CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_017649	Escherichia coli O7:K1 str. CE10 plasmid pCE10C, complete sequence	0 crisprs	NA	0	0
NC_017646	Escherichia coli O7:K1 str. CE10, complete sequence	3 crisprs	c2c9_V-U4,DinG,cas3,DEDDh,csa3,PD-DExK,RT,WYL	1	13
NC_017648	Escherichia coli O7:K1 str. CE10 plasmid pCE10B, complete sequence	0 crisprs	NA	0	0
NC_017647	Escherichia coli O7:K1 str. CE10 plasmid pCE10A, complete sequence	0 crisprs	NA	0	1
NC_017650	Escherichia coli O7:K1 str. CE10 plasmid pCE10D, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017646_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017646_1

965737-965884

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017646_1

>merge|NC_017646|1|965737-965884|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAGGAACAATCTTGCAAAGGCTGTGAAAGTTGGCGTTCACTGCCGTACAGGCAGCTTAGAAATTCACTGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGGCAGATAAAATG

>NC_017646|1|1|965737-965884|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTCACTGGTAACATACTCCACCCGCCCACCAT
GTTCACTGCCGTACAGGCAGATAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017646.1\|WP_000410785.1\|962347_962572_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NC_017646.1\|WP_001241667.1\|966951_967656_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NC_017646.1\|WP_000886683.1\|979768_981061_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NC_017646.1\|WP_000491135.1\|952554_953454_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NC_017646.1\|WP_000067771.1\|978334_979678_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NC_017646.1\|WP_001202192.1\|967697_969419_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NC_017646.1\|WP_000868863.1\|953793_954819_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NC_017646.1\|WP_001043595.1\|969419_971186_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NC_017646.1\|WP_001040187.1\|966448_966667_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NC_017646.1\|WP_000520781.1\|962894_963215_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_017646.1\|WP_000537432.1\|971308_972274_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NC_017646.1\|WP_000746460.1\|959216_960332_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NC_017646.1\|WP_133296361.1\|958109_959066_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NC_017646.1\|WP_000077007.1\|973447_977554_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NC_017646.1\|WP_012602407.1\|955333_956029_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NC_017646.1\|WP_001295343.1\|977712_978324_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NC_017646.1\|WP_000934041.1\|963245_965522_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NC_017646.1\|WP_000188136.1\|960328_962275_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NC_017646.1\|WP_000228473.1\|972818_973313_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NC_017646.1\|WP_000599806.1\|956454_958113_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121

Protein	Function_ID	Function_description	E-value
NC_017646.1\|WP_000410785.1\|962347_962572_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NC_017646.1\|WP_001241667.1\|966951_967656_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	9.64309e-139
NC_017646.1\|WP_000886683.1\|979768_981061_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NC_017646.1\|WP_000491135.1\|952554_953454_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.20561e-117
NC_017646.1\|WP_000067771.1\|978334_979678_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NC_017646.1\|WP_001202192.1\|967697_969419_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_017646.1\|WP_000868863.1\|953793_954819_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.311e-46
NC_017646.1\|WP_001043595.1\|969419_971186_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_017646.1\|WP_001040187.1\|966448_966667_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NC_017646.1\|WP_000520781.1\|962894_963215_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NC_017646.1\|WP_000537432.1\|971308_972274_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NC_017646.1\|WP_000746460.1\|959216_960332_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NC_017646.1\|WP_133296361.1\|958109_959066_-\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.21438e-131
NC_017646.1\|WP_000077007.1\|973447_977554_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NC_017646.1\|WP_012602407.1\|955333_956029_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	6.1197e-143
NC_017646.1\|WP_001295343.1\|977712_978324_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NC_017646.1\|WP_000934041.1\|963245_965522_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NC_017646.1\|WP_000188136.1\|960328_962275_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NC_017646.1\|WP_000228473.1\|972818_973313_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NC_017646.1\|WP_000599806.1\|956454_958113_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0

>NC_017646.1|WP_000934041.1|963245_965522_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NC_017646.1|WP_000520781.1|962894_963215_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NC_017646.1|WP_000410785.1|962347_962572_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NC_017646.1|WP_000188136.1|960328_962275_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NC_017646.1|WP_000746460.1|959216_960332_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NC_017646.1|WP_133296361.1|958109_959066_-|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NC_017646.1|WP_000599806.1|956454_958113_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NC_017646.1|WP_012602407.1|955333_956029_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFRGGWALEQLWFFWVVPIVGGIIGGLIYRPLLEKRN
>NC_017646.1|WP_000868863.1|953793_954819_+|IS110-family-transposase
MKVSTLGIDLAKNVFQLHGVDHEGHTILRKKLTRAKFVQFVIQLEPCLIGMEACSSSHYFARLFTRYGHEVKLIPPQYVKPYVKTNKTDAADAEAICEAVTRPNMRFVQIKTEEQQAVLALHTERGILIRERIACANSLRATLAEFGITIAAGQSHLTRELPAILEDGENGLSPFVRTSIYRQSKHIRELEEQVKQVEEALASWYRTQEACQRMAKIPGVGMLTATYVVAAVGNARQFSTAKQFASWLGLTPKEHSSGGKQQLGGISKRGDGYFRYLLVHGARALTAWVNRNGAVEENSWLQGLLERKHYNVAVVAMAAKTARIMWSMLSHNTEYQPRQLA
>NC_017646.1|WP_000491135.1|952554_953454_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHHQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NC_017646.1|WP_001040187.1|966448_966667_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NC_017646.1|WP_001241667.1|966951_967656_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWCEDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NC_017646.1|WP_001202192.1|967697_969419_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEATLRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NC_017646.1|WP_001043595.1|969419_971186_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEELFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEHELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NC_017646.1|WP_000537432.1|971308_972274_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NC_017646.1|WP_000228473.1|972818_973313_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NC_017646.1|WP_000077007.1|973447_977554_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRKTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQSAQQPYYAPAAEQPVQQPYYATAPEQSVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSSGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFTLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPIAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NC_017646.1|WP_001295343.1|977712_978324_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NC_017646.1|WP_000067771.1|978334_979678_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NC_017646.1|WP_000886683.1|979768_981061_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Crispr_ID: NC_017646_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017646_2

1495295-1495410

Orphan

Consensus_repeat	Method
CAGATAGCACAGGTCCGCCAGTACGTGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017646_2

>merge|NC_017646|2|1495295-1495410|CRISPRCasFinder
CAGATAGCACAGGTCCGCCAGTACGTGGACAAAAAGCAAAGTGAAATCAAGCAGACAGTCAGCCAGGGCCAGTCAGAAAACGCCCGGCAGATAGCACAGGTCCGTCAGTACGTGGA

>NC_017646|2|2|1495295-1495410|CRISPRCasFinder
CAGATAGCACAGGTCCGCCAGTACGTGGA	CAAAAAGCAAAGTGAAATCAAGCAGACAGTCAGCCAGGGCCAGTCAGAAAACGCCCGG
CAGATAGCACAGGTCCGTCAGTACGTGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017646.1\|WP_000355614.1\|1499501_1499798_+\|hypothetical-protein	unknown	unknown	unknown
NC_017646.1\|WP_015674650.1\|1490160_1490859_+\|phage-minor-tail-protein-L	unknown	unknown	gnl\|CDD\|227018
NC_017646.1\|WP_001304590.1\|1499915_1500248_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NC_017646.1\|WP_000082400.1\|1487273_1489835_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|227606
NC_017646.1\|WP_000235034.1\|1485656_1486403_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|374556
NC_017646.1\|WP_001299690.1\|1486421_1486853_+\|phage-minor-tail-protein-G	unknown	unknown	gnl\|CDD\|284344
NC_017646.1\|WP_001056486.1\|1502069_1502570_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|226210
NC_017646.1\|WP_015674652.1\|1497153_1499217_+\|prophage-tail-fiber-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|285585
NC_017646.1\|WP_001204583.1\|1499213_1499492_+\|hypothetical-protein	unknown	unknown	unknown
NC_017646.1\|WP_000807651.1\|1502655_1502835_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|226252
NC_017646.1\|WP_001228264.1\|1496402_1497002_+\|Ail/Lom-family-outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|115004
NC_017646.1\|WP_000683079.1\|1485253_1485649_+\|tail-protein	unknown	unknown	gnl\|CDD\|368765
NC_017646.1\|WP_122998302.1\|1491558_1492191_+\|tail-assembly-protein	unknown	unknown	gnl\|CDD\|227067
NC_017646.1\|WP_001304589.1\|1500433_1500886_+\|VapA/VapB-family-virulence-associated-protein	unknown	unknown	gnl\|CDD\|368482
NC_017646.1\|WP_000974998.1\|1484723_1485257_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|284235
NC_017646.1\|WP_000847312.1\|1489831_1490161_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|227062
NC_017646.1\|WP_000443096.1\|1503215_1504022_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|161792
NC_017646.1\|WP_000209513.1\|1504021_1505215_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NC_017646.1\|WP_000533402.1\|1486879_1487293_+\|phage-tail-assembly-protein-T	unknown	unknown	gnl\|CDD\|273771
NC_017646.1\|WP_000194708.1\|1490869_1491613_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|163704

Protein	Function_ID	Function_description	E-value
NC_017646.1\|WP_015674650.1\|1490160_1490859_+\|phage-minor-tail-protein-L	gnl\|CDD\|227018	COG4672, gp18, Phage-related protein [Function unknown].	7.83168e-159
NC_017646.1\|WP_001304590.1\|1499915_1500248_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	4.31421e-25
NC_017646.1\|WP_000082400.1\|1487273_1489835_+\|phage-tail-tape-measure-protein	gnl\|CDD\|227606	COG5281, COG5281, Phage-related minor tail protein [Function unknown].	0
NC_017646.1\|WP_000235034.1\|1485656_1486403_+\|phage-tail-protein	gnl\|CDD\|374556	pfam16461, Phage_TTP_12, Lambda phage tail tube protein, TTP. This family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerize with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is delivered through the tube.	1.68282e-69
NC_017646.1\|WP_001299690.1\|1486421_1486853_+\|phage-minor-tail-protein-G	gnl\|CDD\|284344	pfam06894, Phage_TAC_2, Bacteriophage lambda tail assembly chaperone, TAC, protein G. This family consists of Bacteriophage lambda minor tail protein G and related sequences. The construction of phage tails involves a stage of tail-tube formation, and tail-tube polymerization requires two additional proteins, gpG and gpGT. The open reading frames, ORFs, for gpG and gpGT are overlapping and are related by a programmed translational frameshift. During virion morphogenesis, gpG is expressed in large amounts, and about 3.5% of the time, a -1 translational frameshift leads to the production of the larger fusion protein, gpGT. The correct ratio of gpG to gpGT, as determined by the frequency of frameshifting, is crucial for tail assembly. Since gpG accumulates to high levels during a lambda infection and yet is not found in mature phage particles it is believed to act as a chaperone.	2.29585e-52
NC_017646.1\|WP_001056486.1\|1502069_1502570_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|226210	COG3685, COG3685, Uncharacterized protein conserved in bacteria [Function unknown].	1.95872e-66
NC_017646.1\|WP_015674652.1\|1497153_1499217_+\|prophage-tail-fiber-N-terminal-domain-containing-protein	gnl\|CDD\|285585	pfam08400, phage_tail_N, Prophage tail fibre N-terminal. This domain is found at the N-terminus of prophage tail fibre proteins.	4.2785e-67
NC_017646.1\|WP_000807651.1\|1502655_1502835_-\|general-stress-protein	gnl\|CDD\|226252	COG3729, GsiB, General stress protein [General function prediction only].	0.000126455
NC_017646.1\|WP_001228264.1\|1496402_1497002_+\|Ail/Lom-family-outer-membrane-beta-barrel-protein	gnl\|CDD\|115004	pfam06316, Ail_Lom, Enterobacterial Ail/Lom protein. This family consists of several bacterial and phage Ail/Lom-like proteins. The Yersinia enterocolitica Ail protein is a known virulence factor. Proteins in this family are predicted to consist of eight transmembrane beta-sheets and four cell surface-exposed loops. It is thought that Ail directly promotes invasion and loop 2 contains an active site, perhaps a receptor-binding domain. The phage protein Lom is expressed during lysogeny, and encode host-cell envelope proteins. Lom is found in the bacterial outer membrane, and is homologous to virulence proteins of two other enterobacterial genera. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis.	6.36948e-130
NC_017646.1\|WP_000683079.1\|1485253_1485649_+\|tail-protein	gnl\|CDD\|368765	pfam06141, Phage_tail_U, Phage minor tail protein U. Tail fibre component U of bacteriophage.	3.52783e-55
NC_017646.1\|WP_122998302.1\|1491558_1492191_+\|tail-assembly-protein	gnl\|CDD\|227067	COG4723, COG4723, Phage-related protein, tail component [Function unknown].	3.32848e-105
NC_017646.1\|WP_001304589.1\|1500433_1500886_+\|VapA/VapB-family-virulence-associated-protein	gnl\|CDD\|368482	pfam05526, R_equi_Vir, Rhodococcus equi virulence-associated protein. This family consists of several virulence-associated proteins from Rhodococcus equi. Rhodococcus equi is an important pulmonary pathogen of foals and is increasingly isolated from pneumonic infections and other infections in human immunodeficiency virus (HIV)-infected patients. Isolates from foals possess a large virulence plasmid, varying in size from 80 to 90 kb. Isolates lacking the plasmid are avirulent to foals. Little is known about the function of the plasmid apart from its encoding a virulence associated surface proteins.	6.06488e-30
NC_017646.1\|WP_000974998.1\|1484723_1485257_+\|phage-tail-protein	gnl\|CDD\|284235	pfam06763, Minor_tail_Z, Prophage minor tail protein Z (GPZ). This family consists of several prophage minor tail protein Z like sequences from Escherichia coli, Salmonella typhimurium and Lambda-like bacteriophages.	2.64741e-52
NC_017646.1\|WP_000847312.1\|1489831_1490161_+\|phage-tail-protein	gnl\|CDD\|227062	COG4718, COG4718, Phage-related protein [Function unknown].	8.61027e-57
NC_017646.1\|WP_000443096.1\|1503215_1504022_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|161792	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. [Amino acid biosynthesis, Aromatic amino acid family].	4.94248e-144
NC_017646.1\|WP_000209513.1\|1504021_1505215_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NC_017646.1\|WP_000533402.1\|1486879_1487293_+\|phage-tail-assembly-protein-T	gnl\|CDD\|273771	TIGR01715, Gifsy-2_prophage_probable_minor_tail_protein, phage tail assembly protein T. This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion. [Mobile and extrachromosomal element functions, Prophage functions].	1.15047e-45
NC_017646.1\|WP_000194708.1\|1490869_1491613_+\|phage-tail-protein	gnl\|CDD\|163704	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	4.56396e-50

>NC_017646.1|WP_122998302.1|1491558_1492191_+|tail-assembly-protein
MRLYGDLQRFGRRLSLYVNTAAEAIRALSMQMPGFRRQMNEGWYQIRIAGDDTAPEAVYARLHEQLGEGTVIHIVPRLAGAGKGGLQIVLGAAAIVGSFFTAGASMVLWGTALSAGGFSATTMLFSLGASMILGGVAQMLAPKAKTPDYRATDNGRQNTYFSSLDNMIAQGNPMPVPYGEMLVGSRRISLDISTRDEGGGGKVVVIGRQG
>NC_017646.1|WP_000194708.1|1490869_1491613_+|phage-tail-protein
MTQTESAILAHARRCAPAESCGFVISTPEGERYIPCVNISAEPEAYFRIAPEDWLRAEMQGEIVALVHSHPGGLPWLSEADRRLQIKSALPWWLVCRGDIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGTEMPDFHREDDWWRNGQNLYLDNLAENGFCRVSPSSAQAGDVLLCCFGSSVPNHAAVYCGDGELLHHIPEQLSKRERYSEKWQRRTHSVWRHRHWHASAFTGIYNDLAAASACM
>NC_017646.1|WP_015674650.1|1490160_1490859_+|phage-minor-tail-protein-L
MQDIREESLNESVKSEQSPRVVLWEIDLTVQGGERYFFCNELNEKGEPVTWQGREYQAYPIEGSGFEMNGKGSSARPSLTVSNLFGLVTGMAEDLQSLVGATVVRRRVYARFLDAVNFVAGNPEADPEQELSDRWVVEQMSQLTAMTASFVLATPTETDGALFPGRIMLANTCMWTCRSDECGYTGGAVADEFDKPTTDIRKDRCSKCMRGCELRRNVGNFGGFLSINKLSQ
>NC_017646.1|WP_000847312.1|1489831_1490161_+|phage-tail-protein
MKTFRWKVKPDMEVNSQPSVREVRFGYGYSQRMAAGLNADLKTYRVTLSVTREEARHLEAFLAEHGGWKAFLWKPPYAYRQIKVTCAGWSARVGMLRVEFSAEFKQVVN
>NC_017646.1|WP_000082400.1|1487273_1489835_+|phage-tail-tape-measure-protein
MSQPVGDLVIDLSLDAVRFDEQMSRVRRHFSGLDTDARKTASAVEQGLSRQALAAQKAGISVGQYKAAMRTLPAQFTDIATQLAGGQNPWLILLQQGGQVKDSFGGMIPMFRGLAGAITLPMVGVTSLAVATGALVYAWYQGDSTLSAFNKTLVLSGNQSGLTADRMLTLSRAGQAAGLTFNQASESLAAMVNAGVRGGEQFDAINQSVARFASASGVEVDKVAEAFGKLTTDPTSGLIAMAKQFHNVTAEQIAYVAQLQRSGDETGALQAANEAATKGFDDQTRRLKENMGTLETWADRTARAFKSMWDAVLDIGRPDTAQEMLIKAEAAFKKADDIWNLRKDDYFVNDEARARYWDDREKARLALEAARKKAEQQTQQDKNAQQQSDTEASRLKYTEEAQKAYERLQTPLEKYTARQEELNKALKDGKILQADYNTLMAAAKKDYEATLKKPKQSGVKVSAGDRQEDSAHAALLTLQAELRTLEKHAGANEKISQQRRDLWKAESQFAVLEEAAQRRQLSAQEKSLLAHKDETLEYKRQLAALGDKVTYQERLNALAQQADKFAQQQRAKRAAIDAKSRGLTDRQAEREATEQRLKEQYGDNPLALNNVMSEQKKTWAAEDLLRGNWMAGLRSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMTEILLKQAMVGIVGSIGSAIGGAVGGGASASGGTAIQAAAAKFHFATGGFTGTGGKYEPAGIVHRGEFVFTKEATSRIGVGNLYRLMRGYAEGGYVGGAGSPAQMRRAEGINFNQNNHVVIQNDGPNGRAGPQLMKAVYEMARKGAQDELRLQLRDGGMLSGSGG
>NC_017646.1|WP_000533402.1|1486879_1487293_+|phage-tail-assembly-protein-T
MGRPDWRAMLAGMTSTEYADWHRFYRTHYFQDTQLDMHFSGLTYAVLSLFFCDPDMHPSDFSLLVPRHEEEQVERPDEDKMLMQKAAGLAGGVRFGGDGGRDILSSADVADVMVDDAALMMASAGIPGGVRYVPAGW
>NC_017646.1|WP_001299690.1|1486421_1486853_+|phage-minor-tail-protein-G
MFLKTEQFEYNGVSVTLSELSALQRIEHLALLKRRAEEAEASGNLQVSVEDLVRTGAFLVAMSLWHNHPQKTQSPSMNEAVMKIEQEVLTTWPADAIARAEDVVLCLSGMIEAVRPDTDITEVAKNNTLTDDDFSAGKSSTAS
>NC_017646.1|WP_000235034.1|1485656_1486403_+|phage-tail-protein
MATPNPLEPVKGAGTTLWVYNGKADAYANPLSDDDWQRLAKVKDLTPGEMTAESYDDNYLDDEDADWSATGQGQKSAGDTSFTLAWKPGEEGQKGLIGWFESGDVRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGKPSVAEERSKITPVTAIKVTPTGTVEKGKTTTLTVTVEPENATDKTFRAISADPSKATISVKDMTITVTGVKDGKVSIPVISGNGQFAAVAEITVNNVPGG
>NC_017646.1|WP_000683079.1|1485253_1485649_+|tail-protein
MKHTDIRAAVLDALEQHEHGATLFDGRPVVFDEEDFPAIAVYLTDAEYTGEELDADTWRATLHIEVFLPAQVPDSELDQWMESRIYPAMTAIPALAGLITTMVTQGYEYRRDDDMALWSSADLTYSITYEM
>NC_017646.1|WP_000974998.1|1484723_1485257_+|phage-tail-protein
MAIKGLDQAIDNLSRVRKNAIPAASAMTINRVATTAINQSSSQVARETKVRRKLVKERSRLKRATVRNPNARIIVNRGDLPVIKLGIRMLGRRPNSILKAGQHRYQRAFIQRLKNGRWHVMQRVAGKNRYPIDVVKIPMAAPLKQAFDENIDRIRRERLPKELAYALKQQLRIAIKR
>NC_017646.1|WP_001228264.1|1496402_1497002_+|Ail/Lom-family-outer-membrane-beta-barrel-protein
MRKLCAVILSAVVWLVAAGTPASAAEHQSTLSAGYLQTHTDMPGSDNLNGINVKYRYEFTDTLGLITSFSYADAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTIDLAYEGSGSGDWRTDAFIVGIGYRF
>NC_017646.1|WP_015674652.1|1497153_1499217_+|prophage-tail-fiber-N-terminal-domain-containing-protein
MTVKISGVLKDGTGKPVQNCTIVLKARRTSSTVVVNTVASENPDEAGRYSMDVEYGQYSVTLLVEGFPPSHAGTITVYEGSRPGTLNDFLGAMTEDDARPEALRRFELMVNEVARHAGASSQSAAAAKKSETAAASSKNAAKTSETNAANSAQAAAASQTASANSATAAKKSETNAKNSETATKASEKNAKSSQTAAKTSETNAKDSEANAKVSETAAANSAKASAASQTAAKASEDAAREYANQTAEPYRYVLQPLPDVWIPFNDSLDMITGYSPGYKKVKIGDNVVQVASDKQVNFSRASTATYINKSGELKTAEINEPRFECDGLLIEGQRTNFFPNSTDPSKWNKSTSLDVTETGTDSFGFNYGRFVVQDSIVGTSKAHTIIGLYSSTGGVDTSGDEKHVTISCRVKSEVDNIAVRILFEHYDGEVRTSIGAANLNLTTRIISKTGQTSRVTARSVKDDATGWIFFEATLKADTTENTVGGFVQYSPDTGQMVASGDYLDVTTPQIEAGTGASSFIVTGTAPVTRASDMVTVPIKNNLYNLPFTVLCEVHKNWYKTPNAAPRVFDTYRHQADAGIVMGFGSSGGYDGFPYCDIGGSNRRINENAGLEKMLIGMRVKSERSTCVVSNGKLSSETKTKWEYIRSTATIRIGGQTTAGLRHLFGHVRNFRLWHKELTDAQLGEVVE
>NC_017646.1|WP_001204583.1|1499213_1499492_+|hypothetical-protein
MRDFTLRFSDKADFRAFLRKLNWEEDEELQNAVLVDEIGFTFSESGVSADGEPEYTRDEGYFVNIRLLDDGFDESVFREWVVTPERPLREWF
>NC_017646.1|WP_000355614.1|1499501_1499798_+|hypothetical-protein
MDITPILHAICAVAVQGLVGCITGDWAYGAAIACTFFVAREYTQAEYRWIKRFGDGHRHKMPWWGGFDPHAWDVASLMDFVVPVVACAGLYGCMLIFS
>NC_017646.1|WP_001304590.1|1499915_1500248_-|YkgJ-family-cysteine-cluster-protein
MNNPNPCMTCGACCAFFRVSFYWVETDDAGGTIPVTMTEQISPYHQCMQGTNQKNPRCVALIGQPGVNAYCSIYEHRSSTCREFPMSGEHGIVNEACNRARAKYGLPPLY
>NC_017646.1|WP_001304589.1|1500433_1500886_+|VapA/VapB-family-virulence-associated-protein
MVTTMTKCSNLRQQIMDDVQRRYGEYLDKDKVSCITSKIAAAENKYPAKTTLASAIFYIKVDTQITSEGGKHFSGNAGGLSSPGGGVLFGDLYTDDLDDLYTNTVSFQITMTPVFCSVLFFDSASNLLGHFEGGGVSTVSGVAGGTGSWS
>NC_017646.1|WP_001056486.1|1502069_1502570_-|ferritin-like-domain-containing-protein
MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARAKSNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLALNNVNKKAENKA
>NC_017646.1|WP_000807651.1|1502655_1502835_-|general-stress-protein
MAEHRGGSGNFAEDREKASDAGRKGGQHSGGNFKNDPQRASEAGKKGGQQSGGNKSGKS
>NC_017646.1|WP_000443096.1|1503215_1504022_-|tryptophan-synthase-subunit-alpha
MERYESLFIRLKERHEGAFVPFVTLGDPGIEQSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMYANLVFNKGVDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVTKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKAFVQPMKAATRS
>NC_017646.1|WP_000209513.1|1504021_1505215_-|tryptophan-synthase-subunit-beta
MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILEREGRLPDAVIACVGGGSNAIGMFADFINETDVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALEAFKTLCLHEGIIPALESSHALAHALKMMRENPEKEQLLVVNLSGRGDKDIFTVHDILKARGEI

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Crispr_ID: NC_017646_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017646_3

5114817-5114963

Orphan

Consensus_repeat	Method
GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017646_3

>merge|NC_017646|3|5114817-5114963|CRISPRCasFinder
GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>NC_017646|3|3|5114817-5114963|CRISPRCasFinder
GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTGTTGT
GTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017646.1\|WP_001298035.1\|5109417_5109921_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_017646.1\|WP_001346533.1\|5105263_5106484_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NC_017646.1\|WP_012602660.1\|5125710_5126730_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NC_017646.1\|WP_000896738.1\|5125143_5125707_+\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NC_017646.1\|WP_001197408.1\|5123895_5124927_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NC_017646.1\|WP_000428627.1\|5104320_5105253_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
NC_017646.1\|WP_000786399.1\|5114202_5114646_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NC_017646.1\|WP_001128336.1\|5121723_5123043_-\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NC_017646.1\|WP_000998700.1\|5123107_5123872_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NC_017646.1\|WP_001000682.1\|5110113_5111301_+\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|226719
NC_017646.1\|WP_000002952.1\|5108824_5109241_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NC_017646.1\|WP_000584115.1\|5116777_5117878_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NC_017646.1\|WP_001294549.1\|5119078_5120581_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NC_017646.1\|WP_000397144.1\|5114999_5116511_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NC_017646.1\|WP_000012936.1\|5107658_5108663_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NC_017646.1\|WP_001304655.1\|5120658_5121657_-\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NC_017646.1\|WP_000416367.1\|5111347_5114203_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_017646.1\|WP_001295681.1\|5117877_5118960_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NC_017646.1\|WP_000635215.1\|5107161_5107614_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NC_017646.1\|WP_000235828.1\|5103292_5104297_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366

Protein	Function_ID	Function_description	E-value
NC_017646.1\|WP_001298035.1\|5109417_5109921_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51706e-18
NC_017646.1\|WP_001346533.1\|5105263_5106484_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NC_017646.1\|WP_012602660.1\|5125710_5126730_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	8.18077e-169
NC_017646.1\|WP_000896738.1\|5125143_5125707_+\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
NC_017646.1\|WP_001197408.1\|5123895_5124927_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NC_017646.1\|WP_000428627.1\|5104320_5105253_-\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
NC_017646.1\|WP_000786399.1\|5114202_5114646_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NC_017646.1\|WP_001128336.1\|5121723_5123043_-\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NC_017646.1\|WP_000998700.1\|5123107_5123872_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NC_017646.1\|WP_001000682.1\|5110113_5111301_+\|DUF898-family-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	3.51301e-106
NC_017646.1\|WP_000002952.1\|5108824_5109241_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	8.18116e-69
NC_017646.1\|WP_000584115.1\|5116777_5117878_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NC_017646.1\|WP_001294549.1\|5119078_5120581_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NC_017646.1\|WP_000397144.1\|5114999_5116511_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NC_017646.1\|WP_000012936.1\|5107658_5108663_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NC_017646.1\|WP_001304655.1\|5120658_5121657_-\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.9949e-108
NC_017646.1\|WP_000416367.1\|5111347_5114203_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_017646.1\|WP_001295681.1\|5117877_5118960_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NC_017646.1\|WP_000635215.1\|5107161_5107614_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	1.2775e-64
NC_017646.1\|WP_000235828.1\|5103292_5104297_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0

>NC_017646.1|WP_000786399.1|5114202_5114646_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NC_017646.1|WP_000416367.1|5111347_5114203_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDIYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPASVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NC_017646.1|WP_001000682.1|5110113_5111301_+|DUF898-family-protein
MNDVNIGKDNSRHSFVFTGKGGEYFLICLVNFLLTIITLGIYGPWALIKCRRYIYQHVTLKGQPFSYKGTGGAIFVSMLLIVVVYLLSISCFAGQHFALGLFLFALLICGIPCMAVKSLQYQANMTSLNDIRFGFNCSMMRAWWVMLGLPVLLALVFWFALYLIAQVTTSIGGLFFNLVALSLLSAIGLGVVHGITYSKWMPLLGNNATFGIHKFSIQVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLMMMTMLGRSDAGSEFVLQYYPQIMASYFLYFVAILVFASYLYVTLRNLFLNNLTLANGTIRFHSSVTAIGMFLRMLAVLMGSSVTCGLAYPWLKMWMVSWIANNTHVQGNLDSLELTNDDKPQDSGSLMWISRGIMPYVPFI
>NC_017646.1|WP_001298035.1|5109417_5109921_-|GNAT-family-N-acetyltransferase
MNVVASPALRLRKLTVADNPAIAHVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLRKL
>NC_017646.1|WP_000002952.1|5108824_5109241_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGIRH
>NC_017646.1|WP_000012936.1|5107658_5108663_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVAECSALAQKHGGKITLTEDIASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSKMMALTGNSQVKFLHCLPAFHDEQTTLGKKMAAEFGLYGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLAK
>NC_017646.1|WP_000635215.1|5107161_5107614_+|YhcH/YjgK/YiaL-family-protein
MIVGNIHHLQSWLPEELREAIEYIKSHVSDETAKGKHAIDGDRLFYLISEDTTEPGELRRAEYHARYLDIQIVLKGQEGMTFSTQPAGVPETDWLADKDIAFIGQGIDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKLLKA
>NC_017646.1|WP_001346533.1|5105263_5106484_-|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDIPEAKSWLLETQISDYRLGPTFATDVRTWLAEMSHRDLARHLSGGLTYSEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGIEFLAQALFKHRQAERVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVNCWTLTPDGHGGLKRTQESTLLHAIEKALGIDQVRLITTGGDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLHRDGI
>NC_017646.1|WP_000428627.1|5104320_5105253_-|carbamate-kinase
MENKPTLVIALGGNALLKRGEPLEAEIQRKNIDLAAKTIAQLTQHWRVVLVHGNGPQVGLLALQNSAYAHVAPYPLDILGAESQGMIGYMLQQALKNQLPQREISVLLTQVEVDANDPAFSNPTKYIGPIYDHAQTQVLQAEKGWVFKADGHSFRRVVPSPQPKRIVERDAIQTLIAHDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQIHADALLILTDADAVYLDWGKPTQRPLAQVTPELLNEMQFDAGSMGPKVTACAKFVSQCRGIAGIGSLADGPEILAGDKGTLIRLDTPHNHA
>NC_017646.1|WP_000235828.1|5103292_5104297_-|ornithine-carbamoyltransferase
MATSLKNRNFLKLLDYTPAEIQYLIDLAINLKAAKKSGNEKQTLVGKNIALIFEKSSTRTRCAFEVAAFDQGAQVTYIGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQNIVEELGEFAGVPVWNGLTNEFHPTQILADLMTMLEHAPGKTLPELSFAYLGDARNNMGNSLMVGAAKMGMDIRLVAPKSFWPDEALVTQCREIASVTGARITLTEDVEEGVYDVDFLYTDVWVSMGEPKEAWAERVSLMAPYQINQQVITATRNPEVKFMHCLPAFHNEHTTVGREIEMAYGLKGLEVTEEVFESAHSIVFDEAENRMHTIKAVMVATLGD
>NC_017646.1|WP_000397144.1|5114999_5116511_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NC_017646.1|WP_000584115.1|5116777_5117878_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTTLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NC_017646.1|WP_001295681.1|5117877_5118960_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NC_017646.1|WP_001294549.1|5119078_5120581_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGATHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKSAAQTMRANPAFDTEKAIQELGTGEALISFLDTKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGVQANTEQQKNPPTKEKEVAVDDGILGGLKDILFGSTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NC_017646.1|WP_001304655.1|5120658_5121657_-|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLDKRVRRKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NC_017646.1|WP_001128336.1|5121723_5123043_-|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NC_017646.1|WP_000998700.1|5123107_5123872_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLRQEGIRAVAAPFNVTHKHEIDTAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NC_017646.1|WP_001197408.1|5123895_5124927_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTIAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGASEIVCADVSPRSLLLAKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NC_017646.1|WP_000896738.1|5125143_5125707_+|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NC_017646.1|WP_012602660.1|5125710_5126730_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELELYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVLTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRIGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALARQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017646_1	1.2\|965825\|32\|NC_017646\|CRISPRCasFinder	965825-965856	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NC_017646_1	1.2\|965825\|32\|NC_017646\|CRISPRCasFinder	965825-965856	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NC_017646_1	1.2\|965825\|32\|NC_017646\|CRISPRCasFinder	965825-965856	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719

1. spacer 1.2|965825|32|NC_017646|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcactggtaacatactccacccgcccaccat	CRISPR spacer
tgtcctggtaacatgttccacccgcccggtgt	Protospacer
* . **********..***********. ..*

2. spacer 1.2|965825|32|NC_017646|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcactggtaacatactccacccgcccaccat	CRISPR spacer
tgtcctggtaacatgttccacccgcccggtgt	Protospacer
* . **********..***********. ..*

3. spacer 1.2|965825|32|NC_017646|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcactggtaacatactccacccgcccaccat	CRISPR spacer
tgtcctggtaacatgttccacccgcccggtgt	Protospacer
* . **********..***********. ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

533480 : 607647

Enterobacteria_phage(52.5%)

capsid,portal,lysis,tRNA,terminase,tail,transposase,protease,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001158008.1\|533480_534575_-\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_000460145.1\|534643_535570_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA
WP_000776388.1\|535799_536282_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_000141275.1\|536359_537175_+	HTH-type transcriptional repressor AllR	NA	NA	NA	NA
WP_001571054.1\|537264_539046_+	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	3.5e-38	27.4
WP_000943571.1\|539058_539835_+	hydroxypyruvate isomerase	NA	NA	NA	NA
WP_000765837.1\|539934_540813_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA
WP_000401151.1\|540982_542437_+	putative allantoin permease	NA	NA	NA	NA
WP_000006898.1\|542497_543859_+	allantoinase AllB	NA	NA	NA	NA
WP_001302767.1\|543915_545217_+	uracil/xanthine transporter	NA	NA	NA	NA
WP_012602207.1\|545238_546384_+	glycerate 3-kinase	W6LM47	Streptococcus_phage	2.2e-49	43.0
WP_000540951.1\|546513_547299_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA
WP_015674601.1\|547309_548545_-	allantoate deiminase	NA	NA	NA	NA
WP_000703915.1\|548566_549616_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_001015004.1\|549933_551601_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_000495385.1\|551610_552870_+	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_015674602.1\|552880_553696_+	DUF2877 domain-containing protein	NA	NA	NA	NA
WP_000855388.1\|553692_554586_+	carbamate kinase	NA	NA	NA	NA
WP_000815540.1\|554818_555886_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_001295318.1\|555882_556392_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_000212239.1\|556509_557232_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_000256006.1\|557234_557729_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_000912345.1\|557902_559288_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143509.1\|559323_559845_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|559952_560165_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729161.1\|560166_561033_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000776555.1\|561504_562047_+	type 1 fimbrial major subunit FimA	NA	NA	NA	NA
WP_000988385.1\|562265_562958_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_012602209.1\|562988_565598_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691075.1\|565610_566618_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_032142694.1\|566644_567145_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805414.1\|567147_567780_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
WP_162901046.1\|568437_569650_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_001605265.1\|570421_570973_+	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_000881075.1\|570982_571780_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001303586.1\|571896_571998_+	hypothetical protein	NA	NA	NA	NA
WP_001054342.1\|571994_572450_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	5.4e-60	66.9
WP_000224916.1\|572449_572620_+	hypothetical protein	K7P7K0	Enterobacteria_phage	1.5e-12	67.9
WP_000774488.1\|572612_572903_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.3e-47	94.8
WP_001099715.1\|572899_573262_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	1.6e-59	95.7
WP_000971055.1\|573258_573399_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
WP_001204778.1\|573484_573862_+	antitermination protein	Q777W5	Enterobacteria_phage	5.6e-55	84.2
WP_000780581.1\|574017_574542_-	lipocalin family protein	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
WP_000592546.1\|574734_575694_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_001146309.1\|576045_576777_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000839582.1\|576965_577181_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.2e-33	98.6
WP_001135296.1\|577180_577678_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	1.6e-89	97.0
WP_001228695.1\|577894_578077_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738421.1\|578167_578461_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_000453587.1\|579128_579674_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027233.1\|579648_581574_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
WP_000198149.1\|581570_581777_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001595430.1\|581773_583375_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.6e-308	98.5
WP_000123221.1\|583355_584687_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.2e-229	97.7
WP_000201478.1\|584696_585029_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.7e-51	90.9
WP_000118192.1\|585084_586110_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	5.4e-185	95.6
WP_085949836.1\|586467_587681_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4
WP_000752965.1\|587819_588173_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_000975065.1\|588184_588763_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	98.4
WP_000683128.1\|588759_589155_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	99.2
WP_021521695.1\|589162_589903_+\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	2.9e-132	99.2
WP_000479153.1\|589918_590341_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.7e-73	100.0
WP_000459482.1\|590322_590781_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.8e-63	98.3
WP_000730014.1\|590749_593314_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	91.4
WP_000847348.1\|593310_593640_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.8e-57	97.2
WP_001152645.1\|593639_594338_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.6e-132	98.3
WP_000140691.1\|594342_595086_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.8e-144	93.5
WP_000090891.1\|595022_595655_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_000536622.1\|595715_599195_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.0
WP_001228252.1\|599262_599862_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	3.4e-102	92.5
WP_000741758.1\|599926_602326_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M194	Enterobacteria_phage	3.9e-133	55.2
WP_000654151.1\|602322_602604_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	3.1e-18	50.0
WP_000235984.1\|602613_603318_+\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	9.2e-59	61.7
WP_000355609.1\|603328_603622_+	hypothetical protein	NA	NA	NA	NA
WP_000239881.1\|603815_604484_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001226375.1\|605022_606507_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201825.1\|606693_607647_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA

DBSCAN-SWA_2

824648 : 836343

Escherichia_phage(38.1%)

transposase,protease,integrase

attL 812468:812484|attR 844012:844028

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
812468:812484	attL	NA	NA	NA	NA
WP_000533633.1\|824648_825719_-\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	1.6e-200	99.4
WP_001303849.1\|825696_825915_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_021528627.1\|826032_826377_-	hypothetical protein	K7PJY7	Enterobacterial_phage	2.0e-59	99.1
WP_000545716.1\|826403_826571_-	hypothetical protein	K7P728	Enterobacteria_phage	9.2e-26	92.7
WP_000208050.1\|826671_827199_-	DUF551 domain-containing protein	V5UT79	Shigella_phage	2.7e-63	69.4
WP_001289886.1\|827712_828306_-	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	9.5e-57	78.8
WP_000015508.1\|828302_828527_-	hypothetical protein	Q286X0	Escherichia_phage	2.7e-36	98.6
WP_000812190.1\|828523_828943_-	hypothetical protein	K7PMI0	Enterobacteria_phage	2.2e-36	56.9
WP_001214452.1\|828939_829104_-	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	4.6e-22	98.1
WP_001111287.1\|829114_829411_-	DUF2856 family protein	G9L665	Escherichia_phage	3.9e-43	87.8
WP_000073095.1\|829434_830022_-	hypothetical protein	A0A2D1GLM1	Escherichia_phage	7.8e-104	97.4
WP_000536247.1\|830018_830699_-	ATP-binding protein	A0A2D1GLT5	Escherichia_phage	4.5e-127	100.0
WP_000613345.1\|830707_830896_-	hypothetical protein	G9L668	Escherichia_phage	6.5e-28	98.4
WP_000361831.1\|830892_831006_-	host cell division inhibitory peptide Kil	G9L669	Escherichia_phage	2.7e-13	100.0
WP_001198858.1\|830998_831139_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	3.3e-21	100.0
WP_162901046.1\|831491_832705_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_000895335.1\|833260_833590_-	hypothetical protein	Q9AYY8	Salmonella_phage	1.7e-52	99.1
WP_000757524.1\|833620_833986_+	hypothetical protein	A0A192Y6W5	Salmonella_phage	1.8e-66	99.2
WP_001085430.1\|833999_834179_-	hypothetical protein	B8K1I9	Salmonella_phage	2.1e-28	100.0
WP_000903306.1\|834317_834854_-\|protease	ATP-dependent Clp protease proteolytic subunit	NA	NA	NA	NA
WP_000675427.1\|834853_835102_-	Arc family DNA-binding protein	G0ZNE9	Cronobacter_phage	1.5e-08	46.2
WP_000868194.1\|835211_835352_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_015674611.1\|835413_836343_+	phage antirepressor Ant	I6R977	Salmonella_phage	6.3e-148	86.1
844012:844028	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1072216 : 1130632

Escherichia_phage(44.26%)

capsid,portal,holin,terminase,tail,integrase,protease,head

attL 1064715:1064731|attR 1104088:1104104

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1064715:1064731	attL	NA	NA	NA	NA
WP_000375131.1\|1072216_1072876_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	5.2e-48	55.3
WP_001295940.1\|1073596_1074715_+	hydrogenase 1 small subunit	NA	NA	NA	NA
WP_000107384.1\|1074711_1076505_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001186407.1\|1076523_1077231_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003630.1\|1077227_1077815_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
WP_000063959.1\|1077811_1078210_+	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA
WP_000004894.1\|1078206_1079064_+	hydrogenase expression/formation protein	NA	NA	NA	NA
WP_000263563.1\|1079197_1080742_+	cytochrome bd-II oxidase subunit 1	NA	NA	NA	NA
WP_000460817.1\|1080753_1081890_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_001313720.1\|1081902_1081995_+	cytochrome bd-II oxidase subunit CbdX	NA	NA	NA	NA
WP_015674618.1\|1082074_1083385_+	bifunctional acid phosphatase/4-phytase	NA	NA	NA	NA
WP_000087763.1\|1083372_1083585_-	cold shock-like protein CspH	NA	NA	NA	NA
WP_000066490.1\|1083870_1084083_+	cold shock protein CspG	A0A1W6JNX5	Morganella_phage	7.8e-22	71.4
WP_071528143.1\|1084093_1084282_+	cold-shock protein	NA	NA	NA	NA
WP_032142634.1\|1084256_1084487_+	protein YmcE	NA	NA	NA	NA
WP_001019197.1\|1084476_1084650_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000136998.1\|1084698_1085772_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_001054718.1\|1085843_1088588_-	TMAO reductase system sensor histidine kinase/response regulator TorS	A0A1V0SGX0	Hokovirus	4.9e-39	32.8
WP_000533660.1\|1088682_1089756_-\|integrase	tyrosine-type recombinase/integrase	Q9G075	Enterobacteria_phage	9.0e-199	98.9
WP_001303849.1\|1089733_1089952_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000545737.1\|1089991_1090159_-	hypothetical protein	A5VWB7	Enterobacteria_phage	9.8e-28	100.0
WP_000002113.1\|1090231_1090516_-	ASCH domain-containing protein	A0A2D1GLL3	Escherichia_phage	5.4e-50	98.9
WP_000208021.1\|1090508_1091132_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.8e-53	53.8
WP_000582230.1\|1091142_1091898_-	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	1.4e-142	92.8
WP_001289944.1\|1091899_1092544_-	ead/Ea22-like family protein	A0A0P0ZDS3	Stx2-converting_phage	2.6e-60	98.3
WP_000015508.1\|1092540_1092765_-	hypothetical protein	Q286X0	Escherichia_phage	2.7e-36	98.6
WP_001214454.1\|1092761_1092929_-	DUF2737 family protein	Q716F2	Shigella_phage	8.6e-24	98.2
WP_001111288.1\|1092939_1093236_-	DUF2856 family protein	G9L665	Escherichia_phage	9.5e-50	100.0
WP_000073093.1\|1093259_1093847_-	hypothetical protein	G9L666	Escherichia_phage	6.0e-104	97.9
WP_015674620.1\|1093843_1094524_-	ATP-binding protein	A0A2D1GLT5	Escherichia_phage	1.0e-126	99.6
WP_000613346.1\|1094532_1094721_-	hypothetical protein	G9L668	Escherichia_phage	2.2e-28	100.0
WP_015674621.1\|1094717_1094831_-	host cell division inhibitory peptide Kil	G9L669	Escherichia_phage	1.0e-12	97.3
WP_001198858.1\|1094823_1094964_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	3.3e-21	100.0
WP_000095087.1\|1095185_1095809_-	hypothetical protein	K7PKU5	Enterobacteria_phage	2.3e-106	95.7
WP_000088206.1\|1095870_1096143_-	hypothetical protein	A0A0N7C217	Escherichia_phage	1.7e-40	98.9
WP_000438344.1\|1096120_1096303_-	hypothetical protein	A0A0N7C057	Escherichia_phage	8.2e-28	98.3
WP_001081279.1\|1096587_1097517_-	hypothetical protein	NA	NA	NA	NA
WP_000522969.1\|1097513_1098059_-	hypothetical protein	NA	NA	NA	NA
WP_001274754.1\|1098178_1098892_-	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	6.8e-126	95.4
WP_000437875.1\|1098992_1099193_+	Cro/Cl family transcriptional regulator	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
WP_000442610.1\|1099331_1099631_+	hypothetical protein	A0A0P0ZBJ0	Stx2-converting_phage	6.9e-48	96.0
WP_000062365.1\|1099793_1100570_+	helix-turn-helix domain-containing protein	A0A0P0ZC04	Stx2-converting_phage	1.6e-136	99.6
WP_043951500.1\|1100677_1102558_+	toprim domain-containing protein	K7PK08	Enterobacteria_phage	0.0e+00	99.2
WP_000103672.1\|1102647_1102863_+	hypothetical protein	G9L684	Escherichia_phage	6.5e-32	98.6
WP_001229011.1\|1103036_1103477_+	recombination protein NinB	A0A2I6PIF6	Escherichia_phage	5.0e-79	98.6
WP_024201977.1\|1103473_1103656_+	NinE family protein	A0A0P0ZDL7	Stx2-converting_phage	2.8e-28	96.7
WP_000566998.1\|1103652_1103823_+	protein ninF	A0A2I6PIG4	Escherichia_phage	7.2e-26	100.0
WP_001003995.1\|1103815_1104538_+	phage antirepressor KilAC domain-containing protein	K7P7L0	Enterobacteria_phage	6.2e-119	91.7
1104088:1104104	attR	NA	NA	NA	NA
WP_000002251.1\|1104537_1104828_+	DUF1364 domain-containing protein	K7PK25	Enterobacteria_phage	7.1e-50	97.9
WP_001008196.1\|1104824_1105187_+	RusA family crossover junction endodeoxyribonuclease	K7P6I9	Enterobacteria_phage	2.7e-62	99.2
WP_001030162.1\|1105183_1105327_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	1.8e-17	80.9
WP_001241331.1\|1105326_1105941_+	hypothetical protein	A0A2H4FND2	Salmonella_phage	2.6e-102	88.2
WP_000839574.1\|1106457_1106673_+\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	2.4e-34	100.0
WP_000193289.1\|1106677_1107028_+	YdfR family protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
WP_000992100.1\|1107091_1107625_+	lysozyme	Q08J98	Stx2-converting_phage	3.6e-100	94.4
WP_001228685.1\|1107841_1108027_+	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	6.4e-20	80.3
WP_001100260.1\|1108244_1108511_+	hypothetical protein	NA	NA	NA	NA
WP_000351660.1\|1108516_1109056_-	YfbU family protein	NA	NA	NA	NA
WP_001111090.1\|1109194_1109545_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	4.3e-65	98.3
WP_021562586.1\|1109693_1110176_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	1.1e-84	98.1
WP_001140885.1\|1110175_1111933_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.1
WP_000811487.1\|1111929_1112091_+	hypothetical protein	NA	NA	NA	NA
WP_000923129.1\|1112080_1113307_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	1.1e-203	83.1
WP_000999828.1\|1113299_1113899_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.9e-89	81.0
WP_000766109.1\|1113913_1115131_+\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	5.9e-162	71.6
WP_000719066.1\|1115207_1115525_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	6.2e-23	50.5
WP_001147814.1\|1115533_1115872_+\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	7.5e-51	90.2
WP_000968644.1\|1115868_1116318_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	6.1e-64	81.2
WP_001206698.1\|1116314_1116659_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	6.1e-56	98.2
WP_000097528.1\|1116718_1117423_+	immunoglobulin domain-containing protein	A0A1B5FP82	Escherichia_phage	2.8e-116	94.4
WP_000164661.1\|1117437_1117809_+\|tail	phage tail assembly chaperone	A0A1B5FP91	Escherichia_phage	6.5e-64	100.0
WP_000978930.1\|1117832_1118111_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	3.6e-43	97.8
WP_000224011.1\|1118157_1121397_+\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.6
WP_001115183.1\|1121389_1121731_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	7.1e-41	66.4
WP_001152453.1\|1121730_1122429_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	8.1e-132	97.8
WP_024201978.1\|1122433_1123177_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	3.5e-149	97.6
WP_021521165.1\|1123074_1123722_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.5e-111	96.3
WP_000515721.1\|1123782_1127481_+	DUF1983 domain-containing protein	A0A0K2FI38	Escherichia_phage	0.0e+00	75.5
WP_001228217.1\|1127548_1128148_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	5.0e-106	93.5
WP_000216479.1\|1128299_1130357_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	5.7e-149	64.5
WP_001204579.1\|1130353_1130632_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	7.9e-22	50.5

DBSCAN-SWA_4

1260459 : 1349639

120

Enterobacteria_phage(21.62%)

capsid,portal,holin,tRNA,plate,terminase,tail,transposase,integrase,protease,head

attL 1267513:1267527|attR 1337189:1337203

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000085258.1\|1260459_1261689_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	8.4e-132	55.9
WP_000953272.1\|1262054_1262243_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	2.0e-13	66.0
WP_071781411.1\|1262300_1263359_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_001230911.1\|1263351_1263816_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000549001.1\|1263808_1264036_+	hypothetical protein	NA	NA	NA	NA
WP_000791984.1\|1264041_1264341_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000761803.1\|1264337_1266086_+	DNA primase	Q7M2A8	Enterobacteria_phage	7.1e-92	40.7
WP_001260556.1\|1266374_1266632_+	hypothetical protein	NA	NA	NA	NA
WP_000126632.1\|1266628_1267039_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000233312.1\|1267048_1267321_+	PerC family transcriptional regulator	NA	NA	NA	NA
1267513:1267527	attL	NA	NA	NA	NA
WP_001137340.1\|1267608_1268766_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	3.6e-137	64.9
WP_000504048.1\|1268805_1269378_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	4.2e-62	64.1
WP_000267609.1\|1269379_1270591_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	5.6e-189	79.2
WP_001020674.1\|1270587_1270926_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	8.7e-31	52.7
WP_000134114.1\|1270922_1271219_+\|head,tail	phage head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	2.4e-32	65.3
WP_001145904.1\|1271218_1271659_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.9e-62	72.6
WP_000174068.1\|1271642_1271825_+	hypothetical protein	NA	NA	NA	NA
WP_000113645.1\|1271947_1272304_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
WP_000127897.1\|1272287_1273949_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	4.4e-277	81.4
WP_000133414.1\|1273962_1274244_+	hypothetical protein	NA	NA	NA	NA
WP_000735412.1\|1274775_1276236_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1276235_1276907_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423737.1\|1277075_1278446_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.6e-107	44.9
WP_001295971.1\|1278449_1279091_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001295972.1\|1279126_1280233_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|1280286_1280748_-	phosphatase NudJ	NA	NA	NA	NA
WP_000873386.1\|1280757_1281396_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_012602377.1\|1281728_1282079_-	DUF1493 family protein	NA	NA	NA	NA
WP_000381621.1\|1282063_1282513_-	hypothetical protein	NA	NA	NA	NA
WP_000444487.1\|1283092_1284343_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_000741328.1\|1284456_1285599_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	4.8e-206	100.0
WP_000088653.1\|1285588_1285825_-	excisionase	NA	NA	NA	NA
WP_000488402.1\|1285964_1286204_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	2.0e-37	92.4
WP_000763364.1\|1286251_1286470_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	1.8e-34	95.8
WP_000151206.1\|1286568_1286784_-	hypothetical protein	M1FPM2	Enterobacteria_phage	6.5e-32	97.2
WP_000581109.1\|1286791_1287544_-	hypothetical protein	M1FN76	Enterobacteria_phage	6.4e-151	100.0
WP_000682312.1\|1287540_1287699_-	DUF1317 family protein	M1FJ61	Enterobacteria_phage	1.5e-22	98.1
WP_000186887.1\|1287695_1288376_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	3.0e-131	99.1
WP_012602375.1\|1288372_1289158_-	phage recombination protein Bet	A0A0K2FJF1	Enterobacteria_phage	1.2e-147	99.6
WP_000995434.1\|1289163_1289460_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.1e-48	98.0
WP_000372923.1\|1289535_1289679_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	2.7e-18	97.9
WP_001198860.1\|1289647_1289812_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	A0A0N6WES3	Escherichia_phage	1.4e-26	100.0
WP_000065374.1\|1289884_1290253_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	2.0e-65	100.0
WP_139371347.1\|1290373_1291586_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_000830178.1\|1292231_1292558_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000881610.1\|1292764_1292947_+	hypothetical protein	NA	NA	NA	NA
WP_000867568.1\|1293508_1294057_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_000904922.1\|1294805_1295378_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
WP_001143957.1\|1295467_1295923_+\|tail	tail fiber protein	M1TAS6	Escherichia_phage	1.2e-30	52.3
WP_000072166.1\|1295929_1296544_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	1.7e-61	61.5
WP_000527460.1\|1296543_1297875_-\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	3.7e-40	44.8
WP_000138756.1\|1297877_1298456_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	1.7e-66	66.8
WP_001219102.1\|1298448_1299552_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	8.3e-107	55.2
WP_000148265.1\|1299944_1300541_-\|plate	phage baseplate assembly protein V	A4JWL4	Burkholderia_virus	5.4e-36	45.2
WP_000808005.1\|1300537_1301692_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-85	47.6
WP_000478224.1\|1301679_1301892_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
WP_000458386.1\|1301891_1302776_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
WP_000016537.1\|1302775_1305727_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.0e-83	29.6
WP_001202894.1\|1305802_1305961_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084213.1\|1305884_1306220_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_162832341.1\|1306601_1307126_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	1.1e-67	66.7
WP_000729834.1\|1307122_1308550_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
WP_000666499.1\|1308539_1308791_-	hypothetical protein	NA	NA	NA	NA
WP_001101804.1\|1308790_1309255_-	Gp37 family protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000271669.1\|1309254_1309701_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	1.4e-33	51.7
WP_000537457.1\|1309702_1310041_-	DUF2190 family protein	NA	NA	NA	NA
WP_001286908.1\|1310050_1311004_-	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
WP_001273067.1\|1311018_1312134_-	hypothetical protein	A4JWJ9	Burkholderia_virus	5.5e-98	51.6
WP_000135514.1\|1312348_1312807_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
WP_000117547.1\|1312809_1313631_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	1.6e-99	62.3
WP_000090685.1\|1313611_1315108_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	4.0e-168	59.0
WP_170917837.1\|1315107_1316649_-	hypothetical protein	A4JWJ4	Burkholderia_virus	2.1e-185	63.0
WP_000124059.1\|1316795_1317245_-	DUF3486 family protein	Q6QIC2	Burkholderia_phage	3.8e-50	70.5
WP_000227700.1\|1317244_1317556_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000175097.1\|1317555_1317882_-	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_000264661.1\|1317878_1318529_-	hypothetical protein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
WP_001104439.1\|1318512_1319253_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-62	51.4
WP_000793146.1\|1319255_1319606_-\|holin	putative holin	A4JWP3	Burkholderia_virus	1.5e-22	53.0
WP_000149906.1\|1319736_1320213_+	ABC transporter ATPase	NA	NA	NA	NA
WP_001330012.1\|1320250_1320838_-	hypothetical protein	NA	NA	NA	NA
WP_000031883.1\|1320922_1321909_-	hypothetical protein	NA	NA	NA	NA
WP_001259268.1\|1321905_1322367_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000200153.1\|1322417_1322606_+	DNA-binding protein	Q5ZQZ9	Pseudomonas_phage	6.1e-18	71.0
WP_000049025.1\|1322658_1322967_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	5.5e-24	55.9
WP_000533821.1\|1322977_1323892_+	DUF3102 domain-containing protein	A4JWN3	Burkholderia_virus	6.8e-70	52.5
WP_000990532.1\|1323895_1325665_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	1.4e-228	68.5
WP_000960681.1\|1325675_1326842_+	AAA family ATPase	A4JWN1	Burkholderia_virus	2.8e-121	59.4
WP_000843446.1\|1326844_1327114_+	hypothetical protein	NA	NA	NA	NA
WP_001140136.1\|1327141_1327672_+	host-nuclease inhibitor Gam family protein	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
WP_000632580.1\|1327960_1328233_+	hypothetical protein	NA	NA	NA	NA
WP_001299260.1\|1328242_1328539_+	hypothetical protein	NA	NA	NA	NA
WP_000763554.1\|1328553_1328769_+	hypothetical protein	NA	NA	NA	NA
WP_000132037.1\|1328765_1329449_+	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	1.4e-24	36.2
WP_085949836.1\|1329557_1330771_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4
WP_015674638.1\|1330796_1330937_+	hypothetical protein	NA	NA	NA	NA
WP_000123379.1\|1330926_1331142_+	hypothetical protein	NA	NA	NA	NA
WP_001299262.1\|1331134_1331584_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.6e-24	45.9
WP_001281695.1\|1331555_1331945_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
WP_000741757.1\|1332343_1334743_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M194	Enterobacteria_phage	3.0e-133	55.2
WP_000654154.1\|1334739_1335021_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.2e-17	47.8
WP_000235967.1\|1335030_1335735_+\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	1.2e-58	61.7
WP_000355609.1\|1335745_1336039_+	hypothetical protein	NA	NA	NA	NA
WP_000968127.1\|1336130_1336988_-	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_001101730.1\|1336984_1337842_-	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
1337189:1337203	attR	NA	NA	NA	NA
WP_000983716.1\|1337838_1338666_-	iron/manganese ABC transporter ATP-binding protein SitB	G9BWD6	Planktothrix_phage	7.6e-12	29.0
WP_000555630.1\|1338665_1339580_-	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_001304451.1\|1340278_1341037_+	hypothetical protein	NA	NA	NA	NA
WP_000539892.1\|1341508_1341661_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.6e-21	100.0
WP_000871293.1\|1341763_1342087_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	4.0e-41	65.4
WP_120795380.1\|1342346_1342391_-	protein YmgK	NA	NA	NA	NA
WP_019842521.1\|1342628_1342739_-	hypothetical protein	NA	NA	NA	NA
WP_000373096.1\|1342791_1343196_-	DUF1398 domain-containing protein	NA	NA	NA	NA
WP_000332300.1\|1343416_1344148_-	DNA-binding transcriptional repressor BluR	Q9EYF2	Enterobacteria_phage	3.5e-53	50.5
WP_176265401.1\|1344878_1346092_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.7e-165	97.0
WP_000958304.1\|1346097_1346877_-	diguanylate phosphodiesterase	NA	NA	NA	NA
WP_000554153.1\|1347190_1347427_+	two-component-system connector protein YcgZ	NA	NA	NA	NA
WP_000858011.1\|1347469_1347742_+	hypothetical protein	NA	NA	NA	NA
WP_000888777.1\|1347770_1348037_+	biofilm/acid-resistance regulator AriR	NA	NA	NA	NA
WP_012602365.1\|1348149_1348386_+	hypothetical protein	NA	NA	NA	NA
WP_162901047.1\|1348425_1349639_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.1e-168	99.3

DBSCAN-SWA_5

1433678 : 1518677

Escherichia_phage(32.0%)

capsid,portal,holin,terminase,tail,transposase,integrase,protease,head

attL 1449007:1449021|attR 1470899:1470913

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000483766.1\|1433678_1435025_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_000301653.1\|1435132_1437808_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_000616773.1\|1438284_1438932_+	NAAT family transporter YchE	NA	NA	NA	NA
WP_015674648.1\|1439669_1441301_+	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA
WP_000911112.1\|1441386_1442307_+	oligopeptide ABC transporter permease OppB	NA	NA	NA	NA
WP_000979659.1\|1442321_1443230_+	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA
WP_001272969.1\|1443241_1444255_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppD	G9BWD6	Planktothrix_phage	2.0e-14	31.7
WP_000994905.1\|1444251_1445256_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF	G3M9Y6	Bacillus_virus	2.3e-15	30.7
WP_000366959.1\|1445308_1445638_-	YciU family protein	NA	NA	NA	NA
WP_000214516.1\|1445672_1447133_-	cardiolipin synthase	NA	NA	NA	NA
WP_001309467.1\|1447275_1447449_+	YciY family protein	NA	NA	NA	NA
WP_001330021.1\|1447503_1448757_-	voltage-gated potassium channel protein	NA	NA	NA	NA
1449007:1449021	attL	NA	NA	NA	NA
WP_000967595.1\|1449056_1449353_-	YciI family protein	NA	NA	NA	NA
WP_001357407.1\|1449576_1450293_+	TonB system transport protein TonB	NA	NA	NA	NA
WP_000108160.1\|1450332_1450731_-	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_000808672.1\|1450835_1451375_-	septation protein A	NA	NA	NA	NA
WP_000028546.1\|1451404_1452148_-	UPF0259 family protein	NA	NA	NA	NA
WP_015674649.1\|1452503_1453142_+	outer membrane protein OmpW	NA	NA	NA	NA
WP_000113674.1\|1453187_1454318_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	3.4e-103	51.4
WP_000113189.1\|1454295_1454544_-	excisionase	NA	NA	NA	NA
WP_000199473.1\|1457176_1457365_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449175.1\|1457361_1457550_-	cell division inhibitor	NA	NA	NA	NA
WP_000358768.1\|1458121_1458400_+	hypothetical protein	NA	NA	NA	NA
WP_001339605.1\|1458359_1458761_-	hypothetical protein	I6PDF6	Cronobacter_phage	1.0e-09	81.6
WP_001725971.1\|1458772_1458925_-	DUF1391 family protein	M4QQ57	Salicola_phage	1.1e-06	51.1
WP_000362153.1\|1459190_1459610_-	hypothetical protein	K7PK07	Enterobacteria_phage	8.8e-25	65.1
WP_000391950.1\|1459710_1459992_+	helix-turn-helix domain-containing protein	K7PHA1	Enterobacteria_phage	6.5e-24	72.6
WP_000693888.1\|1459975_1460401_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000095673.1\|1460423_1461386_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.6e-69	51.2
WP_000788950.1\|1461392_1462139_+	ATP-binding protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_000450998.1\|1462160_1462931_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
WP_001151165.1\|1462946_1463372_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	93.3
WP_000150294.1\|1463546_1464212_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_000018429.1\|1464392_1464605_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
WP_001329966.1\|1464771_1465044_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.5e-12	49.2
WP_001265092.1\|1465045_1466101_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
WP_000140035.1\|1466101_1466467_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	4.6e-38	66.7
WP_001064916.1\|1466463_1467153_+	antiterminator	I6PDF8	Cronobacter_phage	2.3e-54	46.4
WP_000917768.1\|1467366_1467564_+	hypothetical protein	S5MQK8	Escherichia_phage	6.1e-29	100.0
WP_000935536.1\|1467714_1468764_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	8.8e-199	95.7
WP_000874512.1\|1470037_1471891_+	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
1470899:1470913	attR	NA	NA	NA	NA
WP_000284510.1\|1472041_1472257_+\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_000193278.1\|1472261_1472606_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000369850.1\|1472571_1472844_-	hypothetical protein	NA	NA	NA	NA
WP_000992072.1\|1472949_1473483_+	lysozyme	Q6H9V6	Enterobacteria_phage	2.4e-99	94.4
WP_000347013.1\|1474598_1474739_+	hypothetical protein	NA	NA	NA	NA
WP_001329960.1\|1474871_1475057_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	3.2e-19	90.4
WP_139371347.1\|1475230_1476444_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_000235436.1\|1476773_1477283_+\|terminase	terminase small subunit	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_012602361.1\|1477254_1479183_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.9e-261	66.0
WP_000259002.1\|1479166_1479373_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001441018.1\|1479369_1480962_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.7e-185	61.3
WP_001254003.1\|1480951_1482457_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.7e-100	53.0
WP_000256835.1\|1482493_1482841_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.9e-21	55.9
WP_000522592.1\|1482898_1483927_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	62.2
WP_000201498.1\|1483978_1484362_+	hypothetical protein	NA	NA	NA	NA
WP_001204569.1\|1484354_1484708_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.3e-40	69.2
WP_000974998.1\|1484723_1485257_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.6e-58	66.7
WP_000683079.1\|1485253_1485649_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000235034.1\|1485656_1486403_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.6e-123	93.0
WP_001299690.1\|1486421_1486853_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_000533402.1\|1486879_1487293_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000082400.1\|1487273_1489835_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	87.5
WP_000847312.1\|1489831_1490161_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.7e-58	99.1
WP_015674650.1\|1490160_1490859_+\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	1.3e-126	95.7
WP_000194708.1\|1490869_1491613_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	4.9e-143	94.3
WP_122998302.1\|1491558_1492191_+\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	2.7e-94	92.3
WP_000514741.1\|1492534_1496335_+	DUF1983 domain-containing protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	83.5
WP_001228264.1\|1496402_1497002_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.3e-101	91.5
WP_015674652.1\|1497153_1499217_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	8.2e-148	62.7
WP_001204583.1\|1499213_1499492_+	hypothetical protein	A0A0E3GMJ7	Enterobacteria_phage	3.0e-21	46.2
WP_000355614.1\|1499501_1499798_+	hypothetical protein	NA	NA	NA	NA
WP_001304590.1\|1499915_1500248_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001304589.1\|1500433_1500886_+	VapA/VapB family virulence-associated protein	NA	NA	NA	NA
WP_001056486.1\|1502069_1502570_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|1502655_1502835_-	general stress protein	NA	NA	NA	NA
WP_000443096.1\|1503215_1504022_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209513.1\|1504021_1505215_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000983886.1\|1505226_1506588_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	6.6e-37	40.2
WP_000763524.1\|1506588_1508184_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	1.7e-52	38.5
WP_001194632.1\|1508183_1509746_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1509837_1509882_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285670.1\|1510019_1510901_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1510897_1511518_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_012602328.1\|1511545_1513435_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001291217.1\|1513645_1514521_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_012602329.1\|1514690_1515602_+	membrane protein	NA	NA	NA	NA
WP_001000712.1\|1515701_1516010_+	hypothetical protein	NA	NA	NA	NA
WP_001278895.1\|1516062_1516653_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559262.1\|1516649_1517408_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	7.5e-06	23.4
WP_000422050.1\|1517627_1518677_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_6

1760873 : 1870858

129

Salmonella_phage(31.87%)

capsid,portal,lysis,plate,terminase,tail,transposase,integrase,head

attL 1770614:1770630|attR 1873410:1873426

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000972391.1\|1760873_1761092_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001011797.1\|1761182_1762283_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.7e-176	88.0
WP_000980413.1\|1762279_1762765_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.3e-67	80.6
WP_001282778.1\|1762761_1765839_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	62.9
WP_000763311.1\|1765831_1765951_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001281009.1\|1765965_1766268_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
WP_001207670.1\|1766322_1766838_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	1.4e-88	94.7
WP_000046120.1\|1766847_1768020_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.1e-204	90.3
WP_000905010.1\|1768162_1768729_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	3.8e-87	86.8
WP_071781430.1\|1768759_1769146_+\|tail	phage tail protein	NA	NA	NA	NA
WP_000500074.1\|1769147_1769585_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	6.5e-47	67.1
WP_001030514.1\|1769556_1770159_-\|tail	tail fiber assembly protein	K7P870	Enterobacteria_phage	1.4e-92	85.9
WP_000104793.1\|1770158_1771709_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	8.5e-198	71.3
1770614:1770630	attL	NA	NA	NA	NA
WP_001086811.1\|1771705_1772311_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.9e-109	92.0
WP_000268280.1\|1772303_1773212_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	7.8e-143	90.4
WP_000177590.1\|1773198_1773558_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	9.5e-52	86.6
WP_000993775.1\|1773554_1774133_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	4.2e-94	87.0
WP_000829122.1\|1774201_1774648_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	5.1e-63	85.6
WP_001039940.1\|1774640_1775153_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.1e-66	77.6
WP_001337513.1\|1775248_1775677_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.9e-47	77.3
WP_000727856.1\|1775673_1776051_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.9e-16	40.0
WP_001069929.1\|1776052_1776565_-	lysozyme	E5G6N1	Salmonella_phage	5.2e-88	91.7
WP_000171573.1\|1776545_1776761_-	hypothetical protein	E5G6N0	Salmonella_phage	6.9e-26	78.9
WP_000868175.1\|1776764_1776968_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000673508.1\|1776967_1777432_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	3.2e-76	89.0
WP_000059199.1\|1777527_1778178_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	5.6e-111	95.4
WP_000742511.1\|1778181_1779240_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.9e-181	93.4
WP_000216223.1\|1779256_1780090_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.1e-122	90.6
WP_001098440.1\|1780232_1781999_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_000520381.1\|1781998_1783033_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.2e-168	87.6
WP_139371347.1\|1783162_1784375_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_000460899.1\|1784378_1784573_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.0e-23	92.6
WP_000188449.1\|1784637_1784841_-	hypothetical protein	NA	NA	NA	NA
WP_001346406.1\|1784986_1785556_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	3.2e-38	41.9
WP_000900883.1\|1785571_1785763_+	hypothetical protein	A0A0R6PIH8	Moraxella_phage	6.8e-09	65.9
WP_000343765.1\|1785944_1787165_-\|transposase	ISL3-like element ISEc53 family transposase	NA	NA	NA	NA
WP_000115885.1\|1787183_1787702_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_000290949.1\|1787844_1788897_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_000258570.1\|1789389_1790505_+	putative protein YneK	NA	NA	NA	NA
WP_000210799.1\|1790654_1791845_+	L-arabinose MFS transporter	NA	NA	NA	NA
WP_000885033.1\|1791869_1792535_-	NAAT family transporter MarC	NA	NA	NA	NA
WP_000843419.1\|1792746_1793181_+	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA
WP_000091199.1\|1793201_1793585_+	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.7e-09	32.3
WP_000803527.1\|1793616_1793835_+	multiple antibiotic resistance protein MarB	NA	NA	NA	NA
WP_000012599.1\|1793891_1795331_-	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	2.4e-29	25.7
WP_001022788.1\|1795355_1797029_-	carbohydrate porin	NA	NA	NA	NA
WP_001361816.1\|1797084_1797396_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_001238644.1\|1797423_1798746_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_000722567.1\|1798859_1799171_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_000577189.1\|1799369_1800068_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000087203.1\|1800112_1801012_-	O-acetylserine/cysteine exporter	NA	NA	NA	NA
WP_001054193.1\|1801206_1802394_+	efflux MFS transporter YdeE	NA	NA	NA	NA
WP_000559549.1\|1802425_1802824_-	rhodanese	NA	NA	NA	NA
WP_122998293.1\|1802918_1803890_+	transcriptional regulator FtrA	NA	NA	NA	NA
WP_000901367.1\|1803997_1804093_+	protein MgtS	NA	NA	NA	NA
WP_000592819.1\|1804311_1805202_-	diguanylate cyclase DgcZ	A0A127AWB9	Bacillus_phage	1.4e-19	37.0
WP_000671736.1\|1805456_1805849_-	YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
WP_012602359.1\|1806214_1808260_-	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
WP_000636571.1\|1808396_1809143_+	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_000215553.1\|1809231_1809918_+	DNA-binding transcriptional regulator YdfH	NA	NA	NA	NA
WP_000214712.1\|1810095_1810299_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_000527774.1\|1810334_1811795_-	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	4.3e-42	28.9
WP_120795384.1\|1813771_1813885_+	hypothetical protein	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|1813953_1814187_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_139371347.1\|1814905_1816119_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_000355610.1\|1816634_1816928_-	hypothetical protein	NA	NA	NA	NA
WP_000235984.1\|1816938_1817643_-\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	9.2e-59	61.7
WP_000654151.1\|1817652_1817934_-	hypothetical protein	A0A1X7QHA1	Escherichia_phage	3.1e-18	50.0
WP_000741758.1\|1817930_1820330_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M194	Enterobacteria_phage	3.9e-133	55.2
WP_001228252.1\|1820394_1820994_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	3.4e-102	92.5
WP_000536622.1\|1821061_1824541_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.0
WP_000090891.1\|1824601_1825234_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_000140691.1\|1825170_1825914_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.8e-144	93.5
WP_001152645.1\|1825918_1826617_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.6e-132	98.3
WP_000847348.1\|1826616_1826946_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.8e-57	97.2
WP_000730014.1\|1826942_1829507_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	91.4
WP_000459482.1\|1829475_1829934_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.8e-63	98.3
WP_000479153.1\|1829915_1830338_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.7e-73	100.0
WP_021521695.1\|1830353_1831094_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	2.9e-132	99.2
WP_000683128.1\|1831101_1831497_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	99.2
WP_000975065.1\|1831493_1832072_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	98.4
WP_000752965.1\|1832083_1832437_-\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
WP_085949836.1\|1832575_1833788_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4
WP_000118192.1\|1834146_1835172_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	5.4e-185	95.6
WP_000201478.1\|1835227_1835560_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.7e-51	90.9
WP_000123221.1\|1835569_1836901_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.2e-229	97.7
WP_001595430.1\|1836881_1838483_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.6e-308	98.5
WP_000198149.1\|1838479_1838686_-	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027279.1\|1838682_1840608_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
WP_000453587.1\|1840582_1841128_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001368374.1\|1841516_1841750_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
WP_001571459.1\|1841807_1842218_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-55	79.3
WP_001019606.1\|1842369_1842543_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001309517.1\|1842714_1842870_-	hypothetical protein	NA	NA	NA	NA
WP_120795388.1\|1842948_1843014_-	hypothetical protein	NA	NA	NA	NA
WP_000483766.1\|1843060_1844407_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_071881171.1\|1844470_1844644_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|1844654_1844867_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071769.1\|1845229_1845727_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_001092971.1\|1845723_1846257_-	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_000189916.1\|1846253_1846565_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_000839590.1\|1846569_1846785_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000066484.1\|1847538_1847754_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000087756.1\|1848054_1848267_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_120795389.1\|1848321_1848411_+	hypothetical protein	NA	NA	NA	NA
WP_001310017.1\|1849025_1850048_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	3.2e-201	99.7
WP_001323403.1\|1850047_1850827_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_096974168.1\|1851429_1852586_-\|transposase	IS3-like element IS600 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.8e-67	44.7
WP_001265198.1\|1852681_1853731_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
WP_012304870.1\|1853732_1854011_-	hypothetical protein	NA	NA	NA	NA
WP_000980994.1\|1854077_1854329_-	hypothetical protein	NA	NA	NA	NA
WP_000813254.1\|1854545_1854701_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000323025.1\|1854772_1855060_-	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000534858.1\|1855059_1855299_-	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_071598992.1\|1855323_1855629_+	hypothetical protein	NA	NA	NA	NA
WP_001301033.1\|1855831_1856164_+	protein FlxA	NA	NA	NA	NA
WP_139371347.1\|1856207_1857421_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_096974168.1\|1858052_1859209_-\|transposase	IS3-like element IS600 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.8e-67	44.7
WP_000589003.1\|1859270_1860494_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_001310834.1\|1862160_1862517_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-38	69.6
WP_001151262.1\|1862513_1862936_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	92.0
WP_000054512.1\|1862976_1863942_-	hypothetical protein	U5P0A0	Shigella_phage	2.2e-55	60.2
WP_042034031.1\|1863922_1864387_-	hypothetical protein	NA	NA	NA	NA
WP_165442304.1\|1864395_1865609_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	3.9e-166	97.3
WP_000876958.1\|1866612_1867893_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	3.3e-155	62.1
WP_001360138.1\|1867912_1868023_-	hypothetical protein	NA	NA	NA	NA
WP_000836046.1\|1868080_1869100_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	5.7e-17	26.2
WP_012602314.1\|1869111_1870326_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	2.4e-46	29.0
WP_001314753.1\|1870531_1870858_-	YnfA family protein	A0A218MNG8	uncultured_virus	2.2e-23	54.5
1873410:1873426	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2371468 : 2380324

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998544.1\|2371468_2372581_-	dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	1.3e-14	25.7
WP_001060534.1\|2372583_2374014_-	O7 family O-antigen flippase	NA	NA	NA	NA
WP_001100801.1\|2374017_2374563_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.6e-47	53.9
WP_000857508.1\|2374567_2375446_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.7e-107	64.1
WP_001023616.1\|2375504_2376404_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.2e-28	34.5
WP_000699450.1\|2376403_2377489_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.9e-101	53.9
WP_000183060.1\|2377861_2378755_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_001116062.1\|2378929_2380324_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.4e-18	31.9

DBSCAN-SWA_8

2430653 : 2521614

Enterobacteria_phage(46.43%)

capsid,lysis,holin,tRNA,terminase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000476013.1\|2430653_2432015_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	7.1e-217	99.2
WP_001529307.1\|2432344_2432662_-	hypothetical protein	NA	NA	NA	NA
WP_000807362.1\|2433074_2433974_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
WP_000178552.1\|2434055_2434835_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000844205.1\|2434934_2435975_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000490680.1\|2436022_2437378_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_000823289.1\|2437381_2437666_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182901.1\|2437696_2438149_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000853854.1\|2438158_2439421_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_000289799.1\|2439449_2440304_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129542.1\|2440532_2441585_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000858529.1\|2441841_2443119_+	MFS transporter	NA	NA	NA	NA
WP_000846192.1\|2443115_2444120_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	3.4e-14	29.4
WP_000011934.1\|2444116_2445082_+	sugar kinase	NA	NA	NA	NA
WP_000434040.1\|2445055_2445802_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012602257.1\|2445853_2446672_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	7.2e-23	38.0
WP_000822262.1\|2446736_2447537_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001195577.1\|2447533_2448322_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|2448544_2448817_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000134621.1\|2448937_2449735_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000153067.1\|2449953_2450292_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000405699.1\|2450373_2451408_-	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_000945423.1\|2451423_2453904_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000677183.1\|2453919_2454594_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830459.1\|2454674_2455217_-	fimbrial protein	NA	NA	NA	NA
WP_000599126.1\|2455512_2455794_-	YehE family protein	NA	NA	NA	NA
WP_001005448.1\|2456056_2457166_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001295427.1\|2457297_2459331_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
WP_001215581.1\|2459471_2463278_+	WGR and DUF4132 domain-containing protein	NA	NA	NA	NA
WP_000860772.1\|2463290_2467079_+	WGR and DUF4132 domain-containing protein	NA	NA	NA	NA
WP_000356770.1\|2467088_2470727_+	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_000636915.1\|2470787_2471105_+	hypothetical protein	NA	NA	NA	NA
WP_001563691.1\|2471808_2472897_+	MoxR family ATPase	NA	NA	NA	NA
WP_001294438.1\|2472907_2475187_+	hypothetical protein	NA	NA	NA	NA
WP_001329822.1\|2475179_2476316_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.2e-162	97.4
WP_001329821.1\|2476312_2478313_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001296231.1\|2478437_2478899_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001295430.1\|2478939_2479410_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001308766.1\|2479456_2480176_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001309587.1\|2480172_2481858_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	7.3e-304	99.5
WP_021517447.1\|2483064_2483274_-	DUF4035 domain-containing protein	A0A0P0ZED8	Stx2-converting_phage	4.8e-32	94.2
WP_015674697.1\|2483369_2483744_-\|tail	phage tail assembly chaperone	A0A0P0ZE84	Stx2-converting_phage	2.9e-59	91.9
WP_001275451.1\|2483757_2484471_-	immunoglobulin domain-containing protein	A0A0P0ZD29	Stx2-converting_phage	4.1e-123	95.8
WP_000140683.1\|2484537_2484882_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.0e-50	91.2
WP_000573395.1\|2484878_2485325_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.8e-75	98.6
WP_001007896.1\|2485321_2485672_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.5e-57	97.4
WP_000125984.1\|2485683_2486010_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001063027.1\|2488536_2488758_-	hypothetical protein	H6WZL1	Escherichia_phage	9.9e-36	98.6
WP_000173094.1\|2488802_2490740_-\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	97.8
WP_001487956.1\|2492462_2493023_-\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	6.4e-71	83.9
WP_000057924.1\|2493313_2493679_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	3.5e-62	95.9
WP_000095742.1\|2493720_2493912_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.2e-24	94.8
WP_000828068.1\|2494053_2494380_-	TonB family protein	H6WZK5	Escherichia_phage	1.5e-56	99.1
WP_001082504.1\|2494718_2495186_-\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	1.3e-72	96.1
WP_000675927.1\|2495187_2495301_-	hypothetical protein	A0A2L1IV24	Escherichia_phage	4.3e-11	91.9
WP_001092866.1\|2495522_2496056_-	lysozyme	Q6H9V6	Enterobacteria_phage	6.7e-102	97.2
WP_000284510.1\|2497085_2497301_-\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_001514225.1\|2497376_2497646_-	DUF826 domain-containing protein	S5MW40	Escherichia_phage	1.8e-10	76.4
WP_001304601.1\|2497683_2497866_-	DUF1378 family protein	S5MBZ5	Escherichia_phage	4.6e-23	86.7
WP_000874509.1\|2498002_2499964_-	SASA family carbohydrate esterase	A0A0P0ZBH7	Stx2-converting_phage	3.3e-239	64.1
WP_000271630.1\|2500550_2500979_-	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_000737259.1\|2502248_2503331_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.4e-162	78.7
WP_001204776.1\|2503518_2503902_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	1.5e-55	83.3
WP_001202272.1\|2503919_2504909_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.8e-192	97.9
WP_001065351.1\|2504961_2505219_-	hypothetical protein	Q8W639	Enterobacteria_phage	1.6e-21	70.1
WP_000203851.1\|2505215_2506616_-	replicative DNA helicase	Q8W640	Enterobacteria_phage	1.1e-244	92.0
WP_000988266.1\|2506612_2507512_-	ATP-binding protein	Q8W641	Enterobacteria_phage	2.3e-139	94.8
WP_000092416.1\|2507522_2508515_-	hypothetical protein	Q8W642	Enterobacteria_phage	4.6e-56	96.4
WP_000995578.1\|2508511_2508811_-	hypothetical protein	NA	NA	NA	NA
WP_000618007.1\|2508807_2509032_-	hypothetical protein	NA	NA	NA	NA
WP_000626792.1\|2509028_2509223_-	hypothetical protein	NA	NA	NA	NA
WP_000587264.1\|2509219_2510068_-	Rha family transcriptional regulator	A5LH69	Enterobacteria_phage	3.8e-91	65.4
WP_001090261.1\|2510176_2510884_-	Rha family transcriptional regulator	Q8W645	Enterobacteria_phage	2.0e-106	85.5
WP_000838345.1\|2511219_2511876_+	helix-turn-helix domain-containing protein	Q8W648	Enterobacteria_phage	1.2e-124	97.2
WP_000608410.1\|2511979_2512483_+	helix-turn-helix domain-containing protein	Q8W649	Enterobacteria_phage	8.9e-64	95.5
WP_000141093.1\|2512770_2512977_+	hypothetical protein	Q8W651	Enterobacteria_phage	1.3e-29	94.1
WP_000553972.1\|2513171_2513360_+	hypothetical protein	Q8W652	Enterobacteria_phage	3.9e-09	49.1
WP_001199105.1\|2513365_2513947_+	hypothetical protein	Q8W653	Enterobacteria_phage	5.6e-70	64.5
WP_000179800.1\|2514195_2514513_+	DUF4752 family protein	A0A1I9LJV1	Stx_converting_phage	5.2e-38	82.6
WP_001300189.1\|2514466_2514781_+	hypothetical protein	B1GS43	Salmonella_phage	2.8e-39	86.0
WP_000034228.1\|2514767_2515454_+	ead/Ea22-like family protein	A5VWB1	Enterobacteria_phage	1.8e-38	68.2
WP_001290008.1\|2515450_2515987_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	1.6e-63	67.2
WP_000224220.1\|2515988_2516252_+	hypothetical protein	A0A2P0P958	Salmonella_phage	6.7e-31	73.6
WP_000208055.1\|2516262_2517024_+	hypothetical protein	A0A088CE95	Shigella_phage	2.2e-114	85.0
WP_000457723.1\|2517108_2517351_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	4.3e-32	87.5
WP_001030157.1\|2517354_2517489_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	1.9e-21	95.5
WP_001193437.1\|2517507_2517762_+	excisionase family protein	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
WP_000063649.1\|2517795_2519082_+	DUF3596 domain-containing protein	Q9EY96	Enterobacteria_phage	2.2e-252	99.8
WP_042030043.1\|2519117_2519804_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	8.6e-102	98.9
WP_001216963.1\|2519863_2519971_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|2519951_2520683_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569342.1\|2520687_2521614_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8

DBSCAN-SWA_9

2924638 : 2983508

Escherichia_phage(53.7%)

holin,terminase,tail,transposase,integrase,protease

attL 2940785:2940801|attR 2980394:2980410

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000489677.1\|2924638_2926102_+\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
WP_000166456.1\|2926122_2926482_+	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_000247065.1\|2926587_2927334_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_000198330.1\|2927383_2928673_-	uracil permease	Q9KX94	Enterobacteria_phage	6.6e-63	37.4
WP_001295473.1\|2928758_2929385_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_015674722.1\|2929457_2929691_+	hypothetical protein	NA	NA	NA	NA
WP_001295474.1\|2929709_2930747_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	1.1e-71	43.3
WP_001028626.1\|2930746_2931385_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.4e-29	42.9
WP_000529576.1\|2931556_2933623_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_001121364.1\|2933627_2935169_+	exopolyphosphatase	NA	NA	NA	NA
WP_000017552.1\|2937632_2937785_-	hypothetical protein	G9L6F3	Escherichia_phage	1.7e-18	96.0
WP_000076001.1\|2937802_2937994_+	DUF2633 family protein	G9L6F2	Escherichia_phage	7.3e-27	100.0
WP_001295476.1\|2938304_2938823_+	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	1.3e-62	100.0
WP_000755181.1\|2938838_2939234_+	DUF5384 family protein	G9L6F0	Escherichia_phage	6.0e-15	97.9
WP_165442301.1\|2939259_2940472_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.7e-165	97.0
2940785:2940801	attL	NA	NA	NA	NA
WP_001336051.1\|2940911_2941394_-	DUF2514 domain-containing protein	A0A2R9YJI7	Escherichia_phage	6.9e-74	93.8
WP_000403804.1\|2941390_2942020_-	glycoside hydrolase family 19 protein	G9L6E8	Escherichia_phage	2.9e-112	96.7
WP_000256103.1\|2942009_2942318_-\|holin	phage holin family protein	G9L6E7	Escherichia_phage	4.6e-47	93.1
WP_001276092.1\|2942304_2942709_-	membrane protein	G9L6E6	Escherichia_phage	1.3e-60	94.8
WP_000218909.1\|2943015_2946135_-\|tail	tail fiber domain-containing protein	A5VW57	Enterobacteria_phage	0.0e+00	95.6
WP_001188252.1\|2946330_2946588_+	hypothetical protein	G9L6E3	Escherichia_phage	1.3e-42	100.0
WP_001262275.1\|2946903_2947614_+	hypothetical protein	G9L6E2	Escherichia_phage	1.7e-100	79.4
WP_001260052.1\|2947760_2948393_+	hypothetical protein	NA	NA	NA	NA
WP_000708858.1\|2948491_2948653_+	hypothetical protein	G9L6D9	Escherichia_phage	2.5e-20	100.0
WP_001337645.1\|2948684_2949101_-	hypothetical protein	NA	NA	NA	NA
WP_001248448.1\|2949284_2951759_-	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	98.5
WP_000119863.1\|2951764_2953567_-	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	0.0e+00	97.5
WP_001145639.1\|2953563_2956077_-	hypothetical protein	A0A0F6R8M6	Escherichia_coli_O157_typing_phage	0.0e+00	93.8
WP_000336185.1\|2956089_2956629_-	hypothetical protein	A0A193GYJ4	Enterobacter_phage	2.1e-47	81.8
WP_000568023.1\|2956628_2957093_-	hypothetical protein	G9L6D1	Escherichia_phage	8.4e-85	100.0
WP_001018557.1\|2957092_2959564_-	hypothetical protein	G9L6D0	Escherichia_phage	0.0e+00	99.1
WP_000179259.1\|2959563_2960169_-	hypothetical protein	G9L6C9	Escherichia_phage	1.1e-111	99.5
WP_000424495.1\|2960168_2960492_-	hypothetical protein	A0A0F6R8M8	Escherichia_coli_O157_typing_phage	2.6e-53	98.1
WP_000012377.1\|2960542_2960878_-	hypothetical protein	G9L6C7	Escherichia_phage	7.7e-56	100.0
WP_000627069.1\|2960888_2961326_-	hypothetical protein	G9L6C6	Escherichia_phage	8.2e-74	99.3
WP_000268714.1\|2961377_2962364_-	hypothetical protein	G9L6C5	Escherichia_phage	1.5e-187	99.7
WP_000051494.1\|2962378_2963074_-	peptidase	G9L6C4	Escherichia_phage	1.4e-91	97.0
WP_000133160.1\|2963076_2963373_-	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
WP_000852423.1\|2963369_2965049_-\|tail	tail protein	G9L6C2	Escherichia_phage	1.1e-302	99.3
WP_000335899.1\|2965063_2965270_-	hypothetical protein	G9L6C1	Escherichia_phage	6.0e-11	100.0
WP_000848287.1\|2965970_2966390_+	hypothetical protein	A0A2H4ZJ80	Enterobacter_phage	2.6e-16	84.0
WP_000132860.1\|2966480_2967956_-	hypothetical protein	A0A0F6TK57	Escherichia_coli_O157_typing_phage	1.7e-296	99.4
WP_001090120.1\|2967952_2968627_-\|terminase	terminase small subunit	Q287B7	Escherichia_phage	9.0e-120	100.0
WP_001129687.1\|2968667_2969006_-	hypothetical protein	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	1.2e-56	97.3
WP_000386640.1\|2968998_2969349_-	DUF2591 family protein	G9L6B5	Escherichia_phage	2.5e-41	72.4
WP_000208136.1\|2969348_2970287_-	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	3.1e-118	69.9
WP_001609235.1\|2970288_2970888_-	ead/Ea22-like family protein	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	3.9e-58	86.4
WP_000445433.1\|2970884_2971415_-	hypothetical protein	A0A0F6TJR7	Escherichia_coli_O157_typing_phage	8.5e-57	65.6
WP_001043964.1\|2971476_2971776_-	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	2.7e-52	97.0
WP_001609238.1\|2971938_2972724_-	hypothetical protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	6.1e-152	99.6
WP_000086413.1\|2972720_2973536_-	helix-turn-helix domain-containing protein	Q286X4	Escherichia_phage	3.5e-118	96.0
WP_000402896.1\|2973551_2973752_-	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	1.0e-31	98.5
WP_001282459.1\|2973902_2974133_-	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
WP_000836292.1\|2974287_2974872_+	helix-turn-helix transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.8e-104	99.0
WP_001102257.1\|2975180_2975480_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	3.4e-47	100.0
WP_000985082.1\|2975476_2976376_+	YqaJ viral recombinase family protein	Q858E0	Salmonella_phage	1.6e-156	90.6
WP_000026205.1\|2976385_2977408_+	recombination protein RecT	Q858E1	Salmonella_phage	7.1e-177	92.9
WP_000675390.1\|2977457_2977706_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
WP_001341620.1\|2977863_2978115_+	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	5.2e-41	98.8
WP_000163459.1\|2978107_2978758_+	adenine methylase	G9L699	Escherichia_phage	2.5e-127	99.1
WP_001077943.1\|2978754_2978949_+	DUF1382 family protein	G9L698	Escherichia_phage	2.8e-26	96.9
WP_000954554.1\|2978952_2980203_-\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	8.8e-238	98.8
WP_000138282.1\|2980395_2981973_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
2980394:2980410	attR	NA	NA	NA	NA
WP_001299507.1\|2982041_2983508_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.3e-88	39.1

DBSCAN-SWA_10

3072364 : 3133050

Shigella_phage(31.82%)

tail,transposase,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001346794.1\|3072364_3073102_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|3073233_3074568_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_102818574.1\|3074757_3076105_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-74	52.4
WP_000189223.1\|3077195_3077783_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627804.1\|3077837_3078221_-	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	4.7e-33	70.9
WP_001262726.1\|3078525_3079215_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	1.2e-55	48.8
WP_000997380.1\|3079262_3080300_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|3080506_3080926_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_001308860.1\|3080994_3081693_+\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_000082988.1\|3081724_3084385_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949265.1\|3084498_3085854_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_071781404.1\|3085899_3086223_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000841103.1\|3086219_3087518_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_001235102.1\|3093323_3095897_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000040130.1\|3096026_3096758_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079097.1\|3096754_3097735_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197686.1\|3097869_3098607_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000483766.1\|3098656_3100003_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_000178456.1\|3100315_3100657_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_001386991.1\|3100760_3100808_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_000200124.1\|3100906_3102067_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000225209.1\|3102109_3103231_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168045.1\|3103241_3104312_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
WP_015674728.1\|3104521_3104887_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001212386.1\|3105036_3105555_+	YfiR family protein	NA	NA	NA	NA
WP_000969053.1\|3105544_3106771_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_000589833.1\|3106786_3107269_+	OmpA family protein	NA	NA	NA	NA
WP_000065253.1\|3107345_3107693_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264777.1\|3107734_3108502_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043335.1\|3108532_3109081_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256450.1\|3109099_3109348_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460043.1\|3109484_3110846_-	signal recognition particle protein	NA	NA	NA	NA
WP_001338897.1\|3111012_3111804_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_010723175.1\|3111824_3113111_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001296310.1\|3113165_3113759_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059145.1\|3113882_3114761_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880931.1\|3114846_3116508_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203437.1\|3116656_3116998_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001117840.1\|3117059_3117350_-	RnfH family protein	NA	NA	NA	NA
WP_000600189.1\|3117339_3117816_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_000162574.1\|3117947_3118430_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_012602456.1\|3119235_3120450_+	type II restriction endonuclease	E5E3X4	Burkholderia_phage	7.9e-34	38.6
WP_072095179.1\|3120484_3121888_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	4.0e-106	50.1
WP_000355484.1\|3122320_3123094_+	hypothetical protein	G9IA57	Pseudomonas_phage	2.4e-36	38.5
WP_181143151.1\|3123154_3123247_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	8.3e-05	76.9
WP_039067872.1\|3124561_3124960_-\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	1.3e-09	46.9
WP_000554667.1\|3124956_3125904_-	hypothetical protein	U5P0I1	Shigella_phage	9.5e-51	82.7
WP_000383554.1\|3125907_3126492_-	YmfQ family protein	O22003	Shigella_phage	1.6e-112	99.0
WP_000785298.1\|3126482_3127541_-\|plate	baseplate J/gp47 family protein	M1FQW3	Enterobacteria_phage	5.6e-201	99.1
WP_000424732.1\|3127527_3127953_-	phage GP46 family protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_001201463.1\|3127952_3128501_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	2.8e-95	97.3
WP_000999487.1\|3128500_3129580_-	hypothetical protein	U5P0H6	Shigella_phage	1.7e-205	99.2
WP_015674730.1\|3129576_3130905_-	DNA circularization N-terminal domain-containing protein	Q8SBG8	Shigella_phage	2.7e-245	98.4
WP_139371347.1\|3131836_3133050_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7

DBSCAN-SWA_11

3453658 : 3521555

Enterobacteria_phage(60.0%)

lysis,tRNA,transposase,integrase,protease

attL 3461001:3461018|attR 3533274:3533291

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001297457.1\|3453658_3454417_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_000105561.1\|3454464_3455385_-	agmatinase	NA	NA	NA	NA
WP_000758897.1\|3455520_3456252_-	hypothetical protein	NA	NA	NA	NA
WP_001295380.1\|3456397_3458374_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_001297406.1\|3458382_3458514_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_001303650.1\|3458649_3458865_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|3459168_3460323_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
WP_001112301.1\|3460758_3462153_+	galactose/proton symporter	NA	NA	NA	NA
3461001:3461018	attL	NA	NA	NA	NA
WP_000858396.1\|3462229_3462727_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286500.1\|3462821_3463529_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001300912.1\|3463608_3464340_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593266.1\|3464352_3465303_+	glutathione synthase	NA	NA	NA	NA
WP_001355636.1\|3465411_3465975_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017111.1\|3465974_3466391_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001355637.1\|3466565_3467546_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|3467563_3468268_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|3468285_3468852_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277222.1\|3468848_3469139_+	YggU family protein	NA	NA	NA	NA
WP_001174736.1\|3469146_3469740_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239941.1\|3469732_3470869_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000784004.1\|3471181_3472168_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_000577035.1\|3472212_3472716_+	TRAP transporter small permease	NA	NA	NA	NA
WP_176265401.1\|3473362_3474575_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	9.7e-165	97.0
WP_000745191.1\|3475385_3476393_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394110.1\|3476509_3477556_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|3477731_3478451_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107565.1\|3478634_3478961_-	YggL family protein	NA	NA	NA	NA
WP_000786926.1\|3478960_3479680_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_012602520.1\|3479840_3480893_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|3480920_3481196_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000760323.1\|3481260_3482340_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001339285.1\|3482541_3483798_+	nucleoside permease NupG	NA	NA	NA	NA
WP_000839780.1\|3483846_3485982_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234526.1\|3486374_3487082_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001218869.1\|3487460_3488726_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
WP_000147018.1\|3488980_3490024_+	hypothetical protein	NA	NA	NA	NA
WP_001447126.1\|3491716_3492268_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000332660.1\|3493738_3494338_-	hypothetical protein	NA	NA	NA	NA
WP_000758674.1\|3494322_3494745_-	hypothetical protein	NA	NA	NA	NA
WP_000620430.1\|3494788_3495292_-	P fimbrial tip protein PapF	NA	NA	NA	NA
WP_000723796.1\|3495366_3495888_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_001521270.1\|3496668_3497238_-	P fimbria major subunit PapA	NA	NA	NA	NA
WP_000006214.1\|3498163_3498397_+	major pilus subunit operon transcriptional regulator PapI	NA	NA	NA	NA
WP_000544830.1\|3500694_3501492_+	IS21-like element IS21 family helper ATPase IstB	U5N3V8	Enterobacteria_phage	1.9e-145	99.6
WP_001513409.1\|3502097_3502211_-\|lysis	lysis protein	NA	NA	NA	NA
WP_001110187.1\|3504044_3504305_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000109148.1\|3504346_3504907_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001296373.1\|3504946_3505375_+	DUF417 family protein	NA	NA	NA	NA
WP_000074477.1\|3507423_3508617_-	MFS transporter	NA	NA	NA	NA
WP_001296374.1\|3508752_3510477_+	aerobactin synthase IucA	NA	NA	NA	NA
WP_001287501.1\|3510477_3511425_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001015715.1\|3511424_3513167_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_000750130.1\|3513163_3514441_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_000973519.1\|3514522_3516724_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_011076574.1\|3517274_3517418_-	hypothetical protein	NA	NA	NA	NA
WP_001034083.1\|3517667_3521555_+\|protease	serine protease autotransporter toxin Sat	Q9LA58	Enterobacterial_phage	1.2e-227	39.0
3533274:3533291	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4817333 : 4864615

Burkholderia_phage(31.58%)

holin,tRNA,plate,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001130541.1\|4817333_4818125_+	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	2.6e-46	44.6
WP_000047947.1\|4818139_4818595_-	hypothetical protein	F6MIM0	Haemophilus_phage	1.3e-26	43.3
WP_012602631.1\|4818591_4819299_-	DUF4376 domain-containing protein	A0A0E3JQ06	Enterobacteria_phage	4.1e-14	42.4
WP_000135569.1\|4819295_4820876_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.3e-84	40.8
WP_000359519.1\|4820878_4821595_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	2.4e-22	37.2
WP_000951745.1\|4821587_4822703_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	2.0e-100	51.7
WP_001093498.1\|4822693_4823053_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	4.7e-35	64.2
WP_000679403.1\|4823151_4823853_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	6.4e-12	36.3
WP_000808053.1\|4823862_4824903_-	phage late control D family protein	A4JWL3	Burkholderia_virus	3.9e-74	45.4
WP_001269711.1\|4824890_4825100_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	1.3e-16	60.3
WP_000271439.1\|4825099_4826053_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	1.3e-34	50.0
WP_015674804.1\|4828529_4828658_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000658214.1\|4828617_4828935_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907502.1\|4828985_4829510_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	69.0
WP_000729840.1\|4829509_4830934_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	3.5e-190	69.8
WP_000875309.1\|4830923_4831121_-	hypothetical protein	NA	NA	NA	NA
WP_000404765.1\|4831117_4831573_-	hypothetical protein	NA	NA	NA	NA
WP_000777272.1\|4831719_4832034_-	membrane protein	Q5ZQY8	Pseudomonas_phage	9.2e-19	43.2
WP_000266448.1\|4832046_4832652_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	3.3e-57	57.1
WP_000758106.1\|4832654_4832942_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	8.7e-16	47.7
WP_000343765.1\|4833280_4834501_-\|transposase	ISL3-like element ISEc53 family transposase	NA	NA	NA	NA
WP_000115885.1\|4834519_4835038_-	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_000619864.1\|4835371_4835719_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	2.2e-21	49.0
WP_001290334.1\|4835773_4837123_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000789981.1\|4837647_4839297_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000757333.1\|4839650_4839893_+	polysaccharide production threonine-rich protein	NA	NA	NA	NA
WP_012602636.1\|4840006_4840645_+	YjbF family lipoprotein	NA	NA	NA	NA
WP_000595550.1\|4840641_4841379_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_000745768.1\|4841378_4843475_+	YjbH domain-containing protein	NA	NA	NA	NA
WP_001295279.1\|4843521_4843800_-	periplasmic protein	NA	NA	NA	NA
WP_000202902.1\|4844013_4844424_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001252058.1\|4844517_4845408_-	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_001361466.1\|4845422_4846967_-	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_000695387.1\|4847120_4848311_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000179165.1\|4848675_4849791_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	4.3e-18	31.7
WP_000973665.1\|4849862_4851203_+	maltoporin LamB	NA	NA	NA	NA
WP_000783444.1\|4851445_4852366_+	maltose operon protein MalM	NA	NA	NA	NA
WP_000579094.1\|4852593_4854174_+	SopA family protein	NA	NA	NA	NA
WP_001295693.1\|4854396_4854894_+	chorismate lyase	NA	NA	NA	NA
WP_000455227.1\|4854906_4855779_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000017354.1\|4855933_4858357_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000002907.1\|4858527_4858896_+	diacylglycerol kinase	NA	NA	NA	NA
WP_000646078.1\|4859005_4859614_+	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_021521850.1\|4859686_4861012_+	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_001296638.1\|4861127_4861337_+	CsbD family protein	NA	NA	NA	NA
WP_000416263.1\|4861378_4861894_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_000014225.1\|4862211_4863216_+	DUF2713 family protein	NA	NA	NA	NA
WP_012602639.1\|4863577_4864615_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA

DBSCAN-SWA_13

5200401 : 5278322

Enterobacteria_phage(38.0%)

portal,lysis,terminase,tail,transposase,integrase,protease

attL 5230211:5230226|attR 5255407:5255422

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000181197.1\|5200401_5201322_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.2e-60	51.7
WP_020233658.1\|5201549_5201630_+	hypothetical protein	NA	NA	NA	NA
WP_000648247.1\|5201727_5203824_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000132602.1\|5203870_5204212_-	endoribonuclease SymE	NA	NA	NA	NA
WP_000110093.1\|5204432_5206193_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_001387312.1\|5206192_5207662_-	type I restriction-modification system subunit M	J7I0U9	Acinetobacter_phage	9.6e-34	27.3
WP_000819015.1\|5207728_5210161_-	DEAD/DEAH box helicase family protein	A0A2I5ARD8	Synechococcus_phage	1.0e-08	25.0
WP_012602679.1\|5210920_5212090_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_001314406.1\|5212158_5213115_-	GTPase	NA	NA	NA	NA
WP_000467859.1\|5213125_5213329_-	YbdD/YjiX family protein	NA	NA	NA	NA
WP_001366791.1\|5213378_5215529_-	pyruvate/proton symporter BtsT	NA	NA	NA	NA
WP_000919584.1\|5215906_5217571_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.3e-12	30.1
WP_000118642.1\|5217613_5218885_-	TRAP transporter large permease	NA	NA	NA	NA
WP_000034588.1\|5219418_5220390_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_015674824.1\|5221080_5222733_+	Na+/H+ antiporter	NA	NA	NA	NA
WP_000091599.1\|5222903_5223809_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001292634.1\|5225109_5227401_-	phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase	NA	NA	NA	NA
WP_001385190.1\|5227654_5228149_-	DUF2501 domain-containing protein	NA	NA	NA	NA
WP_000799911.1\|5228197_5228935_-	DNA replication protein DnaC	V5UQI5	Shigella_phage	7.6e-64	50.8
WP_001298056.1\|5228937_5229477_-	primosomal protein DnaT	T1SA92	Salmonella_phage	3.8e-28	62.8
WP_000538188.1\|5229584_5230058_-	threonine/serine exporter	NA	NA	NA	NA
WP_001314410.1\|5230048_5230819_-	threonine/serine exporter ThrE family protein	NA	NA	NA	NA
5230211:5230226	attL	NA	NA	NA	NA
WP_000936639.1\|5231438_5232164_+	response regulator transcription factor	NA	NA	NA	NA
WP_001298690.1\|5232121_5232799_+	DNA-binding transcriptional activator BglJ	NA	NA	NA	NA
WP_000331589.1\|5232836_5233625_-	siderophore-iron reductase FhuF	NA	NA	NA	NA
WP_001350368.1\|5233765_5234002_+	DUF1435 domain-containing protein	NA	NA	NA	NA
WP_001272341.1\|5234561_5235593_-	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA	NA	NA	NA
WP_000204030.1\|5235695_5236109_+	DNA polymerase III subunit psi	NA	NA	NA	NA
WP_001092465.1\|5236077_5236524_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_000870712.1\|5236538_5237216_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_001218285.1\|5237601_5238825_+\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	1.4e-235	98.8
WP_015674827.1\|5239009_5240251_+	hypothetical protein	NA	NA	NA	NA
WP_024193627.1\|5240727_5241024_-	hypothetical protein	U5P0J0	Shigella_phage	1.1e-24	72.2
WP_000335009.1\|5241071_5241950_-	phosphoadenosine phosphosulfate reductase family protein	A0A2R2Z314	Escherichia_phage	8.2e-166	93.1
WP_143759184.1\|5241940_5242429_-	5'-deoxynucleotidase	S5MW55	Escherichia_phage	1.5e-87	97.5
WP_000081282.1\|5242603_5243428_-	DUF2303 family protein	K7PJQ6	Enterobacteria_phage	3.9e-149	98.9
WP_000135684.1\|5243493_5243856_-	hypothetical protein	Q8SBF8	Shigella_phage	1.9e-60	99.2
WP_001311077.1\|5244578_5245271_-	helix-turn-helix domain-containing protein	S5FUZ3	Shigella_phage	2.9e-121	96.5
WP_001191669.1\|5245368_5245629_+	helix-turn-helix transcriptional regulator	K7PJQ8	Enterobacteria_phage	5.4e-41	100.0
WP_000526665.1\|5245621_5246173_+	hypothetical protein	Q8SBF4	Shigella_phage	1.7e-100	99.5
WP_001087308.1\|5246169_5247321_+	Rha family transcriptional regulator	A0A0P0ZE80	Stx2-converting_phage	2.8e-214	99.0
WP_000620697.1\|5247317_5247542_+	hypothetical protein	A5LH70	Enterobacteria_phage	1.3e-38	98.6
WP_015674830.1\|5248353_5248848_+	PerC family transcriptional regulator	U5P0U0	Shigella_phage	2.6e-84	95.1
WP_015674831.1\|5248847_5249501_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	2.4e-125	98.2
WP_000210170.1\|5249497_5249824_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	5.4e-54	100.0
WP_000767103.1\|5249820_5250210_+	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	1.0e-67	98.4
WP_001061380.1\|5250229_5251039_+	KilA-N domain-containing protein	Q8SBE6	Shigella_phage	2.8e-152	98.9
WP_015674832.1\|5251046_5252036_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.3e-195	99.7
WP_001047110.1\|5252049_5252802_+	antitermination protein	K7PGU5	Enterobacteria_phage	5.3e-137	99.2
WP_000917724.1\|5253055_5253259_+	hypothetical protein	A0A291AWX6	Escherichia_phage	6.1e-32	100.0
WP_000799656.1\|5253409_5254462_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.7e-208	100.0
WP_000839591.1\|5254529_5254745_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	5.9e-33	98.6
WP_001135250.1\|5254744_5255242_+	lysozyme RrrD	A0A291AWW2	Escherichia_phage	4.5e-92	100.0
WP_001341210.1\|5255238_5255706_+\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	7.7e-78	100.0
5255407:5255422	attR	NA	NA	NA	NA
WP_001139674.1\|5255693_5255846_+	hypothetical protein	A0A291AWZ2	Escherichia_phage	2.8e-21	98.0
WP_000373425.1\|5256521_5257016_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
WP_000886717.1\|5257015_5259118_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	96.9
WP_001072975.1\|5259114_5259327_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_072134767.1\|5259254_5260835_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	2.1e-289	99.8
WP_077627364.1\|5260779_5262780_+\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	98.0
WP_001097050.1\|5262866_5263190_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_001283153.1\|5263182_5263458_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_000677097.1\|5263469_5264048_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	5.5e-102	99.5
WP_015674834.1\|5264044_5264446_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	3.2e-72	98.5
WP_000211111.1\|5264456_5265200_+	Ig-like domain-containing protein	A5LH35	Enterobacteria_phage	1.5e-131	98.8
WP_001300035.1\|5265260_5265647_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
WP_001161009.1\|5265655_5265985_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_000372004.1\|5265956_5269031_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	94.1
WP_000847317.1\|5269027_5269357_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	3.8e-55	96.3
WP_001179670.1\|5269356_5270055_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	4.9e-129	95.7
WP_000140736.1\|5270059_5270803_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	97.2
WP_028127181.1\|5270700_5271342_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	3.8e-96	85.6
WP_001332187.1\|5271414_5271753_+	hypothetical protein	NA	NA	NA	NA
WP_000515500.1\|5271819_5275233_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.6
WP_001233135.1\|5275303_5275903_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	2.4e-108	97.0
WP_000279166.1\|5275967_5278322_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	1.0e-117	50.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017647

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

44216 : 53997

Escherichia_phage(25.0%)

transposase,integrase

attL 36962:36974|attR 45146:45158

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
36962:36974	attL	NA	NA	NA	NA
WP_000016979.1\|44216_45026_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	7.8e-54	95.5
WP_000239529.1\|45163_45439_-	hypothetical protein	NA	NA	NA	NA
45146:45158	attR	NA	NA	NA	NA
WP_000633911.1\|45432_46077_-	AAA family ATPase	A0A222YXS3	Escherichia_phage	8.8e-40	43.5
WP_001103694.1\|46305_47277_+	hypothetical protein	A0A222YXF2	Escherichia_phage	9.7e-67	42.9
WP_000340835.1\|47281_47674_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_139371347.1\|47722_48936_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_000205700.1\|49308_50055_+	conjugal transfer pilus acetylase TraX	A0A077JBM8	Xanthomonas_phage	2.4e-09	30.8
WP_000704523.1\|50113_50974_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	1.9e-10	23.5
WP_000139321.1\|51076_51637_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_139371347.1\|51727_52940_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_001309245.1\|53078_53291_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_001233838.1\|53535_53997_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	4.2e-20	37.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017646

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017647

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection