CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016041	Glaciecola nitratireducens FR1064, complete sequence	0 crisprs	WYL,cas3,DEDDh,DinG	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1035035 : 1095057

Clostridium_phage(25.0%)

protease,integrase

attL 1027915:1027964|attR 1059226:1059275

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1027915:1027964	attL	NA	NA	NA	NA
WP_014107958.1\|1035035_1035659_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF93	Clostridium_phage	5.5e-07	29.0
WP_148261688.1\|1036203_1036950_+	hypothetical protein	NA	NA	NA	NA
WP_014107960.1\|1037327_1038254_-	EamA family transporter	NA	NA	NA	NA
WP_014107961.1\|1038355_1039063_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014107962.1\|1039555_1039804_-	hypothetical protein	NA	NA	NA	NA
WP_014107963.1\|1039814_1040648_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014107964.1\|1040768_1041617_-	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_041246299.1\|1041792_1042182_+	hypothetical protein	NA	NA	NA	NA
WP_041246300.1\|1042178_1042622_+	hypothetical protein	NA	NA	NA	NA
WP_014107968.1\|1042890_1044051_+	amidohydrolase	NA	NA	NA	NA
WP_014107969.1\|1044043_1045207_+	YbdK family carboxylate-amine ligase	NA	NA	NA	NA
WP_014107970.1\|1045687_1047457_-	amidohydrolase	NA	NA	NA	NA
WP_014107972.1\|1048042_1048666_+\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF93	Clostridium_phage	5.5e-07	29.0
WP_014107973.1\|1049736_1050141_-	MAPEG family protein	NA	NA	NA	NA
WP_014107974.1\|1051066_1052302_+\|integrase	site-specific integrase	Q7Y5X7	Haemophilus_phage	1.9e-22	29.8
WP_049786923.1\|1052418_1052946_+	hypothetical protein	NA	NA	NA	NA
WP_014107976.1\|1053057_1053963_+	hypothetical protein	NA	NA	NA	NA
WP_014107977.1\|1054049_1054292_+	hypothetical protein	NA	NA	NA	NA
WP_083822412.1\|1054552_1056295_+	replication endonuclease	Q19US8	Mannheimia_phage	1.1e-84	38.7
WP_014107979.1\|1057173_1057803_+	hypothetical protein	NA	NA	NA	NA
WP_041246301.1\|1058322_1058871_-	hypothetical protein	NA	NA	NA	NA
WP_014107981.1\|1059610_1059940_+	hypothetical protein	NA	NA	NA	NA
1059226:1059275	attR	NA	NA	NA	NA
WP_014107982.1\|1059960_1060377_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_148261762.1\|1060387_1061119_+	LrgB family protein	NA	NA	NA	NA
WP_014107984.1\|1061266_1062253_+	response regulator	NA	NA	NA	NA
WP_014107985.1\|1062256_1062745_+	PAS domain-containing protein	NA	NA	NA	NA
WP_148261763.1\|1062900_1064568_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_014107987.1\|1064564_1065110_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_148261764.1\|1065247_1067317_+	response regulator	A0A1V0SGX0	Hokovirus	6.0e-58	30.7
WP_014107989.1\|1067318_1068551_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_014107990.1\|1068592_1069198_-	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_014107991.1\|1069198_1070470_-	ATP-dependent RNA helicase SrmB	A0A1V0SIR5	Klosneuvirus	2.9e-55	35.0
WP_041246302.1\|1070671_1071583_+	AAA family ATPase	NA	NA	NA	NA
WP_014107993.1\|1071575_1072760_+	general secretion pathway protein GspB	NA	NA	NA	NA
WP_014107994.1\|1072896_1073343_+	DUF1499 domain-containing protein	NA	NA	NA	NA
WP_014107995.1\|1073329_1074139_-	hypothetical protein	NA	NA	NA	NA
WP_014107996.1\|1074266_1075574_-	HD-GYP domain-containing protein	NA	NA	NA	NA
WP_014107997.1\|1075600_1076200_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_014107998.1\|1076201_1077602_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_014107999.1\|1077622_1078711_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_014108000.1\|1078712_1080290_-	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	6.1e-10	27.5
WP_014108002.1\|1080622_1082875_-	malate synthase G	NA	NA	NA	NA
WP_014108003.1\|1082991_1083945_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014108005.1\|1084231_1085833_-	isocitrate lyase	NA	NA	NA	NA
WP_014108006.1\|1086582_1087935_+	alkaline phosphatase	NA	NA	NA	NA
WP_014108007.1\|1087950_1088817_-\|protease	protease HtpX	NA	NA	NA	NA
WP_014108008.1\|1088958_1090347_-	carotenoid 1,2-hydratase	NA	NA	NA	NA
WP_148261765.1\|1090334_1092872_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_014108010.1\|1092939_1093656_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-21	29.4
WP_014108011.1\|1093714_1094413_-	hypothetical protein	NA	NA	NA	NA
WP_014108012.1\|1094493_1095057_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_2

1987195 : 1994428

Vibrio_phage(28.57%)

integrase

attL 1986983:1986997|attR 1995348:1995362

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1986983:1986997	attL	NA	NA	NA	NA
WP_014108787.1\|1987195_1988452_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.4e-70	39.9
WP_014108788.1\|1988453_1988909_+	hypothetical protein	NA	NA	NA	NA
WP_014108789.1\|1988905_1989139_-	hypothetical protein	NA	NA	NA	NA
WP_014108790.1\|1989173_1989404_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	3.5e-07	42.1
WP_014108791.1\|1989500_1989674_-	hypothetical protein	NA	NA	NA	NA
WP_014108792.1\|1989673_1990561_-	prohibitin family protein	R4VJU7	Alteromonas_phage	1.8e-67	52.0
WP_014108793.1\|1990563_1991253_-	dUTP diphosphatase	NA	NA	NA	NA
WP_014108794.1\|1991313_1992027_-	FAD-dependent thymidylate synthase	M4SL34	Vibrio_phage	5.8e-61	50.0
WP_014108795.1\|1992026_1992992_-	RnlB RNA ligase 2	A0A2H5BGP6	Vibrio_virus	9.0e-65	41.8
WP_014108796.1\|1992993_1993218_-	hypothetical protein	A0A2I7QTX7	Vibrio_phage	3.4e-07	44.0
WP_014108797.1\|1993220_1993370_-	hypothetical protein	NA	NA	NA	NA
WP_148261703.1\|1993366_1994428_-	oxidoreductase	A0A0F6N5T0	Escherichia_phage	1.2e-62	37.0
1995348:1995362	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2758433 : 2767715

Salmonella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041246411.1\|2758433_2759180_-	glycosyltransferase family 2 protein	B9UDL7	Salmonella_phage	8.9e-12	26.9
WP_041246831.1\|2759535_2760591_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.0e-118	63.8
WP_014109478.1\|2761022_2761649_-	CinA family protein	B5TK85	Pseudomonas_phage	8.5e-24	42.3
WP_014109479.1\|2761740_2764422_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	8.1e-39	23.2
WP_014109480.1\|2764696_2766325_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.1e-150	52.1
WP_014109481.1\|2766413_2767715_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.4e-131	57.7

DBSCAN-SWA_4

3438886 : 3445320

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014110054.1\|3438886_3440380_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	9.6e-98	39.9
WP_014110056.1\|3440491_3441559_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.4e-87	48.3
WP_014110057.1\|3441563_3442472_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-32	35.3
WP_014110058.1\|3442474_3443023_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	6.3e-47	50.0
WP_014110059.1\|3443025_3443907_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.0e-95	58.5
WP_041246457.1\|3444001_3444304_+	hypothetical protein	NA	NA	NA	NA
WP_014110061.1\|3444300_3445320_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	8.9e-87	48.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage