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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_023151 Thermotoga maritima MSB8, complete sequence 8 crisprs DEDDh,cas3,TnpB_regular.1,cas14k,cas3HD,cas6,csx1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx22,cas8b1,cas7,cas5,cas4,cas1,cas2,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,WYL,csa3,cas14j 0 7 5 0

Results visualization

1. NC_023151
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023151_1 534694-536322 Orphan III-A
24 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023151_2 548486-549051 Orphan III-A
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023151_3 575888-576449 Orphan III-A
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023151_4 942517-945276 Orphan III-A
41 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023151_5 1034550-1035441 TypeIII III-A
13 spacers
csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,cmr1gr7,cmr3gr5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023151_6 1183234-1183461 Orphan III-A
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023151_7 1294777-1295339 Orphan III-A
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_023151_8 1387006-1387167 Orphan III-A
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_023151_5 5.11|1035245|37|NC_023151|CRISPRCasFinder,CRT 1035245-1035281 37 NZ_CP016452 Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence 996115-996151 9 0.757
NC_023151_4 4.22|943946|37|NC_023151|CRISPRCasFinder 943946-943982 37 MF417888 Uncultured Caudovirales phage clone 9S_3, partial genome 37048-37084 10 0.73
NC_023151_4 4.104|943947|37|NC_023151|PILER-CR 943947-943983 37 MF417888 Uncultured Caudovirales phage clone 9S_3, partial genome 37048-37084 10 0.73
NC_023151_5 5.11|1035245|37|NC_023151|CRISPRCasFinder,CRT 1035245-1035281 37 NZ_CP010858 Marinovum algicola DG 898 plasmid pMaD3 115273-115309 10 0.73
NC_023151_6 6.5|1183331|34|NC_023151|CRT 1183331-1183364 34 NZ_CP034185 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence 294235-294268 10 0.706
NC_023151_2 2.6|548854|37|NC_023151|CRISPRCasFinder,PILER-CR 548854-548890 37 MH271312 Microbacterium phage RobsFeet, complete genome 48027-48063 11 0.703
NC_023151_4 4.28|944344|35|NC_023151|CRISPRCasFinder 944344-944378 35 KY554775 Lactococcus phage AM11, complete genome 48564-48598 11 0.686
NC_023151_4 4.28|944344|35|NC_023151|CRISPRCasFinder 944344-944378 35 KY554773 Lactococcus phage AM8, complete genome 48561-48595 11 0.686
NC_023151_4 4.28|944344|35|NC_023151|CRISPRCasFinder 944344-944378 35 KY554768 Lactococcus phage AM1, complete genome 48791-48825 11 0.686
NC_023151_4 4.28|944344|35|NC_023151|CRISPRCasFinder 944344-944378 35 KY554769 Lactococcus phage AM2, complete genome 48788-48822 11 0.686
NC_023151_4 4.28|944344|35|NC_023151|CRISPRCasFinder 944344-944378 35 KY554770 Lactococcus phage AM3, complete genome 49165-49199 11 0.686
NC_023151_4 4.28|944344|35|NC_023151|CRISPRCasFinder 944344-944378 35 KY554776 Lactococcus phage AM12, complete genome 48545-48579 11 0.686
NC_023151_4 4.28|944344|35|NC_023151|CRISPRCasFinder 944344-944378 35 KF926093 Lactococcus phage phiL47, complete genome 52499-52533 11 0.686
NC_023151_4 4.28|944344|35|NC_023151|CRISPRCasFinder 944344-944378 35 KY554774 Lactococcus phage AM9, complete genome 48562-48596 11 0.686
NC_023151_4 4.110|944345|35|NC_023151|PILER-CR 944345-944379 35 KY554775 Lactococcus phage AM11, complete genome 48564-48598 11 0.686
NC_023151_4 4.110|944345|35|NC_023151|PILER-CR 944345-944379 35 KY554773 Lactococcus phage AM8, complete genome 48561-48595 11 0.686
NC_023151_4 4.110|944345|35|NC_023151|PILER-CR 944345-944379 35 KY554768 Lactococcus phage AM1, complete genome 48791-48825 11 0.686
NC_023151_4 4.110|944345|35|NC_023151|PILER-CR 944345-944379 35 KY554769 Lactococcus phage AM2, complete genome 48788-48822 11 0.686
NC_023151_4 4.110|944345|35|NC_023151|PILER-CR 944345-944379 35 KY554770 Lactococcus phage AM3, complete genome 49165-49199 11 0.686
NC_023151_4 4.110|944345|35|NC_023151|PILER-CR 944345-944379 35 KY554776 Lactococcus phage AM12, complete genome 48545-48579 11 0.686
NC_023151_4 4.110|944345|35|NC_023151|PILER-CR 944345-944379 35 KF926093 Lactococcus phage phiL47, complete genome 52499-52533 11 0.686
NC_023151_4 4.110|944345|35|NC_023151|PILER-CR 944345-944379 35 KY554774 Lactococcus phage AM9, complete genome 48562-48596 11 0.686

1. spacer 5.11|1035245|37|NC_023151|CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.757

gcgcccgccagcgccagcgccagcatgccaaaaacaa-	CRISPR spacer
ccgcgcgccagcgccagcgccaccatg-cagacgcggt	Protospacer
 *** ***************** **** **.* .*.. 

2. spacer 4.22|943946|37|NC_023151|CRISPRCasFinder matches to MF417888 (Uncultured Caudovirales phage clone 9S_3, partial genome) position: , mismatch: 10, identity: 0.73

aaaacaaaaacaaaaatatatatatagaagatagtag	CRISPR spacer
aggacaaaaacaaaattatatatgtagaatgttttct	Protospacer
*..************ *******.***** .*  *  

3. spacer 4.104|943947|37|NC_023151|PILER-CR matches to MF417888 (Uncultured Caudovirales phage clone 9S_3, partial genome) position: , mismatch: 10, identity: 0.73

aaaacaaaaacaaaaatatatatatagaagatagtag	CRISPR spacer
aggacaaaaacaaaattatatatgtagaatgttttct	Protospacer
*..************ *******.***** .*  *  

4. spacer 5.11|1035245|37|NC_023151|CRISPRCasFinder,CRT matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 10, identity: 0.73

gcgcccgccagcgccagcgccagcatgccaaaaacaa	CRISPR spacer
accaccgccagcgccagcgccggcatggcaagatgcg	Protospacer
.*  *****************.***** ***.*   .

5. spacer 6.5|1183331|34|NC_023151|CRT matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cgaatat-tcgacactaccagcgacaggaacgtct	CRISPR spacer
-gagcgcaccgacaccaccagcgacaagaacgtag	Protospacer
 **.... .******.**********.******  

6. spacer 2.6|548854|37|NC_023151|CRISPRCasFinder,PILER-CR matches to MH271312 (Microbacterium phage RobsFeet, complete genome) position: , mismatch: 11, identity: 0.703

cttccagctcagtacaggacgaatgccgtctggatca	CRISPR spacer
cagtagcccttgtacaggccgaacgccgtctggatca	Protospacer
*  . . *.. ******* ****.*************

7. spacer 4.28|944344|35|NC_023151|CRISPRCasFinder matches to KY554775 (Lactococcus phage AM11, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

8. spacer 4.28|944344|35|NC_023151|CRISPRCasFinder matches to KY554773 (Lactococcus phage AM8, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

9. spacer 4.28|944344|35|NC_023151|CRISPRCasFinder matches to KY554768 (Lactococcus phage AM1, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

10. spacer 4.28|944344|35|NC_023151|CRISPRCasFinder matches to KY554769 (Lactococcus phage AM2, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

11. spacer 4.28|944344|35|NC_023151|CRISPRCasFinder matches to KY554770 (Lactococcus phage AM3, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

12. spacer 4.28|944344|35|NC_023151|CRISPRCasFinder matches to KY554776 (Lactococcus phage AM12, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

13. spacer 4.28|944344|35|NC_023151|CRISPRCasFinder matches to KF926093 (Lactococcus phage phiL47, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

14. spacer 4.28|944344|35|NC_023151|CRISPRCasFinder matches to KY554774 (Lactococcus phage AM9, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

15. spacer 4.110|944345|35|NC_023151|PILER-CR matches to KY554775 (Lactococcus phage AM11, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

16. spacer 4.110|944345|35|NC_023151|PILER-CR matches to KY554773 (Lactococcus phage AM8, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

17. spacer 4.110|944345|35|NC_023151|PILER-CR matches to KY554768 (Lactococcus phage AM1, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

18. spacer 4.110|944345|35|NC_023151|PILER-CR matches to KY554769 (Lactococcus phage AM2, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

19. spacer 4.110|944345|35|NC_023151|PILER-CR matches to KY554770 (Lactococcus phage AM3, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

20. spacer 4.110|944345|35|NC_023151|PILER-CR matches to KY554776 (Lactococcus phage AM12, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

21. spacer 4.110|944345|35|NC_023151|PILER-CR matches to KF926093 (Lactococcus phage phiL47, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

22. spacer 4.110|944345|35|NC_023151|PILER-CR matches to KY554774 (Lactococcus phage AM9, complete genome) position: , mismatch: 11, identity: 0.686

gttgttctaagtcttcaaaaggatttacaagttta	CRISPR spacer
tagacaataagtcttcaaaaggatttaaaaattct	Protospacer
   ..  ******************** **.**. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 627603 : 634563 7 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 1009007 : 1016950 10 Staphylococcus_phage(37.5%) protease,transposase NA
DBSCAN-SWA_3 1164247 : 1171860 10 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_4 1526840 : 1544761 16 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_5 1695831 : 1704550 8 Powai_lake_megavirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage