CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017306	Corynebacterium pseudotuberculosis 42/02-A, complete sequence	1 crisprs	DEDDh,cas3,WYL,cas4,csa3,DinG	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017306_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017306_1

1826933-1827021

Orphan

I-C,I-E,II-B

Consensus_repeat	Method
CTTTTCTCCGCGCACGCGGAGGTAGTTC	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NC_017306_1

>merge|NC_017306|1|1826933-1827021|CRISPRCasFinder
CTTTTCTCCGCGCACGCGGAGGTAGTTCCGGTGTTGGGTATGTATGCTGATCCGTCTGGTTCTTTTCTCCGCGCACGCGGAGGTAGTTC

>NC_017306|1|1|1826933-1827021|CRISPRCasFinder
CTTTTCTCCGCGCACGCGGAGGTAGTTC	CGGTGTTGGGTATGTATGCTGATCCGTCTGGTT
CTTTTCTCCGCGCACGCGGAGGTAGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017306.1\|WP_013242528.1\|1836286_1836520_-\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|131249
NC_017306.1\|WP_014367533.1\|1832855_1833341_+\|ferritin	unknown	unknown	gnl\|CDD\|153113
NC_017306.1\|WP_014401345.1\|1818425_1819319_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NC_017306.1\|WP_013242518.1\|1821433_1822792_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NC_017306.1\|WP_013242516.1\|1820297_1820834_-\|DUF2017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378185
NC_017306.1\|WP_014401348.1\|1827875_1828100_+\|hypothetical-protein	unknown	unknown	unknown
NC_017306.1\|WP_003852698.1\|1837001_1837124_-\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179138
NC_017306.1\|WP_014522462.1\|1827038_1827542_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379154
NC_017306.1\|WP_014300909.1\|1828401_1829037_+\|hypothetical-protein	unknown	unknown	unknown
NC_017306.1\|WP_014401346.1\|1824861_1825359_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_017306.1\|WP_013242517.1\|1820927_1821308_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_017306.1\|WP_013242521.1\|1825355_1826639_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_017306.1\|WP_032802570.1\|1816812_1817547_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NC_017306.1\|WP_014522873.1\|1822873_1824838_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_017306.1\|WP_013242526.1\|1833413_1835573_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236179
NC_017306.1\|WP_013242515.1\|1819392_1820211_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_017306.1\|WP_013242527.1\|1835723_1836161_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179603
NC_017306.1\|WP_013242513.1\|1817585_1818353_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NC_017306.1\|WP_013242523.1\|1829233_1830955_-\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238832
NC_017306.1\|WP_013242524.1\|1831423_1832410_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027

Protein	Function_ID	Function_description	E-value
NC_017306.1\|WP_013242528.1\|1836286_1836520_-\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	1.51252e-32
NC_017306.1\|WP_014367533.1\|1832855_1833341_+\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	3.42302e-58
NC_017306.1\|WP_014401345.1\|1818425_1819319_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	6.23933e-133
NC_017306.1\|WP_013242518.1\|1821433_1822792_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NC_017306.1\|WP_013242516.1\|1820297_1820834_-\|DUF2017-domain-containing-protein	gnl\|CDD\|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	1.38837e-72
NC_017306.1\|WP_003852698.1\|1837001_1837124_-\|50S-ribosomal-protein-L36	gnl\|CDD\|179138	PRK00831, rpmJ, 50S ribosomal protein L36; Validated.	1.69298e-09
NC_017306.1\|WP_014522462.1\|1827038_1827542_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379154	pfam13384, HTH_23, Homeodomain-like domain.	1.01835e-05
NC_017306.1\|WP_014401346.1\|1824861_1825359_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.53197e-23
NC_017306.1\|WP_013242517.1\|1820927_1821308_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	1.33955e-35
NC_017306.1\|WP_013242521.1\|1825355_1826639_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.02179e-94
NC_017306.1\|WP_032802570.1\|1816812_1817547_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	5.09274e-164
NC_017306.1\|WP_014522873.1\|1822873_1824838_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	5.22026e-153
NC_017306.1\|WP_013242526.1\|1833413_1835573_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236179	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NC_017306.1\|WP_013242515.1\|1819392_1820211_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	2.8809e-23
NC_017306.1\|WP_013242527.1\|1835723_1836161_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	2.30734e-77
NC_017306.1\|WP_013242513.1\|1817585_1818353_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	4.17064e-75
NC_017306.1\|WP_013242523.1\|1829233_1830955_-\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238832	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.	0
NC_017306.1\|WP_013242524.1\|1831423_1832410_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0

>NC_017306.1|WP_013242521.1|1825355_1826639_-|phosphoserine-phosphatase-SerB
MIELDQPQVTVSLRPELTPAVITISGQDRQGVSAAAFRVLAANGVQILDVEQSQFRGFLGLAVFAGVEASKVEILEIGLKETLKTYGQNVKIELQEVAQSSRPRSTHEVVILGNPVEAHDLSRVAQTLANFDANIDTIRGISDYPVTGLELKITVAKREPGAAMPLRKALAELTAELGVDIAIERAGLLRRSKRLICFDCDSTLITGEVIEMLAAHAGREKEVAEVTERAMSGELDFEESLRERVKALAGLDASVIGEVADSIELTPGARTTIRTLKRLGYKTAVVSGGFIQVLEELAEDLGLDYVRANTLEVVDGKLTGRVIGKIVDRAAKAEFLEEFARESGIEMHQTVAVGDGANDIDMISAAGLGIAFNAKPALREIADTSVNSPFLDEVLHMLGITRADIDAADDSEGKIRRVPLPQQKNEY
>NC_017306.1|WP_014401346.1|1824861_1825359_+|GNAT-family-N-acetyltransferase
MTAHVPTLSNDSVKLRPLLLSDAHDLTATCRDPLTQKYTTVPANYTFAMAEEFIKTEHDNLRWVITVPTSDRFCGQIELRSLATEHNAMNVGYMTAPWARGQGLMTSALLLAVDYAFSRSVRRIELQADSQNKASQRVAEKAGFILIDSSQDTMVYSLLADEYHS
>NC_017306.1|WP_014522873.1|1822873_1824838_+|ATP-dependent-DNA-helicase
MSDSPLALSTDELLDAAVAALGGSRRNGQVSMANAVTKALESERHLAVQAGTGTGKSLAYLVPALRHAQATDSTIIVSTATIALQRQLVERDLPRLADALEPHMSRRPTFAIMKGRANYVCMNKIAAAEEPEDALIDEEDLSWLGKHVARIYEWANETEVGDRDSLDPGVPDLAWRQVSVNAQECIGASRCPHGEECFAELARKKAHDVDVIVTNHALLAIDALSDVNVLPEHEVVIVDEAHELDGRITAVATNEIGVTALTMSSRRAGKLGAGEKDQKLIDIAKEWEDAMLAIEPGRLTSLPDYLKQQTVALRDAIWSLREHISRVPEGEAANDPERHAERMSLSNHLNDQHDSVIRVLSVFEEEDAASQEDVVWVLHDERRGVMIKVAPLSIAGLLHTRLFSENTVVLASATLNIGGNFNAMAASWGLPKGSWDSLDAGTPFNPATSGILYTPNSLPDPGRDGLSPEVLDEIYELIMAAGGRTLGLFSSRRAAQQATDAMRTRLPFDVLCQGDDTTGALVEKFSKQENTCLFGTLSLWQGVDVPGRSCSLVIIDRIPFPRPDDPLLQARKDAADADGRNGFMEVAATHAALLIAQGAGRLLRSVTDRGVVAILDRRIVTKRYGAFFIRSLPAFWRTNDPQVVRGALSRLVAR
>NC_017306.1|WP_013242518.1|1821433_1822792_+|nicotinate-phosphoribosyltransferase
MSCASALSVFKAKLVCVTEFESTALLTDMYELTMLQSALADGTASRSCTFEVFSRRLPNERRYGVVAGTARVLEAIKHYRFTEEQLASLTFLDATTIDFLRSYKFQGQIDGYREGELYFPSSPILTIRGTFAECVILETLILSIMNADSAVASAAARMVTAADGRPIFEMGSRRTHEYAAVTAARAAYLAGFVGTSNLEAVHRYGIPGSGTAAHAWTLLHVNDDGTPNESAAFQSQINVLGVGTTLLVDTYDIAKGVKTAIEVAGPQLGAVRIDSGDLGVMTRKVRQELDSLGAHNTGIVVSSDLDEYAIAGLRGNPVDAFGVGTSVVTGSGAPTAGMVYKLVEVDGHPVAKRSRGKAMVGGTKRAIRTHRATGTAVEEIVFPYDHDTPQIGQLNSYELAIPLMRNGIAVDNLPTLEESRAYLAEQLITLPWEGLALSKDEPVLSTRFIGFK
>NC_017306.1|WP_013242517.1|1820927_1821308_-|ATP-dependent-Clp-protease-adapter-ClpS
MQVKQEDVTHSLNELPSVVLAPTMDVVVSSPMATPELDEALSVDVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKRRAIELMMQVHTEGKAVVSSGERDKVEGDVKKLHTAGLWATMQQGG
>NC_017306.1|WP_013242516.1|1820297_1820834_-|DUF2017-domain-containing-protein
MQPWKKKKGLMRGVHFACVFEPMEREVLGNLASTVSEALIHRAQSAPKDELAELTGMPSGHKEAPKDPALARLLPDFEKEGDEEFEGDNSLLRCLHETDITRAKIEHLYVLGQALGPDGGVHVDITETEAHAWVAALNDIRLYVASGEVFGEDAEQDRESLVEWLAYNQESLLNAMMG
>NC_017306.1|WP_013242515.1|1819392_1820211_-|rhomboid-family-intramembrane-serine-protease
MSLRYFFTRLCFIMTNRFNPYAQSDKKTYGGVSTSGGYLPHEYGTQYLPTSDYPVNRAVQRGVKRTSLCSMGRKRLADATVLALGYVVVIWAVHIVNTVFFGGTLAQELGVHPLDGSSIWHIFTSPLVHGSYMHISANTLPGLIFVFLIGLSGRRPFWEVTMITAVVGGMGTWIFGGIGTTHIGASGLIYGWLAYLVVRGIFNKSFSQVVLGVVLAFMYGGLIWGVLPGDVGVSWQAHLFGAIGGLIAGATITSDDPPALKARREQQALHRV
>NC_017306.1|WP_014401345.1|1818425_1819319_-|glutamate-racemase
MAYVKKDLGADSLHPEAPSVKPSVVYEGTIDASSPIGIFDSGVGGLTVARAIMEQLPQESVIYIGDTANSPYGSKPIAQVRELSMRIGDELVARGCKMIVIACNTATSAALRDLRERYSIPVVGVILPAVRRAVAATRNGKIGVLGTQGTIASGAYQELFAASPGVEVYAQACPSFVSFVERGITSGRQILGVAQGYTEGLQSAGVDTLVLGCTHYPLLTGVIQLAVGDNVTLISSSEECVKDVLKVLSRNDMLAEATADKPPSRSFESTGDPALFEQLAMRFLGPHVTYVEKLREV
>NC_017306.1|WP_013242513.1|1817585_1818353_-|MBL-fold-metallo-hydrolase
MKLTILGSSGSLGAPDNAASGYLIQMDNAPSILMDMGPGVLAQLERAQNPSDAHVVFSHLHADHCVDFPSLLVWRRYHPTAAAKGRNLCFGPTDTPVRLGRLSADSVDNIDDMSDTFAFTPWQNAKEELVGAVSITPYSVVHPIESFALRVEHKRSGKVVAYSGDSSYTENLIECARDADVFLCEATWGETSEGKVPNMHMSGEEAGRIARIAGAKRLILVHIPPWGNAKAALEKARSEFDGPVDISYQGMEIHI
>NC_017306.1|WP_032802570.1|1816812_1817547_-|ribonuclease-PH
MTTSNFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEEDSRADVDMNVIMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQKAALGIA
>NC_017306.1|WP_014522462.1|1827038_1827542_-|helix-turn-helix-domain-containing-protein
MAKKHTFNKVIIDTIHATGITHTQAAEMFGVSTRWIRELLHRYNTGGYQALEPQSRCPHTSPRAITDDIIDSAGKVSLRWAGESEKLYIGTRYAGMPIILVCLNNKITAVNPETTEILGRYLLEKGRSYHRNLLKDPHQPNPDKKKSLETSNRNDVSRLHRKAPSGT
>NC_017306.1|WP_014401348.1|1827875_1828100_+|hypothetical-protein
MGSSSPCEGGGVLCYPQKINPRRIYIMDRAENTTEQVTPTLDHAAANASSQDKEPDTPPETFDRKYVETLTRGS
>NC_017306.1|WP_014300909.1|1828401_1829037_+|hypothetical-protein
MKKSKLFLCMALTTSLATASIPATAQESDPITKPWLFKKCEGFSVAIQSVHLKDKDQSRVPRWLRAKPNLGDTVKVQFKVTNNSYSNNADATYPKEEGNAYLVDDPLSVRNGVGVTIKPNPIYAWSNTDQKRNFILGRGDSVTVTYNHTITEQDLTNRGIPDGPNYPISNSGTATPVCTISPGITYSWSPLSHFFPWLAGFLRSITSFFSR
>NC_017306.1|WP_013242523.1|1829233_1830955_-|cytochrome-c-oxidase-subunit-I
MTAVAPRLEDYSEPTRPAPTGGARKGTLAWKMLTTTDHKQLGIMYIIMSFVFFFLGGLMALLIRAELFSPGLQYLSNEQFNQLFTMHGTVMLLLFGTPIVWGFANYILPLQIGAPDVAFPRLNAFGFWVTMIGAAAMLSGFLTPGGAADFGWTMYLPLADSIHSPGIGSDMWIVGVGATGVGTISSAINMITTILCMRAPGMTMFRMPIFCWNIFVASVLVLMIFPLLTAAALGVLYDRKLGGHLFDPGNGGAIMWQHLFWFFGHPEVYVLALPFFGIVSEIVPVFARKPMFGYIGLVFATLSIGSLSMAVWAHHMFVTGAILLPFFSFMTFLISVPTGVKFFNWLGTMWKGHVSWETPMTWTMGFLVTFLFGGLTGIMLASPPLDFHISDTYFVVAHFHYTLFGTVVFASFAGVYFWFPKMTGRMLDERLGKIHFWITFVGFHGTFLVQHWLGNEGMPRRYADYLDSDGFTTLNQISTIFSFLLGMSVLPFIWNVIKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTSLPRIRSERPAFELHYPHMVERMRREAHVGHHVEPVTVKAK
>NC_017306.1|WP_013242524.1|1831423_1832410_-|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MESYDSYLESHKKPVSAINWNSIPDEKDLEVWDRLTGNFWLPEKVPVSNDLKSWGTLNDLEKTTTMRVFTGLTMLDTIQGTVGAVSMIPDAITPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIVLSYYEGADPLKRKVASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQQAVREQTPERQEELKEYTFDLLYDLYDNEIQYTEDLYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPADECKVSPAILSALSPNADENHDFFSGSGSSYVIGKAENTTDDDWDF
>NC_017306.1|WP_014367533.1|1832855_1833341_+|ferritin
MSINEKLAAALNNQITAELEASMVYLQLSYILDDLSLTGMRNWMQAQHKEELDHAAQFSKHLLDRDYRPQIGDIAPPKLDANSAVEAFEASLAHEQKVTAMIRELAEIADSVKDYDSRPLIDRFLEEQIEEEANVKEILDRLRIADTGSGILRIDAELAER
>NC_017306.1|WP_013242526.1|1833413_1835573_-|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MSQSLGKHVAEPVSRTEQLDYHALNALLNLYNADGKIQFDKDREAANQFFLQHVNQNTVFFHDLEEKIEYLVENNYYEPGIIEKYEFAFIKDLFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGDQNLARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERVYGKAFADISVSEHYAEMVEDPRIRKSKINAREFFQTIAEIQFESGYPYIMFEDTVNKANPIEGRVNMSNLCSEILQVNTPSLFNDDLTYEEVGEDISCNLGSLNIAMTMDSPDFAKTIETAIRGLTAVSEQTAINSVPSIRKGNDAAHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYQCLVASNKLARERGRTFVGFETSKYATGEYFDGFDPADFAPKTEKVAKIFADSSIYTPTAADWADLKDSVAAHGLYNRYLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDNENLDYFADAYEIGFEKVIDTYAVATKYVDQGLSLTLFFKDSATTRDINRAQIYAWRKGIKTLYYIRLRQVALMGTEVEGCVSCML
>NC_017306.1|WP_013242527.1|1835723_1836161_-|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MLVVYFSSATENTKRFVQKLGFPAKRIPLHKSSPELVVDEPYVLVCPTYGGGASISGGNTRPVPAQVIRFLNNEHNRSLLRAVIAGGNSNFGLDFGKAGDTIAAKCKVPYVYRFELLGTDEDVRLVRDGLLGNAAALGLLPEPVA
>NC_017306.1|WP_013242528.1|1836286_1836520_-|glutaredoxin-like-protein-NrdH
MSITVYTKPACVQCNATKKALDRAGLDYTLVDISIDDEARDYVMALGYLQAPVVEVNGEHWSGFRPERISSLVAQVA
>NC_017306.1|WP_003852698.1|1837001_1837124_-|50S-ribosomal-protein-L36
MKVRKSLRSLKNKPGAQVVRRRGKVYVINKKDPRFKARQG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1743142 : 1814647

Agrobacterium_phage(18.18%)

protease,bacteriocin,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014522455.1\|1743142_1745878_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	3.5e-138	38.8
WP_013242455.1\|1746044_1747025_-	malate dehydrogenase	NA	NA	NA	NA
WP_013242456.1\|1747627_1748386_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_014401328.1\|1748444_1749731_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.1e-131	55.8
WP_014522456.1\|1749891_1752696_-	aminodeoxychorismate synthase component I	A0A0B5J984	Pandoravirus	6.6e-84	34.0
WP_013242459.1\|1752772_1753402_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.4e-37	43.5
WP_013242460.1\|1753417_1754017_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-42	48.3
WP_013242461.1\|1754227_1755580_-	trigger factor	NA	NA	NA	NA
WP_014300878.1\|1756366_1756609_+	hypothetical protein	A0A1W6JRB8	Corynebacterium_phage	3.9e-09	48.4
WP_013242463.1\|1756744_1757521_+	hypothetical protein	NA	NA	NA	NA
WP_013242464.1\|1757607_1758618_-	pirin family protein	NA	NA	NA	NA
WP_013242465.1\|1758735_1759209_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_014367467.1\|1759275_1759896_-	DsbA family protein	NA	NA	NA	NA
WP_014300883.1\|1763256_1763931_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_013242471.1\|1763953_1764346_+	globin	NA	NA	NA	NA
WP_013242472.1\|1764357_1765254_+	DMT family transporter	NA	NA	NA	NA
WP_013242473.1\|1765257_1765866_-	hypothetical protein	NA	NA	NA	NA
WP_013242474.1\|1765871_1766300_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_014522869.1\|1766505_1768176_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	1.3e-47	27.9
WP_013242476.1\|1768365_1768926_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_014300886.1\|1769454_1771209_+	hypothetical protein	NA	NA	NA	NA
WP_013242479.1\|1771205_1772744_+	YcaO-like family protein	NA	NA	NA	NA
WP_013242480.1\|1772770_1774249_+	nitroreductase family protein	NA	NA	NA	NA
WP_013242481.1\|1774245_1776849_+	lantibiotic dehydratase	NA	NA	NA	NA
WP_013242482.1\|1776848_1777862_+\|bacteriocin	thiopeptide-type bacteriocin biosynthesis protein	NA	NA	NA	NA
WP_013242483.1\|1777858_1778839_+	hypothetical protein	NA	NA	NA	NA
WP_014300888.1\|1778877_1779054_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_013242484.1\|1779126_1780578_+	YcaO-like family protein	NA	NA	NA	NA
WP_013242485.1\|1780599_1781358_-	permease	NA	NA	NA	NA
WP_013242486.1\|1781354_1782278_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.5e-19	26.1
WP_014401334.1\|1782368_1784414_-	bifunctional copper resistance protein CopD/cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_014367488.1\|1785006_1787292_+	carbon starvation protein A	NA	NA	NA	NA
WP_014401336.1\|1787311_1787512_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_013242489.1\|1787852_1789679_-	S8 family peptidase	A0A1B0T6A2	Bacillus_phage	3.0e-29	31.8
WP_013242490.1\|1789954_1790950_+	oxidoreductase	NA	NA	NA	NA
WP_013242491.1\|1791079_1791883_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_013242492.1\|1791948_1792608_+	oligoribonuclease	M4M9I5	Vibrio_phage	8.4e-22	35.0
WP_013242493.1\|1792787_1793615_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_014300895.1\|1793668_1794859_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_013242495.1\|1795642_1796641_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_014655718.1\|1796839_1797394_+	isochorismatase family protein	A0A2K9L2K0	Tupanvirus	5.2e-17	32.6
WP_014800825.1\|1797405_1797750_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_013242498.1\|1797873_1798149_-	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_013242499.1\|1798237_1798717_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_013242500.1\|1798754_1799408_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_013242501.1\|1799420_1799810_-	holo-ACP synthase	NA	NA	NA	NA
WP_014401339.1\|1799941_1809040_-	type I polyketide synthase	NA	NA	NA	NA
WP_013242503.1\|1809264_1809570_-	hypothetical protein	NA	NA	NA	NA
WP_013242504.1\|1809731_1810847_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_014522460.1\|1810843_1811470_+	response regulator transcription factor	NA	NA	NA	NA
WP_014300900.1\|1811513_1812545_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_014522251.1\|1812725_1813484_-	hypothetical protein	NA	NA	NA	NA
WP_014522461.1\|1813575_1813905_-	hypothetical protein	NA	NA	NA	NA
WP_013242508.1\|1813984_1814647_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

1957354 : 1965815

Pandoravirus(33.33%)

protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013242637.1\|1957354_1959103_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	1.7e-61	31.5
WP_013242638.1\|1959080_1959749_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_014300952.1\|1959756_1960143_-	hypothetical protein	NA	NA	NA	NA
WP_013242640.1\|1960139_1960679_-	hypothetical protein	NA	NA	NA	NA
WP_013242641.1\|1960665_1961112_-	DUF3180 domain-containing protein	NA	NA	NA	NA
WP_014300954.1\|1961108_1961564_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4W084	Pandoravirus	3.9e-10	34.5
WP_013242643.1\|1961565_1961907_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_013242644.1\|1961893_1962676_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.9e-20	32.2
WP_013242645.1\|1962677_1963241_-	GTP cyclohydrolase I FolE	A0A1W7AF02	Streptococcus_virus	3.4e-48	57.8
WP_013242646.1\|1963233_1965237_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	7.8e-111	50.3
WP_014300955.1\|1965233_1965815_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	3.0e-15	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage