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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_016077 Acidaminococcus intestini RyC-MR95, complete sequence 2 crisprs DEDDh,PD-DExK,csa3,cas9,cas1,cas2,csn2,cas4,WYL 1 27 9 0

Results visualization

1. NC_016077
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016077_1 1011010-1014466 TypeII NA
52 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016077_2 1838749-1838857 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_016077_1 1.3|1011178|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011178-1011207 30 NC_016077.1 1834627-1834656 1 0.967

1. spacer 1.3|1011178|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to position: 1834627-1834656, mismatch: 1, identity: 0.967

tgaatacggcattgacattgacaccgatac	CRISPR spacer
tgaatacggcattgacattgacacggatac	Protospacer
************************ *****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_016077_1 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1012889-1012917 29 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 294358-294386 4 0.862
NC_016077_1 1.5|1011310|29|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011310-1011338 29 MG592553 Vibrio phage 1.187.O._10N.286.49.F1, partial genome 19276-19304 6 0.793
NC_016077_1 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011375-1011404 30 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 43113-43142 6 0.8
NC_016077_1 1.13|1011836|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011836-1011865 30 NC_012849 Ralstonia pickettii 12D plasmid pRp12D02, complete sequence 28645-28674 6 0.8
NC_016077_1 1.18|1012165|29|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1012165-1012193 29 NC_014533 Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence 390520-390548 6 0.793
NC_016077_1 1.27|1012758|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1012758-1012786 29 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 449820-449848 6 0.793
NC_016077_1 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1012889-1012917 29 NZ_CP038636 Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence 1012289-1012317 6 0.793
NC_016077_1 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013019-1013048 30 NZ_CP017105 Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence 997912-997941 6 0.8
NC_016077_1 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013019-1013048 30 CP006880 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence 1154061-1154090 6 0.8
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 MK448427 Streptococcus satellite phage Javan321, complete genome 17556-17584 6 0.793
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 NC_006578 [Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence 496-524 6 0.793
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 NZ_CP018936 Bacillus cereus strain JEM-2 plasmid unnamed1, complete sequence 39590-39618 6 0.793
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 NZ_CP053978 Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed2, complete sequence 19080-19108 6 0.793
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 NZ_CP009333 Bacillus thuringiensis strain HD1011 plasmid 4, complete sequence 32985-33013 6 0.793
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 NZ_CP018932 Bacillus cereus strain ISSFR-3F plasmid unnamed, complete sequence 30298-30326 6 0.793
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 NZ_CP053937 Bacillus thuringiensis strain FDAARGOS_792 plasmid unnamed, complete sequence 33066-33094 6 0.793
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 NZ_CP018934 Bacillus cereus strain ISSFR-9F plasmid unnamed1, complete sequence 30433-30461 6 0.793
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 NZ_CP034684 Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence 120912-120940 6 0.793
NC_016077_1 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013940-1013968 29 NZ_CP010087 Bacillus thuringiensis strain 97-27 plasmid unnamed, complete sequence 17867-17895 6 0.793
NC_016077_1 1.3|1011178|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011178-1011207 30 KY398841 Escherichia phage vB_Ecos_CEB_EC3a, complete genome 1556-1585 7 0.767
NC_016077_1 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011375-1011404 30 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 1413823-1413852 7 0.767
NC_016077_1 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011375-1011404 30 NZ_CP023064 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence 1229936-1229965 7 0.767
NC_016077_1 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011375-1011404 30 NZ_CP042264 Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence 294568-294597 7 0.767
NC_016077_1 1.10|1011638|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011638-1011667 30 NC_020846 Vibrio phage pYD21-A genomic sequence 30665-30694 7 0.767
NC_016077_1 1.11|1011704|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011704-1011733 30 NZ_CP017782 Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence 185867-185896 7 0.767
NC_016077_1 1.13|1011836|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011836-1011865 30 NZ_CP032343 Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence 341656-341685 7 0.767
NC_016077_1 1.13|1011836|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011836-1011865 30 NZ_CP032349 Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence 383266-383295 7 0.767
NC_016077_1 1.13|1011836|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011836-1011865 30 NZ_CP012917 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence 386541-386570 7 0.767
NC_016077_1 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1012033-1012062 30 NZ_CP021031 Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence 328283-328312 7 0.767
NC_016077_1 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1012033-1012062 30 CP006879 Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence 369312-369341 7 0.767
NC_016077_1 1.26|1012692|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1012692-1012721 30 NC_007960 Nitrobacter hamburgensis X14 plasmid 2, complete sequence 145003-145032 7 0.767
NC_016077_1 1.26|1012692|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1012692-1012721 30 NZ_CP019314 Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence 51148-51177 7 0.767
NC_016077_1 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1012889-1012917 29 NZ_CP016617 Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence 1178994-1179022 7 0.759
NC_016077_1 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1012889-1012917 29 NC_009621 Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence 386738-386766 7 0.759
NC_016077_1 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013019-1013048 30 MN234194 Arthrobacter phage Loretta, complete genome 21649-21678 7 0.767
NC_016077_1 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013019-1013048 30 MN234168 Arthrobacter phage Ingrid, complete genome 21649-21678 7 0.767
NC_016077_1 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013481-1013510 30 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 1810791-1810820 7 0.767
NC_016077_1 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013481-1013510 30 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 1816514-1816543 7 0.767
NC_016077_1 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013744-1013773 30 NC_016626 Burkholderia sp. YI23 plasmid byi_1p, complete sequence 1267090-1267119 7 0.767
NC_016077_1 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013744-1013773 30 HM102370 Nocardiopsis sp. 25L-1-1c plasmid pNPL1, complete sequence 11972-12001 7 0.767
NC_016077_1 1.46|1014005|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1014005-1014034 30 CP053405 Salmonella enterica strain 2010K-2057 plasmid unnamed2, complete sequence 23552-23581 7 0.767
NC_016077_1 1.49|1014203|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1014203-1014232 30 MG592592 Vibrio phage 1.225.O._10N.261.48.B7, partial genome 2625-2654 7 0.767
NC_016077_1 1.49|1014203|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1014203-1014232 30 MG592547 Vibrio phage 1.181.O._10N.286.46.C9, partial genome 2620-2649 7 0.767
NC_016077_2 2.1|1838789|29|NC_016077|CRISPRCasFinder 1838789-1838817 29 NC_010113 Vibrio sp. 0908 plasmid p0908, complete sequence 21511-21539 7 0.759
NC_016077_2 2.1|1838789|29|NC_016077|CRISPRCasFinder 1838789-1838817 29 NZ_CP046830 Vibrio parahaemolyticus strain 2012AW-0224 plasmid unnamed1, complete sequence 3226-3254 7 0.759
NC_016077_1 1.1|1011046|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011046-1011075 30 NC_010371 Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence 154163-154192 8 0.733
NC_016077_1 1.1|1011046|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011046-1011075 30 NC_011885 Cyanothece sp. PCC 7425 plasmid pP742502, complete sequence 80400-80429 8 0.733
NC_016077_1 1.3|1011178|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011178-1011207 30 MN693279 Marine virus AFVG_25M346, complete genome 19241-19270 8 0.733
NC_016077_1 1.3|1011178|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011178-1011207 30 NC_019524 Enterobacter phage Enc34, complete genome 50866-50895 8 0.733
NC_016077_1 1.4|1011244|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011244-1011273 30 NZ_CP040819 Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence 135822-135851 8 0.733
NC_016077_1 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011375-1011404 30 CP047137 Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence 731561-731590 8 0.733
NC_016077_1 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011441-1011470 30 NZ_KT897276 Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence 30670-30699 8 0.733
NC_016077_1 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011441-1011470 30 NZ_KT897280 Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence 29583-29612 8 0.733
NC_016077_1 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011441-1011470 30 NZ_KT897275 Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence 30705-30734 8 0.733
NC_016077_1 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011441-1011470 30 NZ_KT897277 Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence 30670-30699 8 0.733
NC_016077_1 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011441-1011470 30 NZ_KT897278 Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence 29583-29612 8 0.733
NC_016077_1 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011441-1011470 30 NZ_KT897279 Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence 29583-29612 8 0.733
NC_016077_1 1.10|1011638|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011638-1011667 30 NZ_CP013531 Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence 898202-898231 8 0.733
NC_016077_1 1.10|1011638|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011638-1011667 30 NZ_CP013584 Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence 898201-898230 8 0.733
NC_016077_1 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1012033-1012062 30 NC_010625 Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence 994649-994678 8 0.733
NC_016077_1 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1012033-1012062 30 NZ_CP021931 Lactobacillus plantarum strain TMW 1.1308 plasmid pL11308-1, complete sequence 3396-3425 8 0.733
NC_016077_1 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1012033-1012062 30 NZ_CP050806 Lactobacillus plantarum strain SPC-SNU 72-2 plasmid pLBP752, complete sequence 45836-45865 8 0.733
NC_016077_1 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1012033-1012062 30 HQ634191 Cyanophage Syn10 genomic sequence 12559-12588 8 0.733
NC_016077_1 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1012033-1012062 30 DQ149023 Synechococcus cyanophage syn9, complete genome 137465-137494 8 0.733
NC_016077_1 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1012033-1012062 30 NC_008296 Synechococcus phage syn9, complete genome 137465-137494 8 0.733
NC_016077_1 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1012889-1012917 29 NZ_CP021815 Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence 86308-86336 8 0.724
NC_016077_1 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1012889-1012917 29 NZ_CP015739 Shinella sp. HZN7 plasmid pShin-03, complete sequence 362936-362964 8 0.724
NC_016077_1 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013019-1013048 30 NZ_CP012899 Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence 270843-270872 8 0.733
NC_016077_1 1.35|1013284|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013284-1013313 30 KF926093 Lactococcus phage phiL47, complete genome 116170-116199 8 0.733
NC_016077_1 1.39|1013547|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013547-1013576 30 MT701590 Klebsiella phage Miami, complete genome 242756-242785 8 0.733
NC_016077_1 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013744-1013773 30 NZ_CP006991 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence 433383-433412 8 0.733
NC_016077_1 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013744-1013773 30 NZ_CP021128 Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence 383437-383466 8 0.733
NC_016077_1 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013744-1013773 30 CP007645 Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence 439971-440000 8 0.733
NC_016077_1 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013744-1013773 30 NZ_CP025547 Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence 8846-8875 8 0.733
NC_016077_1 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013744-1013773 30 NZ_CP016619 Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence 772108-772137 8 0.733
NC_016077_1 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013744-1013773 30 NC_015724 Cupriavidus necator N-1 plasmid pBB2, complete sequence 339699-339728 8 0.733
NC_016077_1 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013744-1013773 30 NZ_CP032697 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence 260073-260102 8 0.733
NC_016077_1 1.48|1014137|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1014137-1014166 30 NZ_CP028565 Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 plasmid pGES5_045096, complete sequence 27359-27388 8 0.733
NC_016077_1 1.48|1014137|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1014137-1014166 30 NZ_CP027173 Pseudomonas aeruginosa strain AR_0353 plasmid unnamed1, complete sequence 38483-38512 8 0.733
NC_016077_1 1.48|1014137|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1014137-1014166 30 NZ_KR014105 Aeromonas hydrophila strain WCHAH01 plasmid pGES5, complete sequence 7920-7949 8 0.733
NC_016077_2 2.1|1838789|29|NC_016077|CRISPRCasFinder 1838789-1838817 29 NZ_CP016287 Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence 902348-902376 8 0.724
NC_016077_1 1.1|1011046|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011046-1011075 30 MG592570 Vibrio phage 1.199.B._10N.286.55.C10, partial genome 1540-1569 9 0.7
NC_016077_1 1.1|1011046|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT 1011046-1011075 30 MG592569 Vibrio phage 1.199.A._10N.286.55.C10, partial genome 1540-1569 9 0.7
NC_016077_1 1.36|1013350|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013350-1013379 30 NZ_CP006368 Aureimonas sp. AU20 plasmid pAU20a, complete sequence 91891-91920 9 0.7
NC_016077_1 1.37|1013416|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013416-1013444 29 MN693871 Marine virus AFVG_250M47, complete genome 28762-28790 9 0.69
NC_016077_1 1.37|1013416|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013416-1013444 29 MN694056 Marine virus AFVG_250M46, complete genome 28862-28890 9 0.69
NC_016077_1 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013481-1013510 30 NZ_CP026559 Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p2_tig3, complete sequence 74781-74810 9 0.7
NC_016077_1 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013481-1013510 30 NZ_LT963405 Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP3, complete sequence 102751-102780 9 0.7
NC_016077_1 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013481-1013510 30 NZ_LT985191 Pseudomonas syringae group genomosp. 3 strain CFBP 3800 plasmid PP2, complete sequence 47550-47579 9 0.7
NC_016077_1 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013481-1013510 30 LT985194 Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP3 34933-34962 9 0.7
NC_016077_1 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013481-1013510 30 NZ_LT963413 Pseudomonas syringae isolate CFBP3840 plasmid PP4, complete sequence 15925-15954 9 0.7
NC_016077_1 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013481-1013510 30 NZ_CP026564 Pseudomonas avellanae strain R2leaf plasmid p2_tig5, complete sequence 14960-14989 9 0.7
NC_016077_1 1.43|1013810|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR 1013810-1013838 29 NC_018606 Cardinium endosymbiont cEper1 of Encarsia pergandiella plasmid pCher, complete sequence 17635-17663 9 0.69

1. spacer 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 4, identity: 0.862

cttaatctcgcccccgaggagccggtcga	CRISPR spacer
ctggatctcgccgccgaggaaccggtcga	Protospacer
** .******** *******.********

2. spacer 1.5|1011310|29|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to MG592553 (Vibrio phage 1.187.O._10N.286.49.F1, partial genome) position: , mismatch: 6, identity: 0.793

cgggtcaaagaatctatcgcggaaatggg	CRISPR spacer
cgggacaaagaatttatcgcggagaccag	Protospacer
**** ********.*********.*. .*

3. spacer 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

gccgatggtaatggccttgccggcggcaat----	CRISPR spacer
gccaatggtcatggccttgccgg----aatgcgc	Protospacer
***.***** *************    ***    

4. spacer 1.13|1011836|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NC_012849 (Ralstonia pickettii 12D plasmid pRp12D02, complete sequence) position: , mismatch: 6, identity: 0.8

---ggactatctgacgaaggcgctgattggcta	CRISPR spacer
tctggtct---tgacgaaggcgctgcttggctt	Protospacer
   ** **   ************** ****** 

5. spacer 1.18|1012165|29|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 6, identity: 0.793

cccggccacttcaaaccctttggcgtcat	CRISPR spacer
agccgccacttcaaaccctttgccggcag	Protospacer
  * ****************** ** ** 

6. spacer 1.27|1012758|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 6, identity: 0.793

attaa--gcccttcggaaagcttttctgggt	CRISPR spacer
--tagctgcccttcggaaagctgttctgtgc	Protospacer
  **.  *************** ***** *.

7. spacer 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

cttaatctcgcccccgaggagccggtcga	CRISPR spacer
ctggtccgcgccccggaggagccggtcga	Protospacer
** . .* ****** **************

8. spacer 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 6, identity: 0.8

acagtttggcgaattcttccagaagcttca	CRISPR spacer
gcagattgccgaattcttccagaagcgcga	Protospacer
.*** *** ***************** . *

9. spacer 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 6, identity: 0.8

acagtttggcgaattcttccagaagcttca	CRISPR spacer
gcagattgccgaattcttccagaagcgcga	Protospacer
.*** *** ***************** . *

10. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to MK448427 (Streptococcus satellite phage Javan321, complete genome) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
tgacatactcagtgtgctgttgttcgagt	Protospacer
** ********* *********** .*  

11. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NC_006578 ([Bacillus thuringiensis] serovar konkukian str. 97-27 plasmid pBT9727, complete sequence) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
ttgaatactcagggtactgtttttgaaaa	Protospacer
*   ***********.***** ***** *

12. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018936 (Bacillus cereus strain JEM-2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
ttgaatactcagggtactgtttttgaaaa	Protospacer
*   ***********.***** ***** *

13. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053978 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
ttgaatactcagggtactgtttttgaaaa	Protospacer
*   ***********.***** ***** *

14. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009333 (Bacillus thuringiensis strain HD1011 plasmid 4, complete sequence) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
ttgaatactcagggtactgtttttgaaaa	Protospacer
*   ***********.***** ***** *

15. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018932 (Bacillus cereus strain ISSFR-3F plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
ttgaatactcagggtactgtttttgaaaa	Protospacer
*   ***********.***** ***** *

16. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053937 (Bacillus thuringiensis strain FDAARGOS_792 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
ttgaatactcagggtactgtttttgaaaa	Protospacer
*   ***********.***** ***** *

17. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018934 (Bacillus cereus strain ISSFR-9F plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
ttgaatactcagggtactgtttttgaaaa	Protospacer
*   ***********.***** ***** *

18. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034684 (Bacillus sp. BD59S plasmid pBTBD59S1, complete sequence) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
ttgaatactcagggtactgtttttgaaaa	Protospacer
*   ***********.***** ***** *

19. spacer 1.45|1013940|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010087 (Bacillus thuringiensis strain 97-27 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

tgtcatactcagggtgctgttgttgaata	CRISPR spacer
ttgaatactcagggtactgtttttgaaaa	Protospacer
*   ***********.***** ***** *

20. spacer 1.3|1011178|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to KY398841 (Escherichia phage vB_Ecos_CEB_EC3a, complete genome) position: , mismatch: 7, identity: 0.767

-----tgaatacggcattgacattgacaccgatac	CRISPR spacer
catcgtga-----gcattgacattgacacggataa	Protospacer
     ***     **************** **** 

21. spacer 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 7, identity: 0.767

gccgatggtaatggccttgccggcggcaat	CRISPR spacer
gccgatggtaacggccttgccggtatcctg	Protospacer
***********.***********.. *   

22. spacer 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 7, identity: 0.767

gccgatggtaatggccttgccggcggcaat	CRISPR spacer
gccgatggtaacggccttgccggtatcctg	Protospacer
***********.***********.. *   

23. spacer 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042264 (Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

gccgatggtaatggccttgccggcggcaat	CRISPR spacer
tgctttcgtaatggccttggcggcggcaag	Protospacer
  *  * ************ ********* 

24. spacer 1.10|1011638|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NC_020846 (Vibrio phage pYD21-A genomic sequence) position: , mismatch: 7, identity: 0.767

ttacaaactgtttgattgccttatactgtc	CRISPR spacer
actcaaactgtttgattggctcatactttt	Protospacer
 . *************** **.***** *.

25. spacer 1.11|1011704|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017782 (Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence) position: , mismatch: 7, identity: 0.767

gctggtcggtctgatctcacccttgatggc	CRISPR spacer
gctggtcgatctgatctcaacctggcgttc	Protospacer
********.********** *** *    *

26. spacer 1.13|1011836|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

ggactatctgacgaaggcgctgattggcta	CRISPR spacer
ggacgatctgaccaaggcgctgatgaccag	Protospacer
**** ******* *********** . * .

27. spacer 1.13|1011836|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

ggactatctgacgaaggcgctgattggcta	CRISPR spacer
ggacgatctgaccaaggcgctgatgaccag	Protospacer
**** ******* *********** . * .

28. spacer 1.13|1011836|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 7, identity: 0.767

ggactatctgacgaaggcgctgattggcta	CRISPR spacer
ggacgatctgaccaaggcgctgatgaccag	Protospacer
**** ******* *********** . * .

29. spacer 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021031 (Rhizobium sp. NXC14 plasmid pRspNXC14a, complete sequence) position: , mismatch: 7, identity: 0.767

gatgagagatgctgctgcttgctggtttcc	CRISPR spacer
cagttgtgacgatgctgcttgctggtttcc	Protospacer
 *   * **.* ******************

30. spacer 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 7, identity: 0.767

gatgagagatgctgctgcttgctggtttcc	CRISPR spacer
cagttgtgacgatgctgcttgctggtttcc	Protospacer
 *   * **.* ******************

31. spacer 1.26|1012692|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NC_007960 (Nitrobacter hamburgensis X14 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

ggtcggactggacggtttcgccccagagac	CRISPR spacer
gggcggactggacggttgcgcccaaatgga	Protospacer
** ************** ***** *. *. 

32. spacer 1.26|1012692|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019314 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence) position: , mismatch: 7, identity: 0.767

ggtcggactggacggtttcgccccagagac-----	CRISPR spacer
ggtcggtctggacggtttcgc-----ggaccaccg	Protospacer
****** **************     .***     

33. spacer 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cttaatctcgcccccgaggagccggtcga	CRISPR spacer
cccgatctcgcccccgaggcgccgggcct	Protospacer
*...*************** ***** *  

34. spacer 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.759

cttaatctcgcccccgaggagccggtcga	CRISPR spacer
ggtgatctcgccgacgaggagccggtccg	Protospacer
  *.********  ************* .

35. spacer 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to MN234194 (Arthrobacter phage Loretta, complete genome) position: , mismatch: 7, identity: 0.767

acagtttggcgaattcttccagaagcttca	CRISPR spacer
tgagcttggcgaattcttcaagaagctcat	Protospacer
  **.************** *******.  

36. spacer 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to MN234168 (Arthrobacter phage Ingrid, complete genome) position: , mismatch: 7, identity: 0.767

acagtttggcgaattcttccagaagcttca	CRISPR spacer
tgagcttggcgaattcttcaagaagctcat	Protospacer
  **.************** *******.  

37. spacer 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

catgctccgcatcgactgctgaacgtggag	CRISPR spacer
tccgcgacgcatcgaccgctgaacgtgtag	Protospacer
. .**  *********.********** **

38. spacer 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.767

catgctccgcatcgactgctgaacgtggag	CRISPR spacer
tccgcgacgcatcgaccgctgaacgtgtag	Protospacer
. .**  *********.********** **

39. spacer 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.767

caatctggccacgaacaagccgccgacggt	CRISPR spacer
gacactggccgcgaacaagccgccgatgca	Protospacer
 *  ******.***************.*  

40. spacer 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to HM102370 (Nocardiopsis sp. 25L-1-1c plasmid pNPL1, complete sequence) position: , mismatch: 7, identity: 0.767

caatctggccacgaacaagccgccgacggt	CRISPR spacer
caacggccccacgtacaagccgccgacggc	Protospacer
***.    ***** ***************.

41. spacer 1.46|1014005|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to CP053405 (Salmonella enterica strain 2010K-2057 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

gaacgctatgccgttgaccttcacgttcga	CRISPR spacer
acaatctatgccgttgaccttgacgttcag	Protospacer
. *  **************** ******..

42. spacer 1.49|1014203|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to MG592592 (Vibrio phage 1.225.O._10N.261.48.B7, partial genome) position: , mismatch: 7, identity: 0.767

acttgccacgcaagttccagacttcaacat	CRISPR spacer
aagggaaacgaaagttccagacttcaacaa	Protospacer
*   *  *** ****************** 

43. spacer 1.49|1014203|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to MG592547 (Vibrio phage 1.181.O._10N.286.46.C9, partial genome) position: , mismatch: 7, identity: 0.767

acttgccacgcaagttccagacttcaacat	CRISPR spacer
aagggaaacgaaagttccagacttcaacaa	Protospacer
*   *  *** ****************** 

44. spacer 2.1|1838789|29|NC_016077|CRISPRCasFinder matches to NC_010113 (Vibrio sp. 0908 plasmid p0908, complete sequence) position: , mismatch: 7, identity: 0.759

gcacggcgtcagcgtcatggttaaggatt	CRISPR spacer
ggaaggcgtcagcgccatggttaagccac	Protospacer
* * **********.**********   .

45. spacer 2.1|1838789|29|NC_016077|CRISPRCasFinder matches to NZ_CP046830 (Vibrio parahaemolyticus strain 2012AW-0224 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gcacggcgtcagcgtcatggttaaggatt	CRISPR spacer
ggaaggcgtcagcgccatggttaagccac	Protospacer
* * **********.**********   .

46. spacer 1.1|1011046|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 8, identity: 0.733

tccagtttttggggtacacatcagacttct	CRISPR spacer
tccagttttatgggtacacatcatatgcga	Protospacer
*********  ************ *. .  

47. spacer 1.1|1011046|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NC_011885 (Cyanothece sp. PCC 7425 plasmid pP742502, complete sequence) position: , mismatch: 8, identity: 0.733

tccagtttttggggtacacatcagacttct	CRISPR spacer
tccagtttttggggtccacttcaccggcat	Protospacer
*************** *** ***    . *

48. spacer 1.3|1011178|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to MN693279 (Marine virus AFVG_25M346, complete genome) position: , mismatch: 8, identity: 0.733

tgaatacggcattgacattgacaccgatac	CRISPR spacer
cgaaaacgacattgacattgacacatctga	Protospacer
.*** ***.***************   *. 

49. spacer 1.3|1011178|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NC_019524 (Enterobacter phage Enc34, complete genome) position: , mismatch: 8, identity: 0.733

tgaatacggcattgacattgacaccgatac	CRISPR spacer
gacatacggcattgagattaacaccgggat	Protospacer
 . ************ ***.******. *.

50. spacer 1.4|1011244|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 8, identity: 0.733

agctgtgcaatccttgtcggatggctggcg	CRISPR spacer
tcgtcggagatccgtgtcggatggctggcg	Protospacer
   *  * .**** ****************

51. spacer 1.6|1011375|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gccgatggtaatggccttgccggcggcaat	CRISPR spacer
gccgatggtaatgcccttgccggtcagctc	Protospacer
************* *********. .   .

52. spacer 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897276 (Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence) position: , mismatch: 8, identity: 0.733

aaatgcagctgaaaagaatataataacact	CRISPR spacer
cgttgcagctaaaaagaatataacaaattt	Protospacer
 . *******.************.**  .*

53. spacer 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897280 (Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence) position: , mismatch: 8, identity: 0.733

aaatgcagctgaaaagaatataataacact	CRISPR spacer
cgttgcagctaaaaagaatataacaaattt	Protospacer
 . *******.************.**  .*

54. spacer 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897275 (Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence) position: , mismatch: 8, identity: 0.733

aaatgcagctgaaaagaatataataacact	CRISPR spacer
cgttgcagctaaaaagaatataacaaattt	Protospacer
 . *******.************.**  .*

55. spacer 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897277 (Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence) position: , mismatch: 8, identity: 0.733

aaatgcagctgaaaagaatataataacact	CRISPR spacer
cgttgcagctaaaaagaatataacaaattt	Protospacer
 . *******.************.**  .*

56. spacer 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897278 (Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence) position: , mismatch: 8, identity: 0.733

aaatgcagctgaaaagaatataataacact	CRISPR spacer
cgttgcagctaaaaagaatataacaaattt	Protospacer
 . *******.************.**  .*

57. spacer 1.7|1011441|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KT897279 (Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence) position: , mismatch: 8, identity: 0.733

aaatgcagctgaaaagaatataataacact	CRISPR spacer
cgttgcagctaaaaagaatataacaaattt	Protospacer
 . *******.************.**  .*

58. spacer 1.10|1011638|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 8, identity: 0.733

ttacaaactgtttgattgccttatactgtc	CRISPR spacer
ttccaaactctttgattgccttaagcaagt	Protospacer
** ****** ************* .* . .

59. spacer 1.10|1011638|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 8, identity: 0.733

ttacaaactgtttgattgccttatactgtc	CRISPR spacer
ttccaaactctttgattgccttaagcaagt	Protospacer
** ****** ************* .* . .

60. spacer 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 8, identity: 0.733

gatgagagatgctgctgcttgctggtttcc	CRISPR spacer
tcaagaagatgctgctgcttgccgatttcc	Protospacer
   ...****************.*.*****

61. spacer 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021931 (Lactobacillus plantarum strain TMW 1.1308 plasmid pL11308-1, complete sequence) position: , mismatch: 8, identity: 0.733

gatgagagatgctgctgcttgctggtttcc	CRISPR spacer
cggtaaagttgctgctgcttgctggttggc	Protospacer
 .  *.** ******************  *

62. spacer 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050806 (Lactobacillus plantarum strain SPC-SNU 72-2 plasmid pLBP752, complete sequence) position: , mismatch: 8, identity: 0.733

gatgagagatgctgctgcttgctggtttcc	CRISPR spacer
cggtaaagttgctgctgcttgctggttggc	Protospacer
 .  *.** ******************  *

63. spacer 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to HQ634191 (Cyanophage Syn10 genomic sequence) position: , mismatch: 8, identity: 0.733

gatgagagatgctgctgcttgctggtttcc	CRISPR spacer
gatgttagatgctgctgcttgcttacatag	Protospacer
****  ***************** .. *  

64. spacer 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to DQ149023 (Synechococcus cyanophage syn9, complete genome) position: , mismatch: 8, identity: 0.733

gatgagagatgctgctgcttgctggtttcc	CRISPR spacer
gatgttagatgctgctgcttgcttacatag	Protospacer
****  ***************** .. *  

65. spacer 1.16|1012033|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to NC_008296 (Synechococcus phage syn9, complete genome) position: , mismatch: 8, identity: 0.733

gatgagagatgctgctgcttgctggtttcc	CRISPR spacer
gatgttagatgctgctgcttgcttacatag	Protospacer
****  ***************** .. *  

66. spacer 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021815 (Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence) position: , mismatch: 8, identity: 0.724

cttaatctcgcccccgaggagccggtcga	CRISPR spacer
gaggatctcgccgccgaggagccggtgcg	Protospacer
   .******** *************  .

67. spacer 1.29|1012889|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015739 (Shinella sp. HZN7 plasmid pShin-03, complete sequence) position: , mismatch: 8, identity: 0.724

cttaatctcgcccccgaggagccggtcga	CRISPR spacer
gcgctcctcgcccacaaggagccggtcga	Protospacer
 .   .******* *.*************

68. spacer 1.31|1013019|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012899 (Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence) position: , mismatch: 8, identity: 0.733

acagtttggcgaattcttccagaagcttca	CRISPR spacer
gcagtttggcaaattcttcccgaagtcgtc	Protospacer
.*********.********* ****.. . 

69. spacer 1.35|1013284|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to KF926093 (Lactococcus phage phiL47, complete genome) position: , mismatch: 8, identity: 0.733

cattttcatctctggtattaatggacgtag	CRISPR spacer
tacggtcatggctggtattaatggacgttt	Protospacer
.*.  ****  *****************  

70. spacer 1.39|1013547|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to MT701590 (Klebsiella phage Miami, complete genome) position: , mismatch: 8, identity: 0.733

tcaaaatctaggttgcgtttaatggaatcc	CRISPR spacer
agtggaacaaggttgcgtttaatcgaatcc	Protospacer
   ..* * ************** ******

71. spacer 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.733

caatctggccacgaacaagccgccgacggt	CRISPR spacer
gacgtcggcctcgaacacgccgccgacggc	Protospacer
 *  ..**** ****** ***********.

72. spacer 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.733

caatctggccacgaacaagccgccgacggt	CRISPR spacer
gacgtcggcctcgaacacgccgccgacggc	Protospacer
 *  ..**** ****** ***********.

73. spacer 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.733

caatctggccacgaacaagccgccgacggt	CRISPR spacer
gacgtcggcctcgaacacgccgccgacggc	Protospacer
 *  ..**** ****** ***********.

74. spacer 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025547 (Mycobacterium paragordonae strain 49061 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

caatctggccacgaacaagccgccgacggt	CRISPR spacer
ggctgcggccacgatcaacccgccgacggc	Protospacer
 . * .******** *** **********.

75. spacer 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

caatctggccacgaacaagccgccgacggt	CRISPR spacer
tgagagggctacgatcaagccgccgacggc	Protospacer
..*   ***.**** **************.

76. spacer 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NC_015724 (Cupriavidus necator N-1 plasmid pBB2, complete sequence) position: , mismatch: 8, identity: 0.733

caatctggccacgaacaagccgccgacggt	CRISPR spacer
agcacaagccgcaaacaagccgccgacggt	Protospacer
 .  * .***.*.*****************

77. spacer 1.42|1013744|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032697 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence) position: , mismatch: 8, identity: 0.733

caatctggccacgaacaagccgccgacggt	CRISPR spacer
gtggttcgccacgaacaggccgccggcggt	Protospacer
  . .* **********.*******.****

78. spacer 1.48|1014137|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028565 (Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 plasmid pGES5_045096, complete sequence) position: , mismatch: 8, identity: 0.733

cgctgtcgctgactccgttctggcgtctga	CRISPR spacer
agctgtcgctgacaccgttctggcccagcg	Protospacer
 ************ ********** .   .

79. spacer 1.48|1014137|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027173 (Pseudomonas aeruginosa strain AR_0353 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cgctgtcgctgactccgttctggcgtctga	CRISPR spacer
ggctgtcgctgacaccgttctggcccagcg	Protospacer
 ************ ********** .   .

80. spacer 1.48|1014137|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KR014105 (Aeromonas hydrophila strain WCHAH01 plasmid pGES5, complete sequence) position: , mismatch: 8, identity: 0.733

cgctgtcgctgactccgttctggcgtctga	CRISPR spacer
agctgtcgctgacaccgttctggcccagcg	Protospacer
 ************ ********** .   .

81. spacer 2.1|1838789|29|NC_016077|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

gcacggcgtcagcgtcatggttaaggatt	CRISPR spacer
cttcggcgccagcgtcatggtgaagggcg	Protospacer
 . *****.************ ****.. 

82. spacer 1.1|1011046|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to MG592570 (Vibrio phage 1.199.B._10N.286.55.C10, partial genome) position: , mismatch: 9, identity: 0.7

tccagtttttggggtacacatcagacttct	CRISPR spacer
ctttctttttggagttcacatcagacttaa	Protospacer
...  *******.** ************  

83. spacer 1.1|1011046|30|NC_016077|PILER-CR,CRISPRCasFinder,CRT matches to MG592569 (Vibrio phage 1.199.A._10N.286.55.C10, partial genome) position: , mismatch: 9, identity: 0.7

tccagtttttggggtacacatcagacttct	CRISPR spacer
ctttctttttggagttcacatcagacttaa	Protospacer
...  *******.** ************  

84. spacer 1.36|1013350|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 9, identity: 0.7

aggatttccgtcagccacgagcaatggtta	CRISPR spacer
ggcggttccgtcagcgacgagcaatgaagg	Protospacer
.* . ********** **********.  .

85. spacer 1.37|1013416|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to MN693871 (Marine virus AFVG_250M47, complete genome) position: , mismatch: 9, identity: 0.69

ctgctgtctgaaatgcgaatgacaataat	CRISPR spacer
atgctgtctgaaatgcgtatgagccgtcc	Protospacer
 **************** ****      .

86. spacer 1.37|1013416|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to MN694056 (Marine virus AFVG_250M46, complete genome) position: , mismatch: 9, identity: 0.69

ctgctgtctgaaatgcgaatgacaataat	CRISPR spacer
atgctgtctgaaatgcgtatgagccgtcc	Protospacer
 **************** ****      .

87. spacer 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026559 (Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p2_tig3, complete sequence) position: , mismatch: 9, identity: 0.7

catgctccgcatcgactgctgaacgtggag	CRISPR spacer
gccactccgcatcgcgtgctgaacgtgtcc	Protospacer
  ..**********  ***********   

88. spacer 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963405 (Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP3, complete sequence) position: , mismatch: 9, identity: 0.7

catgctccgcatcgactgctgaacgtggag	CRISPR spacer
gccactccgcatcgcgtgctgaacgtgtcc	Protospacer
  ..**********  ***********   

89. spacer 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985191 (Pseudomonas syringae group genomosp. 3 strain CFBP 3800 plasmid PP2, complete sequence) position: , mismatch: 9, identity: 0.7

catgctccgcatcgactgctgaacgtggag	CRISPR spacer
gccactccgcatcgcgtgctgaacgtgtcc	Protospacer
  ..**********  ***********   

90. spacer 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to LT985194 (Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP3) position: , mismatch: 9, identity: 0.7

catgctccgcatcgactgctgaacgtggag	CRISPR spacer
gccactccgcatcgcgtgctgaacgtgtcc	Protospacer
  ..**********  ***********   

91. spacer 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963413 (Pseudomonas syringae isolate CFBP3840 plasmid PP4, complete sequence) position: , mismatch: 9, identity: 0.7

catgctccgcatcgactgctgaacgtggag	CRISPR spacer
gccactccgcatcgcgtgctgaacgtgtcc	Protospacer
  ..**********  ***********   

92. spacer 1.38|1013481|30|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026564 (Pseudomonas avellanae strain R2leaf plasmid p2_tig5, complete sequence) position: , mismatch: 9, identity: 0.7

catgctccgcatcgactgctgaacgtggag	CRISPR spacer
gccactccgcatcgcgtgctgaacgtgtcc	Protospacer
  ..**********  ***********   

93. spacer 1.43|1013810|29|NC_016077|CRISPRCasFinder,CRT,PILER-CR matches to NC_018606 (Cardinium endosymbiont cEper1 of Encarsia pergandiella plasmid pCher, complete sequence) position: , mismatch: 9, identity: 0.69

ttcctgctgtgtaagttttgataatgctc	CRISPR spacer
actttgctttgtaagttttgataatagct	Protospacer
 ...**** ****************. ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 778234 : 838143 51 uncultured_Mediterranean_phage(15.79%) protease,tRNA,transposase NA
DBSCAN-SWA_2 1040351 : 1046357 7 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_3 1297554 : 1354339 51 Bacillus_phage(18.75%) tail,transposase,integrase attL 1293669:1293685|attR 1301726:1301742
DBSCAN-SWA_4 1359817 : 1393781 38 Streptococcus_phage(48.15%) portal,terminase,capsid,tail,plate,head,protease NA
DBSCAN-SWA_5 1398560 : 1448614 58 Clostridium_phage(33.33%) transposase,portal,terminase,capsid,plate,tail,integrase attL 1428543:1428559|attR 1445679:1445695
DBSCAN-SWA_6 1863698 : 1871694 11 Lactobacillus_phage(16.67%) NA NA
DBSCAN-SWA_7 1874772 : 1984096 118 Streptococcus_phage(34.0%) transposase,portal,terminase,protease,capsid,tail,plate,head,integrase attL 1872078:1872092|attR 1882628:1882642
DBSCAN-SWA_8 1987868 : 1999935 15 Streptococcus_phage(54.55%) NA NA
DBSCAN-SWA_9 2160788 : 2196492 29 Bacillus_phage(33.33%) protease,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage