CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016010	Xanthomonas axonopodis pv. citrumelo F1, complete sequence	2 crisprs	cas3,WYL,DEDDh,csa3,DinG	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016010_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016010_1

1563412-1563493

Orphan

Consensus_repeat	Method
GCTTTTCCGGGTCCCGGGTCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016010_1

>merge|NC_016010|1|1563412-1563493|CRISPRCasFinder
GCTTTTCCGGGTCCCGGGTCCCGACCTCTAAAGCGGCACCACCAACCTGCCCACTTGCAGCTGTTCCGGGTCCCGGGTCCCG

>NC_016010|1|1|1563412-1563493|CRISPRCasFinder
GCTTTTCCGGGTCCCGGGTCCCG	ACCTCTAAAGCGGCACCACCAACCTGCCCACTTGCA
GCTGTTCCGGGTCCCGGGTCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016010.1\|WP_014089748.1\|1572009_1573200_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NC_016010.1\|WP_011346894.1\|1574026_1574785_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|237831
NC_016010.1\|WP_014089739.1\|1556477_1556924_+\|CopD-family-protein	unknown	unknown	gnl\|CDD\|224892
NC_016010.1\|WP_014089740.1\|1557667_1558423_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227044
NC_016010.1\|WP_003485378.1\|1566305_1566764_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NC_016010.1\|WP_011346889.1\|1565488_1566280_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NC_016010.1\|WP_008578281.1\|1568186_1570553_-\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NC_016010.1\|WP_008578266.1\|1554192_1555536_-\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NC_016010.1\|WP_014089746.1\|1566760_1567774_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858
NC_016010.1\|WP_014089747.1\|1570636_1571983_-\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|182723
NC_016010.1\|WP_014089742.1\|1559630_1563221_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554
NC_016010.1\|WP_014089745.1\|1564172_1565459_-\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NC_016010.1\|WP_014089741.1\|1558480_1559440_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NC_016010.1\|WP_005921623.1\|1574802_1575360_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NC_016010.1\|WP_008578263.1\|1550861_1552415_-\|alginate-export-family-protein	unknown	unknown	gnl\|CDD\|372583
NC_016010.1\|WP_014089749.1\|1573202_1574030_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NC_016010.1\|WP_011346884.1\|1557128_1557578_-\|hypothetical-protein	unknown	unknown	unknown
NC_016010.1\|WP_011346883.1\|1555801_1556404_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369778
NC_016010.1\|WP_014089737.1\|1553146_1554064_+\|sensor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379374
NC_016010.1\|WP_008578264.1\|1552787_1553150_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609

Protein	Function_ID	Function_description	E-value
NC_016010.1\|WP_011346894.1\|1574026_1574785_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|237831	PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional.	1.15908e-162
NC_016010.1\|WP_014089739.1\|1556477_1556924_+\|CopD-family-protein	gnl\|CDD\|224892	COG1981, COG1981, Predicted membrane protein [Function unknown].	3.6193e-43
NC_016010.1\|WP_014089740.1\|1557667_1558423_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227044	COG4700, COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown].	3.69135e-59
NC_016010.1\|WP_003485378.1\|1566305_1566764_-\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	3.06233e-81
NC_016010.1\|WP_011346889.1\|1565488_1566280_-\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	7.89975e-151
NC_016010.1\|WP_008578281.1\|1568186_1570553_-\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_016010.1\|WP_008578266.1\|1554192_1555536_-\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	0
NC_016010.1\|WP_014089746.1\|1566760_1567774_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	5.21265e-173
NC_016010.1\|WP_014089747.1\|1570636_1571983_-\|RIP-metalloprotease-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	3.29489e-123
NC_016010.1\|WP_014089742.1\|1559630_1563221_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
NC_016010.1\|WP_014089745.1\|1564172_1565459_-\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	0
NC_016010.1\|WP_014089741.1\|1558480_1559440_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NC_016010.1\|WP_005921623.1\|1574802_1575360_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	6.32291e-105
NC_016010.1\|WP_008578263.1\|1550861_1552415_-\|alginate-export-family-protein	gnl\|CDD\|372583	pfam13372, Alginate_exp, Alginate export. This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.	1.29105e-31
NC_016010.1\|WP_014089749.1\|1573202_1574030_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	4.50259e-66
NC_016010.1\|WP_014089748.1\|1572009_1573200_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NC_016010.1\|WP_011346883.1\|1555801_1556404_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	7.62064e-07
NC_016010.1\|WP_014089737.1\|1553146_1554064_+\|sensor-domain-containing-protein	gnl\|CDD\|379374	pfam13796, Sensor, Putative sensor. This family is often found at the N-terminus of proteins containing pfam07730 and pfam02518. The N-termini of proteins containing these two domains often function in stimulus sensing.	8.46726e-32
NC_016010.1\|WP_008578264.1\|1552787_1553150_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.38706e-18

>NC_016010.1|WP_014089742.1|1559630_1563221_-|DNA-polymerase-III-subunit-alpha
MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALVKFYKAAEGVGIKPIAGADVMIATPDMTPWRMTLLCRDREGYLSLSRLLTRAWMEGHRPEGGVAIHPEWLQAGHANLFALAGRDSLAGRLFNEGRADLAEQQLADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEARVCISSGRVLDDPKRPREYSNQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLPAYPVPEDETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQEQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTRVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKILASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILIVKGGLREDEFNGGYSLRIRQCWDYEQICADHAQRLSLRLDLREKQAFKRIDALLAKHRPGKTPLRLDLLLRAPSGGVAGMLDLNGNHSVRIDQQLMDGLRADPAVRTVKIKYSPPWA
>NC_016010.1|WP_014089741.1|1558480_1559440_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MNPNYLDFEQPIADLEAKIQELRKASTGPAVNVETEVRALRDKLRVRTAQIFRDLSAWQVSQLARHPQRPYTLDYIDTICDEFQELAGDRAYADDRAIVGGLGRIDGRPVVIIGHQKGRDTKTKVARNFGMPRPEGYRKALRLMKLAERFRLPLLTFIDTPGAYPGIGAEERGQSEAIARNLLEMAELKIPVICTVIGEGGSGGALAIGVGDRTLMLEYGTYSVISPEGCASILWKDAAKAKDAAEQLGLTAKRLKGLGLVDKVIREPTGGAHRNPEQMGKRLKAVLLNELDALEKIPVDALLQQRYERLRSYGAYEGH
>NC_016010.1|WP_014089740.1|1557667_1558423_-|tetratricopeptide-repeat-protein
MSPLLLISLLLQAACCVHVVRSGRPLYWIFLLLAFSLLAVLVYVCVAVIPDLRNDPNARRRLKRIRSTLDPQREQRDASRRLDVADTPENRRQLAETLLARGDYAQAAEHYQGALRGLYRDDPHLMLGLAKAQFGLGQPQQTRQTLDALIAANPSFRSHDGHLLYARAVEGSGDTEAALHEYETLAQGYSGEEARVRYAQLLQRIARNDQARAVYEQVLRHAAASPKHYQREQRAWVDLARKGLRELDTSA
>NC_016010.1|WP_011346884.1|1557128_1557578_-|hypothetical-protein
MQRKPEIEAVLKAEIDHLLEQSTQRFRSGALAESLALGLQAWALIPEPKANWDYYPQSLSASFVKDYADLHDQENVHRWIEVMALMYDDPDHTDHLVLMTEGEAMLQLGDEARACAAFGKIHALYGKKGFAGHQKRYLEMLLKPHPTGA
>NC_016010.1|WP_014089739.1|1556477_1556924_+|CopD-family-protein
MTLYLWIKTFHLLFVIAWMAAVFYLPRILVNIAEAGSDTAVRARLVLMGLRLYTFGHSMLGLALLLGAVLWQGYRVIPDFPTMVAGGWLHAKLFAVALILAHYIVSGRWVKGAEQGRAVPSGRALRWFNEAPVILLVGVIWLVLAKPF
>NC_016010.1|WP_011346883.1|1555801_1556404_-|class-I-SAM-dependent-methyltransferase
MQQSAPKQYDAHYFRRWYRDAGLADPARLRRKVALAVAQAEYYLERPIRSVLDVGCGEAAWRAPLLALRPKLSYLGFDSSAYAVQRYGRSRQIHPARFGDFAWLRPCAPVDLLICSDVLHYVPTREFNQGLPGLAEMCAGVAFLEAFAEEDAFEGDHDGFQARPARWYRKRFASVGFAALGSHCWLSPQLADQASALERG
>NC_016010.1|WP_008578266.1|1554192_1555536_-|polyhydroxyalkanoate-depolymerase
MLRGSKTARMGGMLYQLHELTRNLLAPWVHQAQANAKMFSDPDSLWASLPGAERMAASNELFHRLGKEYEKPAWALDDVEVDGHSLPIIEREVLSKPFCRLLRFKRFSDHVELIGKMKEQPAVLVVAPLSGHHATLLRDTVRTLLRNHKVYVTDWVDARMVPLEAGAFRLEDYITYIQEFIRHIGAERLHVVSVCQPTVPVLAAVSLMASNDEPTPRSLVMMGGPIDARRSPTQVNNLATENGIEWFQNNLIHTVPFPYPGHGRQVYPGFLQHAGFLSMNPNRHVMSHWDFYTDLVKGDLQDAQAHRQFYDEYNAVLDMPAEYYLDTIRVVFQEFLLPQGKWKVDGQLVKPSAIRNTALLSIEGELDDIAGLGQTEAVHDLCTGIDAAHRRHLVVEGAGHYGIFSGRRWREVVYPQVREFIARYDADPVGSRDLATVTPIRKRGKRA
>NC_016010.1|WP_014089737.1|1553146_1554064_+|sensor-domain-containing-protein
MNTIAQAHPLPTTIGDYLLQLRQALSGADPAMIQDALYDAEEYLRSELAEQQGKSEAEVIAGVASSYGAPEEVAEIYRETEVTVARALRPPVPPQRASWIGTFFGVAADPRTYGALFYMLLSLLTGVFYFTWVVTGASLSVGMLILIIGVPLLVLFFGSVRVLSLVEGRVVETLLGVRMPRRPQHPGLQGGWLQRIGAMFTDARTWSTMLYFLLMLPLGIVYFTVFCTLLSLSLGLAASPIAALFDKVAVLTWDGVDITSAWLTLPLFAVGVLLLFVTLHLARAFGKLHGMFAKQLLVRSGEAAA
>NC_016010.1|WP_008578264.1|1552787_1553150_+|PadR-family-transcriptional-regulator
MSEPDIHLRKFQKELSAGTVSLALLAVLAQADAPLYGYLIAKRLERLEGVLSGKQSALYPVLRNLEGAGLLHSHVEPSASGPPRRYYRITDSGRDCLRDWTAAWRATRDSVDSVLEGTHS
>NC_016010.1|WP_008578263.1|1550861_1552415_-|alginate-export-family-protein
MQMTRLAQPAMADTSFGATRRLCLAIGLALPGLGLAQVQPAPTNAEQAVAEPAKAPVTAAPATAKGYPLEAQGWGAKQGGNMWQVRWAEDWSYLKDPSKRKSPFDPLKYIPLNDDGDVYVSLSNELRVRSNTITNPGLIPGSHSQQQYLLRAFFGADFHVGEHFRLYTELAHGSLDGRNEGTKTGTQENNAILQQVFFDVKGRIGSADTGLRVGRQVFVDGPTTLMALRDNTDIFVTFNGARAWAIGDRTRVDLFDFNFNIDGTEGLGDDRIDRSRHFRGVVGGYRLATAKPMYLEPFFYQFRNDNQVWGRQTAEENRNYYGLRLWGNVGKLRTDSFVTVQRGSFGGRDLRAYMASTSNAWSLSESGWKPRLGFHSEIASGGGGTSGTGTLRNNNFLYGNTIYFSWATFFGPVNLVTAAPTLTFSPTSKLTVNLEWETLWRQTTSDAIYNNQARAYARTQNTGERRIGTMPRINATWNIDPNWSVTFRAEHLMAGPALEKAGYGDSTFVMGWLNFRF
>NC_016010.1|WP_014089745.1|1564172_1565459_-|lipid-A-disaccharide-synthase
MDGQRNGASVGSDPTALPIPHSPLPIPGAHARPPRIALIAGEASGDILGAGLIEQLRLRYPNAEFVGIGGDAMRGVGCQTWFDASELAVMGLTEVLRHLPRLLKLRSAFRERVLAWKPDVFIGIDAPDFNLPVERWLKQRGIKTVHYVSPSVWAWREKRAEKIGVSADLVLCLFPMEPPIYARHGVDARFVGHPMADDIAYQADRAAARATLGLSASSTVLAVLPGSRHGEISRLGDTFFQAAWLVSEHLPNLHVLVPAANPGCKQLLAEQLSRSSLPVMRSHLLDGQARTAMLAADVVLLASGTATLEAMLVKRPMVVGYKVAPLTYRIVKLLGLLKVNRYALPNILANDDLAPELMQDDCTPERLCVALLDWFKHPDKVAALQPRYLALHAQLRRDASARAADAVAGLLEGRDSEVGIGDSAGAKA
>NC_016010.1|WP_011346889.1|1565488_1566280_-|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MRDSTPLIHPTAVIDPSATLADDVRVGAFSLIGADVQIGAGTEVGPHCSIHGPTRIGRNNRFIGHAAIGGEPQDKKYAGERTELVIGDGNVIREFVTINRGTGGGGGVTVVGNDNWMLAYTHVAHDCHVGNHCVFSNNTTLAGHVTVGDYVIISGFAGAHQFCRIGAHAFLGMGALTNGDVPPFTMVGSDSLGRPRGINSEGLKRRGFDAERITAIKRAYRTLYVAGLPLADAKLQLAEQAKSSEDVRGMLEFIEAAERPLLR
>NC_016010.1|WP_003485378.1|1566305_1566764_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MSHHVYELPIDVSQIQTLLPHRYPFLLVDRILELDLETKWIVAQKNVSINEPFFQGHFPNRPVMPGVLIIEALAQVGGVMTQLGLGRDALSQLFYMVKVDKARFNKQVVPGDVLIMEVQMKRLIRNVGCFYGEAKVDGEVVASAEVMCAGAR
>NC_016010.1|WP_014089746.1|1566760_1567774_-|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MRLTASAIAEQFGLTVVGDGTTEVSGVATLAHAGAGQLSFLSNPRYRPQLADTQAAVVVLRADDADAAKGTVLVAKDPYTAFAKIAALFDVAPVREPGIHASAVIDPTAQVSATAHVGPFVSIGARSRVGDGCVIGTGSIIGEDCVVDEGSELLARVTLVTRVRLGKRVRIHPGAVIGADGFGLAMDAGHWIKVPQLGGVVIGDDCEIGANTCIDRGALEDTVLEEDVRVDNLVQIAHNCRIGAHSAIAGCTGIAGSAKIGRYCLLGGHVGVVGHLEICDKVVITGKSVVRNSIHEPGEYSSGTPLTDNRTWRKNAARFKQLDVLARRILAVGKEKE
>NC_016010.1|WP_008578281.1|1568186_1570553_-|outer-membrane-protein-assembly-factor-BamA
MTRLPTRRLLALALAAGLSLPAVALAVEPFVASDIRVDGLQRIASGTVFTYLPVNRGDTVDDAKVADAIRALYRTGFFEDVQLDRQGNILVITVKERPAINKLTVTGNKDIKSEELLKGLGDIGLSEGGTFDRLSLDRVTQELTRQYNNRGKYNVEITPTVSPLDRNRVDVAIAIKEGKAAKIRHVNLIGTEKFANEDILDNWESKEHNWASWYRRDDQYSKEKMSGDLEKLNSWYLDRGYVDFSIDSTQVSISPDKRDMFISAGVTEGEQYKISEIKVTGDTVLPQADIERLVIPKAGDIFSRALLEYTSDAITNTLSNVGYAFAKVNPIPTPNREDRTVAVNLQVVPGPRVTVRRILYKGNSRTSDEVLRREMRQFENTWYSQAAIDRSKIRLQRLGYFESVDVETPAVPGSNDQVDVVYNVKETTSGSFVFGLGYSQSFGVTTSVQLSQNNFLGGGNRVAVEASRSSYQQRYAFSYTNPFFTDDGVSLGYNLSWRALDYSDFNTAQFNSKNGSAQVVFGVPITENDTVSAMVGIDSNQITTFAGTTPQAIIDYINAIGTRTFHAWRTELGWARDTRNDFFMPTRGMYQRVGLETTLPGSTVEYYKLNYQISNYWPIIPALVLNTRFELGYGDSYGKDSTRVLTNPDGSTRTVTATGLPFYENFYAGGTNSVRGFEDNTLGPRSEAINGFTRGQPLGGSFKTVGSVEMYFPKLFDSPSARVSAFVDFGNVYNGVDNFKANELRASTGVALLWRAPVGPISISYAFPLKKEDNDEIERLQFTFGGQF
>NC_016010.1|WP_014089747.1|1570636_1571983_-|RIP-metalloprotease-RseP
MGDFIGSVWWMIVSLGVLVTFHEFGHFWVARRCGVKVLRFSVGFGKPLWMRRNRHGTEFVVAAIPLGGYVKMLDEREGDVHPAEQGQAFNRKTVWQRIAIVAAGPIANLLLCMAMLWAMFVVGKQDYSATIGRADGLAAEAGLGPGERIVRIDGRSVSSWSDASMQLTTAAMDRRDVRVLTASDAAGSSEHTLRLSQLPVGFDERRVAALAGIGWQFMLQPPVIAEVVKGSVADGLLKPGDRIVAIDGQPIRSAEDIIPQVQALGAHGGPGMIEVARGEDRLALEIAPRKSPQGQWMIGVRPAAAPAPEYDSRQQYGLFAAVPAAIRETGRMTADSLGMMKRMLTGQASVKNISGPVTIARAANASAERGLDWFLYFLGLLSLSLAIINLMPIPILDGGHLLYYLIELIKGSPISERAMIAGQYVGLAVLAGLMGLAFYNDILGLVPR
>NC_016010.1|WP_014089748.1|1572009_1573200_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MAGSSLRQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDELLAMCATHRPAHAVIADAALYPALRDGLRALGLATQAHAGAEALDALASGDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTAAAAGAEIIPIDSEHSAIFQCLRSCDASRGVRRVILTASGGPFRGRDRAALAAVTPAQAVAHPKWSMGPKISVDSATLMNKGLEVIEAHHLFGLPGEQIDVLVHPQSLVHSLVEFVDGSTLAQLGLPDMRTTLAVGLAWPERVDSGVGGLDLLRQGRLDFEAPDTAAFPCLRLAWDALRAGGTAPAILNAANEVAVSAFLQGQVGFLAIPALVEHTLTTLPRHNADSLDTLLFADAQARQITERALAHHALHA
>NC_016010.1|WP_014089749.1|1573202_1574030_-|phosphatidate-cytidylyltransferase
MTKTRVIAALIMAPLAICAIVLLPTQWLAALAAVLFLTGLWEWLKLSGIDDSLPRTVLLTLNLLLMVLMVWASAGSMVLFQIASLVGVAWWLLALLWLRFFTFGADHGNGQARALKLAAGTLAVLPAWAALVLLHASPDKGNLWLLTALTMVWAADSGAYFAGRAFGKHKLAPRVSPNKTIEGLLGGLIAGIAVACAFGWLAGLTLAHVPQLVLVSALAVLASVLGDLFESLLKRHAGAKDSGTLIPGHGGVLDRIDGVLAALPVFALGKEILGF
>NC_016010.1|WP_011346894.1|1574026_1574785_-|di-trans,poly-cis-decaprenylcistransferase
MHPVPSAAVPRHIAIIMDGNGRWAQRRRRPRMIGHRAGARAVNRTIDFCLEKGVSALTLFAFSSENWGRPQDEVDALMKLFLHALDREVEELQRRGVQVRFIGDRSRFAAPLRERMAGAERSTATNSRLVLSIAASYGGRQDIAAAARALAEDVAAGRLQPEQIDEALLSSRVALADLPAPDLFIRTGGDTRISNFLLWQLAYTELWFTETLWPEFDAGVLQQALDDFAGRERRFGLTSAQIADKATESSSA
>NC_016010.1|WP_005921623.1|1574802_1575360_-|ribosome-recycling-factor
MLTQIKQDAQTRMTKSIDALRHSLTTIRTGRASPALLDGIKVKAYGADTPLNQVASISVSEGRSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDSKVAIRNIRRDANQQVKDLLKDKAVTEDEARSAEDDIQKLTDKAIKDVDEVVKGKEQELMTV

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Crispr_ID: NC_016010_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016010_2

1708608-1708728

Orphan

Consensus_repeat	Method
CATCGCCGGAACCCAC	PILER-CR

2 spacers

The CRISPR arrays of NC_016010_2

>merge|NC_016010|2|1708608-1708728|PILER-CR
CATCGCCGGAACCCACCTTGGCGGTCACGCGGCCCTTGGTGTGACGAATGGTCATGTCGCCCGAACCCACGTCGGCGCTCACTGCGGCGGCCCCGTTGATCTGCGCATCGCCGGAACCCAC

>NC_016010|2|1|1708608-1708728|PILER-CR
CATCGCCGGAACCCAC	CTTGGCGGTCACGCGGCCCTTGGTGTGACGAATGGTCA
TGTCGCCCGAACCCAC	GTCGGCGCTCACTGCGGCGGCCCCGTTGATCTGCG
CATCGCCGGAACCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016010.1\|WP_014089812.1\|1706921_1707344_-\|hypothetical-protein	unknown	unknown	unknown
NC_016010.1\|WP_008576520.1\|1712348_1713320_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NC_016010.1\|WP_011346973.1\|1703788_1705111_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NC_016010.1\|WP_008576524.1\|1714687_1714924_+\|protein-SlyX	unknown	unknown	gnl\|CDD\|179141
NC_016010.1\|WP_014089813.1\|1707710_1708247_-\|DUF2884-family-protein	unknown	unknown	gnl\|CDD\|378556
NC_016010.1\|WP_014089809.1\|1701262_1702630_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NC_016010.1\|WP_014089808.1\|1698779_1700273_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369647
NC_016010.1\|WP_005913764.1\|1710087_1710963_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_016010.1\|WP_014089818.1\|1716007_1716853_+\|transporter	unknown	unknown	gnl\|CDD\|379259
NC_016010.1\|WP_011346970.1\|1700518_1701019_-\|DUF3060-domain-containing-protein	unknown	unknown	gnl\|CDD\|371435
NC_016010.1\|WP_014089816.1\|1713345_1714695_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NC_016010.1\|WP_029819115.1\|1714924_1715677_+\|DUF2058-family-protein	unknown	unknown	gnl\|CDD\|225664
NC_016010.1\|WP_011346979.1\|1711705_1712263_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NC_016010.1\|WP_014089810.1\|1702794_1703778_+\|CAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|349398
NC_016010.1\|WP_074053199.1\|1711324_1711573_-\|hypothetical-protein	unknown	unknown	unknown
NC_016010.1\|WP_003483692.1\|1710959_1711322_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NC_016010.1\|WP_029819103.1\|1694844_1697748_-\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NC_016010.1\|WP_014089811.1\|1705394_1706792_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NC_016010.1\|WP_014089815.1\|1709104_1710091_-\|hypothetical-protein	unknown	unknown	unknown
NC_016010.1\|WP_014089807.1\|1697853_1698783_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326

Protein	Function_ID	Function_description	E-value
NC_016010.1\|WP_008576520.1\|1712348_1713320_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	1.53779e-68
NC_016010.1\|WP_011346973.1\|1703788_1705111_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	3.86985e-121
NC_016010.1\|WP_008576524.1\|1714687_1714924_+\|protein-SlyX	gnl\|CDD\|179141	PRK00846, PRK00846, hypothetical protein; Provisional.	3.64875e-37
NC_016010.1\|WP_005913764.1\|1710087_1710963_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.78513e-58
NC_016010.1\|WP_014089809.1\|1701262_1702630_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NC_016010.1\|WP_014089808.1\|1698779_1700273_-\|cupin-domain-containing-protein	gnl\|CDD\|369647	pfam08007, Cupin_4, Cupin superfamily protein. This family contains many hypothetical proteins that belong to the cupin superfamily.	7.38735e-122
NC_016010.1\|WP_014089813.1\|1707710_1708247_-\|DUF2884-family-protein	gnl\|CDD\|378556	pfam11101, DUF2884, Protein of unknown function (DUF2884). Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.	9.18787e-12
NC_016010.1\|WP_014089818.1\|1716007_1716853_+\|transporter	gnl\|CDD\|379259	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation.	5.5911e-11
NC_016010.1\|WP_011346970.1\|1700518_1701019_-\|DUF3060-domain-containing-protein	gnl\|CDD\|371435	pfam11259, DUF3060, Protein of unknown function (DUF3060). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.	2.83665e-09
NC_016010.1\|WP_029819115.1\|1714924_1715677_+\|DUF2058-family-protein	gnl\|CDD\|225664	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown].	1.14622e-46
NC_016010.1\|WP_011346979.1\|1711705_1712263_+\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	4.76526e-78
NC_016010.1\|WP_014089810.1\|1702794_1703778_+\|CAP-domain-containing-protein	gnl\|CDD\|349398	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins. Little is known about bacterial and archaeal members of the CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family. The wider family of CAP domain containing proteins includes plant pathogenesis-related protein 1 (PR-1), cysteine-rich secretory proteins (CRISPs), and allergen 5 from vespid venom, among others. Studies of eukaryotic proteins show that CAP domains have several functions, including the binding of cholesterol, lipids and heparan sulfate. This group includes Borrelia burgdorferi outer surface protein BB0689, which does not bind to cholesterol, lipids, or heparan sulfate, and whose function is unknown.	2.78831e-09
NC_016010.1\|WP_003483692.1\|1710959_1711322_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	3.34567e-30
NC_016010.1\|WP_029819103.1\|1694844_1697748_-\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NC_016010.1\|WP_014089811.1\|1705394_1706792_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NC_016010.1\|WP_014089816.1\|1713345_1714695_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NC_016010.1\|WP_014089807.1\|1697853_1698783_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.80629e-10

>NC_016010.1|WP_014089813.1|1707710_1708247_-|DUF2884-family-protein
MLMKLLVSAVVMSVLLAGCGKSEPTVNVSSQANGAGVTFTGKSLTLKRDGLPAATIGVDGALSIDGKPVDLNEAQRQAMRSYYAQVQGVAKKGIDIGTQGAAFGAHAAGEAIKGVLSGNSDQIGDKIEAEADTFKHKALQICDQLATLRTAQDAAAHLVPAFAPYSTLTQHDIDDCRK
>NC_016010.1|WP_014089812.1|1706921_1707344_-|hypothetical-protein
MNKFVMLCMALLLCTLAACGDQSSRRAERGKPRVAVTTQSVMIRRPPAANAEITPDGTLKIDDIALPQKEATRAKLQLLFGHLQMLRQQAVNEAGPDPEYKSIKLTATPQIQTLSGELLDEIPSLQPYRESFSNLQAERH
>NC_016010.1|WP_014089811.1|1705394_1706792_+|class-II-fumarate-hydratase
MSERFRTEHDSMGELQVPADALWGAQTQRAVQNFPVSGQPMPRGFIRALGLIKAATAGVNAELGLLPKSIGKTVQAAALQVAEGRFDAQFPIDVYQTGSGTSSNMNANEVIATLATRAGKDAVHPNDHVNLGQSSNDVVPTAIRVSALLAVQEHLQPALKHLRKTIDKRAKSLDKIVKTGRTHLMDAMPLTFGQEFGAWSAQLSSAQERIDDALKRLRRLPLGGTAIGTGINADPRFGGKVAKALSSLSGARFESAENKFEGLAAQDDAVELSGQLNALAVALIKIANDLRWMNAGPLAGLGEIELPALQPGSSIMPGKVNPVIPEATVMACAQVIGHHTAITIAGQTGNFQLNVTLPLIAYNLLDSINLLGNVSRLLADTAIAGLKVRQERVREALDRNPILVTALNPIIGYEKAAAIAKRAYKEQRPVLDVAKEDSGLGEAELRRLLDPAALTRGGIQAGGGG
>NC_016010.1|WP_011346973.1|1703788_1705111_-|HlyC/CorC-family-transporter
MLGNVLLLLVALLLVLLNGFFVAAEFALVKLRHTQAVGLAQTNGWRGRLLLGVHAHLDAYLSACQLGITLASLGLGWVGEPAFAHLLQPLFDTLGLSPEAAQFTALAIAFSLISFLHIVLGELAPKTMAIRRPERMSLWTAAPLYVFYWLMYPAIWVLNTSANRFLRLLGWGEVEHHSHRYSREELMLIVGRQDPNAAAPDQGLALMSHALELPDLVAGDLMRPREHLRSLREGMTLEAVLAEFSESRYSRYPWFDADGEKVLGILHTKDLLVAMARGQNLDDLRPLLRPPTVLTLETPIPNALEQFRAGTTHLALCVEEEGRILGFFTLEDLLEVVVGDIEDEHRHVVRDAPIRGQDGSLLVAGSTSIFRLERLLGQDLSAPDHVNSVGGLILYQLQRLPEEGETLELDGHLLTVRRMAGHRIQAVTVRPVGEAVDAAS
>NC_016010.1|WP_014089810.1|1702794_1703778_+|CAP-domain-containing-protein
MVELPALFRPAMRPIFARLAFAILPAALPATAQDADFAAQAAALYRTRPAIAGCRAGELQPAQRQRVLALINDIRRLHGLDAVDDDPAAEPDATQAALVIAANGRLSHTPTPDWRCYSDSAAKGARRSLIYGGVSSPLLRFSSADEIVIEWLTDANNVSAGGLGHRRWLLDPFLQRVAFGMVAGRDGAAFSSGAALRLVPTVGVAARTREDFVAWPIGEYPGRYYADDALLSFTALPDRKRKFANRDVDYADAQVEIRARDGRQLQVRNMSEDHEGFGVPNSLQFRVPRLQPGVIYDVTIRGVRFGGQSRDYRYWFRIGQSPRASTE
>NC_016010.1|WP_014089809.1|1701262_1702630_-|adenylosuccinate-lyase
MSDSALLALSPLDGRYASKVDALRPIFSEYGLIKARVKVEIEWLLALAAEPGIAELAPFSPAAAQRLRALADDFSVAHAARVKEIERTTNHDVKAVEYFIKEQLKDDAELGPALEFVHFACTSEDINNLSYGLMLEQARREMLLPSLDGITAALRTLAHAQAAQPMLSRTHGQTASPTTLGKEIANVVARLERQRKQIAAVELTGKINGAVGNYNAHLVSYPDLDWAAFAQRFVESLGLVFNPYTTQIEPHDNVAEIGDASRRANTILIDLARDIWGYISLGYFKQKLKEGEVGSSTMPHKVNPIDFENAEGNLGIANALFEHFSAKLPISRWQRDLTDSTVLRALGTAFGHTQVALDSLAKGLGKLTVNPERLDADLDAAWEVLAEAVQTVMRRHGLPNPYEQLKALTRGQGITAASMQAFVENLQLPEDDKQRLRALTPGAYTGLAEQLARAI
>NC_016010.1|WP_011346970.1|1700518_1701019_-|DUF3060-domain-containing-protein
MRVTHTALTLLTLGSVLALSGCGGDGPAAQAPSAVSNTLTDPASGADCAGKDVRLTRNDSEWILHGECGTVTITASRGAMNLDTARSIRLEGSNFTVLNQQLGQLSVSGHDNTLNLTDVDRVDIQGNKNLVLARAVKQVRFSGNDNTVNPSSKPVLDDRGSGNKVM
>NC_016010.1|WP_014089808.1|1698779_1700273_-|cupin-domain-containing-protein
MAVRKATPLAIEVQARPGQPLGMPVERFLRNYWHKHPLLIRNAFADFASPLQPEDLAGLACEDGVLARLISHDRATDGWDVRTGPFQETDFPGLPDHDWTLLVQDVDKWDADVRALLEHFRFLPRWRIDDIMISFAATGGSVGAHVDHYDVFLLQGQGHRRWQIDARTVQGRKATPLAFRDDVELKLLREFKPTHDWMLGPGDMLYLPPLIPHHGVAEDACLTFSIGTRAPSSAELIGDYLDTLIADADEAVRYHDEDLKVPADPYEIDVTAMNRVVAALNALRMNDPDRLGDWFGRFMTTYRASGDVVPAPEPIPREAVEQALEEGVLLHRHPWSRLAWRRAKRGATLFCSGLEFALSAKDASRLAAAEEIDGTLYAQLSPRGREVVLELLAQGHYQRAHEDAEDDIADDDHAHALSVSADHDDQDADDDAPEADGDIDADADVEQVAASADTPAEALEADVEPGDAAEAEDEQDVDSAIADETDSDDSDDATKPA
>NC_016010.1|WP_014089807.1|1697853_1698783_-|GNAT-family-N-acetyltransferase
MSAHARPQIVTLDPAADAAALRALRPACATDTAGDTSGVEWDALDPLSLHLAARTDDGQLIASVRLTADRRLDRLGVLPDWRRRGVADQLLAAAVDAARQHGWPGLHACSTPAAEAVFARQGFLPDAPPLSPERIGQARDAPGTVVHRRLDGPMAVDTFTAALAATTGLLCAARRQVLIYTRALDPPLFDNAAVLDALRRFATARHDKRVHILVQDTASAAASCSAMLRLAQRLPSVFRFRAVSDPVDASFASAYVVGDDAYYFRPTGHRFDDGETWLSGAARSRQLEREFAQIWERSALWNEPRALGI
>NC_016010.1|WP_029819103.1|1694844_1697748_-|2-oxoglutarate-dehydrogenase-E1-component
MRPTDGASRPAASAQSSPQQTRLTIVDNLLKQFAQSSQLAGGNAAYIEDLYEQYLVAPDSVDPKWKSYFDGFEGRGAGDVPHSAAIAHILTASKQAANAGTGAGASDERERNVGRLITAYRARGHLGAQLDPLGLVPPVNPPDLDLPFHSLSQADLDSEFSTGGVGGQPRMKLKDLLTRLKATYASSIGAEFMHIQEFDQRQWIYKRLEDAGGKIAGDAASRKRTLERLTAAEGLERYLHTKYVGQKRFSLEGGDSLIPMMDEIIRQSGNDQVKDIVIGMAHRGRLNVLVNTLGKNPRKLFDEFEGKFEHAHDDRAHTGDVKYHMGFSADIAVGTDKQVHLALAFNPSHLEIVDPVVVGSVRSRQERFGDAERKSVLPILIHGDAAFAGQGVVMELFQMSQARGFAVGGTVHIVVNNQIGFTTSTRDDARSTLYCTDVAKMIGAPVFHVNGDDPDAVMFVSKLAYEFRQQFKKDVVIDLVCYRRWGHNEADEPAATQPVMYQTIRKHKTTRELYAAKLESEGVLSADEAKALVDGYRNKLDSGEYTTELAKRKPDEFAIDWSKYLVGTAADPVDTRVKRDQLDRLAKLITTIPEGVELHARVAKIYEDRVKMAAGDQPGDWGFAENLAYATLLAEGHKLRLVGQDAGRGTFFHRHAILHDQKTDDYYLPLRQLVQNPEDATVIDSLLSEEAVMGFEYGYSTTDPNALCIWEAQFGDFANGAQVVIDQFIAAGEAKWGRIAGLSLFLPHGYEGQGPEHSSARLERFLQLCALENMLVCVPTTPAQCFHMIRRQMRMTTRKPLVVMTPKSLLRHKLAVSSLEELADGQFQHLIPDAKADAAKVKRVVLCSGKVYYDLLEDQTKRGQDDVAIVRIEQLYPFPRAQLAAELKAYGNATDVVWCQEEPQNQGAWYQIRHHLNFCLAGGQSLHYAGRARSPSPAAGHMADHIIEQQKLVADALLNPFNDQVAE
>NC_016010.1|WP_014089815.1|1709104_1710091_-|hypothetical-protein
MNAVTNQASPARTFAWLLKREYWEHRGGFVWAQFITGGIAVFFALLGAVIGAISARRNMVGDSITMDDLAEYTRTLGQVGDGLLLGGIGIASVVLAFVVFFYALGSLYDDRRDRSVLFWKSLPVSDVQTVLSKAAWALLLAPLISIAIGAAVGMALWLIAIVGALIAGVPSPWALATHSHPFSLLWLLLKTVPMSLLWALPTVGWLMFCSAWANSKPFLWAVLFPLLACVMLSILSAMPGVSLPIGWIWYIVGYRGLLSALPGTWSPLAVSGNLDSSTLQSPSDLVQWALQHTESTRVYGSADIWIGAAVGIALIAASIYLRRRRSEA
>NC_016010.1|WP_005913764.1|1710087_1710963_-|ABC-transporter-ATP-binding-protein
MTAVSSDHVVDARGLRKAYKHRLALDNTSFTIAAGRIIGLIGPNGAGKTTALKAVLGLTDFAGELQVLGMDPRTQRNALMNEVCFIADVAVLPRWLRVGEAIDFVAGVHPRFDRAKCERFLANTQLNRKSRVRELSKGMIVQLHLALVMAIDARILVLDEPTLGLDILYRKQFYQRLLEDYFDEQKTIIVTTHQVEEIEHILTDVMFIRDGRIVLTADMESVSERYTEVLVGADQLDAARALKPIDERGLPFGKTVMLFDGAPKEQLARFGETRNPGLADLFVAVMKGTYA
>NC_016010.1|WP_003483692.1|1710959_1711322_-|GntR-family-transcriptional-regulator
MNDIQWSDGAPIYRQLKERVIAMMLDGILKPGDALPSVRQVAADYQLNPITVSRAYQELADENLVEKRRGLGMFMTPEAAQKLRGSERERFLNEEWPAVLERIQRLGLSIDDLLPQGKTP
>NC_016010.1|WP_074053199.1|1711324_1711573_-|hypothetical-protein
MNSTRLTRPVPLLLFGSTLFAIGCLGAASSQVTESGADYGVSEAVTENATTPPEARSRPGRHVRASLSMPYFSFAQALRPRS
>NC_016010.1|WP_011346979.1|1711705_1712263_+|glutathione-peroxidase
MLLNRLLALVLTGFFATSAFAAGTPVLDVEYRPLAGKTPINLNRTYGGKVVMVVNTASKCGFTPQYEGLEALNQRFGSRGFTVLGFPSNDFQGQEPGSEKQIQEFCTLTYGVKFPMFEKVHVLGAQATPLYQRLTQATGVAPGWNFHKYLISRDGRVVAQFPSKIKPDDPSVLAAIERELKAPAH
>NC_016010.1|WP_008576520.1|1712348_1713320_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MKMGKRGAAASLLMVAMSASMPAMSQQPAAAATKEKPALNASSDKSTREDVSYAIGMDVARSFEPIAQDIDVNAMQRAIENAFKGGKPLLSDEQTQATDTALRTALAARNGQQVPGMAPGAAPAAPSKENVGLMLGDRAVGPSLAGIKDEIDLSILMEAVRTVFAKGTTRLTQQEAAATMQAFASAKQGAAAANNRKQGNEFLAKNKTEKGVITTASGLQYMVLRQGSGERPMRTSKVRVNYEGKLLNGQVFDSSYQRGQPAEFGLDQVIPGWTEGVALMPVGSKYRFWIPSNLAYGPNGTQGGPIGPDATLTFDVELMGILP
>NC_016010.1|WP_014089816.1|1713345_1714695_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MRVAIFGTGYVGLVTGACLAEVGHQVVCVDIDQAKLDALNRGLIPIYEPGLEPMVKANHAAGRLRFTSDAAAAIAHGEITFIAVGTPADQDGSADLQYVLAVARTVGRHIDGPAIVVNKSTVPVGTADIVRVAIQEELDARGVDHEFDVVSNPEFLKEGDAVADCMRPDRIVIGAKKPAAIARMRRLYAPFNRNRDRIVEMDVRSAELTKYAANAMLATKISFMNEIANIAERVGADVEQVRNGIGSDPRIGWHFIYPGAGYGGSCFPKDVQALAKTAEQYGMRPTLLEAVESVNNAQKGHLFELVQRHYCAEGAGNLAGKTFAVWGLAFKPNTDDMRAASSRRLMEQLWEAGATVRAYDPEATREARRIFGERDDLAYCDDAFSALEGADALVVVTEWKQFRSPDFGKIKQALKDDVVFDGRNLYDPQEIEAAGLAYYAIGRGRSLYA
>NC_016010.1|WP_008576524.1|1714687_1714924_+|protein-SlyX
MHEQLPLHDRALEARLIELETRLSFQEQALNELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADAADEPPPPHY
>NC_016010.1|WP_029819115.1|1714924_1715677_+|DUF2058-family-protein
MQIAAAMSDTLRDQLLGLGFKSAPKPERKPDARPAARAHGNGGKPAPGGNRPGQGRGPQRPHAAASTDGNGERKPAGRPERRHDGKPGAAPRPQHAAADRHGPRPARTREDIDLAKAYAIRAQREKDERIEAERVKQEEARLRREAKAKLEALVKDKGLNDAAADIARHFPYGGKIKRIYVTADQLKALNAGELGVLQLNGRYLLVTAELLAEAEAVFAPSVALKVDPNAPAGDDPYADPKYQVPDDLVW
>NC_016010.1|WP_014089818.1|1716007_1716853_+|transporter
MVLHMSLSSKFLKSNVVAAVDSRALSRVPVQAPRRTASALVMLALCVASGHAAAQADDAPAFDRPGIPFAAEALQPGAFAWEQGLPDASTDRSDGQRTTQYTADTLLRLGLFQNVELQLGSDSYNWQHGGGMRVRGGGDSSVGLKVALPSRSESFHWAALGTYSIPTGSPAFSDGYSRELGVTASWDLAQQRAIALYVNYARDDDGHTWTFAPNYTFFSGDHFSSYVEAGVDTGSAHSRVAGAGGAWQLPHAMQLDVSVLRGLTSESPDWQGGIGLSIAFE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016010_2	2.2\|1708678\|35\|NC_016010\|PILER-CR	1708678-1708712	35	NZ_CP020333	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM170, complete sequence	127336-127370	10	0.714

1. spacer 2.2|1708678|35|NC_016010|PILER-CR matches to NZ_CP020333 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM170, complete sequence) position: , mismatch: 10, identity: 0.714

gtcggcgctcactgcggcggccccgttgatctgcg	CRISPR spacer
aagtttgctcacttcggcggccacgttgatctctg	Protospacer
.    .******* ******** ********* .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2406035 : 2444630

Enterobacteria_phage(20.0%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008571949.1\|2406035_2406539_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_014090191.1\|2406541_2408419_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_014090192.1\|2408382_2409393_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_014090193.1\|2409425_2412164_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	3.1e-78	29.1
WP_041469633.1\|2412175_2412625_+	hypothetical protein	NA	NA	NA	NA
WP_014090194.1\|2412816_2413365_+	hypothetical protein	NA	NA	NA	NA
WP_008577832.1\|2413572_2414115_+	hypothetical protein	NA	NA	NA	NA
WP_041469634.1\|2414481_2414724_+	hypothetical protein	NA	NA	NA	NA
WP_014090196.1\|2414750_2414924_+	hypothetical protein	NA	NA	NA	NA
WP_014090197.1\|2415104_2415674_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_014090198.1\|2415849_2417787_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.7e-41	28.4
WP_011347362.1\|2417795_2418335_+	hypothetical protein	NA	NA	NA	NA
WP_014090199.1\|2418331_2419717_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_014090200.1\|2419713_2421051_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_014090201.1\|2421052_2422369_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_014090202.1\|2422372_2425831_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_014090203.1\|2425827_2426490_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_014090204.1\|2426486_2427209_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_014090205.1\|2427205_2430109_+	protein kinase	A0A2R8FF19	Brazilian_cedratvirus	2.5e-09	25.0
WP_014090206.1\|2430105_2430432_+	hypothetical protein	NA	NA	NA	NA
WP_014090207.1\|2430600_2431629_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_014090208.1\|2431637_2432609_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_082244459.1\|2432722_2435182_-	two-component system VirA-like sensor kinase	W8CYF6	Bacillus_phage	1.2e-15	29.5
WP_014090210.1\|2435178_2436171_-	c-type cytochrome	NA	NA	NA	NA
WP_008575747.1\|2436167_2436947_-	response regulator transcription factor	NA	NA	NA	NA
WP_014090211.1\|2437347_2438175_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_104613822.1\|2439566_2440007_-	hypothetical protein	NA	NA	NA	NA
WP_094030629.1\|2440105_2441207_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.1e-45	42.9
WP_014090218.1\|2443667_2444630_+\|transposase	IS1595-like element IS1595 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

4055258 : 4063299

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014091077.1\|4055258_4056605_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.3e-32	26.9
WP_014091078.1\|4056651_4058055_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.3e-47	29.8
WP_014091079.1\|4058343_4059510_-	nucleotide sugar dehydrogenase	M1HV26	Paramecium_bursaria_Chlorella_virus	2.1e-116	57.6
WP_014091080.1\|4059850_4060750_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	4.5e-26	33.6
WP_014091081.1\|4060746_4061304_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.6e-44	49.4
WP_014091082.1\|4061300_4062188_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.9e-93	57.5
WP_014091083.1\|4062243_4063299_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.1e-82	47.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection