/LrgA-family-protein	unknown	unknown	gnl|CDD|377131
NC_015977.1|WP_014080656.1|2766346_2767012_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|273040
NC_015977.1|WP_014080648.1|2754765_2756739_-|response-regulator	unknown	unknown	gnl|CDD|274362
NC_015977.1|WP_014080645.1|2752630_2753512_-|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|212030
NC_015977.1|WP_014080657.1|2767041_2767929_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NC_015977.1|WP_044025030.1|2769678_2770314_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl|CDD|187534
NC_015977.1|WP_014080658.1|2767930_2769682_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl|CDD|378245
NC_015977.1|WP_014080643.1|2750890_2751688_-|metallophosphoesterase-family-protein	unknown	unknown	gnl|CDD|277343
NC_015977.1|WP_014080644.1|2751692_2752631_-|DUF4474-domain-containing-protein	unknown	unknown	gnl|CDD|379685
NC_015977.1|WP_014080649.1|2756771_2757431_-|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl|CDD|308985
NC_015977.1|WP_014080660.1|2770540_2772766_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|350688
NC_015977.1|WP_014080650.1|2757582_2758779_-|cation:proton-antiporter	unknown	unknown	gnl|CDD|223551
NC_015977.1|WP_014080663.1|2776998_2778156_-|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl|CDD|223497
NC_015977.1|WP_014080661.1|2773232_2774045_-|glutamate-racemase	unknown	unknown	gnl|CDD|234851
NC_015977.1|WP_014080642.1|2749437_2750757_-|aspartate-kinase	unknown	unknown	gnl|CDD|236364
NC_015977.1|WP_014080662.1|2774047_2777002_-|AAA-family-ATPase	unknown	unknown	gnl|CDD|223496
NC_015977.1|WP_014080654.1|2764994_2765285_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_015977.1|WP_014080655.1|2765321_2766350_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015977.1|WP_014080657.1|2767041_2767929_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	1.4e-106	350.5	0.0
NC_015977.1|WP_014080658.1|2767930_2769682_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	2.5e-144	476.6	0.0
NC_015977.1|WP_014080656.1|2766346_2767012_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	6.8e-39	128.3	0.4
NC_015977.1|WP_014080660.1|2770540_2772766_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	6.9e-65	214.3	0.1
NC_015977.1|WP_014080654.1|2764994_2765285_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5.3e-29	95.0	3.2
NC_015977.1|WP_044025030.1|2769678_2770314_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	2.4e-78	257.3	0.0
NC_015977.1|WP_014080655.1|2765321_2766350_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	1e-145	479.8	0.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015977.1|WP_014080641.1|2748411_2749428_-|L,D-transpeptidase	gnl|CDD|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.56862e-19
NC_015977.1|WP_014080646.1|2753606_2754299_-|LrgB-family-protein	gnl|CDD|377236	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance.	1.59639e-95
NC_015977.1|WP_014080647.1|2754303_2754657_-|CidA/LrgA-family-protein	gnl|CDD|377131	pfam03788, LrgA, LrgA family. This family is uncharacterized. It contains the protein LrgA that has been hypothesized to export murein hydrolases.	8.03337e-30
NC_015977.1|WP_014080656.1|2766346_2767012_-|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.96754e-32
NC_015977.1|WP_014080648.1|2754765_2756739_-|response-regulator	gnl|CDD|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.58498e-67
NC_015977.1|WP_014080645.1|2752630_2753512_-|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	3.61775e-12
NC_015977.1|WP_014080657.1|2767041_2767929_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.56122e-151
NC_015977.1|WP_044025030.1|2769678_2770314_-|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.78533e-95
NC_015977.1|WP_014080658.1|2767930_2769682_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_015977.1|WP_014080643.1|2750890_2751688_-|metallophosphoesterase-family-protein	gnl|CDD|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	4.28401e-10
NC_015977.1|WP_014080644.1|2751692_2752631_-|DUF4474-domain-containing-protein	gnl|CDD|379685	pfam14751, DUF4474, Domain of unknown function (DUF4474). Domain found on N-termina of few families of uncharacterized Clostridia proteins. Typically followed by a proline-rich domain or other kinds of repeats.	5.93632e-130
NC_015977.1|WP_014080649.1|2756771_2757431_-|YkgJ-family-cysteine-cluster-protein	gnl|CDD|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	8.10914e-05
NC_015977.1|WP_014080660.1|2770540_2772766_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	7.55493e-56
NC_015977.1|WP_014080650.1|2757582_2758779_-|cation:proton-antiporter	gnl|CDD|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	2.0814e-52
NC_015977.1|WP_014080663.1|2776998_2778156_-|exonuclease-SbcCD-subunit-D	gnl|CDD|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	8.55611e-49
NC_015977.1|WP_014080661.1|2773232_2774045_-|glutamate-racemase	gnl|CDD|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	6.45495e-110
NC_015977.1|WP_014080642.1|2749437_2750757_-|aspartate-kinase	gnl|CDD|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
NC_015977.1|WP_014080662.1|2774047_2777002_-|AAA-family-ATPase	gnl|CDD|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	2.4181e-55
NC_015977.1|WP_014080654.1|2764994_2765285_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.58212e-30
NC_015977.1|WP_014080655.1|2765321_2766350_-|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	2.33716e-179

Protein sequences

>NC_015977.1|WP_014080650.1|2757582_2758779_-|cation:proton-antiporter
MESYSFLLFLAIIMISTKILGLFTRKIHMPAVVGALVAGVILGPSCLNLITLTGDTGVFLEQMAELGVILLMFNAGLETDLSELKKNGVASFVTALIGVIVPLIGGFLGYAFFFHTDFSDYDEVLKAVFVGVVLTATSVSITVETLREMGKLKGKVGTTILGAAVIDDIIGIIVLTIVTSLKDTSVSPITVVLKIVLYFVFIAVLIFVLTKLKVFVEEQDEKRRTAIICVALCFILSYISEEYFGIADITGAYFAGLMLCTMKVGPYVARRCEIPSYLIFSPVFFASVGLKVTLGGMDASIWIFAIILLVIAILSKVVGCGLGAKICGCTGKEAFQVGIGMISRGEVALIVAQKGYASGMLDDVLFAPIVLVVIVTTLITPILLKLVMKDNDSEKAAA
>NC_015977.1|WP_014080649.1|2756771_2757431_-|YkgJ-family-cysteine-cluster-protein
MLRDLQEISDGKIYGCNDMVRAACGDCAGCHACCEKMGTSIVLDPCDIWRLTTVTGKNFEQLLVDTIELQVVDGVILPNLRMDGEKEQCVFLNEQGRCRIHAMRPGLCRVFPLGRIYEESRIRYFLQMDACQKPGRSKVKVGKWLDTPQMERYERFLMDWHGLRKQLEKQVKDGIGEQEAKTINMFLLNLFFIKPYEPEQDFYEQYEERRAMAGQAGLK
>NC_015977.1|WP_014080648.1|2754765_2756739_-|response-regulator
MIIDRGLDQKGTDANIGTSRVNLTQRYVESVKYNGLGDFTEELREEADYRKRIEKIFSEIHMTGETYADLQPEALMEAYWQGEEMISRYYWAKRRDTDDIIWVRVDVRIVPQLDTGDLFAFYNNWDVTHEKNRDRMMQLIIEFDYDYVEYICLQNGHFEIMAQEKSSMCPSARGTDYDADIRDYLTRVAVTDQLEAHIRAMQTEEIRRNLEAEPLYIQEIDVRESDGSVRRKMIRYTYMDKQMGTVFKSCVDIEDIVTEEKKKQERLERAIEETERANCAKSEFLAHMSHDIRTPMNAIIGMTSVARQECQDETICGYLDKIKSSSEFLLGLINDMLDISRIESGNLNLKSEQMSRKTFGTAINTTIGPLMEQKNITFQCDLQHMEEMIYTDAVRFKQIFFNLLSNAAKYTPEGGNVWLLTERLRTEGNVEWVRFTVRDSGIGMSEEFLEHAFEPFSQEGNRTLALQWQGTGLGLAIVKKLVVMMHGTIEIHSKLGAGTGVILDLPLTISGIDAPEKMPQAVMAKQNLEGRRVLLAEDNEINTFVARRILESRGIIVEHAENGKRAVEMVEQNPEGYFDAIVMDIRMPVMSGLEAARQIRAMSRTDAQTVPIIAMTANAYEEDVSQSLAAGMNAHLAKPIEPQVILDTLAGYIGSKN
>NC_015977.1|WP_014080647.1|2754303_2754657_-|CidA/LrgA-family-protein
MKHLKQFLIILLFSFLGEGLKALLPLPVPASIYGLVLLFAALELGIIKLSAVEDAGKFLIEIMPVMFIPAGAGLVESWSALKPICVQVVVIMFVSTIVVMVISGRVTQFVIRRNRKA
>NC_015977.1|WP_014080646.1|2753606_2754299_-|LrgB-family-protein
MKEFLNQSVFFGVAISVLTYELGVFLKKKLKWPICNPLLISIVAVIVFLVAFDIPYESYNAGAKYLSYLLTPATVCLAIPLYEQVELLKKHSKAIVLGLISGVITSLVCVLVLALLFHFDHAQYVTLLPKSITTAIGMGISEELGGYVTITVAVIIITGVIGNMLAETVCRIFKIEEPVAKGIAIGASSHAVGTVKAMEIGEIEGAMSSLAIAVAGLLTVVLAPVFAGIM
>NC_015977.1|WP_014080645.1|2752630_2753512_-|LysM-peptidoglycan-binding-domain-containing-protein
MYCQNRMVHTVQEGDSLYRLARQYHTTVTELILGNPGVNPYNLQVGMKLYVCPGESYVPPQGGSANTGNTGNSGSTGNTGNAGNGGNTSNAGVGGNIGIGVVIPGGQRPGGNQTAGERQNSVNQLFETMRLAWLELIYWTRMYMMSVDSGADAKEQYAVEGRLLETADAITDVFAERLPVAVTRQLRNLLVEHVEMTGQIIRTLKSGDKENYEQQIREWYANANQIATLLADQNPYFAGKETRNLLLNYLDMTREIIEHQMNGEYDQSIDTFRDLSDLVLELADYLARGLLAR
>NC_015977.1|WP_014080644.1|2751692_2752631_-|DUF4474-domain-containing-protein
MCFANGRCLLCIAFLVLFAALLILAVVHRVRAKKKVLALTPGERVRLLNELAEPFGFAYLPSEDIFTSRLDAWQRDKGYEAKYDTMTVGAGMVIDAFPVYFNYEGRTWLVEFWKGQYGINTGGEVGIYHAKGVIPPHAYHTAHFEAVSDAELPRICSCLDTAEETFYEICARHWWLTGFRMGVYTKPSRLRLATTLIFPEQEMALAFWEGLHKTGKPRSLFRICGREVSVRMNFSEEHGLIPGICRSVVLLWNRLLCRGFRIVTYPWKRTADRMVFLYYLLPGWFRKILVLSGGRCKPRCRTRKPHRSCRGR
>NC_015977.1|WP_014080643.1|2750890_2751688_-|metallophosphoesterase-family-protein
MGCYRRIDRALEHALHLPLGTGSRYVVISDCHRGEGTTNDNFLKNAYLYEAAMEHYIKRGFFYLELGDGEELWENRCMDRIVHYHETVYEMFACLQSRNALCRIYGNHNMELRKILPEAIILDNCEGGRDVCMIHGHQADFFNSVCWRLSRALVRYVWKPLERSGVNDPTSAARNYKKAVRYEQCLAGWTRLHDRYLIAGHSHRPRLPENGELYLNAGSCVHPGCITAIELEQMQMTLVKWKVATRPDMTMYVVREKLAGPVAIL
>NC_015977.1|WP_014080642.1|2749437_2750757_-|aspartate-kinase
MIKVVKFGGSSLASAEQFAKVGKIIQADKERRYVVPSAPGKRNAKDTKVTDMLYACYALVEAEEDFRVPLMKIKDRYDTIINGLNLKLSLEEEFKKISENFKNKAGVDYAASRGEYLNGIIMANYLGYEFVDAAEVISFEEDGTFDAEKTNKVLAERLEKCERAVIPGFYGALPDGTIKTFSRGGSDITGSIVARAVHATCYENWTDVSGFLIADPRIIKDPQPIKTITYRELRELSYMGASVLHEDAVFPVRKAGIPINIRNTNAPDDEGTWIVESTCHQSKYTITGIAGKKGFVSVNIDKDMMNSEVGFGRKVLSAFEENNISFEHMPSGIDTMTIFVHQPEFEGKEQAVISAIHRLAKPDSIELEGDLALIAVVGRGMKSTRGTAGRIFSALAHANINVKMIDQGSSELNIIIGVSNADFEPAIRAIYDIFVETQL
>NC_015977.1|WP_014080641.1|2748411_2749428_-|L,D-transpeptidase
MKNNKHEQNELQRMMEGRAARMIAAAVTVFLCVLTLFEFVALKMEWNVPALAVLSGDNGLWTREYQREELVMDGSTENILLADDGETPLTGSGENAKTNVGENGSGGTAQTGENAGNGEDLQVEGTEAVRQEETETPDVSGTGKAEADVKETQTPEFSYYIRINRKQNCVTIYTQDEEGEYTVPYKAMVCSTGLYNATPRGTYQISTKYLWRELYGGVYGQYATRIHGGILFHSVPYYKRAKDTLCTDKYNKLGQQASMGCVRLTVEDAKWIAENCPEGTTVEIYDGEDPGPLGKPEAQKLDKSDPDCHWDPTDPDEENPWQQTETSVTESEQEKQIK
>NC_015977.1|WP_014080654.1|2764994_2765285_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTQTAAGVRRLARVAKICTNYGQRVQNSVFECIVDQTQYVMLKKQLKDIIDVDKDSVRYYVMGEKYKSKVEHIGVQRAFDVTAPLII
>NC_015977.1|WP_014080655.1|2765321_2766350_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTTPDVYLALDGENVVVKKEDRVAMRIPIHNVEAIVAFNYVGASPALMRKCNENNVNLSFFHNDSFCARMIGQENGNVVLRKIQYRLSEREGESLAIARNMILGKVHNERYVLERAIRDHALRLDTEKLKDASEQLKQYLRAVKDSGSSEELRGYEGKAASTYFSVFDELILQNKESFVFHGRNKRPPLDNVNAMLSFTYALLVNECAGAAYSVGLDPYVGFLHTDRPGRQSLALDLMEEFRAPVADRFVLTMINKQQINARGFRKMESGAVVMDDDTRRVLIQNWQELKSEEIMHPYLKEKVAVGLLPYVQAMLLARYLRGDINAYPPYFKR
>NC_015977.1|WP_014080656.1|2766346_2767012_-|CRISPR-associated-protein-Cas4
MEYQEEDYLLLSGIQHFVFCRRQWALIHIEQQWEENVRTFEGRVMHENAHNADFHEKRNGVIMVRAMKVFSREMGISGECDVVEFHPAPEGITLAGQKGTYIAVPVEYKRGKPKPHNADEMQLMAQAMCLEEMLMTRIPKGYLYYGETRRRTEVLFTEELRQSVRSCFEEMHAYYSRKYTPMVKTGTYCRQCSLNNICLPELSGAQPADAYVSEMLKEELQ
>NC_015977.1|WP_014080657.1|2767041_2767929_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MGEAIRNRYDFVVLFDVENGNPNGDPDAGNMPRIDPETGYGLVTDVCLKRKIRNYVETLKEDTTGYKIYIKDNVPLNRSDLGAFQSLGIDEKEIKNLKKTDPMLDVKVRDFMCQNFYDIRTFGAVMTTFVKANLNCGQVRGPVQMGFAKSVDPILPQEITITRVAITTEEDAAKKGTEMGRKYIVPYGLYRVEGYVSANLARKVTGFSEEDLELLWKAILNMFENDHAAARGKMAVRKLIIFKHDSELGNAPSYKLFEAVKVARKPGVDLARAFSDYEVTLPEQLPEGVTCTCME
>NC_015977.1|WP_014080658.1|2767930_2769682_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALVEHYEDLLKQGRIAKPGWGKVKVSYGLNLDRQGHVLGLIPLKVAQETGGSKKKTVFVARMMEVPHPEKRSVAVCPNFLCDNATYILGVDEKGKPERTSQCYEACMEKHMELLSDIHTPAAEAICHYFEYWSPDAARQCTDIEDNWSDLMAGVNLLFYYEGEAVTEDPAIREAWQQFYDRKDESGQTLCLVTGKKDKLAVLHPSIKGVRGAQAMGASLVSFNAASFCSYEKEQGANAPVGEYAAFAYTTALNELLNDRAHTGTIGDTTVVCWAEGGESLYQDVGMMAMFGLTDESGMTDGELRAIIGKVANGEPVQIEDIRLDPDRHFYVLGLAPNAARLTVRFFMRDSFGTMIRHVNEHQERLRIVNARQKEYPIIPIWKLMSETVNQNARDKSPSPQMAADTLKAVLTGGKYPASLLNAVMLRIRAEHRITRERAAMIKAYYLKNENKDCPKEVLQEMINEESKNVPYTLGRLFAVLEHLQQEANPGINTTIKDKYFNSAAATPAQIFPLLLNLAQKHLRKLANEGHKVYFNRQIGKLAEVIGESFPKRLNLPEQGAFQLGYYCQTQKRYTKKEEN
>NC_015977.1|WP_044025030.1|2769678_2770314_-|type-I-C-CRISPR-associated-protein-Cas5
MEVWGNFACFSRPEMKVERVSYDVMTPSAARGMLEAVYWHPGLQWHIDNIYVLAPIQMTNIRRNEVQSKVLGSSVRAAMTGGRTELYINTSKDIVQRASLVLQDVRYVIEAHFTLTEKAAAGDNPGKFQDIIKRRLRKGQCYHEPYFGCREFPANFKEWEGGEIPAIQETRDLGYMLWDLDFSDPANIRPLFFRAKMENGVIHVADCEVLR
>NC_015977.1|WP_014080660.1|2770540_2772766_-|CRISPR-associated-helicase/endonuclease-Cas3
MVEDKVTGKRMIAHINASGKIQTVKSHSEGTACLTQQFAEEFGCGKQGYFCGLLHDIGKYSEAFQRRIADPEHTAKVDHSTAGAVEAMKIAKENIPLAMTIAEHHSGLLNGGVYRISNKGDGTFFGRIKGAESLPDYAAWKRDIVPEDVNIPAFCRDGSNPCFTMSFFIRMMYSCLVDADYLDTEAFMKENQAVRGEYDSLKVLAERFDNHIKQWLEKTDFKSDKQKILCSIRNQVLQDCMSKGSELPPGIYTLTVPTGGGKTTASLGFALRHAIQSKMKRIIYVIPYTSIIDQNAEVFRSILGEKNVLEHHSGILYDLTEDKAENEAAYRKALATENWDMPVIVTTAVQFFESLYANRSSKCRKLHNMANSVIIFDEAQTMPIPYLEPCVAAIAELAAHYHSTIVLCTATQPVLDEMIQKYIPQTQVREICEHTDILFQKLRRTSIVAAGNMEREKLIDCLTAQEQVLCIVNSRNLAQELFEEIPREGAFCLTTLLYPEHRKEKLREIKERLEHHVPCRVIATSLVEAGVDLDFPCVYRQENGLDALIQAAGRCNREGTHSPEESKVYLFGLKGDASVYFAQNISALRQTLRCYEDPAAPEAIAFYFKQYREILGRENLDQKKIMDAFTAGKGINGDCFPFATVAREFHLIESETQTIYIPVGEAELWIEEMEKGKVSRELMRKLGQYAVNVYPNHLKALYDAGCVEGIGEGMYVLRDMNQYHEDTGLQMDVSTGYGLFG
>NC_015977.1|WP_014080661.1|2773232_2774045_-|glutamate-racemase
MEKYENRQECPIGVFDSGVGGISVLRELVAQMPNENYIFFGDSKNAPYGTKTLEEVQKLTCADAEYLLSRGVKALVVACNTATSAAIRILREKYADMPVIGIEPALKPAVHAGGHPRVLVMATPMTLREEKFHALMQRFESDAEILRLPCPGLVEYVEQGVLEGAELEAFLANLFEPYQSHPVDCVVLGCTHYPFVRETIQKLLGAGVQIFDGGAGTARETERRLKDCGLCSGRAQQGTVELCNSLASEQMKQLEIRLLQSGTVQAIIKK
>NC_015977.1|WP_014080662.1|2774047_2777002_-|AAA-family-ATPase
MKPEKLILSAFGSYAGRTEIDFTVQTGGLFLITGDTGAGKTTIFDAITYALYGEASGGGRSGAMMRSQYAKSVTETYVEFSFLYAGESYRVRRNPEYKIVKELKNGKLREQKVLAVVELTLPDGTVYPEKRSQTDAKIEELIGLTKEQFTQTAMIAQGDFLKLLYAKSDDRKKIFSKLFHTDAYWRIQENLKRRSLEMDRVLAENERAAEQERARVILPREELKELPLPEAVEQIGIWERELTASQETVREAIRRLTAEISKAKEVNELFEGLRDCEQQVQKLKEEEPVEARRKKQLEAAVRAERVHVKELRCNERLDERRQSDETVERMKSLIAEEKEAHGRQEQDFNTLKMQSADAAEADAEKMLRIREQLPVYERLGEAVEREQQAKQAYESAKQYYERAVREGASRLLAEKNRQLLLEEKYVSAAKAWERASARSTEASAEYEHVYQLFLKEQAGILAQNLREAEPCPVCGSLTHPHPASLAENAVSEAAVKAAKEQREQAETARDAAYQEFDGQKSAAAEQELRLEQAKQQFLALAGDTCGDREKELYTFAAQQAAEEPAAKKRSLTERGRQAERFSREGKKHPGETGEAVDRLKLESLKRDWEEDQRETARIRAELSFETKERAEEALQQLTDEADRRTKRLADAEETLQKKKEDISRQEGMLTQEQTKNAGLVQECLELEKEYRQALRDAGFSSEEAYHEAFLTESGRETLVQQSEAYVRNRVESEGRLLTMQKLTEGKQEIGILAWETELEAQKQRQQELHEEILAMHTAYETDAKVVERCREYFAAHERLDAENQVLKRLYCTADGRLAGSAKIDFETYVQRRYFRQVIYEANRRLLTMSGHQFMLKLKETENSGRKSNEGLDLSVYSLVTDSERDIRTLSGGESFLAALAMALGLSDIAIRKAGAVHLDMMFIDEGFGTLDAQSRKQAIEVLSQLAGSERLVGIISHVTELKEQIEHRLYVTRTENGSEAVWEE
>NC_015977.1|WP_014080663.1|2776998_2778156_-|exonuclease-SbcCD-subunit-D
MKLFHLSDLHIGKQLHHYNLAAEQRKTLAQIVALAKSEHPDAILIAGDIYDTPVPSAEAVSVFDAFLSALCEIEPQIAVMIIAGNHDSARRIDFASSILAKHEVYIAGLPPMQEGETIRRVTLADGYGEVDFYLLPFVKPGYVRKLFDEEIKGYDMAVRRLIEREEIDPARRCVILSHQFYTAGGKEPATCDSEIHYVGGVENVDAGVLAPFDYAALGHIHRAQHIGAEKYRYCGTPFPYSISEAGEEKSVTVVELGAKGQPPVIRQIPLTPVREVKKLTGTLHEILEQAGQEVCHAFVSITLTDDVEAFQPKERLEEKYDHILEIRIDNARTRKLLSDTEEQLAEVRPEEAFAMFFAEMNGREMTPEERELMRQVIAQEMEGDE

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015977_6	6.2|1044772|25|NC_015977|CRISPRCasFinder	1044772-1044796	25	NC_015977.1	1044796-1044820	2	0.92

1. spacer 6.2|1044772|25|NC_015977|CRISPRCasFinder matches to position: 1044796-1044820, mismatch: 2, identity: 0.92

ttccggaagcagcgcgggaagcagt	CRISPR spacer
ttccggaggcagcgcgggaagcggt	Protospacer
*******.**************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015977_13	13.16|2760305|34|NC_015977|CRISPRCasFinder,CRT	2760305-2760338	34	JQ680361	Unidentified phage clone 2019_scaffold132 genomic sequence	35495-35528	0	1.0
NC_015977_13	13.59|2763199|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2763199-2763231	33	JQ680364	Unidentified phage clone 2200_scaffold1335 genomic sequence	3036-3068	0	1.0
NC_015977_13	13.65|2763597|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2763597-2763629	33	JQ680364	Unidentified phage clone 2200_scaffold1335 genomic sequence	1212-1244	0	1.0
NC_015977_13	13.96|2760307|34|NC_015977|PILER-CR	2760307-2760340	34	JQ680361	Unidentified phage clone 2019_scaffold132 genomic sequence	35495-35528	0	1.0
NC_015977_13	13.40|2761921|33|NC_015977|CRISPRCasFinder,CRT	2761921-2761953	33	JQ680364	Unidentified phage clone 2200_scaffold1335 genomic sequence	18518-18550	1	0.97
NC_015977_13	13.58|2763134|32|NC_015977|CRISPRCasFinder,CRT	2763134-2763165	32	JQ680361	Unidentified phage clone 2019_scaffold132 genomic sequence	28248-28279	1	0.969
NC_015977_13	13.120|2761923|33|NC_015977|PILER-CR	2761923-2761955	33	JQ680364	Unidentified phage clone 2200_scaffold1335 genomic sequence	18518-18550	1	0.97
NC_015977_13	13.2|2759366|32|NC_015977|CRISPRCasFinder	2759366-2759397	32	JQ680364	Unidentified phage clone 2200_scaffold1335 genomic sequence	3514-3545	2	0.938
NC_015977_13	13.34|2761517|35|NC_015977|CRISPRCasFinder,CRT	2761517-2761551	35	JQ680364	Unidentified phage clone 2200_scaffold1335 genomic sequence	531-565	2	0.943
NC_015977_13	13.114|2761519|35|NC_015977|PILER-CR	2761519-2761553	35	JQ680364	Unidentified phage clone 2200_scaffold1335 genomic sequence	531-565	2	0.943
NC_015977_1	1.4|469298|30|NC_015977|CRISPRCasFinder	469298-469327	30	NZ_CP035002	Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence	794479-794508	6	0.8
NC_015977_7	7.1|1074842|28|NC_015977|CRISPRCasFinder	1074842-1074869	28	MN862333	Trichosanthes kirilowii gokushovirus strain pt111-gok-1, complete genome	297-324	6	0.786
NC_015977_1	1.1|469139|30|NC_015977|CRISPRCasFinder	469139-469168	30	NZ_LR134470	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 28, complete sequence	55028-55057	7	0.767
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NZ_CP054842	Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence	151825-151854	7	0.767
NC_015977_2	2.1|645183|27|NC_015977|CRISPRCasFinder	645183-645209	27	MH884508	Bacillus phage vB_BcoS-136, complete genome	56194-56220	7	0.741
NC_015977_13	13.72|2764069|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2764069-2764102	34	NZ_CP043519	Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_07, complete sequence	6120-6153	7	0.794
NC_015977_1	1.1|469139|30|NC_015977|CRISPRCasFinder	469139-469168	30	NZ_CP031116	Rubrobacter indicoceani strain SCSIO 08198 plasmid unnamed1, complete sequence	88683-88712	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	558164-558192	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	332332-332361	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NZ_CP032615	Pseudomonas sp. DY-1 plasmid p.1, complete sequence	11158-11187	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NZ_CP032615	Pseudomonas sp. DY-1 plasmid p.1, complete sequence	23930-23959	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	991088-991117	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NZ_CP046574	Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence	461349-461378	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NZ_CP046574	Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence	1-30	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NZ_CP009112	Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence	1-30	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NC_012521	Rhodococcus opacus B4 plasmid pROB02, complete sequence	1-29	8	0.733
NC_015977_1	1.3|469241|30|NC_015977|CRISPRCasFinder	469241-469270	30	NZ_CP046575	Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence	2-31	8	0.733
NC_015977_13	13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT	2760440-2760472	33	MN694178	Marine virus AFVG_250M81, complete genome	26605-26637	8	0.758
NC_015977_13	13.60|2763265|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2763265-2763297	33	MN364664	Xanthomonas phage Xoo-sp15, complete genome	35259-35291	8	0.758
NC_015977_13	13.79|2764541|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2764541-2764574	34	MN234233	Corynebacterium phage Colleen, complete genome	4692-4725	8	0.765
NC_015977_13	13.79|2764541|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2764541-2764574	34	MH271317	Corynebacterium phage TouchMeNot, complete genome	4492-4525	8	0.765
NC_015977_13	13.79|2764541|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2764541-2764574	34	MF197383	Corynebacterium phage Poushou, complete genome	4492-4525	8	0.765
NC_015977_13	13.98|2760442|33|NC_015977|PILER-CR	2760442-2760474	33	MN694178	Marine virus AFVG_250M81, complete genome	26605-26637	8	0.758
NC_015977_13	13.2|2759366|32|NC_015977|CRISPRCasFinder	2759366-2759397	32	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	975005-975036	9	0.719
NC_015977_13	13.2|2759366|32|NC_015977|CRISPRCasFinder	2759366-2759397	32	MT857002	Salmonella phage pSal-SNUABM-02, complete genome	91544-91575	9	0.719
NC_015977_13	13.4|2759498|33|NC_015977|CRISPRCasFinder,CRT	2759498-2759530	33	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	735097-735129	9	0.727
NC_015977_13	13.9|2759832|33|NC_015977|CRISPRCasFinder,CRT	2759832-2759864	33	NZ_CP028203	Bacillus subtilis strain SRCM102754 plasmid unnamed1, complete sequence	3095-3127	9	0.727
NC_015977_13	13.10|2759898|34|NC_015977|CRISPRCasFinder,CRT	2759898-2759931	34	MG271909	Synechococcus phage S-LBS1, complete genome	22547-22580	9	0.735
NC_015977_13	13.11|2759965|33|NC_015977|CRISPRCasFinder,CRT	2759965-2759997	33	MN693390	Marine virus AFVG_25M491, complete genome	39088-39120	9	0.727
NC_015977_13	13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT	2760440-2760472	33	NZ_CP013040	Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence	53705-53737	9	0.727
NC_015977_13	13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT	2760440-2760472	33	NC_019687	Clostridium perfringens plasmid pCpb2-CP1, complete sequence	42040-42072	9	0.727
NC_015977_13	13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT	2760440-2760472	33	NC_019257	Clostridium perfringens plasmid pJIR3844, complete sequence	40587-40619	9	0.727
NC_015977_13	13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT	2760440-2760472	33	NZ_CP025503	Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence	57096-57128	9	0.727
NC_015977_13	13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT	2760440-2760472	33	NZ_CP013041	Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence	46705-46737	9	0.727
NC_015977_13	13.79|2764541|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2764541-2764574	34	NZ_CP021139	Sulfuriferula sp. AH1 plasmid unnamed, complete sequence	20652-20685	9	0.735
NC_015977_13	13.84|2759500|33|NC_015977|PILER-CR	2759500-2759532	33	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	735097-735129	9	0.727
NC_015977_13	13.89|2759834|33|NC_015977|PILER-CR	2759834-2759866	33	NZ_CP028203	Bacillus subtilis strain SRCM102754 plasmid unnamed1, complete sequence	3095-3127	9	0.727
NC_015977_13	13.90|2759900|34|NC_015977|PILER-CR	2759900-2759933	34	MG271909	Synechococcus phage S-LBS1, complete genome	22547-22580	9	0.735
NC_015977_13	13.91|2759967|33|NC_015977|PILER-CR	2759967-2759999	33	MN693390	Marine virus AFVG_25M491, complete genome	39088-39120	9	0.727
NC_015977_13	13.98|2760442|33|NC_015977|PILER-CR	2760442-2760474	33	NZ_CP013040	Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence	53705-53737	9	0.727
NC_015977_13	13.98|2760442|33|NC_015977|PILER-CR	2760442-2760474	33	NC_019687	Clostridium perfringens plasmid pCpb2-CP1, complete sequence	42040-42072	9	0.727
NC_015977_13	13.98|2760442|33|NC_015977|PILER-CR	2760442-2760474	33	NC_019257	Clostridium perfringens plasmid pJIR3844, complete sequence	40587-40619	9	0.727
NC_015977_13	13.98|2760442|33|NC_015977|PILER-CR	2760442-2760474	33	NZ_CP025503	Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence	57096-57128	9	0.727
NC_015977_13	13.98|2760442|33|NC_015977|PILER-CR	2760442-2760474	33	NZ_CP013041	Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence	46705-46737	9	0.727
NC_015977_13	13.8|2759766|33|NC_015977|CRISPRCasFinder,CRT	2759766-2759798	33	JQ680352	Unidentified phage clone 1013_scaffold1713 genomic sequence	5664-5696	10	0.697
NC_015977_13	13.30|2761246|33|NC_015977|CRISPRCasFinder,CRT	2761246-2761278	33	MG592662	Vibrio phage 2.058.O._10N.286.46.B8, partial genome	25213-25245	10	0.697
NC_015977_13	13.30|2761246|33|NC_015977|CRISPRCasFinder,CRT	2761246-2761278	33	MG592672	Vibrio phage 3.058.O._10N.286.46.B8, partial genome	25151-25183	10	0.697
NC_015977_13	13.40|2761921|33|NC_015977|CRISPRCasFinder,CRT	2761921-2761953	33	MT774405	CrAssphage cr115_1, complete genome	86176-86208	10	0.697
NC_015977_13	13.43|2762122|34|NC_015977|CRISPRCasFinder,CRT	2762122-2762155	34	NZ_CP015204	Rhodococcus sp. 008 plasmid pR8C1, complete sequence	91473-91506	10	0.706
NC_015977_13	13.72|2764069|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2764069-2764102	34	NZ_CP009639	Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence	154872-154905	10	0.706
NC_015977_13	13.72|2764069|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2764069-2764102	34	NZ_CP053963	Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence	196457-196490	10	0.706
NC_015977_13	13.88|2759768|33|NC_015977|PILER-CR	2759768-2759800	33	JQ680352	Unidentified phage clone 1013_scaffold1713 genomic sequence	5664-5696	10	0.697
NC_015977_13	13.110|2761248|33|NC_015977|PILER-CR	2761248-2761280	33	MG592662	Vibrio phage 2.058.O._10N.286.46.B8, partial genome	25213-25245	10	0.697
NC_015977_13	13.110|2761248|33|NC_015977|PILER-CR	2761248-2761280	33	MG592672	Vibrio phage 3.058.O._10N.286.46.B8, partial genome	25151-25183	10	0.697
NC_015977_13	13.120|2761923|33|NC_015977|PILER-CR	2761923-2761955	33	MT774405	CrAssphage cr115_1, complete genome	86176-86208	10	0.697
NC_015977_13	13.123|2762124|34|NC_015977|PILER-CR	2762124-2762157	34	NZ_CP015204	Rhodococcus sp. 008 plasmid pR8C1, complete sequence	91473-91506	10	0.706
NC_015977_13	13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT	2759630-2759663	34	MT713136	Aeromonas phage AP1, complete genome	170524-170557	11	0.676
NC_015977_13	13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT	2759630-2759663	34	MH791398	UNVERIFIED: Aeromonas phage Asswx_1, complete genome	147386-147419	11	0.676
NC_015977_13	13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT	2759630-2759663	34	NC_048674	Aeromonas phage AS-sw, partial genome	145808-145841	11	0.676
NC_015977_13	13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT	2759630-2759663	34	MF498773	Aeromonas phage AS-szw, complete genome	139701-139734	11	0.676
NC_015977_13	13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT	2759630-2759663	34	MF448340	Aeromonas phage AS-zj, complete genome	16031-16064	11	0.676
NC_015977_13	13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT	2759630-2759663	34	MH791404	UNVERIFIED: Aeromonas phage Assk, partial genome	122787-122820	11	0.676
NC_015977_13	13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT	2759630-2759663	34	MF498774	Aeromonas phage AS-yj, partial genome	228517-228550	11	0.676
NC_015977_13	13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT	2759630-2759663	34	MN871442	UNVERIFIED: Aeromonas phage Aszh-1, complete genome	108189-108222	11	0.676
NC_015977_13	13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT	2759630-2759663	34	MN871441	UNVERIFIED: Aeromonas phage AsSzw2, complete genome	10712-10745	11	0.676
NC_015977_13	13.70|2763935|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR	2763935-2763968	34	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	587622-587655	11	0.676
NC_015977_13	13.86|2759632|34|NC_015977|PILER-CR	2759632-2759665	34	MT713136	Aeromonas phage AP1, complete genome	170524-170557	11	0.676
NC_015977_13	13.86|2759632|34|NC_015977|PILER-CR	2759632-2759665	34	MH791398	UNVERIFIED: Aeromonas phage Asswx_1, complete genome	147386-147419	11	0.676
NC_015977_13	13.86|2759632|34|NC_015977|PILER-CR	2759632-2759665	34	NC_048674	Aeromonas phage AS-sw, partial genome	145808-145841	11	0.676
NC_015977_13	13.86|2759632|34|NC_015977|PILER-CR	2759632-2759665	34	MF498773	Aeromonas phage AS-szw, complete genome	139701-139734	11	0.676
NC_015977_13	13.86|2759632|34|NC_015977|PILER-CR	2759632-2759665	34	MF448340	Aeromonas phage AS-zj, complete genome	16031-16064	11	0.676
NC_015977_13	13.86|2759632|34|NC_015977|PILER-CR	2759632-2759665	34	MH791404	UNVERIFIED: Aeromonas phage Assk, partial genome	122787-122820	11	0.676
NC_015977_13	13.86|2759632|34|NC_015977|PILER-CR	2759632-2759665	34	MF498774	Aeromonas phage AS-yj, partial genome	228517-228550	11	0.676
NC_015977_13	13.86|2759632|34|NC_015977|PILER-CR	2759632-2759665	34	MN871442	UNVERIFIED: Aeromonas phage Aszh-1, complete genome	108189-108222	11	0.676
NC_015977_13	13.86|2759632|34|NC_015977|PILER-CR	2759632-2759665	34	MN871441	UNVERIFIED: Aeromonas phage AsSzw2, complete genome	10712-10745	11	0.676

1. spacer 13.16|2760305|34|NC_015977|CRISPRCasFinder,CRT matches to JQ680361 (Unidentified phage clone 2019_scaffold132 genomic sequence) position: , mismatch: 0, identity: 1.0

cgatctgcaatgcagtgtattttttcaattcaaa	CRISPR spacer
cgatctgcaatgcagtgtattttttcaattcaaa	Protospacer
**********************************

2. spacer 13.59|2763199|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to JQ680364 (Unidentified phage clone 2200_scaffold1335 genomic sequence) position: , mismatch: 0, identity: 1.0

atctgcaattcagcagcggattcagcagattga	CRISPR spacer
atctgcaattcagcagcggattcagcagattga	Protospacer
*********************************

3. spacer 13.65|2763597|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to JQ680364 (Unidentified phage clone 2200_scaffold1335 genomic sequence) position: , mismatch: 0, identity: 1.0

ctcaacctttgcttccatatcaatcatctgcat	CRISPR spacer
ctcaacctttgcttccatatcaatcatctgcat	Protospacer
*********************************

4. spacer 13.96|2760307|34|NC_015977|PILER-CR matches to JQ680361 (Unidentified phage clone 2019_scaffold132 genomic sequence) position: , mismatch: 0, identity: 1.0

cgatctgcaatgcagtgtattttttcaattcaaa	CRISPR spacer
cgatctgcaatgcagtgtattttttcaattcaaa	Protospacer
**********************************

5. spacer 13.40|2761921|33|NC_015977|CRISPRCasFinder,CRT matches to JQ680364 (Unidentified phage clone 2200_scaffold1335 genomic sequence) position: , mismatch: 1, identity: 0.97

ttctttggtgaattgtatcggataggtgcatca	CRISPR spacer
ttctttggtgaattatatcggataggtgcatca	Protospacer
**************.******************

6. spacer 13.58|2763134|32|NC_015977|CRISPRCasFinder,CRT matches to JQ680361 (Unidentified phage clone 2019_scaffold132 genomic sequence) position: , mismatch: 1, identity: 0.969

cacaagcctgtcatcctcaatgtcggaatatg	CRISPR spacer
cacaagcctgtcatcctcaatgtcagaatatg	Protospacer
************************.*******

7. spacer 13.120|2761923|33|NC_015977|PILER-CR matches to JQ680364 (Unidentified phage clone 2200_scaffold1335 genomic sequence) position: , mismatch: 1, identity: 0.97

ttctttggtgaattgtatcggataggtgcatca	CRISPR spacer
ttctttggtgaattatatcggataggtgcatca	Protospacer
**************.******************

8. spacer 13.2|2759366|32|NC_015977|CRISPRCasFinder matches to JQ680364 (Unidentified phage clone 2200_scaffold1335 genomic sequence) position: , mismatch: 2, identity: 0.938

ccagaacgggcaacaacatcagccatctgact	CRISPR spacer
ccaaaacgggcaacaacatcagccatctgacc	Protospacer
***.***************************.

9. spacer 13.34|2761517|35|NC_015977|CRISPRCasFinder,CRT matches to JQ680364 (Unidentified phage clone 2200_scaffold1335 genomic sequence) position: , mismatch: 2, identity: 0.943

gtgtgaagaacaaggtaacagatgccggatggtca	CRISPR spacer
gtgtgaagaacaaggtaacagatacaggatggtca	Protospacer
***********************.* *********

10. spacer 13.114|2761519|35|NC_015977|PILER-CR matches to JQ680364 (Unidentified phage clone 2200_scaffold1335 genomic sequence) position: , mismatch: 2, identity: 0.943

gtgtgaagaacaaggtaacagatgccggatggtca	CRISPR spacer
gtgtgaagaacaaggtaacagatacaggatggtca	Protospacer
***********************.* *********

11. spacer 1.4|469298|30|NC_015977|CRISPRCasFinder matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 6, identity: 0.8

agcggagacaacagcggaaacgg-agcgccg	CRISPR spacer
agcggcggcaacagcggaaacggtggcggt-	Protospacer
***** *.*************** .*** . 

12. spacer 7.1|1074842|28|NC_015977|CRISPRCasFinder matches to MN862333 (Trichosanthes kirilowii gokushovirus strain pt111-gok-1, complete genome) position: , mismatch: 6, identity: 0.786

agactgtgtcatgcctgaggcgtcccag	CRISPR spacer
aatgcgtgtcatgcatgaggcgtcgcag	Protospacer
*.  .********* ********* ***

13. spacer 1.1|469139|30|NC_015977|CRISPRCasFinder matches to NZ_LR134470 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 28, complete sequence) position: , mismatch: 7, identity: 0.767

agcggagaagcaccgggcggagacgacagt	CRISPR spacer
gcccgcgaagcaccggccggagacgacggc	Protospacer
. * * ********** **********.*.

14. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NZ_CP054842 (Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

----ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
ccttcga----gagcgcctggagacgcgccaagt	Protospacer
     **    ******* ***** *********

15. spacer 2.1|645183|27|NC_015977|CRISPRCasFinder matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 7, identity: 0.741

aaagtggaagacaggacttgaaccttt	CRISPR spacer
ggtctggaagacaggatttgaacctgc	Protospacer
..  ************.******** .

16. spacer 13.72|2764069|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043519 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_07, complete sequence) position: , mismatch: 7, identity: 0.794

catcatggtaagagtcatcaaaaaaagagtgagc	CRISPR spacer
accaaaggtcaaagtcatcaaaaaaagagtgagc	Protospacer
  . * *** *.**********************

17. spacer 1.1|469139|30|NC_015977|CRISPRCasFinder matches to NZ_CP031116 (Rubrobacter indicoceani strain SCSIO 08198 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

agcggagaagcaccgggcggagacgacagt	CRISPR spacer
ggcggagaagaaccgggcggagtccgggct	Protospacer
.********* *********** * . . *

18. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
cggcgcggagcgccgggagcagcgccgcg-	Protospacer
 *. .************** ******. * 

19. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
cggcgcggagcgccgggagcagcgccgcgg	Protospacer
 *. .************** ******. * 

20. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NZ_CP032615 (Pseudomonas sp. DY-1 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
tcaaacggagcgccgggcggagcgcaccct	Protospacer
  *************** *.*****    *

21. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NZ_CP032615 (Pseudomonas sp. DY-1 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
tcaaacggagcgccgggcggagcgcaccct	Protospacer
  *************** *.*****    *

22. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
cggcgcggagcgccgggagcagcgccgcgg	Protospacer
 *. .************** ******. * 

23. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
cggcgcggagcgccgggagcagcgccgcgg	Protospacer
 *. .************** ******. * 

24. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
cggcgcggagcgccgggagcagcgccgcgg	Protospacer
 *. .************** ******. * 

25. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
cggcgcggagcgccgggagcagcgccgcgg	Protospacer
 *. .************** ******. * 

26. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NC_012521 (Rhodococcus opacus B4 plasmid pROB02, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
cggcgcggagcgccgggagcagcgccgcg-	Protospacer
 *. .************** ******. * 

27. spacer 1.3|469241|30|NC_015977|CRISPRCasFinder matches to NZ_CP046575 (Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence) position: , mismatch: 8, identity: 0.733

ggaaacggagcgccgggagaagcgccaagt	CRISPR spacer
cggcgcggagcgccgggagcagcgccgcgg	Protospacer
 *. .************** ******. * 

28. spacer 13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT matches to MN694178 (Marine virus AFVG_250M81, complete genome) position: , mismatch: 8, identity: 0.758

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
attacatagtgaagctaaattggtaaaattttt	Protospacer
*   **********.****** ******  * *

29. spacer 13.60|2763265|33|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to MN364664 (Xanthomonas phage Xoo-sp15, complete genome) position: , mismatch: 8, identity: 0.758

tgtcaaagatggagtaaccaatctagataatat	CRISPR spacer
cgtcaaagatggattgaccaatctatctcaact	Protospacer
.************ *.*********  * *  *

30. spacer 13.79|2764541|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to MN234233 (Corynebacterium phage Colleen, complete genome) position: , mismatch: 8, identity: 0.765

tctgctccatgatctgctcaactaaagcgttagc	CRISPR spacer
cctgctccatgatctgctcatcaaacggatcatc	Protospacer
.******************* * ** * .*.* *

31. spacer 13.79|2764541|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to MH271317 (Corynebacterium phage TouchMeNot, complete genome) position: , mismatch: 8, identity: 0.765

tctgctccatgatctgctcaactaaagcgttagc	CRISPR spacer
cctgctccatgatctgctcatcaaacggatcatc	Protospacer
.******************* * ** * .*.* *

32. spacer 13.79|2764541|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to MF197383 (Corynebacterium phage Poushou, complete genome) position: , mismatch: 8, identity: 0.765

tctgctccatgatctgctcaactaaagcgttagc	CRISPR spacer
cctgctccatgatctgctcatcaaacggatcatc	Protospacer
.******************* * ** * .*.* *

33. spacer 13.98|2760442|33|NC_015977|PILER-CR matches to MN694178 (Marine virus AFVG_250M81, complete genome) position: , mismatch: 8, identity: 0.758

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
attacatagtgaagctaaattggtaaaattttt	Protospacer
*   **********.****** ******  * *

34. spacer 13.2|2759366|32|NC_015977|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagaacgggcaacaacatcagccatctgact	CRISPR spacer
tgagtccgggcaccaacatcagccctctgtga	Protospacer
. **  ****** *********** ****   

35. spacer 13.2|2759366|32|NC_015977|CRISPRCasFinder matches to MT857002 (Salmonella phage pSal-SNUABM-02, complete genome) position: , mismatch: 9, identity: 0.719

ccagaacgggcaacaacatcagccatctgact	CRISPR spacer
tcgcgccaggcaacaacatcatccatctcacg	Protospacer
.*. . *.************* ****** ** 

36. spacer 13.4|2759498|33|NC_015977|CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

ccagaatatcggtgatcgtggttgcttcttcca	CRISPR spacer
ccagaatattggtgatagtggttgagagcgcaa	Protospacer
*********.****** *******    . * *

37. spacer 13.9|2759832|33|NC_015977|CRISPRCasFinder,CRT matches to NZ_CP028203 (Bacillus subtilis strain SRCM102754 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

aaataatgacttgccctctttcatgtaattcgt	CRISPR spacer
gtatgatgacttgccctctttgatgttacagat	Protospacer
. **.**************** **** *.  .*

38. spacer 13.10|2759898|34|NC_015977|CRISPRCasFinder,CRT matches to MG271909 (Synechococcus phage S-LBS1, complete genome) position: , mismatch: 9, identity: 0.735

gccacagttatctcctgtcccggcagccactgcg	CRISPR spacer
tcccgcctgatctccattcccggcagccactgcc	Protospacer
 **    * ******  **************** 

39. spacer 13.11|2759965|33|NC_015977|CRISPRCasFinder,CRT matches to MN693390 (Marine virus AFVG_25M491, complete genome) position: , mismatch: 9, identity: 0.727

gtagctccgctgtttttataattgtagcaaggg	CRISPR spacer
atagctctgctgtttttttaattgtgtcgtctg	Protospacer
.******.********* *******. *.   *

40. spacer 13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

41. spacer 13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT matches to NC_019687 (Clostridium perfringens plasmid pCpb2-CP1, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

42. spacer 13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT matches to NC_019257 (Clostridium perfringens plasmid pJIR3844, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

43. spacer 13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT matches to NZ_CP025503 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

44. spacer 13.18|2760440|33|NC_015977|CRISPRCasFinder,CRT matches to NZ_CP013041 (Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

45. spacer 13.79|2764541|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021139 (Sulfuriferula sp. AH1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

tctgctccatgatctgctcaactaaagcgttagc	CRISPR spacer
ccttcggttcgatctgctcaaaaaaagcgttagc	Protospacer
.** *  . .***********  ***********

46. spacer 13.84|2759500|33|NC_015977|PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

ccagaatatcggtgatcgtggttgcttcttcca	CRISPR spacer
ccagaatattggtgatagtggttgagagcgcaa	Protospacer
*********.****** *******    . * *

47. spacer 13.89|2759834|33|NC_015977|PILER-CR matches to NZ_CP028203 (Bacillus subtilis strain SRCM102754 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

aaataatgacttgccctctttcatgtaattcgt	CRISPR spacer
gtatgatgacttgccctctttgatgttacagat	Protospacer
. **.**************** **** *.  .*

48. spacer 13.90|2759900|34|NC_015977|PILER-CR matches to MG271909 (Synechococcus phage S-LBS1, complete genome) position: , mismatch: 9, identity: 0.735

gccacagttatctcctgtcccggcagccactgcg	CRISPR spacer
tcccgcctgatctccattcccggcagccactgcc	Protospacer
 **    * ******  **************** 

49. spacer 13.91|2759967|33|NC_015977|PILER-CR matches to MN693390 (Marine virus AFVG_25M491, complete genome) position: , mismatch: 9, identity: 0.727

gtagctccgctgtttttataattgtagcaaggg	CRISPR spacer
atagctctgctgtttttttaattgtgtcgtctg	Protospacer
.******.********* *******. *.   *

50. spacer 13.98|2760442|33|NC_015977|PILER-CR matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

51. spacer 13.98|2760442|33|NC_015977|PILER-CR matches to NC_019687 (Clostridium perfringens plasmid pCpb2-CP1, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

52. spacer 13.98|2760442|33|NC_015977|PILER-CR matches to NC_019257 (Clostridium perfringens plasmid pJIR3844, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

53. spacer 13.98|2760442|33|NC_015977|PILER-CR matches to NZ_CP025503 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

54. spacer 13.98|2760442|33|NC_015977|PILER-CR matches to NZ_CP013041 (Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence) position: , mismatch: 9, identity: 0.727

aaatcatagtgaagttaaatttgtaaaagatat	CRISPR spacer
tgaaaataatcaagttaaatttgtaaaaggatt	Protospacer
 .*  ***.* ******************.  *

55. spacer 13.8|2759766|33|NC_015977|CRISPRCasFinder,CRT matches to JQ680352 (Unidentified phage clone 1013_scaffold1713 genomic sequence) position: , mismatch: 10, identity: 0.697

agttgcgaccgtggagtccgggaacactacaaa	CRISPR spacer
gacctcacccgtgaagtccgggaacacaacaat	Protospacer
.... *. *****.************* **** 

56. spacer 13.30|2761246|33|NC_015977|CRISPRCasFinder,CRT matches to MG592662 (Vibrio phage 2.058.O._10N.286.46.B8, partial genome) position: , mismatch: 10, identity: 0.697

attggattacacctaaaagcatcaatcaatgag	CRISPR spacer
caaaccttacacataaaaccatcaatcaatcgg	Protospacer
   .  ****** ***** *********** .*

57. spacer 13.30|2761246|33|NC_015977|CRISPRCasFinder,CRT matches to MG592672 (Vibrio phage 3.058.O._10N.286.46.B8, partial genome) position: , mismatch: 10, identity: 0.697

attggattacacctaaaagcatcaatcaatgag	CRISPR spacer
caaaccttacacataaaaccatcaatcaatcgg	Protospacer
   .  ****** ***** *********** .*

58. spacer 13.40|2761921|33|NC_015977|CRISPRCasFinder,CRT matches to MT774405 (CrAssphage cr115_1, complete genome) position: , mismatch: 10, identity: 0.697

ttctttggtgaattgtatcggataggtgcatca	CRISPR spacer
aattttggtgaattgtatagaataggttaggcg	Protospacer
  .*************** *.******  . *.

59. spacer 13.43|2762122|34|NC_015977|CRISPRCasFinder,CRT matches to NZ_CP015204 (Rhodococcus sp. 008 plasmid pR8C1, complete sequence) position: , mismatch: 10, identity: 0.706

gatggcgtactggctgtcagaacttgcgcttagt	CRISPR spacer
ggagacgtactggctgacagagcttgcgccagcg	Protospacer
*. *.*********** ****.*******. .  

60. spacer 13.72|2764069|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009639 (Bacillus cereus 03BB108 plasmid pBFI_1, complete sequence) position: , mismatch: 10, identity: 0.706

catcatggtaagagtcatcaaaaaaagagtgagc	CRISPR spacer
aacaaaaagaagattcaacaaaaaaagagtgagg	Protospacer
 *. * .. **** *** *************** 

61. spacer 13.72|2764069|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053963 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

catcatggtaagagtcatcaaaaaaagagtgagc	CRISPR spacer
aacaaaaagaagattcaacaaaaaaagagtgagg	Protospacer
 *. * .. **** *** *************** 

62. spacer 13.88|2759768|33|NC_015977|PILER-CR matches to JQ680352 (Unidentified phage clone 1013_scaffold1713 genomic sequence) position: , mismatch: 10, identity: 0.697

agttgcgaccgtggagtccgggaacactacaaa	CRISPR spacer
gacctcacccgtgaagtccgggaacacaacaat	Protospacer
.... *. *****.************* **** 

63. spacer 13.110|2761248|33|NC_015977|PILER-CR matches to MG592662 (Vibrio phage 2.058.O._10N.286.46.B8, partial genome) position: , mismatch: 10, identity: 0.697

attggattacacctaaaagcatcaatcaatgag	CRISPR spacer
caaaccttacacataaaaccatcaatcaatcgg	Protospacer
   .  ****** ***** *********** .*

64. spacer 13.110|2761248|33|NC_015977|PILER-CR matches to MG592672 (Vibrio phage 3.058.O._10N.286.46.B8, partial genome) position: , mismatch: 10, identity: 0.697

attggattacacctaaaagcatcaatcaatgag	CRISPR spacer
caaaccttacacataaaaccatcaatcaatcgg	Protospacer
   .  ****** ***** *********** .*

65. spacer 13.120|2761923|33|NC_015977|PILER-CR matches to MT774405 (CrAssphage cr115_1, complete genome) position: , mismatch: 10, identity: 0.697

ttctttggtgaattgtatcggataggtgcatca	CRISPR spacer
aattttggtgaattgtatagaataggttaggcg	Protospacer
  .*************** *.******  . *.

66. spacer 13.123|2762124|34|NC_015977|PILER-CR matches to NZ_CP015204 (Rhodococcus sp. 008 plasmid pR8C1, complete sequence) position: , mismatch: 10, identity: 0.706

gatggcgtactggctgtcagaacttgcgcttagt	CRISPR spacer
ggagacgtactggctgacagagcttgcgccagcg	Protospacer
*. *.*********** ****.*******. .  

67. spacer 13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT matches to MT713136 (Aeromonas phage AP1, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

68. spacer 13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT matches to MH791398 (UNVERIFIED: Aeromonas phage Asswx_1, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

69. spacer 13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT matches to NC_048674 (Aeromonas phage AS-sw, partial genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

70. spacer 13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT matches to MF498773 (Aeromonas phage AS-szw, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

71. spacer 13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT matches to MF448340 (Aeromonas phage AS-zj, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

72. spacer 13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT matches to MH791404 (UNVERIFIED: Aeromonas phage Assk, partial genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

73. spacer 13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT matches to MF498774 (Aeromonas phage AS-yj, partial genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

74. spacer 13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT matches to MN871442 (UNVERIFIED: Aeromonas phage Aszh-1, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

75. spacer 13.6|2759630|34|NC_015977|CRISPRCasFinder,CRT matches to MN871441 (UNVERIFIED: Aeromonas phage AsSzw2, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

76. spacer 13.70|2763935|34|NC_015977|CRISPRCasFinder,CRT,PILER-CR matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 11, identity: 0.676

attgctgcgttggaatccgtcatcatcatttttt	CRISPR spacer
gcggctgcgttggtagccgtcatcatcacgagcc	Protospacer
.. ********** * ************.   ..

77. spacer 13.86|2759632|34|NC_015977|PILER-CR matches to MT713136 (Aeromonas phage AP1, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

78. spacer 13.86|2759632|34|NC_015977|PILER-CR matches to MH791398 (UNVERIFIED: Aeromonas phage Asswx_1, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

79. spacer 13.86|2759632|34|NC_015977|PILER-CR matches to NC_048674 (Aeromonas phage AS-sw, partial genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

80. spacer 13.86|2759632|34|NC_015977|PILER-CR matches to MF498773 (Aeromonas phage AS-szw, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

81. spacer 13.86|2759632|34|NC_015977|PILER-CR matches to MF448340 (Aeromonas phage AS-zj, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

82. spacer 13.86|2759632|34|NC_015977|PILER-CR matches to MH791404 (UNVERIFIED: Aeromonas phage Assk, partial genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

83. spacer 13.86|2759632|34|NC_015977|PILER-CR matches to MF498774 (Aeromonas phage AS-yj, partial genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

84. spacer 13.86|2759632|34|NC_015977|PILER-CR matches to MN871442 (UNVERIFIED: Aeromonas phage Aszh-1, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

85. spacer 13.86|2759632|34|NC_015977|PILER-CR matches to MN871441 (UNVERIFIED: Aeromonas phage AsSzw2, complete genome) position: , mismatch: 11, identity: 0.676

ttttcttgttgatactatcatatcactttaaaaa	CRISPR spacer
ggtatttgttgattctatcatatcaatttgtttg	Protospacer
  * .******** *********** ***.   .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1936807 : 1946598	7	Bacillus_phage(50.0%)	NA	NA
DBSCAN-SWA_2	2694571 : 2703753	9	Enterobacteria_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_015977|1936807:1946598|DBSCAN-SWA
TATGCCGCAGCCGCTCATTTATCACATTGACGTCAATTCCGCATTTTTAAGCTGGGAAGCCGCCGAACTTCTGCGCCAGGATCCGGACGCCCCGGACATCCGCTCTTTTCCTTCCGTCATCGGCGGCAGCGAAAAGACACGGCACGGGATTGTTCTCGCCAAGTCGCCCTCCGCAGCCGCGCTCGGCGTCTGTACCGGCGAGCCGCTCGCCCAGGCAAGGCGCAAGTGCCCTGATTTAAAAATCTATGCCCCGCACTACAGCATCTATGTGGAGCGTTCCCGCCAGTTCATGGCACTTCTCAAAGAATATGCGCCCTCGGTGGACGCCTACAGCATCGACGAGGCCTTCTGCGACATGACAGGCACCTCCTCGCTCTACGGCAATCCGGTGGACTTTGCCCACAGGCTGAAGGACGAGATTCACACCCGGCTCGGCTTTACCGTGAACATCGGCATCTCCTCCAACCGGCTGCTCGCCAAGACTGCCTCCGACTTTGAAAAACCGGACAAAGTACACACGCTTTTCCCATCCGAAATGGAAGAAAAGTTCTGGCCGCTTCCGATCGAGGATCTGTTTTTCGTCGGGAAATCCACCGCCCTAAGGCTCCGCTCCCTCGGCATCACAACCATCGGCCAGCTGGCCAAAAGCGATCACGCCATGATTCTCTCCGTCTTTAAATCCCACGGCGACACCATCTGGAATTATGCCAACGGAATCGAATCCACACCGCTGTCCCACAACGACGCCGCAAGCAAGGGATTCGGCAATTCCCTCACGCTCCAGTACGATGTGACGGATACCGCGGTGGCAAAGCATGTGCTTCTCTCGCTCTGTGAGACGGTCGGTGCCAGAATCCGCGCTGCCGGCGCCTATGTCAGCGTGGTGCAGGTGCAGATTGTGGACAATGATTTCCGCCACACTTCCAGACAGGTAACGCTTGCTTCCTCCACCAACGTCACGGAGAAGCTGTACACCTGTGCCTGTGAGCTCTTCGACGAGCTCTGGGATCACCGTCCAATCCGGCTGCTCGGCGTCTCGACCGGCAAGGCGACGCAGGAACACTACGAGCAGTACGACCTGTTTGACATGCAGAAGAACGAGAAGCTCTCCCGCCTGAATGTGGCGGTCGACGCCATCCGCTCCCGCTACGGGGAAGATTCCATCAAGCGCGCCTGCTTTATCGAAGCGGACGATGCAGCGCCCGCGCTCTCCCACATGACCGGCGGCATGCAGCGCGCCAAGCGCAATGCAGCGCATCCGGCAGACGCGGCGTCCGATCCGGCACGTCCCCGTAATCGCCAGCCGTAACGGAAAAGGATGGGGGATGAGGAATATTCCGAAAAACAGATACCTGAAAGTTCCGGATAGAACGGACGGCAGCAAATTCTTTGAAGCAAAATTCGTGTATTTCTTCCATGCCACGTCCGGCATCCCATTTCGTGTCTTGGCCACGTTTGGACACTCACGGAGTGTGTCCGACAAGCTGCAGACAATGAGCGGACTTTCTGGTGTCCCTAATGGCACCTCTTCACAGACAATATAAAACCGCGCGAACCGAAACTCGCCGGCATCTGCTATTGAAAATAAGGCAGATGCCGACTCAAACATCGGCTTCGCGCGGTTATGTTCTATTCAGAGGTGTCATAAGGGACACACACAAAAGTCCTAAAATTGTCTGCCGGCTTGCGAACTCATTCCGTGGAGTGTTCCAAACTTGGAAAGACACAGATCATCGAAGATGCCAGGCGCGGCGTGGTTAAAAATACCGGATTTTGCGGTCAGAATTGCCGCCGTCCGTTCTATTCCGGAGCTTTCTGTTCCCGGGTGTTCCTGTAATATTCCTTATCCCTCCTTGCCGTACGGCAGTCCGCTTTCGGAGCATGCCGTCTCTTATGCCACGGTCTCCTCGAACTGCGAGTTATACAGGTTCGCATAAAAGCCCTGCTTTTTGAGCAGTTCTTCGTGTCTGCCCTGCTCTACGATGTCGCCGTCCTTCATGACGAGGATCATATCCGCATCGCGTATGGTCGACAGGCGGTGTGCGATGACAAAGCTGGTACGCCCCTTCATCAGGTGATCCATCGCTTTCTGGATTGCCACCTCCGTGCGTGTGTCAACCGACGACGTCGCCTCGTCAAGAATCAGGATCTTGTTGTCTGCAAGAATTGCTCTGGCGATGGTGAGAAGCTGCTTCTGCCCCTGTGAGACGTTGCTTGCATCCTCGTTTAACTCCATCTGATAGCCACCCGGCAGTGTGCGGATAAAGTGGTCGGCGTGCGCCGCCTTCGCTGCGGCAATGACTTCCTCATCCGTCGCATCCAGCCTGCCGTAACGGATATTTTCCATGATCGTTCCCTGAAACAGCCAGGTATCCTGAAGCACCATACCGAATGCCTCACGCAGATCCCGCCGGTTAAAGCTTCTCACGTCATGACCGTCAAGGCAGATTGCGCCGCTGTTTACATCATAAAAACGCATCAGAAGTTTGACCATAGTGGTCTTTCCGGCGCCTGTCGGTCCGACAATGGCAATCTTTTGTCCCGGAGCCACATTTACGCTGAAGTCGTGAATGATCGTCTGATCCGGCTGGTAGCCGAAATGAACATGCTCAAACGATACCGCGCCTGTCACCTTGGAAATATCACAAGGATTCTCCACGGACTGGTCTTCTTCCTCCTCATTCAGGAATTCAAACACACGCTCCGAAGCCGCCGCCATCGACTGCACCTGGTTGATGACCTGTGCGATCTGCTGGATCGGCTGTGTGAAACTTTTCACGTACTGGATAAACGCCTGAATATCTCCGATTGTGATCGTTCCCCGGATAGCAAGCAGACCTCCGCTAAGCGCAACGGCTGCATATCCGAGATTTCCGACAAACATCATGATCGGCTGCATCATACCGGAGAGAAACTGTGACTTCCATGCCGATTCATACAGCTTCTGGTTCGTCGCATCAAACTCCTCGATCGTATCCTGCTCTCTGTTAAATGCCTTAATGACCAGATGTCCTCCGTAAATCTCCTCCACCTGTCCGTTGATATGTCCCAGATATTCCTGCTGATTCTTAAAGTATTTCTGCGACTTCTTCACAACGAAGGAAATCAGCCCCGCGGAGACCGGCAGGATCACAAGCGCGATCAGCGTCATGAGCGGCGAGATGCTGAGCATCATGATAAATACACCGATCAGTGTCGCAACCGAGGTAATGATCGTGGTAATGCTCTGGTTGAGTCCCTGTCCTAAGGTATCCACATCGTTGGTGATTCTGGAAAGCACCTCACCGTAGGTACGGCTCTCAAAATACTTCATCGGCATTCGGTTGATCTTCTCCGAGATTTCCTTCCGGAGCTGGTAACAGATCTTCTGGGTCACCCCGGTCATAATCCAGCCCTGCACAAACGAAAACAGTGCACTGAGAAGATACAGCCCCAATACAAACAGCAGGATCTTTCCTATATAAGTAAAATCTATTCCGCCTGTTCCGCGGATCTTCGCCATCAGTCCTTCCGAGAGCGCTGTCGTCGCTTTTCCCAGAATCTTTGGTCCGATTACGCTGAACACCGTGGAGCACGCCGCAAATACTGCAACAATAACGATTGCAAACTTAAAATGCCGGATATAGGATGCCAGTTTTCCGATGGCTCCCTTTAAATCCTTCGGCTTCTCTCCCGGCGTCATACCGCGTCCGCCCATCGGTCCACGGCGTCTGCCCATTCCTTTTGCCGTCTCATTTCCGTTACTCATTCACAGACACCTCCTGTTCCTCCATTCCAAGCTCTTTTGCCGACATCTGGGATCTCGCGATCTCACGATAAGTTTCACAGCCGCGAAGCAGTTCCTCGTGTGTTCCCTTTCCGACAATGCGTCCATCGTTTAATACCAGAATCTGATCTGCATGCAGGATCGTGCTGATCCGCTGCGCGACGATGATCACCGTCTTGTCGACAACCTTTTTGGCAAGTGCCCGGCGCAGTGCGGCATCCGTCTTCAGATCCAGTGCGGAAAAGCTGTCGTCAAAAATAAAAACCTGCGGCTGCTTTGCGATCGCTCTGGCGATGGCAAGGCGCTGTTTCTGGCCTCCCGACACATTGCTTCCACCCTGTGCAATGGCACTGTCATATCCTTCTTTTTTCTCCGCGATAAAATCCGATGCCTGCGCAATCTCTGCCGCCTCCCGGATCTGTTCATCGGTGGCATCATCCTTGCCGAATCTTAAATTCGATGCGATGGTACCGGAAAACAGTACTCCTTTCTGTGGTACAAAACCAATCTCCTCCCGAAGTTCTGCCATGGCAAGCTTCCGGATATCAATGCCGTCCATGGTAATGCTTCCGCCCGTCACATCATAAAGACGCGGAATCAGGTTCACCAGTGTTGACTTTCCGCAGCCGGTACTGCCGATGATTGCCGTCGTCTTTCCCGGCTCCGCAACAAAGTCAATGTCCGAGAGCACATCCTCCTGCGCGTTCGGGTAGCGGAAGTTCACATGGGAAAAACAGATCACGCCGCGGTGTTCTTTAATTTTCTCCGGCTGCATTGGTTCCGCGATCGAAGACTGCGTGCGGATGACCTCATCAATACGCTCCGCAGCCACTGCCGCACGCGGAAGCATAATCGACATTGCCGCGAGCATTAAGAATGCCATGACAATCATCATCGCATACGTGATAAACGCCGTCATGGAGCCGACCTGCATAGTTCCCTGATCGATCTTATGTGCGCCGAACCACACAATTCCAACCGTAAGCACATTCATGATCATCATCATTCCCGGCATCATAAATGTCATGACGCGGTTTGTAAAAAGCATGGTTTTCGTCAGATCGCGGTTCGCATCGTCAAAACGCTGCTCCTCTTTTTTCTCCCTGCCGAACGCCCGGATGACCGAAAGTCCTGTCAGGATTTCACGCGCCACGAGGTTGATGCGGTCCACCAGTTTCTGCATCAGCTTAAAACGCGGCATCGCAACCGCCATCAGAACCATCACATATCCCAGAATTACAAGCACTGCAAGCACAATGATCCAGCCCATACCGGCACCGGTCTGCAGTACCTTTAAGATTCCGCCGATTCCAAGGATCGGTGCATAAGCTACCATACGGATCAGAATCGCGCATGTCATCTGAATCTGCTGGATATCGTTCGTACTCCGGGTAATTAACGAAGCTGTTGAAAAACGATCCATCTCGGCATTGGAAAAGCTTACCACCCTTTTAAATATTTTTCCGCGGAGATCACGTCCGATTCCTGCACCGATGCGGGCGCCGATAAAGCCGACTAAGACCGTGGCAATCCCCATAATCAGAGCCATTCCCACCATTTTCAAACCGGCTTTCCACAGATAAGACTTCTGAATTGCTTCCACATCCACGCCTGCCGCCGCATCGCAGCCTGCCGCGTACGCCACGCCCATCGATTTGACAAGCGAACTGCCCATGGCATCGAGCATCGAGTTGAGTTCCCCGCGCATTGATAAAAGCTGGTCTTTTTCCAGCATGCCGCCGGATACCATCGCCTGCAGCAGATCTCTCATATCCACACAGGTGACTGTCGTCGTATTTCCGTCCTCGTTCTGCGTCTCTTTTTCAAATGTTTTTAATTCCACGCCCATGGACGCGCCGATCTGCTCGATCGTCATTCCGTCCAGCGCAGACTCATCTGTATGCATCTGCTCTGCCATCAGTTTCTTAAATGTACTTTCCTCCATAGCAGACATCTGATAATTCATAAGAAGCGGTACGAGAAACGTATCATCCAGTTCCTCCAGCCGTTCTTCCCCGGTCACATTCCGCTCGTACACACTGCCATTTAACGCATAGCTTTCCTCCCAGGATGCCGTCTCTTCATCCGTCATCAAAAGTTCTGCCTTCTCATACTCCTCCGGTGTCAATGCCTCCGGCAGGATGTGTTTTATTCCCTGATTCTGAATTCCGACATCAATAATGTCCGATGTGTATGCCGGCAGTGACAGATCGCACCACGCCTGCACAAACAACAGCAATAACACCAGGATCAGCGGTTTCCAGTATGGAATCATATTTTTAAAAATCTTTCCCATGTTGTCCTTCCTTTCTGTTTCGCATACTTCTCTTCTCGATTTCTTCTGCTGCAATGTCATATAATTCATCCAGGCATACTATGAGCTTTTTGAGATCCTGTTCATCCATCTGCGAAATGACTGCCCTGCCAAATTCCTGCATGGTGCATGTCATATTTTGCTGCATGTCCTCCCCACTCTCCGTCAGAGCGACACAGGTATTGCGCCGGTCTTTCGGATCTGTCATTCTGCAGATCCAGCCGTGATCCTCCAGATTCTTCAAAGTCCTTGACACAGCAGAATTCTGGGTATGAAGCTTCTCTGCCAGTTCAGACACTGTAGCTCTCCCATTATTCTTTTCCTGGTTCAACTGTGAAATTGCCCAGAGCATCATGCCGTCGCTTTTTGTCATATCGGAAAACAGTTCTCCGATCCGCAGTTTTCCGAAACGGTTCATCGCCCGAAATAAACCCGCATACAATTCTTCCATATTTCACCACCTTGTTAATTATTAACACTGTTACATAATTTGGGACATTATAATAGCACAGGGAGATTGCTGCGTCAAGCAATCTCCCTGTGTTTATCTTTTTTTAATAATTCTATTGTATCTGGCTGCTGGCATGAATCGTATCCAGCATCTGTCTGAGTTCTTTCATGGCGAACTGTCCCGGCGCACTCGGCTTTTCGTGCGCGCCGAATGTGACGCAGGAGCCGAACGTCTCCCCACTGATCCTGCTGATGCCGCCGAGTGATCCCATGGACATCGTAATCACCGGCGTATCCGGATTCTCCTCTCTAAACTGTGCCGTCACATCCAGCAGATTGAGCACGTCTTTATAATTCTGCGGCATCACCGCAAGCTTTACAATATCCGCTCCGCCGGCGCACATTTTCTCCAGCAGCATCTTCATGACTTCCGGAGACGGCGTCTGCTCAAAATCGTGATGTGAGGCAATGACCGACACTCCCATCTCCCGCAGCCTTTTTATCTTATGGAGCGGTCGGTCTTCCTCAAAGAATTCCAGATCCACCAGATCGACACAGCCGGATTCCGCCGCAAGATCGTGCAGATCGTCGAGCTGTTCCGCTTTCACCTGCGCCATGCCTCCCTGATGCGCGGTACGGAATGTATACAGGAAAAGCTTCTCCCCCAGCAGAGGCGCCACAGCCTCAAATACGCTCCGGATTGAATTGTAATCTGTAAAATCGCGGAATGCATCCACTCTCCACTCGATCATATCCGCGGTGCTCTGACTCAGATACGTGATCTCCCGGATCACCGACTGTGCATCCTGCTCTACCACGGGAACGCAGATCAACGGTTCCCCTCTCCCAATCACACGGTGTTTTATCTCCAATGGCTTCATGTTCCTGCTCCCTTTCCATACCTGCATTTTTTCATCCGGACCACTTCCATGTACGGCTTTTTTTACAGTTTACTCCATTCTGAATAAATATGCAAATATTTGACATCTATTGTAATATCAGCTAAGATAATTACGATTCAAACAGAAAGGAGTGTGCGGTGTCTTTTTCCTTATCCACACAATGTCATATGAGTTTTACATTTTTAAACGAACTGCCGTCACCGGCCGAAATCAAACAGAACTATCCGCTTTCCGACAAGCTGAAAGCGTTAAAAAAAGAGCGTGATGCTGCGATCAGCGCCGTCATTACCGGAGCAGATTCCCGTTTTCTCGTCATCATCGGACCTTGCTCCGCGGACAACGAAGATTCCGTCTGTGATTATGTCAGCCGCCTCACTTCCATTCAGGAGGATGTTGCGGACAAGCTGATTCTGATTCCGCGTGTCTACACCAACAAACCACGCACCACAGGCGAAGGTTATAAGGGTATTGCCTCACAGCCGGATCCGGAAAAAGCGCCGGACATGATTGAGGGACTGATCGCCATGCGCAAAATGCACATTCGCGCGATCGAGGAAAGCGGTCTTACCTGCGCCGACGAGATGCTCTACCCGGAGAACTGGGGCTATGTGGAAGACCTGTTGTCCTATGTCGCCATCGGCGCGCGTTCCGTCGAGGATCAGCAGCACCGTCTCACCGTGAGCGGTTTTGATGTGGCTTCCGGCATGAAGAACCCGACCAGCGGCGACTTTTCCGTCATGCTCAATTCCGTCTACGCCGCACAGCACCCACACCACTTCGTATACCGCGGCTATGAAGTCGAGACAACCGGCAACCCGCTCACACACGTTGTGCTTCGCGGCGCGGTCAGCAAGCACGGCAACACCACACAGAATTACCACTACGAAGATCTGATCCGCCTCTGCGAGATGTACCAGGAAATGGATCTCGTCAATCCGGCTGCTGTGGTCGATGTCAACCACTCCAATTCCGGCAAGAAATTCAAGGAGCAGATCCGCATCGTAAAGGAAGTCATGCACAACAGACAGGTTTCCTCCGATATCGAACACATGGTAAAAGGTGTTATGATCGAGAGCTATATCGAGGAAGGCAACCAGAAAATCGGCGATCACATCTATGGCAAATCCATCACCGACCCGTGCCTTGGCTGGGAGGATTCCAGAGATCTGATCTATACCATTGCAGATATGTGCCGCTAACGCACGTTCTGAAAAAGAATCTCGCTTGCGGGATTCTCCGCGCGCGAGCGGTTCGCAAAGCGATATGTTCCTTACCGCGAGCTGCGCATCCTCGCGGAGCGTTTTTTATTTCATAGGAAGGTTCTACTTTCACACATGAATGTATCACGGTATTTCCTATGAAACAAAAGAGGTGCAACCACACAAACCATGTGGCTGCACCTCTTTTTATGTTCTTTTCTATCTTCTTTTTTATATTCTTTTTCTATTATATATTCTCTTTTATATCCCGTCTTCTTATCCGCGCGGATGCGCCTTCAGATAAACCTCCCGCATCTGCAGATCTTTCGCCTGCGCATATATCTGCGTTGTGGAAATATCCGAATGTCCCAGCATCTCCTGCACCGATTTTAAGTCCGCCCCGTTGCCGACCATATGCGCCGCAAAGGAATGTCTCAACATATGCGGCGTAATCTCCGCTTCTATTCCCGCCTTTTTGCCGTAGCCCTTCATCAGCTTCCAGAATCCCTGGCGGCTCATCGGCTGCCCGGAACAGTTCGTAAACAGGCGGTCTTCCTTCTCATCTGATATAAGCTTCGGCCTGCCCTCTGCAAGATAAGCTTCCAGCGCCTTGCGCGCAATCATTCCAAACGGAATGATCCGTTCCTTATGTCCATCCGAGCAGGTCAGATACTCCATCCGCAGATTCACATCCGACACCCTCAGTGAAATCAGCTCGGACACACGGATGCCTGTCGCATACAATAACTCCAGCATGGCTTTATCCCGCAGTTCCTTCGGCGATGTACCTCCCGGCTGTTCCAAAAGGCGCGTCACCTCTTCCGTCGTCAATACTGTCGGCATTTTCTTCTCAATCCGCGGCGCCTTTAAACGCTCGGACGGATCTACTGCCAGTCTCCGCTCCTTCTCCATATAATGATAGAACGCCTTCATGGACGCAATGCTTCGCGAGATCGTCGCAGGCTTTCTTCCTTCCTTTTCCAGATAGATGACGTAGGATGTCAGACTTGTAGCCGTCACCTCATTCACATCGCAGATTCCCTGTGCCAGAAGATACTGATTCATTTTCTTCAAATCACGCGCATAAGAAACCTCCGTGTTCTCTGAGGTATTCTTCTCCTGATGTAAATATTGAATGAAATTCTGTATGTCCTGCGTCAT

Protein sequences of DBSCAN-SWA_1

>NC_015977|1936807:1946598|1936807_1938115_+|WP_014079927.1|DBSCAN-SWA
MPQPLIYHIDVNSAFLSWEAAELLRQDPDAPDIRSFPSVIGGSEKTRHGIVLAKSPSAAALGVCTGEPLAQARRKCPDLKIYAPHYSIYVERSRQFMALLKEYAPSVDAYSIDEAFCDMTGTSSLYGNPVDFAHRLKDEIHTRLGFTVNIGISSNRLLAKTASDFEKPDKVHTLFPSEMEEKFWPLPIEDLFFVGKSTALRLRSLGITTIGQLAKSDHAMILSVFKSHGDTIWNYANGIESTPLSHNDAASKGFGNSLTLQYDVTDTAVAKHVLLSLCETVGARIRAAGAYVSVVQVQIVDNDFRHTSRQVTLASSTNVTEKLYTCACELFDELWDHRPIRLLGVSTGKATQEHYEQYDLFDMQKNEKLSRLNVAVDAIRSRYGEDSIKRACFIEADDAAPALSHMTGGMQRAKRNAAHPADAASDPARPRNRQP
>NC_015977|1936807:1946598|1945713_1946598_-|WP_014079933.1|DBSCAN-SWA
MTQDIQNFIQYLHQEKNTSENTEVSYARDLKKMNQYLLAQGICDVNEVTATSLTSYVIYLEKEGRKPATISRSIASMKAFYHYMEKERRLAVDPSERLKAPRIEKKMPTVLTTEEVTRLLEQPGGTSPKELRDKAMLELLYATGIRVSELISLRVSDVNLRMEYLTCSDGHKERIIPFGMIARKALEAYLAEGRPKLISDEKEDRLFTNCSGQPMSRQGFWKLMKGYGKKAGIEAEITPHMLRHSFAAHMVGNGADLKSVQEMLGHSDISTTQIYAQAKDLQMREVYLKAHPRG
>NC_015977|1936807:1946598|1940546_1942868_-|WP_014079929.1|DBSCAN-SWA
MGKIFKNMIPYWKPLILVLLLLFVQAWCDLSLPAYTSDIIDVGIQNQGIKHILPEALTPEEYEKAELLMTDEETASWEESYALNGSVYERNVTGEERLEELDDTFLVPLLMNYQMSAMEESTFKKLMAEQMHTDESALDGMTIEQIGASMGVELKTFEKETQNEDGNTTTVTCVDMRDLLQAMVSGGMLEKDQLLSMRGELNSMLDAMGSSLVKSMGVAYAAGCDAAAGVDVEAIQKSYLWKAGLKMVGMALIMGIATVLVGFIGARIGAGIGRDLRGKIFKRVVSFSNAEMDRFSTASLITRSTNDIQQIQMTCAILIRMVAYAPILGIGGILKVLQTGAGMGWIIVLAVLVILGYVMVLMAVAMPRFKLMQKLVDRINLVAREILTGLSVIRAFGREKKEEQRFDDANRDLTKTMLFTNRVMTFMMPGMMMIMNVLTVGIVWFGAHKIDQGTMQVGSMTAFITYAMMIVMAFLMLAAMSIMLPRAAVAAERIDEVIRTQSSIAEPMQPEKIKEHRGVICFSHVNFRYPNAQEDVLSDIDFVAEPGKTTAIIGSTGCGKSTLVNLIPRLYDVTGGSITMDGIDIRKLAMAELREEIGFVPQKGVLFSGTIASNLRFGKDDATDEQIREAAEIAQASDFIAEKKEGYDSAIAQGGSNVSGGQKQRLAIARAIAKQPQVFIFDDSFSALDLKTDAALRRALAKKVVDKTVIIVAQRISTILHADQILVLNDGRIVGKGTHEELLRGCETYREIARSQMSAKELGMEEQEVSVNE
>NC_015977|1936807:1946598|1943449_1944208_-|WP_052298547.1|DBSCAN-SWA
MEIKHRVIGRGEPLICVPVVEQDAQSVIREITYLSQSTADMIEWRVDAFRDFTDYNSIRSVFEAVAPLLGEKLFLYTFRTAHQGGMAQVKAEQLDDLHDLAAESGCVDLVDLEFFEEDRPLHKIKRLREMGVSVIASHHDFEQTPSPEVMKMLLEKMCAGGADIVKLAVMPQNYKDVLNLLDVTAQFREENPDTPVITMSMGSLGGISRISGETFGSCVTFGAHEKPSAPGQFAMKELRQMLDTIHASSQIQ
>NC_015977|1936807:1946598|1938697_1940554_-|WP_014079928.1|DBSCAN-SWA
MSNGNETAKGMGRRRGPMGGRGMTPGEKPKDLKGAIGKLASYIRHFKFAIVIVAVFAACSTVFSVIGPKILGKATTALSEGLMAKIRGTGGIDFTYIGKILLFVLGLYLLSALFSFVQGWIMTGVTQKICYQLRKEISEKINRMPMKYFESRTYGEVLSRITNDVDTLGQGLNQSITTIITSVATLIGVFIMMLSISPLMTLIALVILPVSAGLISFVVKKSQKYFKNQQEYLGHINGQVEEIYGGHLVIKAFNREQDTIEEFDATNQKLYESAWKSQFLSGMMQPIMMFVGNLGYAAVALSGGLLAIRGTITIGDIQAFIQYVKSFTQPIQQIAQVINQVQSMAAASERVFEFLNEEEEDQSVENPCDISKVTGAVSFEHVHFGYQPDQTIIHDFSVNVAPGQKIAIVGPTGAGKTTMVKLLMRFYDVNSGAICLDGHDVRSFNRRDLREAFGMVLQDTWLFQGTIMENIRYGRLDATDEEVIAAAKAAHADHFIRTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNKILILDEATSSVDTRTEVAIQKAMDHLMKGRTSFVIAHRLSTIRDADMILVMKDGDIVEQGRHEELLKKQGFYANLYNSQFEETVA
>NC_015977|1936807:1946598|1944405_1945437_+|WP_014079932.1|DBSCAN-SWA
MSFTFLNELPSPAEIKQNYPLSDKLKALKKERDAAISAVITGADSRFLVIIGPCSADNEDSVCDYVSRLTSIQEDVADKLILIPRVYTNKPRTTGEGYKGIASQPDPEKAPDMIEGLIAMRKMHIRAIEESGLTCADEMLYPENWGYVEDLLSYVAIGARSVEDQQHRLTVSGFDVASGMKNPTSGDFSVMLNSVYAAQHPHHFVYRGYEVETTGNPLTHVVLRGAVSKHGNTTQNYHYEDLIRLCEMYQEMDLVNPAAVVDVNHSNSGKKFKEQIRIVKEVMHNRQVSSDIEHMVKGVMIESYIEEGNQKIGDHIYGKSITDPCLGWEDSRDLIYTIADMCR
>NC_015977|1936807:1946598|1942851_1943337_-|WP_014079930.1|DBSCAN-SWA
MEELYAGLFRAMNRFGKLRIGELFSDMTKSDGMMLWAISQLNQEKNNGRATVSELAEKLHTQNSAVSRTLKNLEDHGWICRMTDPKDRRNTCVALTESGEDMQQNMTCTMQEFGRAVISQMDEQDLKKLIVCLDELYDIAAEEIEKRSMRNRKEGQHGKDF

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014079927.1|1936807_1938115_+	DNA polymerase IV	I6RSM4	Salmonella_phage	3.7e-21	25.1
WP_014079928.1|1938697_1940554_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.7e-54	29.1
WP_014079929.1|1940546_1942868_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.0e-41	27.7
WP_014079930.1|1942851_1943337_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_052298547.1|1943449_1944208_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	2.1e-24	35.4
WP_014079932.1|1944405_1945437_+	3-deoxy-7-phosphoheptulonate synthase	A0A067ZJG7	Escherichia_phage	1.3e-48	35.4
WP_014079933.1|1945713_1946598_-	site-specific tyrosine recombinase XerD	A0A142F1N9	Bacillus_phage	8.1e-28	29.2

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NC_015977|2694571:2703753|DBSCAN-SWA
TCTATTCCTCCACACGCTCCACGGTCGTCTCCGAATTCATATCATAGAAACCAACCGTATTCTTGTCCGATATAACCGTAACGCCCACCACATCATACAGCCGGTGGTACGCCCGGAACTCGCCTCCCACGTAGCCGGTACAGCTGATGGACAGCAGATACTCGCCTCCCTGCAGATCCATATTCTGTTTGAAGGAGGCCACGTAGATCTCTCCCGCCCGTGCCAGTCCGACGCCGACCTTCTCGTACATGGTGTTCGTTCCCGTGACAGCGGTTCCCTGCACGGTCTTAAACGTATAGGTAAAAATCGGATCCTGAATATCGGTGTGAAACTGCACCTTTGAGCGGATAGTAAAAGACGTCCCCTTCTGGATACAGCTCGTATAGCTTCCGTACTCGTCAATCACCGCAAAATCAATGATTTCCGCTTCCCCGGTTCCGTATTCATTCACCTGCGGATTCAACTCATAGTTGGATTTCCACAGCTTCTTTGTCCCATTTTCCTTCGCGTCCGCAAGCACCTGTCCGCTCGCAATATTCTGCGACTGATTTAACAGCACTTTCTTGTACAGGTTGATCGTGTCCTTGGGATTTCCCTCCGACAGCTTGACGCCCTTGTTTAAAAGAATCACGCGGTCACAGTATTTTGCCACACTGCTGATGTCGTGGCTGACAAAAATAATCGTCTTGCCCTCCGCCTTGAAATCCTCAAACTTTTTATAACATTTTGCCTGGAAAAACACATCTCCGACCGACAGCGCCTCATCGACAATGAGGATCTCCGGATCAATGTTGATCGCCACCGCAAACGCCAGACGCACAAACATACCGCTGGAATACGTCTTGCACGGCTGGTTTACAAATTCACCGATATCCGCAAATTTCAGAATATCGTCCAGCCTTGCATCCATCTCCTCCCTGGAGAATCCCAGCATCATGCCGTTGAGATATACGTTTTCGATGCCGGTGTATTCCATGTTAAAGCCTGCGCCAAGTTCCAGCAGCGCCGAGATTCTTCCGTCGATCTCGACCTCACCGCTTGTGGGTGAGAGCACGCCTGTGATAATTTTTAAGATGGTGGATTTGCCGGAGCCGTTCGTTCCGATGATTCCGACCGTCTCACCTTTTTTCACATCGAACGTGACATGGTCGAGTGCCCGATGTTCTTTGAATCTGCCTTTTCCCGCAAGCCCCAGTGCGTCAAACAGCCGCTCCGAGGGTCTGTTGTATAGCCGGTATACCTTGCTGACATCTTCTACCCTGATTGCTAACTCATCCATTCAGTTACAAATTCCTCTCTATAATACATCCGCAAAATGCGGTCGCAGCTTCTTGAACACAGTCGTTCCGAGAAACAGTAGCACTGCCGTCACAACCCAGAAATATACGGTAAGCCCCATATCCTCCCAGAATCCGATATGATTGATCAGCGCGTTCCGGTATCCCGAAACAATATAGTACATCGGATTGAGCTTTAACACGGCAATCGCCCATCCCGGTATCTGCACCATCGTCTCAAAGTTCCACATAATCGGCGTCACCCACATGCCAATCTGCAACAGGATTCCCACCACTTCTTTCATGTCGCGGAAAAATACCGTCACCGCACTCGTCGCATACACAAGCCCTGTCGCAAACAGAATCATACAGAACGAATAATATATGACCTGCAGCGCATACCAGTCCGGCATATATCCCATACAGATGAAAAGCACAATCGTAAACGCCACAAAAAACAGATGCGTAAACAGCGCCGATATCATTTTTACCACTGGGAGCATATCGATCTGGAACACAACTTTTTTTACCAGATAGCTGTACTCCACCAGAACACCGGTGCCGCCGTTTAGCGCTTCCTGAAAATAGAACCACGGCACAAGTCCCGCTGTCAGCCACAGCACGAATGGAATCTCAATTCCGGTCCTAAGATCCGTCGCCTTGGAATTCAGTCCCTTCTCAAACACGAACCAGTACAAAAGCACCGTGATTACCGGCTGGACGAACGCCCAGACCACACCAAAGTAGGAGCCTGCAAACTTCTTCTTGATGTCATTTTTTGCCAGATTCCATACCAGGCTTCTACTTCCGATCAGATGATGAAGCAGTGATGTATCCTTCTTCTTTCCTGCCATCTATGTTCTCCTAATCTCTTTCTATCCCTCTGCAGGCGCATGTTTTTCCTTACTTTATGCCGTGCGCCGCCTTATATTCTGCGAAGCTTTTCTGCACTTTATCCTTGTCGGATAAGATCAGATCCGCCGCTGTCATTCCTTCCGGCATCGGCCATTCCACGCCGACCTCGGCATCATTCCACAGAATACCGCCCTCATCGTTCGGATGGTAGAAGTCCGTTACCTTGTAGCAGAACTCTGCCTCCTCCGACAGCACGATAAATCCGTGCGCAAAATTCTTCGGCACGAAAAACTGCTTCTTGTTCTCCGCGGAAAGCAGCACGCCGTACCATTTGCCGAACGTCTTCGATCCCTCCCTTAAATCCACCGCAACGTCAAACACCTCGCCGTTTACCACACGGACCAGCTTGTCCTGCGGATAATTGATCTGAAAATGAAGCCCGCGGAGCACGCCCTTTTTCGATGCTGACTGGTTGTCCTGCACGAACTGGCAGTCAATCCCCGCCTCCGCAAAATCGTTATAATTGTAAGTCTCCATAAAATATCCGCGCGCATCGCCGAATACTGCCGGCTCGATGACCTTCAGTCCCTCAATGCCGTTGCAATTCTCTGTTACCTTGATCTTACCCATGTTCTATAATCCCTCCGCGATTTCCATCAGATATTTGCCGTAATCCGTCTTTAAGAGCGGCTGTGCCAGCTTGATGAGCTGGTCTCTGTCGATAAAACCACGCTTATACGCGATCTCCTCAATGCAGGAGATGTATAAGCCCTGACGTTTCTGGAATGCAGACACAAAATCTGCCGCGGCAAGCAGCATGTCGTGATTTCCCGTATCCAGCCATGCGAATCCTCTTCCAAGCGTCTCCACGCTCAATGTTCCACGCTCCAGATAAGCGTTGTTGACCGAGGTGATCTCGATCTCCCCGCGTGCGGACGGCTTGACGTTTTTCGCAATCTCCACCACATTGTTATCGTAAAAGTAAAGTCCCGGCACTGCATAATTGGACTTCGGGTGCTCCGGCTTTTCCTCGATGGACAGCGCCTTGCCATTCTCATCGAATTCCACGACGCCGTACTCTCTCGGATCTCTGACATAGTAGCCGAAAATCGTCGCACCCTGCTCCTTTTCCGTGCGCTCCGCTGCGCTCTTTAACACTTTGGAAAAGCTCTGTCCGTAGAAAATATTATCGCCGAGCACCAGTGCCACCGCATCATTTCCGATAAATTTTTCACCGATGATAAATGCGTCCGCGAGACCTCTCGGCTGCTCCTGTACTGCATAGGAAAAACTCATGCCGAGCTGGCTTCCGTCTCCGAAAAGCTCCTCAAACACCGGCAGATCCCGCGGTGTGGAGATGATTAACACCTCGCGGATTCCCGCAAGCATCAACGTTGATAATGGATAGTAGATCATCGGCTTGTCATACACCGGCATGATCTGTTTTGAAATCGCTTTAGTCAGCGGATAAAGTCTGGTACCGGAGCCTCCGGCAAGTATTATTCCCTTCATCTGAAAATCCTCCCATTTTATCCAATATACGCCACGTCCATTAACATTTGTAACGGACACAGCTTAATTTTTTCTTAATTTAAAACGCAAACAAGCAGTATCGCCCAAAAGGCGGTACTGCTGCCTGCATCAACTATCTGTTCTGATACATATCCTCATAATATTTCTGATAATCACCGCTGGTAACATTCTTCATCCAGTCCTCGTGCTCGAAAAACCACGCGATCGTCTTGCGGATGCCGTCCTCGAACTTTGTCTCCGGCTCCCAGCCTACCTCTGCCTTGATCTTGTCCGGTGCAATTGCATAGCGTCTGTCATGTCCCTTGCGGTCTGCCACGTAAGTGATCAGATCTTTGCTTACCAGCTTTCTTCTCGGATCGTCCGCCGGAAGCATCTCCTGTAAGGTATCAATAATAATCTCAATAATCTGGATATTCTGTTTTTCGTTGTGTCCTCCGATGTTGTAAGTCTCACCGAGGCGTCCCTTTTCCTGCACCATATCGATGCCCTTCGCGTGGTCGTCGACATACAGCCAGTCACGCACATTCTTACCGTCGCCGTACACCGGAAGCTTCTTGCCCTGCAGTGCATTGTTGATGATCAGCGGGATCAGCTTCTCCGGGAACTGGTACGGTCCGTAATTGTTGGAGCAGTTTGTGATGTTCGCCGGGAACTTGTAAGTATCAATGTATGCCTTTACCAACATATCTGAGGATGCCTTGCTGGCTGAATACGGGCTGTGTGGTGCGTACGGAGTCGTCTCATAAAAATAAGATCCGTCATCCTCCAGGGAGCCGTACACCTCATCCGTCGATACGTGTAAAAACTTCTTGTCCGCCTTAAATGTTCCGTCCGGAAGTTCCCATGCCGCCTTGGCGCAGTTTAACATCACTGCCGTTCCGAGCACGTTCGTCTTCACGAAGACCTCCGGATTCTTGATACTGCGGTCTACATGGCTCTCTGCAGCGAAGTGAACCACACGGTCAATGTCGTTCTCCGCGAAAATCTTCGCAATGGCTTCCTTATCCGTAATGTCCGCCCGGATAAACGTATAATTTGGATTGTTCTCAATGTCCTTCAGGTTCTCAAGGTTTCCTGCATACGTGAGAACATCCACATTGATAATGCGGATCGCATCTCCGTATTTGCGAAACATGTAGTGAATGTAATTAGAACCGATAAAACCGGCTCCCCCTGTTACCAAATAAGTTCTCATCTCAACCTCCATTTATTTTCAATACTTGCAGTCTCTATTATCCATGGCCGTTTCACTGCCATAAGTCTCTTCATTTTATCATAGATTCCGTTCCAGCACAAGCTTGTGTATACACAGACCACCACATCGCCTCTACCACCAGTCTGTCCGCATCTGCTCCTTAATCTCCGACAGCCGCACGACAACACAATCCTCCGTCACCAGAACCGATCCCTCTTCCGGGAAATCGTTCATCTGTCCCGCCAGTTCCACCGCACGCTTCTTCTGCTCTTCCGTCGCATCTTCCCGCAGCACATTGCCAGTGTAAGCCTGTACAAATCCGCAGATGCGGTGTGTCGTACCGGTCGGATTCTCCATGCTGTAATCCCAGCCATAGAACGACCATCCATACATCTCAGTCCGCCTGCACCACTCTGGGAGATCCGCCTCCTGATACCCGACAAACACTACCGGAAGCCGCGGCAGTTCCCCTCCGTCTGCCCCGGCAAGGCATTCTAACAGCTGCTGTGTCTTTTGCTCATCCTCCCTGCAGCGCATCTCATCTGTCACGGTAAGACGCAGATCGTAACTCACCTGAACCGCAATCGCAACGCAGATACACACTCTGCAGACGAACAGCAGCCAGTAACCCGTACCATGGTCTCTTGCATCCCAGAGTTCCGCCAGTCGTTCCGTCACATACATTCCCAGGAACGCTCCCGCCACCGGAAGTGCAAACTGTGATCTTGTCACGATCATCTCCCCCATGTATGCCGTCAGAAGCAGCGGCGTAAGCACAAGTCCCGCGAGCCCCAGCAATGCATACACGATCTTTTTCTTCTCCCACGGAAGATTCCGCTTTTTCCGGCAGGCAAACGCGCTCCCAGCAAGCACAAGCAGGAGAATTACACCACATCCGTAAAAAGAGAAGTTTCTGGGTCCATGGCCGAGCAGCAGATTTTTCAGCGTGCGCAGCACATTCTTGATACATGCGAGCACAGGCAGCCTTCCCCAGCCCATCTGGCTGTCCATATAATCCGAAGACACCAGAAACGTGCTCATATACCAGTGATAGCACAGATACACCACACCGAAATGTGCGATCATCCAGAGGATCTGCCTGAGGTATCCGTCCTTCTTTTGCTCCGCGGTCAGCTCCGCCAGGAAGAAAACCAGGCACACTGCGACATAATAAACCGCCAGCGCCTGATACGCTCCAAGTCCGATAAACAGCAGAACACCCGCCGCAAATGCCCGAAGCAGATTCATTACGGTTCCGGTGCCGATTCCGGTCATCAGAAACGCCGCTGCAATCAACAGCAGCATTGCAAGCGCCACCTCCGCCTGCTGCAGGGAAAAGTAAATCTGATAACACCAGATGTTGGACGTTGCATAAAGGAGCAGGAAAATCCAGTACCGGCTTTTCTTTTTCCCGGAACGCTCATAAATGCCGAACGTCAGGAAATTGGCTCCCAGCCAGAAAAACAGAAAGAACAATACCCCGCTTTTTATGACCTGATGTGTGCCAAGCCCCAGAAGGCGCTTGAGCCACGCCAGCTCCCACCGTCCGATCGCAAGCCATCCCAGACTGCTTCCCGGGTGATTGATTAACTCTTCTGTATCAATGCGGATATTTCCGCAAAAAACAAGACAACCGAAACAGATCAGCATTGCCGCCATTGACGCAGCAAGCAGCCCCCAGTATTTTCTCACATAGTCATGCAAATCCCGCATTACAACACTTTTCATCCGTTCCGGTTATCCTTTCACTTTTCTGTCGGTATCTCTCTCAGCCCAAATGCTGCATATATTCATCCAGCGCGCTCTCCCAGTCAGCCATACGATAGCCGTCCGTCAGGCGCATCATGTAATTATCCAGAATGGAATACGCCGGTCTTTTCGCTGAAGCAGGATTCATCGCTGCATACTCCTCGCTGGTCACATGTCTGACGCAGGTATTCTTCCCGGCACGCGCAAATACCGCCTCCGCAAATGCTGCCCAGTTGGTATCTCCCTCGCAGGTTGCATGAAACAGTCCATAATTCTCCGTCGGTTCATAGTGATGAATCGCACGCGCAAGTTCCACTGCGCTGGTCGGTGAACCGAGCTGATCGCATACCACGCTCACTTCCTCATGGTTCTCCGACAGTCTTAACATTGTCTTGGCAAAATTTTTGCCGTCCCCGTACAGCCATGCCGTGCGGAAGATAAAATATTTTCTTGCGAACGCCTTCACGAAGCGCTCTCCTTCAAGCTTTGTTTTCCCGTATGCGCTGACCGGGCCCGGCTCATCGAATTCCGTATACGGTCTCGTCCCGTTTCCGGCGAACACATAATCCGTGGACACATGTATCAGCTTTGCGTCGACTTCCGCAGCAGCGATGGCAAGGTTGCGCGGACCGATCGCGTTGATGCGGTACGCTGCATCCCACTGTGTCTCACAGGCATCCACATTCGTGTGCGCCGCACAGTTGATGATAACCTGCGGACGCTCGGCGCGGACAAGCGCCAGCACGGCATCCACATCGGCGATGTCAAGTGCTGTGACACCATCGCCCTCCACCACATCTGTGTTGATAAACGTTACGTCTTCCTTTGCATACTCTGCGCGGATTGCGCGCCCCAGCTGACCGTTACAGCCGGTAACCAGTATCTTTTTCATCCGGTTTTCCTCTCTTACTCTTCTATTCTCCAAGTCCGTTCTCAATGGCATGCACAAGCGCCGCAAGCGCTTCCTGTTCGTCTTCCCCCTCGCATACCAGCTCAATCTCATCGCCCGATTTGATGCATGCACCGAGCACACTCAACACGCTCTTGGCATTTGCAGTATTCTCGCGGTATCGGAATGTGATGTGCGATTTGAACTGCATCGCCTCCTTGCACAGGATTCCCGCCGGTCTAAGATGCAGTCCCGTTGGATTCTTGACTGTGACTTTCTGACTTACCATGCTCTCTTCCCTCCAATGAATAATTTTCCTAACAAATCCTCTGACTCTACAACATAATGCGCGTAATCAATTCCGCAAGTCTCTTCGCTTCCTCGTCAATGACTTTCTGATCTTTCCCCTCAATCATAACGCGCACCAACGGCTCGGTACCGGACGGCCGGATCAGCACGCGTCCCTCACCGTTAAACTTTTTCTCCAGTTCTGTGATTGCATCCGCAATCTCCGGATACTCCATAAAATGCTCTTTTTTGTGATTCGGCACCTTGGCATTGACAAGCGCCTGCGGCAGAACCTCCATGATCGCTGCCAGCTCTGACAACGGCTTTCCGGTGTCCACCATCACTTCCAGAAGATGCAGGGCGCTCAAAAGCCCATCTCCGGTCGTATTGTCATCCAGGAAAATAACGTGTCCGGACTGCTCACCTCCGATATTGTATCCGTGTTCCCGCATGTTCTCCAGAACATACCGGTCTCCGACTTTTGTTTTCTCTACGTGGATTCCCTCTTTTTCTCCCATCAGAGTAAATCCCAGGTTGCTCATGATCGTCACAACAATCGTATTCTTCTTCAGTCTGCCCTTCTGCTTCATGTAGTTGCCGCAGATTGCCATCACCTGATCGCCGTCTACCAGATTGCCCTTTTCGTCAACCGCAAGCATACGATCCGCATCGCCGTCAAACGCGATACCGGCATCCGCCTTCTCGTACACAACGCGTGCCTTCAGCTCATCCATGTGGGTAGATCCGCAGTTCGCATTGATGTTGGTTCCGTCCGGGTCGGTGTGAATCGCCACCAGTTCCGCACCAAGATCGCTGAGCGCCTTGACGGACGTGTAATACGACGCGCCCTCCGCGCAGTCCACCACGATCTTTTTGCCGTGCAGATCGACCGGAACACATTTTTCCATAAATTTCACGTATTCATCCTTCAGATCAAAGCGGTATTCGATCTTTCCCACGCCGGATCCGATCGGAAGTACCACGTCCTTCATGTTGTTGCGGATCAGCGCTTCAATCTCATCCTCCAGTGCATCGGAAAGCTTGTAGCCCTCGCCGTTGAAGAACTTGATTCCGTTAAATTCCATCGGATTGTGCGATGCCGAGATCACAACACCCGCATCTACTTTATGCTTTCTTGTCAGATAGGCAATCGCCGGCGTCGGCATAACCCCCACAAAAATGGCGTTTGCACCCACGGAGCAGATTCCCGCCATCAACGCGCTGGCAAGCATTCCTCCCGATATTCTGGTATCGCATCCGACAATGATTGTCGCCTGATGTTCCGTCTCTTTCGTCAGCACATACGCGCCTGCCTGCCCAAGCTTGGTTGCCAGTTCGATCGTCAGTTCCGATCCCGCCACGCCACGCACGCCATCCGTGCCAAACATTCTAGCCAT

Protein sequences of DBSCAN-SWA_2

>NC_015977|2694571:2703753|2698347_2699430_-|WP_014080594.1|DBSCAN-SWA
MRTYLVTGGAGFIGSNYIHYMFRKYGDAIRIINVDVLTYAGNLENLKDIENNPNYTFIRADITDKEAIAKIFAENDIDRVVHFAAESHVDRSIKNPEVFVKTNVLGTAVMLNCAKAAWELPDGTFKADKKFLHVSTDEVYGSLEDDGSYFYETTPYAPHSPYSASKASSDMLVKAYIDTYKFPANITNCSNNYGPYQFPEKLIPLIINNALQGKKLPVYGDGKNVRDWLYVDDHAKGIDMVQEKGRLGETYNIGGHNEKQNIQIIEIIIDTLQEMLPADDPRRKLVSKDLITYVADRKGHDRRYAIAPDKIKAEVGWEPETKFEDGIRKTIAWFFEHEDWMKNVTSGDYQKYYEDMYQNR
>NC_015977|2694571:2703753|2696750_2697332_-|WP_014080592.1|DBSCAN-SWA
MGKIKVTENCNGIEGLKVIEPAVFGDARGYFMETYNYNDFAEAGIDCQFVQDNQSASKKGVLRGLHFQINYPQDKLVRVVNGEVFDVAVDLREGSKTFGKWYGVLLSAENKKQFFVPKNFAHGFIVLSEEAEFCYKVTDFYHPNDEGGILWNDAEVGVEWPMPEGMTAADLILSDKDKVQKSFAEYKAAHGIK
>NC_015977|2694571:2703753|2699562_2701158_-|WP_014080595.1|DBSCAN-SWA
MKSVVMRDLHDYVRKYWGLLAASMAAMLICFGCLVFCGNIRIDTEELINHPGSSLGWLAIGRWELAWLKRLLGLGTHQVIKSGVLFFLFFWLGANFLTFGIYERSGKKKSRYWIFLLLYATSNIWCYQIYFSLQQAEVALAMLLLIAAAFLMTGIGTGTVMNLLRAFAAGVLLFIGLGAYQALAVYYVAVCLVFFLAELTAEQKKDGYLRQILWMIAHFGVVYLCYHWYMSTFLVSSDYMDSQMGWGRLPVLACIKNVLRTLKNLLLGHGPRNFSFYGCGVILLLVLAGSAFACRKKRNLPWEKKKIVYALLGLAGLVLTPLLLTAYMGEMIVTRSQFALPVAGAFLGMYVTERLAELWDARDHGTGYWLLFVCRVCICVAIAVQVSYDLRLTVTDEMRCREDEQKTQQLLECLAGADGGELPRLPVVFVGYQEADLPEWCRRTEMYGWSFYGWDYSMENPTGTTHRICGFVQAYTGNVLREDATEEQKKRAVELAGQMNDFPEEGSVLVTEDCVVVRLSEIKEQMRTDWW
>NC_015977|2694571:2703753|2695867_2696701_-|WP_014080591.1|DBSCAN-SWA
MAGKKKDTSLLHHLIGSRSLVWNLAKNDIKKKFAGSYFGVVWAFVQPVITVLLYWFVFEKGLNSKATDLRTGIEIPFVLWLTAGLVPWFYFQEALNGGTGVLVEYSYLVKKVVFQIDMLPVVKMISALFTHLFFVAFTIVLFICMGYMPDWYALQVIYYSFCMILFATGLVYATSAVTVFFRDMKEVVGILLQIGMWVTPIMWNFETMVQIPGWAIAVLKLNPMYYIVSGYRNALINHIGFWEDMGLTVYFWVVTAVLLFLGTTVFKKLRPHFADVL
>NC_015977|2694571:2703753|2702093_2702357_-|WP_014080597.1|DBSCAN-SWA
MVSQKVTVKNPTGLHLRPAGILCKEAMQFKSHITFRYRENTANAKSVLSVLGACIKSGDEIELVCEGEDEQEALAALVHAIENGLGE
>NC_015977|2694571:2703753|2702403_2703753_-|WP_044024690.1|DBSCAN-SWA
MARMFGTDGVRGVAGSELTIELATKLGQAGAYVLTKETEHQATIIVGCDTRISGGMLASALMAGICSVGANAIFVGVMPTPAIAYLTRKHKVDAGVVISASHNPMEFNGIKFFNGEGYKLSDALEDEIEALIRNNMKDVVLPIGSGVGKIEYRFDLKDEYVKFMEKCVPVDLHGKKIVVDCAEGASYYTSVKALSDLGAELVAIHTDPDGTNINANCGSTHMDELKARVVYEKADAGIAFDGDADRMLAVDEKGNLVDGDQVMAICGNYMKQKGRLKKNTIVVTIMSNLGFTLMGEKEGIHVEKTKVGDRYVLENMREHGYNIGGEQSGHVIFLDDNTTGDGLLSALHLLEVMVDTGKPLSELAAIMEVLPQALVNAKVPNHKKEHFMEYPEIADAITELEKKFNGEGRVLIRPSGTEPLVRVMIEGKDQKVIDEEAKRLAELITRIML
>NC_015977|2694571:2703753|2697335_2698214_-|WP_014080593.1|DBSCAN-SWA
MKGIILAGGSGTRLYPLTKAISKQIMPVYDKPMIYYPLSTLMLAGIREVLIISTPRDLPVFEELFGDGSQLGMSFSYAVQEQPRGLADAFIIGEKFIGNDAVALVLGDNIFYGQSFSKVLKSAAERTEKEQGATIFGYYVRDPREYGVVEFDENGKALSIEEKPEHPKSNYAVPGLYFYDNNVVEIAKNVKPSARGEIEITSVNNAYLERGTLSVETLGRGFAWLDTGNHDMLLAAADFVSAFQKRQGLYISCIEEIAYKRGFIDRDQLIKLAQPLLKTDYGKYLMEIAEGL
>NC_015977|2694571:2703753|2694571_2695849_-|WP_014080590.1|DBSCAN-SWA
MDELAIRVEDVSKVYRLYNRPSERLFDALGLAGKGRFKEHRALDHVTFDVKKGETVGIIGTNGSGKSTILKIITGVLSPTSGEVEIDGRISALLELGAGFNMEYTGIENVYLNGMMLGFSREEMDARLDDILKFADIGEFVNQPCKTYSSGMFVRLAFAVAINIDPEILIVDEALSVGDVFFQAKCYKKFEDFKAEGKTIIFVSHDISSVAKYCDRVILLNKGVKLSEGNPKDTINLYKKVLLNQSQNIASGQVLADAKENGTKKLWKSNYELNPQVNEYGTGEAEIIDFAVIDEYGSYTSCIQKGTSFTIRSKVQFHTDIQDPIFTYTFKTVQGTAVTGTNTMYEKVGVGLARAGEIYVASFKQNMDLQGGEYLLSISCTGYVGGEFRAYHRLYDVVGVTVISDKNTVGFYDMNSETTVERVEE
>NC_015977|2694571:2703753|2701198_2702071_-|WP_014080596.1|DBSCAN-SWA
MKKILVTGCNGQLGRAIRAEYAKEDVTFINTDVVEGDGVTALDIADVDAVLALVRAERPQVIINCAAHTNVDACETQWDAAYRINAIGPRNLAIAAAEVDAKLIHVSTDYVFAGNGTRPYTEFDEPGPVSAYGKTKLEGERFVKAFARKYFIFRTAWLYGDGKNFAKTMLRLSENHEEVSVVCDQLGSPTSAVELARAIHHYEPTENYGLFHATCEGDTNWAAFAEAVFARAGKNTCVRHVTSEEYAAMNPASAKRPAYSILDNYMMRLTDGYRMADWESALDEYMQHLG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014080590.1|2694571_2695849_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.1e-16	28.4
WP_014080591.1|2695867_2696701_-	ABC transporter permease	NA	NA	NA	NA
WP_014080592.1|2696750_2697332_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.6e-43	49.7
WP_014080593.1|2697335_2698214_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.2e-105	62.5
WP_014080594.1|2698347_2699430_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.5e-79	47.1
WP_014080595.1|2699562_2701158_-	glucosyltransferase domain-containing protein	NA	NA	NA	NA
WP_014080596.1|2701198_2702071_-	dTDP-4-dehydrorhamnose reductase	H9NCE8	Sphingomonas_phage	1.9e-05	27.7
WP_014080597.1|2702093_2702357_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_044024690.1|2702403_2703753_-	phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	3.5e-22	25.4