CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016079	Pelagibacterium halotolerans B2 plasmid pPHB2, complete sequence	0 crisprs	NA	0	0	0	0
NC_016078	Pelagibacterium halotolerans B2, complete sequence	1 crisprs	csa3,cas3,WYL,DinG,RT,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016078_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016078_1

2946198-2946279

Orphan

Consensus_repeat	Method
GAAGCGCTTCCAGGATAAGTGGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016078_1

>merge|NC_016078|1|2946198-2946279|CRISPRCasFinder
GAAGCGCTTCCAGGATAAGTGGCTACCGGTTATCCGGTTCGGAAGCGCGACAAGACTTGGAGCGCTTCCAGGATAAGTGGCT

>NC_016078|1|1|2946198-2946279|CRISPRCasFinder
GAAGCGCTTCCAGGATAAGTGGCT	ACCGGTTATCCGGTTCGGAAGCGCGACAAGACTT
GGAGCGCTTCCAGGATAAGTGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_016078.1\|WP_014132089.1\|2934449_2935922_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|227123
NC_016078.1\|WP_014132099.1\|2946312_2946465_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223687
NC_016078.1\|WP_014132092.1\|2937503_2940146_-\|DUF2339-domain-containing-protein	unknown	unknown	gnl\|CDD\|378390
NC_016078.1\|WP_014132100.1\|2946640_2947294_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224103
NC_016078.1\|WP_014132107.1\|2950617_2950773_-\|hypothetical-protein	unknown	unknown	unknown
NC_016078.1\|WP_014132095.1\|2942153_2943248_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235064
NC_016078.1\|WP_148264182.1\|2949766_2950536_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_016078.1\|WP_158308082.1\|2935918_2936710_-\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|214615
NC_016078.1\|WP_014132112.1\|2952137_2953421_-\|DUF560-domain-containing-protein	unknown	unknown	gnl\|CDD\|368004
NC_016078.1\|WP_014132098.1\|2945823_2946195_+\|DUF4260-domain-containing-protein	unknown	unknown	gnl\|CDD\|379455
NC_016078.1\|WP_014132104.1\|2948745_2949513_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NC_016078.1\|WP_014132096.1\|2943426_2944062_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
NC_016078.1\|WP_139305114.1\|2936887_2937454_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NC_016078.1\|WP_014132102.1\|2947879_2948614_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NC_016078.1\|WP_014132109.1\|2951110_2951431_-\|hypothetical-protein	unknown	unknown	unknown
NC_016078.1\|WP_014132094.1\|2941221_2942157_-\|prephenate/arogenate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|236034
NC_016078.1\|WP_014132110.1\|2951427_2951826_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|367615
NC_016078.1\|WP_014132093.1\|2940261_2941230_+\|DUF2125-domain-containing-protein	unknown	unknown	gnl\|CDD\|370743
NC_016078.1\|WP_050811726.1\|2947335_2947860_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_016078.1\|WP_050811824.1\|2944061_2945789_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226849

Protein	Function_ID	Function_description	E-value
NC_016078.1\|WP_014132089.1\|2934449_2935922_-\|M48-family-metalloprotease	gnl\|CDD\|227123	COG4784, COG4784, Putative Zn-dependent protease [General function prediction only].	1.62981e-119
NC_016078.1\|WP_014132099.1\|2946312_2946465_-\|hypothetical-protein	gnl\|CDD\|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	0.0001405
NC_016078.1\|WP_014132092.1\|2937503_2940146_-\|DUF2339-domain-containing-protein	gnl\|CDD\|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	3.29563e-44
NC_016078.1\|WP_014132100.1\|2946640_2947294_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	3.48736e-24
NC_016078.1\|WP_014132095.1\|2942153_2943248_-\|histidinol-phosphate-transaminase	gnl\|CDD\|235064	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated.	0
NC_016078.1\|WP_148264182.1\|2949766_2950536_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	8.12828e-29
NC_016078.1\|WP_158308082.1\|2935918_2936710_-\|thermonuclease-family-protein	gnl\|CDD\|214615	smart00318, SNc, Staphylococcal nuclease homologues.	5.03838e-21
NC_016078.1\|WP_014132098.1\|2945823_2946195_+\|DUF4260-domain-containing-protein	gnl\|CDD\|379455	pfam14079, DUF4260, Domain of unknown function (DUF4260). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 114 and 126 amino acids in length. There is a conserved GLK sequence motif.	1.19327e-39
NC_016078.1\|WP_014132104.1\|2948745_2949513_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.66842e-120
NC_016078.1\|WP_014132096.1\|2943426_2944062_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	1.02505e-31
NC_016078.1\|WP_139305114.1\|2936887_2937454_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	2.48896e-68
NC_016078.1\|WP_014132102.1\|2947879_2948614_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.99056e-09
NC_016078.1\|WP_014132112.1\|2952137_2953421_-\|DUF560-domain-containing-protein	gnl\|CDD\|368004	pfam04575, DUF560, Protein of unknown function (DUF560). Family of hypothetical bacterial proteins.	1.02986e-17
NC_016078.1\|WP_014132094.1\|2941221_2942157_-\|prephenate/arogenate-dehydrogenase-family-protein	gnl\|CDD\|236034	PRK07502, PRK07502, prephenate/arogenate dehydrogenase family protein.	0
NC_016078.1\|WP_014132110.1\|2951427_2951826_-\|PH-domain-containing-protein	gnl\|CDD\|367615	pfam03703, bPH_2, Bacterial PH domain. Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.	3.97929e-10
NC_016078.1\|WP_014132093.1\|2940261_2941230_+\|DUF2125-domain-containing-protein	gnl\|CDD\|370743	pfam09898, DUF2125, Uncharacterized protein conserved in bacteria (DUF2125). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.52672e-48
NC_016078.1\|WP_050811726.1\|2947335_2947860_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.30772e-22
NC_016078.1\|WP_050811824.1\|2944061_2945789_+\|hypothetical-protein	gnl\|CDD\|226849	COG4425, COG4425, Predicted membrane protein [Function unknown].	0

>NC_016078.1|WP_014132098.1|2945823_2946195_+|DUF4260-domain-containing-protein
MIHAVLWQRIEGFAVLAAGLALFVHLNDALPWWAALLIFFAPDLSFIAYALGPRVGAFCYNLVHIYGLGAALLAIGLLAAVPLAAALGALWLAHCGLDRMLGYGLKSPEGFSITHLGRIGRQK
>NC_016078.1|WP_050811824.1|2944061_2945789_+|hypothetical-protein
MPVFGPIRPLRHFVLGQPAGGVFLGLVFFALSLTPSLIPRHFLIQGILSGCVFAAGYGIGVFLEWLWNFMGLKPPPRRWVRYAQWAMIGTGAAFAFICLWLSTGWQNSIRAVMDMPSVESNQPIYVVAIAIVPALILIALGTLIVSGVRLVSGWLRLIIPPRVALVGGIIVVMIVTNITVNGVLGRWAFAAADRFYANLDTLAGAYEEQPTDPLRSGSAASLVSWSTIGLDARVYVQSGPTAAEIEAITDKPAIDPLRVYVGLRSAETVEQRARLALAEMLRVGAFERSVLVLIMPVGTGWVQPPAIDTLEFLHGGDVASVALQYSYLTSWLSLVSEPDVGVESARALFDIVYRYWSTLPVETRPELYLHGLSLGAYSSQASINLFDILSNPIAGALWVGPPFASQIWREVTGARNPLSPAWLPQVGDGSIVRYANQFSGLEADGRTWGPLRLFYLQYGSDPVVFFDPGMIYRSPAWLDGQRAPDVSAALNWYPVVTFLQLAFDLVLAQTSPVGYGHVYAPQHYLKAWIEVTEPEGWTRAELDTLTERLTRTGTYRDIVGGWFREPAIALARPGQ
>NC_016078.1|WP_014132096.1|2943426_2944062_+|exopolysaccharide-biosynthesis-protein
MTSTETEPTPVEVQIGGLLDALHASQQKPDPRFTVASLIAALGVHSHIVVILVFSVLNMVPGPPGYGGTIAFAMIGIALAMLVNAPLTLPGWIRRRKLPAKALMRVTKLFARMAGLMGRFSRPRLKMASAPALRPALALFVIAVSLPMMLPIPFINAVPNTGICILCLGWINRDAFVIVAGIVIALVGLTIAGAAIWGAWHLANAAVGAVQ
>NC_016078.1|WP_014132095.1|2942153_2943248_-|histidinol-phosphate-transaminase
MSDRPVPQPGILTIAPYVPGRSSAPGKKAGDTIKLSANESPLGASPKAIEAVKAAAEKLEIYPEGSSRELRAALGEVHGIDPERIVVGAGSDEVLHLLAQTYIGDGDEAVMSQYGFMVYPIITRAAGGTPVVAPETDYCADVDAILAAVTNKTKIVFLANPNNPTGTYLTAEELDRLHAGLPANVLLVIDSAYAEYVTAADYGVGISLVERSENVVMVRTFSKMGLAAARVGWLYGPAHLVDAVNRIRGPFNVSVLGQVAAEAATRDVAFTKALRAHNDKWRVWLSEEIGSNRLRVLPSQGNFILVLFADAEAARAANGALLERGLVVREMGGYGIANGLRISIGSEAAMKAVATTLKDFMDGQ
>NC_016078.1|WP_014132094.1|2941221_2942157_-|prephenate/arogenate-dehydrogenase-family-protein
MIEKLALIGIGLIGSSIARGARRAGLAKTIAISTRRAETLDEARALGLGDIYTTDAAEAVKDADLVILCSPVGSYEAIAKQIAPHLKPGAILSDVGSVKGHVVDVVGPHVPAGVHFVPGHPLAGTEHSGPSAGFADLFENRWCVLTPPEGTDPGAVETLSAFWKGLGSNVEAMSPGHHDMVLAITSHVPHLVAYNIVGTVDDLEQDTKSEVIKFSASGFRDFTRIAASDPVMWRDVFLTNRDAVLEMLGRFLEDLSVLQRAVRVGDGEALETLFTRTRAVRRSIIAAGQETAAPDFGRPHGDAKPAEPGSE
>NC_016078.1|WP_014132093.1|2940261_2941230_+|DUF2125-domain-containing-protein
MKRFVIMIVAVVAVSVLWMGGWFYIAGQIRAEIGYLAQADGVTQPRLVCDRLDIGGAPFSFSPRCTDARITSGDVTVELAAITGTALFYTPTHIQLFATGPARIADAFTGATQEVRWSNLHASLRLDDGMIERFSALADDLVYADMLIGETVIGTAAHGEIHLLDATPADSPPGTGAIFDAYVTLEDVTSQTNDIANGRLVVDARLSGLPDPALWGDPQVLGFWQALGGELALRSIEASADGLSLTAQGAASLTDAGLVNGNLEIASQGVADRIATLVGDPSVARIVLGSPGEDGVSHQTLQVSDGTVVVGIIPVASLPPLF
>NC_016078.1|WP_014132092.1|2937503_2940146_-|DUF2339-domain-containing-protein
MADYLLIIILILAFMAFQAHLDIRALKRRVGVLEAGASARADDSAEREAASAAPTAEPAAEPEPASNVAQGPWMAAQARVAAGVGEERETGGGPGTEKRGFNWEHMLGVRLPVWGGAALLLFAAFLFASYAMEQGVFTPAVRVWACGAGAAIFLAAAFFARWRKIANWGRISGALAAVAIGLGYATCYLATAVFAFWPPLWGAAGSGLVGLVAIAIALVFGRLVLVLGLLGGYLAPVLLGELADGWTLLAYLTTVLVASHAVAGWRGWWTSALFSSGLALLWGAVWGFFIHNPRWDSGLDLTLWLLAIAMAPVAAELVARADERIAIMRRDGPVAAAGGSALMLILLGVEALPGAAFWPGFVAWMAFLAIASVLRPRRMDLAGVAMGGFVVALVLWRDPEPGVRLGVLIPALPIVLGAAVIHIAAGRAQRIWASAGVAILMVSVLSSLVDFDGWAGARDVPQIWAILCVGLAVAIVAILVALRGTSTSRQIAPPLAAGASGLASVAIGLVVEPGYYALSAALQVAGLGLVFWRYRVRTLLYLAMVYVAGYLGLIALGHGVATEFAGDITSWPYGRFIPVLALDDAPWQTLIVPGVALVTGATLFALAVRDRLVAVIDFAGLLVLALGVHLAIAPLAGADPVRTVFVFGPLWFPLHLGTAAAALWVASRFGRQGLYWGGSIIAVLAGLALVRLVVVPVTDFWPRMEIAGIAIFNLATVTLVLASGLLVVIGRLIKPTGGEAGRWAGIGFQALGGVTAFVWMLVTIRHGFHPDLLQGETLRVERYGYTGGMLAFAFGLLWLGTARDAQAIRIASLAVALATVGKLFVFDMGGLEGLWRIGSFLGLGLALLGVSWFYARFVFGVGGRHGQEGGAAGEASASPA
>NC_016078.1|WP_139305114.1|2936887_2937454_-|gamma-glutamylcyclotransferase
MTSEPSSHWVFGYGSLIWRPGFVFERAERALLRGVHRRLCIYSHLHRGTVERPGLVFGLERGGACVGMAFKIAEGDWDEVRDYLRAREQVTMVYLETHRPAKLASGAVVETLTFVADPKHPQYAGRLSLEEQLALVDGAVGEAGSNIDYVVNTARHLKEMGIADRQVQALAAMIAGRHARAEDQAALG
>NC_016078.1|WP_158308082.1|2935918_2936710_-|thermonuclease-family-protein
MTTLLMAVPGVTPALSQSCDALEAGPSGRVVSISDGDTFDLEGGLTVRLVGIQAPKLPLGREGFEAWPLGDEAKAAIEELVMGHQVSLYYGGENRDRHGRALAHVMVERDGETVWIQAEMLRRGLARVYSFPDNRSCLDVLYAAEAQGRADRLGIWRDPYYAIRDGADHQVLLDRVGNYELVEGRVLNAERVGSRVYLNFGRVWREDFTAVIESAGLRVFEQAGIDPLMFDNGVIRVRGWIESADGPRIDITHPEQIEVLARP
>NC_016078.1|WP_014132089.1|2934449_2935922_-|M48-family-metalloprotease
MSERTFTRRAFLSGTGLVLVSAVAGCSGLLGGSDITTRQTGGSAPAVPAGTDPEDAVIGLREHPRIIASYGGVYEHRATELMLARMVSKLLAAAGQPATQFTITILDSSEVNAFALPGGFIYVTRGILALANDMSELAAVIAHEIAHVTLRHARARSARVRTTEIVDRVITGVLGGVIDPNATAERSAQNLAAFSQNQELEADREGIKIAARAGYDPHAAARFLTAMGRFAQFVSAANGGEDFLSTHPSTPDRIQRAINEARNYGAPGTGITDRQGYLSAVDGITFGDSGKQGTISGQRYISPQYGLTFTVPSDYTLQMSNQAVVAVAGDGAALRFDSAQVSDSTALADYLRSGWIAGLQPETVTTRTINGIETATGRAQTDEWFFDVTVARIDNGVFRFIFAGRADTSAFRSAALRTVESLRRTQQSDLTAIRTIKLGLVRAGGGDNADTLAQRMGQLNRGRELFLVLNNLLPGDPVETGASYKVVRVN
>NC_016078.1|WP_014132099.1|2946312_2946465_-|hypothetical-protein
MDEAAENPLWSRLDFVRDGHIVPFDMEMVFGSPSGQLAFLEVVAETLSPK
>NC_016078.1|WP_014132100.1|2946640_2947294_+|NAD(P)H-dependent-oxidoreductase
MPTLFRLDASIRNTGSVTRALADTLEDALVSNAPGIAPIKREIGLDPLPSTAWADAVFAPHIPQDQRSAAQLSSLQLARTLADELIAADVYLFAVPFYNFGVSQHFKTWVDLVLTDPRLSSGVESPIKGRPATLIVARGGGYGPGTPRHGWDHGTAWYRRVLEDIWMLDLRIVECELTLADVTPAMAELRGLAAENLENAHALAGDSGRRLAGRLAA
>NC_016078.1|WP_050811726.1|2947335_2947860_+|MarR-family-transcriptional-regulator
MDTSDQAPATPALPVNLGWALATLLRTYQQQVEAALTGLPGGARGFLVMTLVERETCQSQAAIAERIGLDKTILTYLLDGLEKEGLVTRTPDPQDRRIRHINLTAKGQKTLAGLTRTVEGVEKQVLARLAPEEAAWFQRSIARAAGLDSDNSRPSGQHDSVEICQAALGAGEAC
>NC_016078.1|WP_014132102.1|2947879_2948614_-|methyltransferase-domain-containing-protein
MTPDVDGLIRFYKSPLGRLTRQAIRQQVSELAGDVTGLRLLGLGFATPYLRGALKGAERVLAFMPARQGASSWPREGPSHTVLCDPLEMPLTDAAMDMVIVIHGFEHVVDPEDMMRELWRICAPNGRVIIVVPRRRGLWAGLDTNPFGYGQPYSRGQMDKLLRDHSFTPEVWRDGLFFPPIHSGPILRSARMIEKASKMFGPTFAGAMCVRAKKEQFPAIARRKRAEKALGAPELAPQTAREGF
>NC_016078.1|WP_014132104.1|2948745_2949513_+|hydroxyacylglutathione-hydrolase
MSLEIAVFPALSDNFGYLVRDTASGRVAAIDAPEEAPILAELNKRGWPLTDIFITHHHPDHTDAIAPLKRHFDCNVIGPRKEAGKIAGLDALVGGGDTVTLGETVFEVIDVPGHTLGHIAFFAPGEKILFSADALFSLGVGRMFEGDAQSMWAGLERLKKLPPETMVYCGHEYTLANARFALSIDPDNKALQARAKQAQDQIDAGKPTIPFNLGEDFAANPFLRADTPEMAHAMDHEDAPAWQIFGAIRKAKDNF
>NC_016078.1|WP_148264182.1|2949766_2950536_-|IS5-family-transposase
MSRPKRYELSPEQWDRIKDLLPGKPGDPGRSGADNLTFVNGVLWVLRSGAHWHDLPERYGKWKTVHKRFTRWAKAGVWERVFTHLIRDPDNEYVSLDSSLVRAHQQAATGKGGGQKGGKQALGRSRGGLTTKIHMAVDALGRPLKLILTPGQRGDAPLAPALLEGLSPRRVLADKAYDSNALRRLIASMDAEAVIPCNPTRKQPIPYDFEAYKVRNTIERCFNKLKHFRRIATRFDRRAIHFLSFLHLAAAMLWMR
>NC_016078.1|WP_014132107.1|2950617_2950773_-|hypothetical-protein
MSAPALAKLTRAIEELERTVAVNRYTDAQKIALKSELETHIQRIDELRQGL
>NC_016078.1|WP_014132109.1|2951110_2951431_-|hypothetical-protein
MSDPLKSDGGKDARAMQRIGLILVALCVLWLAAAALMVVNFGGLVEALDAGLGWREAAVLAFFASTSLVIVFTLVAGDGLLGELQFLIPGFFMLFGFFWLGLVLLF
>NC_016078.1|WP_014132110.1|2951427_2951826_-|PH-domain-containing-protein
MDETNLLLDEHPKMFRANPLVFLLGVITIPIVVGIVILIAMWLRSIGERIAISEHAMLIEKGILNKNSTEVSLTSVRTVRVDQSFADRIFNVGRVDIYTAGDSPEATISGIAEPNRVRDLVRRHQSSLQQVQ
>NC_016078.1|WP_014132112.1|2952137_2953421_-|DUF560-domain-containing-protein
MRILILALALGLTLTGAVAARGPDGALLARLMALGDHDGARAHLAAAVSEPALHALYRTHLEGLIARQQGRSADAVALFRAVLAIDPGFVAARVELAKSLLATRNFEGAQHHLDSLALNADDAIRTIAQAGLDHIRANRGYGAQMHFSIAPSSNLNRGSAHRIFAAGGMDFAIDPDSRRTAGTGITIGGSAYHSFSLGNGQAVIANAAVDLTTDIEGTRAEQLSLSAGLNWQGRLGNSRFGLGPIADVSYSGFDPHLVRYGLSGTLNVPVGGQNLVGLSFTVLGQDYASQAYRNGFRVLAGAQVTHAFTPAVRASLQLGADIERTQAAHLDRDGVFGDVRVVSDWRGGFSTALFVRYARDQYLGNYPGTGTPRLDERLSAGITVSNSQIDLGGFTPALSYSYTRQFSNVSFFDHDSHDVSLGLTKAF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

679557 : 730763

Rhodobacter_phage(34.38%)

tail,portal,protease,transposase,head,terminase,integrase,capsid

attL 693602:693617|attR 734187:734202

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014129891.1\|679557_682923_-\|tail	tail fiber protein	A0A1B0T6I4	Pelagibaca_phage	9.4e-218	40.4
WP_041529051.1\|682915_683350_-	C40 family peptidase	M4SRS7	Rhodobacter_phage	2.2e-26	45.0
WP_014129893.1\|683349_683883_-	hypothetical protein	A0A1B0T6D7	Thiobacimonas_phage	7.0e-43	52.3
WP_014129894.1\|683995_684418_-	hypothetical protein	NA	NA	NA	NA
WP_014129895.1\|684414_686277_-	hypothetical protein	A0A0U2BXT9	Paracoccus_phage	5.5e-34	37.1
WP_139304997.1\|686269_686488_-	hypothetical protein	NA	NA	NA	NA
WP_014129897.1\|686502_686952_-	hypothetical protein	NA	NA	NA	NA
WP_014129898.1\|686908_687196_-	hypothetical protein	NA	NA	NA	NA
WP_014129899.1\|687198_687807_-	hypothetical protein	NA	NA	NA	NA
WP_014129900.1\|687806_688220_-	hypothetical protein	NA	NA	NA	NA
WP_014129901.1\|688322_688649_+	hypothetical protein	NA	NA	NA	NA
WP_014129902.1\|688649_689072_-	hypothetical protein	NA	NA	NA	NA
WP_014129903.1\|689216_689561_-	hypothetical protein	NA	NA	NA	NA
WP_014129904.1\|689557_689701_-	hypothetical protein	NA	NA	NA	NA
WP_014129905.1\|689710_690016_-	hypothetical protein	NA	NA	NA	NA
WP_014129906.1\|690024_690588_-	hypothetical protein	NA	NA	NA	NA
WP_014129907.1\|690654_691116_-	hypothetical protein	NA	NA	NA	NA
WP_139304958.1\|691124_691415_-	hypothetical protein	NA	NA	NA	NA
WP_014129909.1\|691490_692804_-\|capsid	phage major capsid protein	A0A142K7E1	Mycobacterium_phage	4.0e-31	29.4
WP_014129910.1\|693171_693912_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
693602:693617	attL	NA	NA	NA	NA
WP_139304998.1\|693915_695949_-\|portal	phage portal protein	A0A1B1IWP5	uncultured_Mediterranean_phage	1.7e-97	36.1
WP_014129912.1\|696106_697429_-\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	7.1e-145	62.5
WP_014129913.1\|697431_698001_-	DUF3486 family protein	NA	NA	NA	NA
WP_050811773.1\|698002_698299_-	hypothetical protein	M4SPS4	Rhodobacter_phage	3.9e-11	43.3
WP_014129915.1\|698307_698709_-	DUF2730 family protein	A0A219VHD8	Ochrobactrum_phage	7.4e-13	34.4
WP_014129916.1\|698705_698918_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_014129917.1\|698917_699448_-	hypothetical protein	M4SRV1	Rhodobacter_phage	1.5e-21	37.3
WP_014129918.1\|699444_699672_-	hypothetical protein	NA	NA	NA	NA
WP_014129919.1\|699668_700595_-	peptidoglycan-binding protein	G8GWD3	Rhodobacter_phage	2.1e-39	40.7
WP_014129920.1\|700736_701093_-	helix-turn-helix domain-containing protein	A0A1B0T6G2	Thiobacimonas_phage	4.3e-12	38.7
WP_014129921.1\|701085_701343_-	hypothetical protein	A0A219VHD0	Ochrobactrum_phage	3.5e-08	48.5
WP_041528554.1\|701339_701561_-	hypothetical protein	NA	NA	NA	NA
WP_014129923.1\|701557_702211_-	regulatory protein GemA	M4STB3	Rhodobacter_phage	1.3e-46	50.5
WP_014129924.1\|702207_702396_-	hypothetical protein	NA	NA	NA	NA
WP_014129925.1\|702392_702680_-	hypothetical protein	NA	NA	NA	NA
WP_014129926.1\|702689_703346_-	DUF3164 family protein	M4STB6	Rhodobacter_phage	4.5e-68	58.7
WP_014129927.1\|703332_703557_-	hypothetical protein	NA	NA	NA	NA
WP_014129928.1\|703692_703914_-	hypothetical protein	NA	NA	NA	NA
WP_014129929.1\|703910_704180_-	hypothetical protein	NA	NA	NA	NA
WP_041529055.1\|704172_704535_-	hypothetical protein	NA	NA	NA	NA
WP_014129931.1\|704567_705185_-	hypothetical protein	NA	NA	NA	NA
WP_139304959.1\|705184_705931_-	AAA family ATPase	A0A1B0T6M6	Pelagibaca_phage	6.6e-47	44.2
WP_014129933.1\|706005_708246_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	M4T586	Rhodobacter_phage	9.3e-105	34.0
WP_014129934.1\|708266_708728_-	hypothetical protein	NA	NA	NA	NA
WP_014129935.1\|708733_709570_-	ParB N-terminal domain-containing protein	A0A219VHB6	Ochrobactrum_phage	2.0e-15	32.6
WP_014129937.1\|709840_710098_+	hypothetical protein	NA	NA	NA	NA
WP_139304960.1\|710069_710288_-	hypothetical protein	NA	NA	NA	NA
WP_041529058.1\|710284_710566_-	helix-turn-helix domain-containing protein	G8GWB2	Rhodobacter_phage	3.8e-16	51.7
WP_050811640.1\|710715_711387_+	helix-turn-helix transcriptional regulator	R9U2Q5	Rhizobium_phage	3.7e-25	32.8
WP_014129941.1\|711467_711833_+	hypothetical protein	NA	NA	NA	NA
WP_014129942.1\|712033_712483_+	hypothetical protein	NA	NA	NA	NA
WP_139304999.1\|712520_713771_+	ATP-binding protein	A0A0U4IJ26	Arthrobacter_phage	3.2e-78	41.2
WP_041528559.1\|714019_714208_+	hypothetical protein	NA	NA	NA	NA
WP_041528560.1\|714264_714867_+	hypothetical protein	NA	NA	NA	NA
WP_014129944.1\|715004_716168_+\|portal	phage portal protein	A0A0K1LLE7	Bacillus_phage	1.2e-63	40.8
WP_014129945.1\|716448_716637_+	hypothetical protein	NA	NA	NA	NA
WP_014129947.1\|716770_717259_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	3.8e-27	45.3
WP_014129948.1\|717473_718700_+\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	4.6e-82	42.5
WP_014129949.1\|719010_719589_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_139304961.1\|719597_719927_+\|head	phage head closure protein	A0A1W6JP44	Morganella_phage	2.2e-07	35.8
WP_014129951.1\|719927_720338_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_014129952.1\|720339_720753_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_014129953.1\|720739_720997_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_014129954.1\|721075_721390_+	gene transfer agent family protein	NA	NA	NA	NA
WP_014129955.1\|721386_721584_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_014129956.1\|721580_722129_+\|tail	phage tail tape measure protein	K7YBG2	uncultured_Mediterranean_phage	2.2e-07	29.7
WP_014129957.1\|722492_723125_+	DUF2460 domain-containing protein	A0A0K1LLZ8	Rhodobacter_phage	7.5e-52	54.2
WP_014129958.1\|723121_724000_+	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	8.5e-54	37.7
WP_014129959.1\|723996_724416_+	C40 family peptidase	F4YXU4	Roseobacter_phage	5.0e-28	43.8
WP_014129960.1\|724917_728676_+	glycoside hydrolase TIM-barrel-like domain-containing protein	A0A0K1LLC1	Rhodobacter_phage	1.9e-211	38.5
WP_014129961.1\|728672_729617_+	DUF2793 domain-containing protein	A0A0K1LM54	Rhodobacter_phage	6.4e-39	40.2
WP_014129962.1\|730013_730763_+	glycoside hydrolase family 108 protein	A0A088F6V6	Sulfitobacter_phage	1.7e-42	51.2
734187:734202	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1403092 : 1411761

Synechococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014130591.1\|1403092_1404151_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	8.2e-19	58.3
WP_014130592.1\|1404199_1405366_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	6.2e-52	35.0
WP_041529194.1\|1405443_1406112_+	dTMP kinase	K7R9G5	Vibrio_phage	3.3e-13	42.0
WP_014130594.1\|1406108_1407140_+	AAA family ATPase	A0A1U9WR94	Streptococcus_virus	2.3e-05	33.3
WP_014130595.1\|1407147_1408701_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	4.2e-104	39.6
WP_014130596.1\|1408700_1409483_+	TatD family hydrolase	NA	NA	NA	NA
WP_014130597.1\|1409479_1410304_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_014130598.1\|1410339_1411761_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	5.1e-40	33.1

DBSCAN-SWA_3

1450283 : 1462047

uncultured_Mediterranean_phage(88.89%)