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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017596 Streptococcus pyogenes Alab49, complete sequence 2 crisprs DinG,csm6,cas3,DEDDh,csa3 0 0 110 0

Results visualization

1. NC_017596
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017596_1 957147-957248 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017596_2 1065464-1065574 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2880 2 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_2 10951 : 14786 3 Phaeocystis_globosa_virus(50.0%) tRNA,protease NA
DBSCAN-SWA_3 30165 : 58298 23 Streptococcus_phage(15.38%) transposase NA
DBSCAN-SWA_4 61501 : 62518 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_5 88344 : 101550 7 Bacillus_virus(25.0%) tRNA NA
DBSCAN-SWA_6 108661 : 113701 7 Streptococcus_phage(66.67%) tRNA NA
DBSCAN-SWA_7 144105 : 149359 4 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_8 155902 : 159754 2 Pandoravirus(50.0%) tRNA NA
DBSCAN-SWA_9 168580 : 177988 8 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_10 184728 : 185871 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_11 196447 : 204068 7 Bacillus_phage(75.0%) NA NA
DBSCAN-SWA_12 207218 : 208664 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_13 231006 : 231846 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_14 236053 : 240706 4 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_15 247499 : 254094 6 Brazilian_cedratvirus(33.33%) NA NA
DBSCAN-SWA_16 260296 : 262283 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_17 273023 : 273656 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_18 280435 : 281500 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_19 288126 : 300304 10 Bacillus_phage(40.0%) protease NA
DBSCAN-SWA_20 315604 : 327885 14 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_21 332318 : 434737 100 Streptococcus_phage(20.0%) tRNA,transposase,protease,bacteriocin NA
DBSCAN-SWA_22 440692 : 444685 4 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_23 456919 : 459682 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_24 464887 : 466014 1 Shigella_phage(100.0%) transposase NA
DBSCAN-SWA_25 485229 : 488804 4 Phage_TP(33.33%) tRNA NA
DBSCAN-SWA_26 492352 : 496713 5 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_27 501467 : 502664 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_28 507473 : 512154 3 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_29 519383 : 523461 5 Trichoplusia_ni_ascovirus(50.0%) NA NA
DBSCAN-SWA_30 526466 : 540039 11 Streptococcus_phage(57.14%) tRNA,transposase NA
DBSCAN-SWA_31 548064 : 557543 8 Streptococcus_phage(80.0%) integrase attL 540915:540928|attR 550996:551009
DBSCAN-SWA_32 563332 : 564256 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_33 570088 : 573777 3 Pneumococcus_phage(33.33%) NA NA
DBSCAN-SWA_34 583810 : 584854 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_35 589495 : 591192 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_36 594518 : 608780 12 Bacillus_virus(20.0%) NA NA
DBSCAN-SWA_37 614203 : 614899 1 Sulfolobus_monocaudavirus(100.0%) NA NA
DBSCAN-SWA_38 621409 : 644145 24 Streptococcus_phage(30.77%) tRNA,protease NA
DBSCAN-SWA_39 649043 : 649754 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_40 661182 : 669718 8 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_41 673959 : 681979 6 unidentified_phage(25.0%) tRNA NA
DBSCAN-SWA_42 690177 : 700401 11 Bacillus_phage(33.33%) protease NA
DBSCAN-SWA_43 709396 : 716783 5 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_44 728487 : 732131 3 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_45 735523 : 738270 3 Escherichia_phage(66.67%) NA NA
DBSCAN-SWA_46 741501 : 746475 5 Only_Syngen_Nebraska_virus(50.0%) NA NA
DBSCAN-SWA_47 749659 : 751567 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_48 755797 : 757561 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_49 760884 : 761874 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_50 776555 : 778388 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_51 784787 : 786437 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_52 796946 : 805397 9 Stx2-converting_phage(25.0%) NA NA
DBSCAN-SWA_53 810416 : 814076 3 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_54 820211 : 853652 33 Bacillus_phage(17.65%) NA NA
DBSCAN-SWA_55 859192 : 863121 3 Cafeteria_roenbergensis_virus(66.67%) NA NA
DBSCAN-SWA_56 882306 : 884545 2 Mycobacterium_phage(50.0%) NA NA
DBSCAN-SWA_57 889067 : 896684 5 Hokovirus(33.33%) NA NA
DBSCAN-SWA_58 901291 : 904044 3 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_59 908318 : 1018516 123 Streptococcus_phage(36.0%) tRNA,integrase,capsid,holin,terminase,tail,portal,head attL 967030:967089|attR 1012393:1012488
DBSCAN-SWA_60 1027719 : 1029258 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_61 1034034 : 1034775 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_62 1049336 : 1119648 62 Enterococcus_phage(16.67%) tRNA,transposase,protease NA
DBSCAN-SWA_63 1127960 : 1160229 44 Streptococcus_phage(63.16%) integrase,tail,holin attL 1131400:1131419|attR 1157602:1157621
DBSCAN-SWA_64 1165570 : 1179915 11 Klosneuvirus(14.29%) tRNA,protease NA
DBSCAN-SWA_65 1190583 : 1192425 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_66 1197941 : 1202483 5 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_67 1213210 : 1215681 2 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_68 1222473 : 1298379 80 Temperate_phage(51.79%) tRNA,integrase,capsid,holin,terminase,portal,tail attL 1285803:1285820|attR 1313063:1313080
DBSCAN-SWA_69 1308951 : 1327457 17 Streptococcus_phage(37.5%) tRNA NA
DBSCAN-SWA_70 1337172 : 1350323 11 Bacillus_virus(42.86%) NA NA
DBSCAN-SWA_71 1355558 : 1363396 7 Streptococcus_phage(50.0%) bacteriocin NA
DBSCAN-SWA_72 1366465 : 1367167 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_73 1376209 : 1382813 6 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_74 1386505 : 1398234 11 Synechococcus_phage(25.0%) NA NA
DBSCAN-SWA_75 1404839 : 1405565 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_76 1408925 : 1410386 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_77 1416823 : 1418101 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_78 1423528 : 1424263 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_79 1429169 : 1432413 2 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_80 1442930 : 1443485 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_81 1446651 : 1461663 12 Organic_Lake_phycodnavirus(28.57%) NA NA
DBSCAN-SWA_82 1467920 : 1470619 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_83 1483992 : 1509638 26 Bacillus_phage(20.0%) NA NA
DBSCAN-SWA_84 1513034 : 1513883 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_85 1518789 : 1523533 7 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_86 1527990 : 1532332 5 Moraxella_phage(50.0%) tRNA NA
DBSCAN-SWA_87 1537668 : 1538559 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_88 1543866 : 1545471 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_89 1559401 : 1565179 3 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_90 1578539 : 1583111 8 Escherichia_phage(25.0%) integrase attL 1579834:1579847|attR 1581742:1581755
DBSCAN-SWA_91 1587420 : 1588764 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_92 1593247 : 1593979 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_93 1599237 : 1610690 8 Synechococcus_phage(25.0%) tRNA,protease NA
DBSCAN-SWA_94 1617315 : 1618449 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_95 1621812 : 1624032 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_96 1627650 : 1629837 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_97 1634768 : 1639699 4 Pandoravirus(25.0%) NA NA
DBSCAN-SWA_98 1643974 : 1645670 3 Anomala_cuprea_entomopoxvirus(33.33%) NA NA
DBSCAN-SWA_99 1661303 : 1667070 5 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_100 1675161 : 1681175 5 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_101 1685511 : 1686285 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_102 1690243 : 1691245 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_103 1695964 : 1704502 7 uncultured_virus(25.0%) protease NA
DBSCAN-SWA_104 1713653 : 1715195 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_105 1721883 : 1723779 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_106 1730325 : 1735853 6 Enterococcus_phage(66.67%) NA NA
DBSCAN-SWA_107 1739727 : 1775338 40 Streptococcus_phage(45.45%) tRNA,transposase,integrase,holin,bacteriocin attL 1746659:1746679|attR 1761524:1761544
DBSCAN-SWA_108 1788818 : 1790186 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_109 1799233 : 1819626 18 Streptococcus_phage(20.0%) tRNA NA
DBSCAN-SWA_110 1823155 : 1826444 3 Staphylococcus_prophage(50.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage