CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_020541	Rhodanobacter denitrificans, complete sequence	5 crisprs	csa3,cas3,DEDDh,DinG,RT,PD-DExK,WYL	0	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_020541_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020541_1

324936-325035

Orphan

Consensus_repeat	Method
AACCGGCCATCCTTGGCCGGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020541_1

>merge|NC_020541|1|324936-325035|CRISPRCasFinder
AACCGGCCATCCTTGGCCGGACTATTCAAAAAGGCAGGACTTCACGCGACGTCCTGTCGCGGAGAGCGAAGGTCAAGAACCGGCCATCCGTGGCCGGACT

>NC_020541|1|1|324936-325035|CRISPRCasFinder
AACCGGCCATCCTTGGCCGGACT	ATTCAAAAAGGCAGGACTTCACGCGACGTCCTGTCGCGGAGAGCGAAGGTCAAG
AACCGGCCATCCGTGGCCGGACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020541.1\|WP_015446563.1\|326172_326742_+\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_015446565.1\|327918_328821_+\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293
NC_020541.1\|WP_007514049.1\|333876_334497_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NC_020541.1\|WP_015446556.1\|317231_320387_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237017
NC_020541.1\|WP_015446566.1\|329514_332169_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|237914
NC_020541.1\|WP_015446559.1\|323752_323896_+\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_041676648.1\|320635_321076_+\|DUF2244-domain-containing-protein	unknown	unknown	gnl\|CDD\|378350
NC_020541.1\|WP_015446560.1\|324008_324896_+\|cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|238834
NC_020541.1\|WP_015446554.1\|314038_315535_+\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|224978
NC_020541.1\|WP_041676649.1\|325415_326147_+\|SURF1-family-protein	unknown	unknown	gnl\|CDD\|119401
NC_020541.1\|WP_015446558.1\|321096_322008_+\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|259979
NC_020541.1\|WP_015446555.1\|315610_317026_-\|coniferyl-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143451
NC_020541.1\|WP_007514065.1\|322080_323697_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
NC_020541.1\|WP_007514095.1\|313494_313788_-\|YcgL-domain-containing-protein	unknown	unknown	gnl\|CDD\|377477
NC_020541.1\|WP_007514051.1\|332190_332847_+\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_007514050.1\|332870_333866_-\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|372642
NC_020541.1\|WP_015446564.1\|326741_327917_+\|COX15/CtaA-family-protein	unknown	unknown	gnl\|CDD\|367131
NC_020541.1\|WP_007514053.1\|329115_329358_+\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_007514059.1\|325140_325356_-\|twin-transmembrane-helix-small-protein	unknown	unknown	gnl\|CDD\|378564
NC_020541.1\|WP_015446553.1\|309982_313423_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980

Protein	Function_ID	Function_description	E-value
NC_020541.1\|WP_015446565.1\|327918_328821_+\|protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	9.93213e-138
NC_020541.1\|WP_007514049.1\|333876_334497_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	5.66036e-36
NC_020541.1\|WP_015446556.1\|317231_320387_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0
NC_020541.1\|WP_015446566.1\|329514_332169_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
NC_020541.1\|WP_041676648.1\|320635_321076_+\|DUF2244-domain-containing-protein	gnl\|CDD\|378350	pfam10003, DUF2244, Integral membrane protein (DUF2244). This domain, found in various bacterial hypothetical and putative membrane proteins, has no known function.	3.29117e-30
NC_020541.1\|WP_015446560.1\|324008_324896_+\|cytochrome-c-oxidase-subunit-3	gnl\|CDD\|238834	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.	2.02831e-85
NC_020541.1\|WP_015446554.1\|314038_315535_+\|outer-membrane-protein-transport-protein	gnl\|CDD\|224978	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism].	4.88048e-91
NC_020541.1\|WP_041676649.1\|325415_326147_+\|SURF1-family-protein	gnl\|CDD\|119401	cd06662, SURF1, SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.	1.0864e-44
NC_020541.1\|WP_015446558.1\|321096_322008_+\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|259979	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II. Cytochrome c Oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit II contains a copper-copper binuclear site called CuA, which is believed to be involved in electron transfer from cytochrome c to the binuclear center (active site) in subunit I.	8.30095e-61
NC_020541.1\|WP_015446555.1\|315610_317026_-\|coniferyl-aldehyde-dehydrogenase	gnl\|CDD\|143451	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.	0
NC_020541.1\|WP_007514065.1\|322080_323697_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
NC_020541.1\|WP_007514095.1\|313494_313788_-\|YcgL-domain-containing-protein	gnl\|CDD\|377477	pfam05166, YcgL, YcgL domain. This family of proteins formerly called DUF709 includes the E. coli gene ycgL. homologs of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure.	2.04568e-28
NC_020541.1\|WP_007514050.1\|332870_333866_-\|bile-acid:sodium-symporter	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	1.46799e-112
NC_020541.1\|WP_015446564.1\|326741_327917_+\|COX15/CtaA-family-protein	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	2.4961e-58
NC_020541.1\|WP_007514059.1\|325140_325356_-\|twin-transmembrane-helix-small-protein	gnl\|CDD\|378564	pfam11137, DUF2909, Protein of unknown function (DUF2909). This is a family of proteins conserved in Proteobacteria of unknown function.	7.41485e-18
NC_020541.1\|WP_015446553.1\|309982_313423_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	6.28185e-21

>NC_020541.1|WP_015446560.1|324008_324896_+|cytochrome-c-oxidase-subunit-3
MGQQHDAYFVPTKSYWPFVAAVVMFTTVFGAAHWLNADPGESGFGKSVLTIGVLGVLGMFFGWFRSVINESLAGSYNHQVDTSFRMGMMWFIFSEVMFFGAFFGALFYVRMFSVPWLGGHGHGVLTHEFLWSDYTAAWGANGGNGPEQAGGAFRTVPAWGLPLLNTLILLTSSVTVTIAHHALRAGHRGKILLFLGLTVLLGATFLYFQAHEYIEAYKELNLTLHSGVYGSTFFLLTGFHGLHVTLGTIMLAVIWLRVLKGHFNKEHHFGFEAVAWYWHFVDVVWLGLFMFVYIL
>NC_020541.1|WP_015446559.1|323752_323896_+|hypothetical-protein
MAQQTIHAATAQPDGKARRGVRRTVTILAVVALAVYLSTFLQILLMK
>NC_020541.1|WP_007514065.1|322080_323697_+|cytochrome-c-oxidase-subunit-I
MSYAATHDQHDDHHGAPKGFFQRWCMSTNHKDIGTLYLIFSLTMLFIGGSFAMLIRAELFKPGMQLMQPYFFNEMTAMHALVMIFGAIMPAFVGLGNWMIPLMVGAPDMALPRMNNLSFWILPFAFVLLLSTLFLPGGGPAGGWTMYPPLSLQSGSLAYAVFAIHLMGISSIMGAINIIATILNMRAPGMDLMKMPVFVWSWLITAFLLIAVMPALAGAVTMLLTDKYFGTNFFNPGGGGDPVLYQHIFWFFGHPEVYIMILPAFGIISEIVPTFARKPIFGYKAMVFAIACIAFLSFIVWAHHMFAVGLPLGAEVFFMYATMLISVPTGVKVFNWVATMWGGSMTFETPMLFAIAFIILFTIGGFSGLMMALVPADFQYHDTYFIVAHFHYVLVTGALFAIIGAAYYWMPKWTGNMYNEFWGKVHFWNSVIWVNVLFFPQHFLGLAGMPRRIPDYNVAFANFNMISSIGGFLFGATQLIFVGVLIHCVFFSKKKATDRVWEGAKGLEWTIPSPAPHHTFEVPPVINDDELAHGHVND
>NC_020541.1|WP_015446558.1|321096_322008_+|cytochrome-c-oxidase-subunit-II
MTSGGIRRSFTAAAALALASFGSVALAAPGPWQLNLQRGASTWSSVPYHLNNVALAVCTVIGVLVFGAMFIAMFRFRKSRGAVAEKWSHNTTVEVVWTTIPVLILITLAYLATSGLTTWADTTGSQMTVKVTGYQWKWRYDYVDYLGKSIDKVGFMSKLDTRSDQTRQLGSGMDPYAVKVGDENTYLLDVDKPLVVPVDTKIRFVITSGDVIHSWWVPATGWKIDAIPGIINAAWANFTTPGTYRGQCAELCGQDHGFMPIVVVVKSKADFAKWLAGQEAQSAAPAAAPQTAQVAAPVTGKQG
>NC_020541.1|WP_041676648.1|320635_321076_+|DUF2244-domain-containing-protein
MWLKPNRTLSRRGLCRLIVVLAALVLMTAGLVAWQGNVFAPLFALMESVAMAIALRVAWRAGDRSERITLDAESLEVQSLPGRRCTRFPSYWVRVLLEPGSGRQRLLLSSHGRELEIGAFLAEQERTALSKKLMVLLADFNGQPRK
>NC_020541.1|WP_015446556.1|317231_320387_-|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MTQAILHPELPADGTPARARITAAWLRDETEAVNDLLTQATLPPAEREQVIDVAAGLVTRVRARAKDQSAVESFMRQYDLSSEEGVLLMCVAEALLRIPDKATADKLIRDKLGEADWKKHLGQSESLFVNASTWGLMLTGRLVNLAEDTRHDFTGALKRLVGRAGEPAIRLAVRQAMRIMGHQFVMGRSIDEALDRCAKKEYAVYRYSYDMLGESALTAETAERYQEDYRRAIARIGARGPFANHTDAPSISVKLSALHPRYEVAKREDARRMLTAKLLELSQLAMQQGIALSVDAEEADRLELSLDILGDVFAHPSLEGWNGLGIVVQAYSKRTPFVIDWLVETARAAGRRWYVRLVKGAYWDAEIKRAQEQGLAGYPLYTRKPNTDVSYLACARKLFDAGVELIYPQFATHNAHSIAAVHHIARGRPFEFQRLHGMGTDLYAEVIGPQNLNVPCRVYAPVGTHEDLLPYLVRRLLENGANTSFVNRVVDETLPVRELVADPCETVRRFASIPHPRIPLPVNLYGELRKNSMGINFSNDNELKALAEAVATKAGPWTAEPLVPGAKGNGPTVPVTNPADRRQAVGSYVSADAALVDQALANAVATQPGWDRLPAASRAAILEHAAEQLEARRAEFIALCVREAGKSLPDAIAEVREAADFLRYYATMARRLFGQPEQLPGPTGESNQLFLNGRGVFVCISPWNFPLAIFLGQVSAALAAGNSVIAKPAEQTSLIGYAAVKLLHEAGVPLDVLQYLPGDGAVVGAALTRDPRVAGVAFTGSTETAWAINRTLAARNAPIAALVAETGGQNAMIADSSALPEQIVKDVIASAFQSAGQRCSAARVLFVQEDIADKVIGMLAGAMAELKVGDPGQLSTDVGPVIDEDAKQILVEHAARMDKEAKKIAEAKLDAEVAAHGTFFAPRAYEIPALATLTREVFGPVLHIVRWKGSELAQVVEQINATGYGLTLGVHSRIDDTVEYIRSHARVGNCYVNRNQIGAVVGVQPFGGESLSGTGPKAGGPHYLLRFAGERTLTINTTAAGGNASLLTIGE
>NC_020541.1|WP_015446555.1|315610_317026_-|coniferyl-aldehyde-dehydrogenase
MHDATHTDLAGMLQRLRDAQAREPMPDWPRRAQRLRQLEKMLLEQRAAFATAIDADFGQRPREETDLLEIFPSLSAVRHALAHGRRWMKPRRRLADWLFLPARTELRPQPRGVVGIIVPWNYPLYLAVGPLVDALAAGNRAMLKMSEFTPRFSALFAEQATKYFQPDQVVVVNGDANVAQAFAALPFDHLLFTGSTAVGHHVMRAAAANLTPVTLELGGKSPAIIGPGARFEHAVERIVFGKLVNAGQTCIAPDYVLLPRARVAEFIALAGKAVARMYPQLERSTQYASIVSDRQYQRLTALRDGALAAGASAYALGEAAEDPARRLLPPQLLTEVDDGMAVMREEIFGPLLPLLPYDTLDEAIARIAARPHPLALYLFETDRALIERVLAQTHAGGVTLNDTLYHIAQHGLPFGGVGASGMGGYHGEAGFRTFSHLKPVFRQARWNGTGLLNPPYGARFRHMLDLLLRRG
>NC_020541.1|WP_015446554.1|314038_315535_+|outer-membrane-protein-transport-protein
MHTSFRSLTGTARPLALAALSIAVVGALVAPASADASAFQLKENSAKGLGRAYAGSATAGGDASVVVNNPAAMSELKGTYLQADVTAINFSAKFDGSAHDVLGRPISGGNGGDAGTTLPVPALFFATQVSDRVHVGAGFSVPFGFQTEYDRDWVGRYHGIKSKFQSLDATLSASFDVTDNFSLGASFIAQKTSAELTSAINFNAVGLGIQRGIGAQTAAGVAQIQAAAAAGQISPAQAATMIQAAVQQGQAAAAGVAAVTPPGVDGYARIKGDDWGYGWQLGGYWKLTANDKLALNYRSKISHRLEGTGNFTTTPGYDLLLANPALASSIPPFSHTTGTADFTTPAVVSASYWHQAEKFGFGADVAWTKWDVFKNLTVNYGNAQPSTSEKYNWRNTIYASIGGDYYLNDKLTLRGGIAVDSSPTYLATRSPRVPDSTRKMATVGIGYKASEHFEINASYAHIFVNNAHVNITSGTGDTLTGNFDDYGNLLSLSAMYKF
>NC_020541.1|WP_007514095.1|313494_313788_-|YcgL-domain-containing-protein
MQCFVYASLRKIDSYLWLAQRDAFETLPEPLVLLLGELRFVMEVQLDEQRKLPVEDAAQVLEHLRAQGWHLQLPPQETLAAANHPAYTHSPRDDRDE
>NC_020541.1|WP_015446553.1|309982_313423_-|ankyrin-repeat-domain-containing-protein
MTQPKSRRRPPLLHALAWFIPGWFAVAVAGLVTHPLTLVPLLLANALTMAAICHAIGFDPEPRFGRTVLRRGAAHLVMFTGYTVLVFVLVAWPMLQLTHQPSLSAALVLAAALVLALVALWRLWPAFGLVFVWDDAYPSQRDGSWIFTATLRSIAFGRHLSREERFFSHFLPAAFALLVLAFGAIALTGLYGVLPPEPRVAALAIYGVLLLPLGCLVIANRTLRALLCERQQPRRRGDHDPHAATAPRPVLSEQERTAGTPEQAAALLAATRDGDIERALALVEAGADPDTAPPGDDRDQRPVLMLAALLPDTRLLRALIAKGADVNRASGGITALLAATRDSWHGRAEAVLTLLANGASPLVTDAEGNTPLHGAVLSADAGVAAMLLDAAAPINALNKAGVSPLATACRAANWPLVKFLLERGAKPAPADGEPALVAAAGIADDDAEGVKLLLKHRAAVNAVDARHRHALLAAAAEGHEQIARALCAAGADVNLVDRHGSSALMEAARAGAGGIVQRLAEAQADAGLRDGHGRDALTLACQSPRAHADTVRALLALGAEPKAAGGDGRSALDHAAGAGRWDLVALLDPDTPLPASLSQDVLGEGSDTPAHLLDALRFGHWAIVSGFVERVRDWPQTELARLYLELAEPGLGAARRWLLDHGLDAEARLEAPRIDDAETADAPSLPPLGQRLFDALLPQLPDATEALDDLLQAGASPAGAGLLAQALAHLNGAAEGAALPLSLLERGADPFGADAHGRTPLQLAVVNGQLPLLQALLARGGDPNTRDRDGRTPLFAALEHGAQALPLVRALIAHGANPEATDANGETPLGLALEHPAVERWLDWRDWPRPNRALRADDLPAVARAGALASVQRLLELGFAVDTRDDQGATALLHACGAGHRDIAACLLDAGADAALPARSGVTPLAAAVAARREALVALLLQHEVAVDQRLPNQATALMVAAAMGYPDIAEQLLDAGADVNAVDDAGRSALHAAAQFGFEHNDSLRARRLFDGLLKRGADINHADNEGKTPLLLLLGAQLRPGSECDATHIGALVPLLLEAGARAEHADQRGVTALHACAMHALLPPARVLLSRGADRNAADAFGRTAADVARQLGYVDIAHELAARSSAIPSVRQTLRQPAQPSD
>NC_020541.1|WP_007514059.1|325140_325356_-|twin-transmembrane-helix-small-protein
METIYKIALVVVLLVVIFSLGQALYFMMTDKDDDKRTVWALTRRIGLSLLFIAMVAFGIWMGWLHPHDVGQ
>NC_020541.1|WP_041676649.1|325415_326147_+|SURF1-family-protein
MSGFRRPSWWALLLTLAGALLFVRLGVWQLHRADFKEDLLRRYAAAAAAPLQDFAGVADTPPADGFPRVKVDGHYLADRVYLLDNPKHDRRGGVQVYAPLALDGHSPLLLVDLGFLPGNGSDKSPQVPPLPTGKVSLQGLYVPPPPVGFEMGGNALARQTQWPKSSIFLDPAQVAADLGRGLYPRVLALDPDPAAIYERERNLDFSSMPPARHRAYAFQWFTFALAAVVILLVVHRKRKPRQS
>NC_020541.1|WP_015446563.1|326172_326742_+|hypothetical-protein
MKAADPAAVRKSRLFLLLIVLAFVAPMIAAGLLSWSGWQPGTKGNGEPILPQRNFVAEQLRVQLANGQPYAWRDSQPRLTLVALAGPGCAARCLATLTNMAAARVTLNRNQSRLRLLYLGAPPVDDARDGMRNYWQLGTDVDGKLAGFRPDAPDSVSALLVESNGTALSLYRVGFDPNGLRKDLQKVIK
>NC_020541.1|WP_015446564.1|326741_327917_+|COX15/CtaA-family-protein
MSSHAPRVLRWLALFAAVFAFGLVMFGAFVRLSNAGLSCPDWPTCYGQVTWPQHAQAVAHADAAFPDRPYEAHKAWREQVHRFLAGTLGVLVLLLALIAGWRRRGTLLAVVGGAVFAALGVGLYMRGEHLWSSLLAACAIVLPLLAALRLPRPGAWKICVLALAVIIFQAMLGMWTVTLLLKPVVVMGHLLGGMSTFALLAYAALRFAGVAAPDDGLADLRRLVAIGIMLLLCQIALGGWTSANYAALACGYGPGSFPECLGQWAPPTDFREGFVLWRGIGVNYEGGVLDMAARSAIQIAHRIGALVVFCYLGWLAVRTARHGLRALGLAIALALAGQVLLGISNVYFGLPLAVATAHNGVAALLLTTLLATLARTQRRHDESMFLSLGRH
>NC_020541.1|WP_015446565.1|327918_328821_+|protoheme-IX-farnesyltransferase
MSVLHEYLLLTKPRIVALLVFCAVIGMFLAVPGMPPWRALVFGTLGIWLASSSAAAFNQLIDQRIDKVMVRTAHRPLATGHLNARQVFVFALALGIASMLVLVLWVNTLTAVLTFAGLIGYAVIYTAFLKRASPQNIVIGGLAGAIPPVLGWTAVTGALHPYALQLCLIIFVWTPPHFWALAIFRRDDYSRAQVPMLPVTHGVVFTRWHILFYTVLLVLVTLLPVLTGMSGLVYLGGAAVLGGAFLYYAVRLLNPPDELYAMKVFSYSIVYLMALFAFLLVDHWLLPPLVPSGPPPVPFG
>NC_020541.1|WP_007514053.1|329115_329358_+|hypothetical-protein
MKLLRDSVLLRMLRRLLAGRREAVRATYTITVPAPLERSAGSNVVELHRRADAGGRTSAATKARGDALPSSGHLALVSSR
>NC_020541.1|WP_015446566.1|329514_332169_+|magnesium-translocating-P-type-ATPase
MIKQSIQGALPRAADRGASAPLHVAVAQEAFRANSELLASLETTPAGLDEEQIEARLHRDGINEVSYEKPPHWSRQLLRAFKNPFIIVLLVLAVVQMFATPDDLSGPIIIAAMVGISVLLSFTQEYRSSKAAEKLKAMVRNTATVTRRASDGHSERIEVPVGELVAGDIVHLAAGDMVPADLRLLHAKDLFISQAILTGESLPVEKAAPGAHGAAEADHANPLDLPTICYMGTNVVSGTATAVAVATGPRSYLGSLAHSIVGQRVQTSFDRGVNSVSWLLIRFMAVMVPVVFLINGFDKHDWLQAFMFALSVAVGLTPEMLPLIVTANLAKGALAMSRRKVVVKRLNAIQNFGAMDVLCTDKTGTLTLDKIVLERHLDLHGEESDEALEYGYLNSRFQTGLKNLMDKAVLAHRDLEPAAAHYRIVDEIPFDFQRRRMSVVLGNGDGHDLIVCKGAVEEMLSICTWAKTGDQIVPMTDAQRDEIKEMTRGLNEDGLRVLVVAVKQQPPAGRPYGVADESGLTAVGCLAFLDPPKDSAATAIAALHHHGVQVKVITGDNEAVTRKICREVGLDVEHSAQGRQIEPLDDAALDELVKRTTVFAKMSPLQKARVVKSLQRQGHTVGFLGDGINDAPALREADVGISVDTATDIAKESADIILLEKNLMVLEEGVIEGRITFGNIIKYIKMTASSNFGNMFSVLVASAFLPFLPMLPLQILVLNLLYDISQLSIPFDRMDDEYLRKPRKWDASDIGRFMVWIGPVSSIFDITTFLLLWHVFGANSMAHQPFFQSGWFIESLLTQTLIVHMIRTRRIPFLQSIASAPVLALTTAVILIGLFVPFTGLGAKIGMVALPPAFFGWVALTVLTYGVLTQLMKLVYIRRYGRWL
>NC_020541.1|WP_007514051.1|332190_332847_+|hypothetical-protein
MRRLAVSFVVAAMLLSPCAARAGTSLLVDDAGTLPDGRCQLESWLRLRGGGEATAVPACGLGGVEYSLGGSANAGAPSGPWLSAGLKRTLRDMDEATPGVAVSLGGSWRRSDHRLAAGTANLVVSLPLDPSWTVHVNMSWNTARGGPPWPGGGVGMQYALGAHWSGLAELYAARGAGGTAQAGLRRSFARGLSFELLAGHDRDGHWLTFGFNYAPGDS
>NC_020541.1|WP_007514050.1|332870_333866_-|bile-acid:sodium-symporter
MSPRRVRPDKFTLALLATVALASLLPCRDGTAQVFDAITDAAIALLFFLHGAKLPRAAIMQGLTHWRLHLTVFAGTFVLFPLLGLALRPLGQVLLTPELYLGVLFVCTLPSTVQSSIAFTSIAGGNVSAAVVSASMSNLIGIVLTPLLVGLLLASHGGGASWRGVLDIMLQLLLPFALGHAARRWIGGWVDRHKPLLGYTDQGTILLVVYTAFSAAVVGGLWRDTPVSALLATLAMCALLLALVMPTLSWAARRLGFSREDEITIVFCGSKKSMASGIPMAKILFAGQLGGLGALVLPLMIFHQLQLMVCAVVAQRYATRAAVTDDTLEAD
>NC_020541.1|WP_007514049.1|333876_334497_-|DedA-family-protein
MDLLQQLVTIFAENGYVAVFIALMICGAGLPLPEDITLVAGGVIAGLGYANVHVMFALTMFGVLLGDCAIFLLGHHYGARILQWRFVARVLTPSRYVKVQEKFDHYGNRMLFFARFLPGMRTTVYLTAGTTHRVSFLRFLLIDTMAALISVPFWVYLGYFGANNHEWLVKWMHRGQSSLWVLIGLLLLTVLVLWWKHRRRTRCGLD

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Crispr_ID: NC_020541_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020541_2

978279-978355

Orphan

Consensus_repeat	Method
ACCAGCGTGGGTTCGGGCGACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020541_2

>merge|NC_020541|2|978279-978355|CRISPRCasFinder
ACCAGCGTGGGTTCGGGCGACCTGCACGTGCGCCAGGTATCCGGCAAGTTCGGCACCAGCGTGGGTTCGGGCGACGT

>NC_020541|2|2|978279-978355|CRISPRCasFinder
ACCAGCGTGGGTTCGGGCGACCT	GCACGTGCGCCAGGTATCCGGCAAGTTCGGC
ACCAGCGTGGGTTCGGGCGACGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020541.1\|WP_041676669.1\|989082_990078_+\|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl\|CDD\|366471
NC_020541.1\|WP_015447007.1\|973380_974169_+\|type-II-secretion-system-protein-N	unknown	unknown	gnl\|CDD\|376490
NC_020541.1\|WP_015447008.1\|975539_976361_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NC_020541.1\|WP_015447011.1\|978641_979760_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|238537
NC_020541.1\|WP_015447004.1\|970715_971450_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NC_020541.1\|WP_015447013.1\|982295_982997_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226647
NC_020541.1\|WP_015447016.1\|985536_986892_-\|3-oxoacid-CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NC_020541.1\|WP_007507003.1\|983705_984437_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_020541.1\|WP_015447017.1\|987417_988983_+\|peptidase-M56	unknown	unknown	gnl\|CDD\|310280
NC_020541.1\|WP_015447009.1\|977220_977715_-\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_015447003.1\|970176_970695_+\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NC_020541.1\|WP_007507018.1\|976357_977170_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_020541.1\|WP_027485858.1\|971948_973313_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|180800
NC_020541.1\|WP_015447015.1\|984474_985497_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_020541.1\|WP_007506997.1\|987059_987431_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NC_020541.1\|WP_027490773.1\|982995_983607_+\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NC_020541.1\|WP_007507024.1\|974185_974962_+\|inositol-phosphate-phosphatase	unknown	unknown	gnl\|CDD\|238819
NC_020541.1\|WP_007507022.1\|974985_975543_+\|ADP-compounds-hydrolase-NudE	unknown	unknown	gnl\|CDD\|183303
NC_020541.1\|WP_015447012.1\|979815_982299_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NC_020541.1\|WP_100224855.1\|971660_971936_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314332

Protein	Function_ID	Function_description	E-value
NC_020541.1\|WP_041676669.1\|989082_990078_+\|isoaspartyl-peptidase/L-asparaginase	gnl\|CDD\|366471	pfam01112, Asparaginase_2, Asparaginase.	4.19606e-146
NC_020541.1\|WP_015447007.1\|973380_974169_+\|type-II-secretion-system-protein-N	gnl\|CDD\|376490	pfam01203, T2SSN, Type II secretion system (T2SS), protein N. Members of the T2SN family are involved in the Type II protein secretion system. The precise function of these proteins is unknown.	7.64382e-25
NC_020541.1\|WP_015447008.1\|975539_976361_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	7.33736e-103
NC_020541.1\|WP_015447011.1\|978641_979760_-\|citrate-transporter	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	5.3593e-52
NC_020541.1\|WP_015447004.1\|970715_971450_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	1.62912e-85
NC_020541.1\|WP_015447013.1\|982295_982997_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226647	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	1.76234e-108
NC_020541.1\|WP_015447016.1\|985536_986892_-\|3-oxoacid-CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	1.02215e-116
NC_020541.1\|WP_007507003.1\|983705_984437_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.2318e-74
NC_020541.1\|WP_015447017.1\|987417_988983_+\|peptidase-M56	gnl\|CDD\|310280	pfam05569, Peptidase_M56, BlaR1 peptidase M56. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. homologs to this peptidase domain, which corresponds to Merops family M56, are also found in a number of other bacterial genome sequences.	1.6865e-49
NC_020541.1\|WP_015447003.1\|970176_970695_+\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	1.5743e-12
NC_020541.1\|WP_007507018.1\|976357_977170_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.27639e-143
NC_020541.1\|WP_027485858.1\|971948_973313_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|180800	PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional.	0
NC_020541.1\|WP_015447015.1\|984474_985497_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.81534e-20
NC_020541.1\|WP_007506997.1\|987059_987431_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	2.42836e-40
NC_020541.1\|WP_027490773.1\|982995_983607_+\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	7.11553e-79
NC_020541.1\|WP_007507024.1\|974185_974962_+\|inositol-phosphate-phosphatase	gnl\|CDD\|238819	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.	6.98166e-70
NC_020541.1\|WP_007507022.1\|974985_975543_+\|ADP-compounds-hydrolase-NudE	gnl\|CDD\|183303	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.	2.33237e-103
NC_020541.1\|WP_015447012.1\|979815_982299_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	2.92222e-158
NC_020541.1\|WP_100224855.1\|971660_971936_+\|hypothetical-protein	gnl\|CDD\|314332	pfam11362, DUF3161, Protein of unknown function (DUF3161). This eukaryotic family of proteins has no known function.	0.00449292

>NC_020541.1|WP_015447009.1|977220_977715_-|hypothetical-protein
MHRKTLLASALAVLIAGSSALVMAQQTPPPPSPAPSAMAGKDLRAHHSDRDHGMRMHRFDHQRNGVIGDLHGLERLYMQAGRSKEMASIYNDVLARSQDPRVRDYVYQRLARLQAQPANVDQAIATLRKGLDENLANEAKRRAEREKMRAAWQQRAGEAAPPAK
>NC_020541.1|WP_007507018.1|976357_977170_+|nucleoside-triphosphate-pyrophosphohydrolase
MSDSPRHSLDDLLAIMARLRDPERGCPWDVQQDFASIAAYTIEEAYEVADAIDRRDWPDLRDELGDLLLQVVFHAQMASERGLFDFADVAHAISAKMLRRHPHVFGDVRYADLAAQMQAWEAIKTAERADKGEPADASALAGISSGLPEWKRAQKLQQRAAATGFTWPDPAPVLAKLAEEVDEVRAEFANGADPARLQDEIGDVLFVMVNLARHAGVDFSQALRHANGKFERRFRRMEQLATADGAAFGKRTLGEQEQLWQRAKQGEGNH
>NC_020541.1|WP_015447008.1|975539_976361_+|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MSMPPGTMPPELARQVGAIARAAGAAILDVYHGDFAVQTKADASPLTAADLAAQQVIMAGLAALEPVLPVLSEEAKALPWSERRHWPRYWLVDPLDGTREFIKRNGEFTVNIALIDDHRSALGVVLAPVSGELYVAAQGQGAWLQTQAEAPWQRIRSRPLGQPALVAGSRSHGGVQGDVLQQLVGDDYQLIPLGSSLKFCLIARGAADLYLRLGLTSEWDTAAAQCVLEEAGGAVLDLAGQPFRYNRGESLLNPEFVAVGDTTIDWTARLLAP
>NC_020541.1|WP_007507022.1|974985_975543_+|ADP-compounds-hydrolase-NudE
MRKLPIIHATRDVSDSHFLHVEQLDLEFSNGARRTYERLKGSGLGAVIIVPMLDDDTVLLVREYGGGVGRYELGLPKGRLDQDETAEQGAEREMKEEIGYGAHKLKILHNLSLSPSYMTHMAHVVLAQDLYPEKLVGDEPEELEVVPWKMSELHTLLGRDDVTEGRSIAALFMAREYLAGRFLRT
>NC_020541.1|WP_007507024.1|974185_974962_+|inositol-phosphate-phosphatase
MNPDIAATALTAAREAAAAAAEVIEHYWRRGVEVELKSDATPVTIADREAEQAIRRVLQMALPQASIYGEEYGLDGERGGLLWLVDPLDGTKSFVRRTPFFSTQIALMDGDELVLGVSSAPVYGETMWASAGNGAWFEGERVRVADTARLAQASISTGNVKTLTGDSRWDALGALIRDSNRIRGYGDFCHYHLLARGSLDLVIESDVNILDIAALAVIVREAGGVFTDLDGAPPTLDTTSVLAGTPAIHAQALQRLRR
>NC_020541.1|WP_015447007.1|973380_974169_+|type-II-secretion-system-protein-N
MKPLRKCLIGLGVLALAAAVLLWFLPARWAMPWIEPQLHGLQLQQVQGTLWHGRADEVVAADGQALGRLQWRLSRRALLGQVRLQLQFEGPRLAFSGGVRRLPDGQVEVSDASVRAELAAWTHAAMPPWGQPRGELQVAIGHALLQGGWPMQLQAQAQWPQALMHTTQDGDVALGMLQAQASAQGGVIRAQLHDDGRGPLHADGKLQLSPLGWRLDATLRARQTDPALRRWLARLGPPAADGSVRLQRRGGLAGSAPAPSTN
>NC_020541.1|WP_027485858.1|971948_973313_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MNNSASGNAALAARDLRHVWHPCTQMHDHESVPMVPIVRGEGAWLIDADGRRYLDGISSWWTNLFGHANPRLAAALAEQARTLEHVIFAGFTHEPAIELAEELVRITPPGLDRVFYADNGSAAIEVALKMSFHYWLNQGHGEKTRFIALTGSYHGETLGALSVSDVALYRKTYAPLLLTPFLAPSPDAYEGEPGESPEQTAKRRLGELRTLLERHAHETCAVIVEPLVQCAGGMRMYHPGYLSGLRALCDEFAVHFIADEIAVGFGRTGTLFACEQAAVTPDFMCLSKGLTGGTLPLSAVLTRDVVYQAFYAEYNAGKAFLHSHSYTGNPLACRVALETLAIFRDEPVLERNRQLAVHLARRLQPLRAHPHVADVRQTGLIAAIELVADKASRRPYPAAERRGLRVYLHGLQHGALLRPLGNVVYFMPPYVVSEAEIDQLVDTAIAGIERAVAD
>NC_020541.1|WP_100224855.1|971660_971936_+|hypothetical-protein
MLAGSGASTMLLAQDSPNSPPSAASSGQQRAARADDHNCIRETGSHIPAKKGQCLPVNGRSYSQQDLQRTGEPELGRALQKLDPRITVHGH
>NC_020541.1|WP_015447004.1|970715_971450_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MRTIRIHVDQPLVVCAEPNLPPQAAEHVGRVLRMNPGDPLTLFNGDGHDYAAVILTVGKREVAVRVESKQALRNESPLPLTLAQGVARGEKMDLIVQKATELGVARIVPLLTERSEVRLDAARAEKRLAHWRAVVASACEQSGRARLPEVTPALPLAAWLGSLADDGTLRLALLPEADRSPRQLQFGPAGGLLVVGPEGGLGERDVDALSAAGFEGLRLGPRILRTETAGLAALAALQALHGDG
>NC_020541.1|WP_015447003.1|970176_970695_+|chemotaxis-protein-CheW
MSDPLPREIRCVLVPVGNLRLLLPNATIAEVITQSTPEPVAGAPAWLLGRIAWRGWRVPLVSFTELAGTEEGDAELSVRVAVLKALGGHPKLPFIAVLTQGFPRLTTLNAELIIPTHDGKPLPPGVRAHVLVRDDVAMIPDLEWIEATLLELLDAAEPAASAASSSSFDSED
>NC_020541.1|WP_015447011.1|978641_979760_-|citrate-transporter
MIASRTRQRLKEEWLLWLFAALAIALAVLDPQPLASYRRWLQLPTLAGMMGLLIAIQGIRDSGLVQHAAVAMVARAHSLRGLGLLLVSATALLSMVLTNDVSLFLIVPLTLAIGAVSNLPVLRMVVLEALAVNAGSTLSPIGNPQNLLLWQHSQLPFLHFAAAMLPAAAVMFVLVAAFTLLWLPRDRVALSPERIDGVVASNRLGTCSMAALLGMVLLMEYGQAPLGALLLLALFALLARSSLARIDWLLLLTFAAIFLGLGHFANLPLVHQALDRLDFGQPLTLYASGIVASQLISNVPATVLLLERTPDAIALAVAVNVGGFGVAIGSLANLIALRLAKQPHGLRLLHLVSIPFLLVCAPLVYLAWRWLG
>NC_020541.1|WP_015447012.1|979815_982299_-|FtsX-like-permease-family-protein
MKMLLLALRSLRREWHLPELRTLAASLVLAVVALGVVATLATRIERGMLASAAELIGGDIGVSAPQALPPVFAERARRNGLQLARTASFPSVAFAYEQTQLLDVQAVDAHYPLRGKLELRDAAGRTRNGHAPAAGEVYLDHRALVALGLQVGQPLQLGGRELTIAAELLRQPDGGELLALAPRALMSLADAEQAGLLGTGSRARHRLLLAGAPAAVQTWRDWAQAAALPQGAELITPEQTQERMRTSFDRAGAFLRLTALLSALLAGIAIALSAQRYARRKTAEVALLRALGTPRRRVLGLLLGTLGALAVPATALGMLLALGLSQLAWLLASQLFGNVPTVLPLAPSFAAAAMGIAVLVGFALPPLARLAEVAPVAVFRQSMQRRVRRFDALYLIPALVALGLIWSQSSSLTLAGILAASLLGVALIAALLAGALLWLARRIAPGAHPALRLGLAALARRPALSVIQATALSLGLCALLLLAIVAPALLQGWRQELPADTPNWFALNLQDDQRAGFTQALVTVGGDQLNMLPLAVGKLTAINGRPIDQLAFADERAKDWTDRQLRLSWADALPPSNQVIAGQWHGAQPAQAEVSIDTMWRDMFALKIGDTLRFDVGEGRIDAKVSSVRKVDWSSFRVNFFLLLDPAHASELPHTWLASFHLPRGHATGLAQLSRDYSNLSLVDVDSLLDRVREIVDRVGNAVRWILGFSLLAGALVLAAALAASAAERRHEAALLRTLGARRAQLRVAAACEFALLGLVAGLTAALGAAGAGVWLGQAVFHIEHFVPPLWPLVGGAVGAGLVVMLLGLAGTRKVSRTPPMRLLREG
>NC_020541.1|WP_015447013.1|982295_982997_-|ATP-binding-cassette-domain-containing-protein
MSDSSRPLLEARDVSKSVNGPEGRLEILSQVSLQVQPGESFAIVGASGSGKTTLLGLLAGLDTPDGGSIALDGHALQQLDEEARADLRRRLVGFVFQSFHLLPALTAEENVMLPLELEGSSDARQRARAALDAVGLGARRRHYPAQLSGGEQQRVAIARAFVHRPRVLFADEPTGNLDQRTGHHVCDLLFALNRDHHTTLVLVTHDAALAARCDRRIELEEGRVVSTGTDVPA
>NC_020541.1|WP_027490773.1|982995_983607_+|arylesterase
MRQCLWWLVFLCGIGSAQAAAPKTVLVLGDSLSAAHNIPVEAGWVHLLDARLNQMVPKWRAINASISGETSLSGRHRLPALLATYRPAVLVLELGANDGLRGLPLPALRDNLDAMVVAAQKAKVRVLLVGIELPVNYGPRYRDGLRAVYAELAQSRHVALVPFLLEGVALDPALMQADGLHPVAAAQPRVLDTVWKPLRPLLR
>NC_020541.1|WP_007507003.1|983705_984437_+|response-regulator-transcription-factor
MTVHDEQAGLILLVEDNRQIAEMVGEFLERRGYSVDYAADGVSGLHLAVSNSYDVLVLDLMLPGLDGLEVCRKLRREAKKATPVLMLTARDTLEDKLIGLEAGADDYLVKPFEVRELEARLRALIRRDRRQVSTEVLSVGDMTLDTATLRLTRDGQELTVSPIGLKLLAILMRESPRVVSRRDIEREIWGDTLPDSDTLRSHLYNLRRVIDKPFARPLLHTIHSAGYRLADLESEVASSPQTA
>NC_020541.1|WP_015447015.1|984474_985497_+|HAMP-domain-containing-histidine-kinase
MDSRVNAITFRVGAFRRRIAWVFALQFLIVAIVCVLGIYNVAHTAVVIAVIVLTTALAWLAMRREWRPVRALARVVSRWDGQLLDPESLHLEQLSAHADADVASLARGLHGFATRLASYNQRERNFTRDASHELRSPLTVIKMSVDMLAEEEGLSEFGLRSVRRIKRATREMEVLVDALLILARETGSAADEQCFVVNDALHRELDFARELLVGRPIELLLEEPARFALQGSPQAFSVLCWQLIRNACQQTEQGSVVVSVLPGSISVRNRITSQAPGSGYPVRARGADRHGFELAIAQRISERFAWPLELQAGQGQENIARIRFPHPLPADVPERSFSES
>NC_020541.1|WP_015447016.1|985536_986892_-|3-oxoacid-CoA-transferase-subunit-B
MNKVYPSAAQALDGLLGDGMTIAAGGFGLCGIPENLIGALLEAGTKGLTIVGNNAGVDDFGMGPLLKTHQVKRVYASYVGENKEFERQVLAGELELHLTPQGTLAEKLRAGGAGIPGFYTRTAFGTKLAEGKETKVFNGKEYVLEESITADLSIVKAWKGDAHGNLVFRETARNFNPMIATCGKVCVAEVEHLVPVGELDPNNIHVPGIYVDRIVQGAKYEKRIEFRTIAGVAGGKESPIRVAMARRAAKELRDGFYVNLGIGIPTMVANYIPDGVSVTLQSENGLLGIGPFPTEDQLDPDLINAGKQTITTLPGSSFFSSAESFAMIRGGHIDLSILGGLEVSCTGDLANWMVPGKMVKGPGGAMDLVSGVKRVVVLMEHTAKDGSPKIKSQCDLPLTGKQVVDLIITDLCVFSVEKGKGLTLIELNDGVTLDEVKAKTGCTFAVALPTG
>NC_020541.1|WP_007506997.1|987059_987431_+|BlaI/MecI/CopY-family-transcriptional-regulator
MAISEAEAVVMDVLWREAPRTAEEILAEVGPTQRWQEGTVKSLLNRLLRKKAVHAERDGRRYLYTPLLTREQYVQQESKGLLDRLFGGRVAPLVAHFSEQRKLSKKDIAELRKLLKELDDEQC
>NC_020541.1|WP_015447017.1|987417_988983_+|peptidase-M56
MSSVELTGIDWLGRGWLLILAFTAAALMAAALRRPCRRLFGAERAFQLWLLPPLALLASQLPHATAAPAVMLSPVVVAITSAATALPVYAAGPSATDWRVWTMLLWLLGSMASLLQAVLAQARYRMRLCGATSVVDAQSRWPVLRAPGADVGPALIGAWHARIVLPADFEQRYDAGERALILAHETAHARRGDGWWCLLARVLAALFWFHPLAWWALAALRHDQELACDAAVLREHGVQRRSYANAMLKTQSAAFALPVGCTWSPRHPLTERIAMLKLPSPNRWRRNTGMIAGIAVAIVVAGSVYAASAPQGERPAWKVRADHATWKVRGQEYQLDMQVELSTDAGHERHAENVALALCMAPGKAAMASVGTLRVEATTVPAGDRQVRIDLAVGNTGESPLAHSQLLGALGHKLHAAGTGGDGKHAYVIDVTPQAGCPARAVAEASPVKVTGHVTNSTARAVAESIAAKAGWTLANPEALGHAPVTLSFNDMPAGTAMQRVADLAGMKLVLDGERVRFTPR
>NC_020541.1|WP_041676669.1|989082_990078_+|isoaspartyl-peptidase/L-asparaginase
MSHAAVSPVLVIHGGAGVIKRDMTPAQEQAVRTAMAHALQDGYARLKAGGSALDAVAAAITVLEDDPNFNAGKGAVFTHDGSNELDAAIMDGNTLRAGAVAGVEHVKNPILLARAVMEQSPHVMLSGTGAEAFAKEHGIALVDSSYFRTEARWQQLQKALKEDAAKQPHADVETAKHFGTVGAVALDAQGRLAAGTSTGGMTDKRWGRIGDSPIIGAGTYANSGCAVSGTGWGEFYIRTVAAHQICMKVTQMRVPLKRAAAEVINQEIPSMGGNGGAIALDAQGHISIPFNTDGMYRGWIGADGVPHVALYGDEDDGTAELPAPADSVAQP

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Crispr_ID: NC_020541_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020541_3

3295043-3295139

Orphan

Consensus_repeat	Method
CGTCGATGCTGCGCGCCAGCGGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020541_3

>merge|NC_020541|3|3295043-3295139|CRISPRCasFinder
CGTCGATGCTGCGCGCCAGCGGCAGTGCCGCGCCGACGAAGCTGGGATCACGCCACGGCGCGCGTATCGTCACGTCGGTGCTGCGCGCCAGCGGCAG

>NC_020541|3|3|3295043-3295139|CRISPRCasFinder
CGTCGATGCTGCGCGCCAGCGGCAG	TGCCGCGCCGACGAAGCTGGGATCACGCCACGGCGCGCGTATCGTCA
CGTCGGTGCTGCGCGCCAGCGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_020541.1\|WP_015448624.1\|3298707_3299625_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_020541.1\|WP_015448614.1\|3288271_3290017_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NC_020541.1\|WP_007511623.1\|3301703_3301973_-\|metal/formaldehyde-sensitive-transcriptional-repressor	unknown	unknown	gnl\|CDD\|197388
NC_020541.1\|WP_015448615.1\|3290241_3290991_+\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_015448628.1\|3302028_3302982_+\|CDF-family-Co(II)/Ni(II)-efflux-transporter-DmeF	unknown	unknown	gnl\|CDD\|224151
NC_020541.1\|WP_015448627.1\|3301344_3301695_+\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_007511603.1\|3292024_3293047_+\|putative-sulfate-exporter-family-transporter	unknown	unknown	gnl\|CDD\|225411
NC_020541.1\|WP_015448621.1\|3296642_3297452_-\|dioxygenase	unknown	unknown	gnl\|CDD\|153375
NC_020541.1\|WP_015448623.1\|3297950_3298583_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224996
NC_020541.1\|WP_015448625.1\|3299651_3300413_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_020541.1\|WP_155950943.1\|3300560_3301346_-\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_015448620.1\|3295941_3296646_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223477
NC_020541.1\|WP_157769759.1\|3293147_3293465_-\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_015448616.1\|3291030_3291924_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176112
NC_020541.1\|WP_007511593.1\|3286507_3287413_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_020541.1\|WP_015448613.1\|3287851_3288121_+\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NC_020541.1\|WP_027485015.1\|3285537_3286503_+\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|273214
NC_020541.1\|WP_007511595.1\|3287450_3287843_+\|PTS-fructose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225446
NC_020541.1\|WP_015448622.1\|3297515_3297905_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_020541.1\|WP_015448618.1\|3293736_3294429_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750

Protein	Function_ID	Function_description	E-value
NC_020541.1\|WP_015448624.1\|3298707_3299625_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.84729e-90
NC_020541.1\|WP_015448614.1\|3288271_3290017_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NC_020541.1\|WP_007511623.1\|3301703_3301973_-\|metal/formaldehyde-sensitive-transcriptional-repressor	gnl\|CDD\|197388	cd10153, RcnR-FrmR-like_DUF156, Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156. This domain family includes various transcriptional regulators that respond to different stressors. It includes Escherichia coli RncR (formally known as YohL, nickel and cobalt-sensitive), and E. coli FrmR (formally known as YaiN, formaldehyde sensitive). Escherichia coli RncR represses expression of the gene encoding the nickel and cobalt-efflux protein RcnA; RcnA may act through modulating NikR, to repress the NIkABCDE nickel transporter. In vitro, purified RncR binds to the rncA promoter DNA fragment in the absence of Ni2+ or Co2+, and the affinity of RncR for this promoter is reduced in the presence of excess nickel. Escherichia coli FrmR regulates the formaldehyde degradation frmRAB operon. This family belongs to a larger superfamily that includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily. In this family, however, not all these residues are conserved; in E.coli RcnR and FrmR there is a His or a Thr instead of the second Cys (C-H-H or C-H-T) respectively. For E. coli FrmR, an N-terminal His residue, not conserved in all members of this family, is also involved in metal binding (H-C-H-H). A conserved Tyr and a Glu residue that facilitate allosteric regulation of DNA binding for CsoRs are poorly conserved in this family.	3.22022e-31
NC_020541.1\|WP_015448628.1\|3302028_3302982_+\|CDF-family-Co(II)/Ni(II)-efflux-transporter-DmeF	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.4261e-72
NC_020541.1\|WP_007511603.1\|3292024_3293047_+\|putative-sulfate-exporter-family-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	4.65429e-80
NC_020541.1\|WP_015448621.1\|3296642_3297452_-\|dioxygenase	gnl\|CDD\|153375	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.	4.1539e-124
NC_020541.1\|WP_015448623.1\|3297950_3298583_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	4.16526e-43
NC_020541.1\|WP_015448625.1\|3299651_3300413_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.00678e-12
NC_020541.1\|WP_015448620.1\|3295941_3296646_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	3.20239e-29
NC_020541.1\|WP_027485015.1\|3285537_3286503_+\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|273214	TIGR00679, HPr_kinase/phosphorylase, Hpr(Ser) kinase/phosphatase. Members of this family are the bifunctional enzyme, HPr kinase/phosphatase. All members of the seed alignment (n=57) have a gene tightly clustered with a gene for the phospocarrier protein HPr, its target. [Regulatory functions, Protein interactions, Signal transduction, PTS].	1.55275e-129
NC_020541.1\|WP_015448616.1\|3291030_3291924_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176112	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.11493e-74
NC_020541.1\|WP_007511593.1\|3286507_3287413_+\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	6.21699e-146
NC_020541.1\|WP_015448613.1\|3287851_3288121_+\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	1.51675e-33
NC_020541.1\|WP_007511595.1\|3287450_3287843_+\|PTS-fructose-transporter-subunit-IIA	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	2.61692e-22
NC_020541.1\|WP_015448622.1\|3297515_3297905_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.04418e-15
NC_020541.1\|WP_015448618.1\|3293736_3294429_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	4.74536e-62

>NC_020541.1|WP_015448618.1|3293736_3294429_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MNLLAIETATEACSVALIHGDELIARSEIAPRRHTELVLPMADALLAEAGIGRHALDAIAVGRGPGAFTGVRLAVSLAQGMALALDLPVITVSSLAALALEAPEEAGTAILAVIDARMGEIYAACYRRDDGGGLLALDEERICTAETLVLPEAGAWQVVGSGWASYATALSQRLTGTLHSADGLRYPQAAHVAELALREFEAGHTQAPELALPVYLRDKVALTLVEQGKA
>NC_020541.1|WP_157769759.1|3293147_3293465_-|hypothetical-protein
MILGLVAAVGVWATKQSLMMKFRRKPGFGAAVAVSISDAGVEVDGNQSRSKLEWSTYPAAVRFNDGILLKRPHSIRWLPDSAIVDGSAADATELVASKTCLRQVR
>NC_020541.1|WP_007511603.1|3292024_3293047_+|putative-sulfate-exporter-family-transporter
MNTSTLPTPSSLLRQRTPGLLLALAIGLLALWLGRLAPLIGGPVIGIVLGILVRNLLSPGERFNPGIAFAGKKVLQWSIIALGFGLSLDQVAKTGLESLSVTLVTMSVAFLAAWGLGRWLGVHDKLMVLIGVGTAICGGSAIAAVTPIIKPDEHDTAFAISTIFLFNLVAVLLFPLLGHLLHLSDLGFGLWAGTAINDTSSVVAAGYSYSHAAGDYATIVKLTRATLIIPVCLVLAFAVAAREKKHGAADFSLRRIFPWFILWFLVASAVRTAGLIPVAIQPALHMLAEFLIIVALTAIGLSANLRRMVSSGARPILLGLGVWAAVSVSSLAVQLVIGRL
>NC_020541.1|WP_015448616.1|3291030_3291924_-|LysR-family-transcriptional-regulator
MVNISPRQLDVFVQIALHGSVRAAAERLHLTQPAASMALAEMERQLDAPLFDRERGRLRLNARGRELLPLAQELLERHAEFGRRGREEGAALSGELRIGASNTVGNYLVGELLGGFVRAHPQVAIRLRVANTETIAAAMLEHSLDIGCVEGPVAHPLLEVRPWRDDRLVVCAPPEHPLARRRGLKPADFAGARWVLREPGSATRATSERVLAQLPPGETVLELDQIEAIKQAVVAGLGIACLPAVAVTDALATGRLKALKTPFLDLRRKLSLLLHRRQYRGALLDAFLEGIDPSRGR
>NC_020541.1|WP_015448615.1|3290241_3290991_+|hypothetical-protein
MPAPALAQSAFDGTWKIDLNKVEMPKKPDVLLLQDGMYHCKSCVPPVSVKADGSDQPVSGHPYYDTMAVSVVDDHAIHEIDKKAGKVIADSTMTVAADGKTANFEFTENRGDSTAPVTGNGTMLRVAKGPAGAHAISGSWRTKSYGSVSDNALTRSYKVDGDTLHMHTPTGESYSAKMDGSDTPYQGDPGTTSVAVKKLGRRTVQETAKRDGKVISVAKMTVAADGKSMTIAVDDKLHGSHMSFVAMKQ
>NC_020541.1|WP_015448614.1|3288271_3290017_+|phosphoenolpyruvate--protein-phosphotransferase
MRHLLTGTIAAHGMALGRARLVQPSRYIVDTRPLAEEEIEGELAKLRQALDTARQELRELRGKLHGALAREVNEFIDAHSLLLDDAELLRGLDDLVRIGRYRPGAALKKQRDRLSAVFEAMDDPYLRSRKEDVEQVINRVISALQRQTSPEERKLAARVGEILIADSIAPGDMAQLAGNGLLGVVASSGSAYSHSAILARSLGLPMLVGTRDALSNIHDDDLILLDAERGEAVVHPAAQDLSRYRSWQREAAAEGRRLAKLANAPTRTRDGVEIALLANAETPADVALARARGADGVGLYRTEFLFLKHKGLPSEDEQFIAYRDLVMGMGGLPVTIRTLDLGADKADAAGLTLRGEDNPALGVRGVRLSLRYPAVFTTQIRAILRAACYGPVRVLVPMVTQPDELIAVRTLFKLARQDLKREAIDLPEKLPLGAMIEVPAAAINVRALLEHADFLAVGTNDLAQYVLAADRGNDALENIYNPLQPALLRLISHVLTSGRRAKKPVSLCGEIAGDVNFTALLLLLGLDEFSMHPAQILQVRDRLATLDYAHLRRHLPRLLRAPTHEQAEAMLNQIVDAATAH
>NC_020541.1|WP_015448613.1|3287851_3288121_+|HPr-family-phosphocarrier-protein
MLEKEIVITNRLGLHARASAKLVQLVQGFKSTVWLLSKGREVNAQSIMGVMMLAAGLGSPLTVRVEGPDEEAALDAVVALFERKFDEGA
>NC_020541.1|WP_007511595.1|3287450_3287843_+|PTS-fructose-transporter-subunit-IIA
MSVGVLLMTHEAVGQALISAAHHVMPRLPLQVAAVEIPPESDPDVMRQLTARHARELDTGAGVLVLADLYGATPCNIGLSLGALGVHLRCVSGLNLPMLLRVLNYAEKPLDELAEIAASGGRGGIFIDHA
>NC_020541.1|WP_007511593.1|3286507_3287413_+|RNase-adapter-RapZ
MSDDTRPPGTLADPHEIHLIVLTGMSGGGKTVALRALEDLEFYCVDNLPSVLLPQLVNAATSGDRRGRPRRIAVGVDVRNRGTDFAHMPTVLSELAGAGVQVHLIFLDCRDDVLIKRYSETRRRHPLATRGVSLADAIVEERRLLRPLIAIAEKVIDSSELNVHQLRRLVATGYAQATEGLTLMFQSFAFRRGLPLDADFVFDARCLPNPHWEPRLRPLSGKDAPVREFLDAAPLVGEYFADTARWLDAWLPRFEQDDRSYVTISIGCTGGRHRSVYLVEKLAAHYRSHREGVLTFHRELE
>NC_020541.1|WP_027485015.1|3285537_3286503_+|HPr(Ser)-kinase/phosphatase
MDRISARQLYDGVHERMALRWVSGMRGESRALEPGAAQARRPSLIGYLNIIYPNKIQIIGSEELNYLDGLDSRQRWEVMHKIAAYQPVALIVTKDQAVPADLREVAEETNTPLWISPKRGHELLTYLQYHLARTLAAKITLHGVFLEVFSIGVLITGEAGSGKSELALELISRGHRLVADDATEFTLIAPDVIDGSCPELLQDLLEVRGLGVLNVREMFGHMSVKASKYLRLVVHLKPLRDGELNPDDGGDALTRLTGDIGHREVFDVKVPMITIPVASGRNLAVLVEAAVRSHALKSKGIDPAQTFIDRQAHQLRRLPPW
>NC_020541.1|WP_015448620.1|3295941_3296646_-|alpha/beta-fold-hydrolase
MKTLSPLSVDPAFALAFRTLQPLPARPTSLLVLLHGVGGNEGNLAALGAEAGGDTLVVLPRGPIALGPQAFGWFRVAFSSSGPQIVASEADASRRTLIDFIGQLQQAHGIDAAHTVVAGFSQGGILSASVALTAPERVAAFAVLAGRILPELEAQLADAPRLSTLRGYIAHGTHDDKLPVGWAQRASDWLDRLGVEHLTKRYPAGHELGAAMRADFLAWLARDDQRWNRPAAGQ
>NC_020541.1|WP_015448621.1|3296642_3297452_-|dioxygenase
MTAPSIFISHGSPMFALEPGRLGPNLRAIGQSLHGITAVLVVSPHWQTRGVRVGASAAPETIHDFGGFPPPLYQLQYPVPGTPALARDAANLLAQAGFEVALDERRGLDHGAWVPLRYLFPQADVPVFQVSLPQHIDAAGALRLGQALAPLRERGVLVVGSGSLTHNLYEFRQAIRDLQYAQQFVDWVRAAVAARDVAALVDYRRRAPHAERAHPTEEHYLPLLVAVGASAGTDTARLVEGGMSYGVLSMDSFAFGLPDAAHTPQEPAA
>NC_020541.1|WP_015448622.1|3297515_3297905_-|DoxX-family-protein
MNTSLTLFGRVGLSLIFIISGWGKIAAYAGTQQYMASAGVPGSLLPLVIALELGGGLAVLTGAFTRWIALALAAFSLASAALFHAHLGDAAQAINFWKNVAMAGGFLMLAAQGAGTLSLDHLRSKRRNA
>NC_020541.1|WP_015448623.1|3297950_3298583_-|NAD(P)-binding-domain-containing-protein
MNITLIGTGNMGSALAKQLTRAGHAVRITARDPAKAQALAAANPGAVAAAPADALAGSDVVIVATGYADAVPALRSLGSLAGKVVIDITNPLTADYMGLTLGHDTSAAEEIAKALPEAEVVKALNTLFAQVLADGPQFADGQVAPAFFAGDSERAKQTAKALIESLGFAAIDAGPLKNARYLEPLAALNIYLGYGAGLGTSMAPTWIHKA
>NC_020541.1|WP_015448624.1|3298707_3299625_+|LysR-family-transcriptional-regulator
MDKFQEMASFVAVVEAGSFVGAAEASGLSKAAVSRHVAELEQRLGARLLQRTTRRLSLTDDGQLFFARAKEMLAAIDEAESEISSRSGEPSGRLRINAPLSFGILQLAPLWPRFARLYPKVSLDIELSDRVVDLVEEGYDLAVRITNLPSSQLVSRQLASTRMIACASPPYLARHGTPQHPQELAQHEVISYSYFAAGDEWTFIAPDGGPAVVRTHARIHANNGDTCRAAALEHQGIILQPDFIVADDLRRGDLVELMPTWRAMTLGIHAVYPSRKHLPIKTRRLVDFLVEALAEPGWTVRRAPG
>NC_020541.1|WP_015448625.1|3299651_3300413_-|class-I-SAM-dependent-methyltransferase
MSVERGDHVINWFQAGGQHYARFRPEHPPALAAFLAAASPDTCFAVDVGGGSGQLAAQLGAHFDSVLGLDPSADQIAHAPVSEPVRYAQASAEHLPVSDRSTSLVAAAQAAHWFDLPAFYAEVRRIARAGAVLALVSYGVPKLDEELDERFAHFYRNEIGPFWPPERRRVDRGYADLDFPFAEFAPPAMAMRKAWSLAELVGYVSTWSAVKHAVKQGHGQVIECFVMDLATRWGDPETRRSVTWPINMRTGIV
>NC_020541.1|WP_155950943.1|3300560_3301346_-|hypothetical-protein
MKPPPTPDGVVEEPSSILLQWLKAHKEVARCIAGTAVNSLRPGFRQDTLPAHVDCVLVVAPVMQQEADTVSTYHGTNVPRYLYHGVPLGWRAEQIVAEHARLGGGFALDIPVPVEIEGPYSIPERKGWLHYRGTVRRLAEGVRAGDAACAELAIRYIEVHYIGSYAGYLHARLASALKHATLDAGQRRRLHDHFAALCLRGEQTHEFKEYFRLWRRIAHLSELEGVLVAIRALPEGERQAAWLASRLGMERGNAATKAAMP
>NC_020541.1|WP_015448627.1|3301344_3301695_+|hypothetical-protein
MAKTYLFLKPSELPLSASDLSAESVSPIGAEEVATCLKQALPSLAWSSPTEASGETENGWVEFSQPGEGSTRSLALRCSLRSDYSSLVQSLCDRFGWVAFDQTPMMFQPHRIPTAV
>NC_020541.1|WP_007511623.1|3301703_3301973_-|metal/formaldehyde-sensitive-transcriptional-repressor
MSHVQENRRKLVARVRRIGGQLASLERAIEGDEECGAVLQQLAAVRGAVNGLILQVMEGHLRAHVAGNGNAKQQDELLPVLAVLRSYLK
>NC_020541.1|WP_015448628.1|3302028_3302982_+|CDF-family-Co(II)/Ni(II)-efflux-transporter-DmeF
MPAPDIAPFIHSHQFNHADAKAERNTRHVVFITAAMMVVEIVGGYWLNSMALLADGWHMSSHALAMGLSVMAYVLARRYAKDGRFAFGTWKIEILGGYSSALLLAVVAALMMVQSLERLFVPAAIQYDDAILIAVLGLGVNLLCAWLLKGEHPHEHGHAHGPDHGHAHGHGHAGHRHHDVNLRAAYLHVIADAATSVLAIVALVGGKLYGAAWLDPAMGIVGSVLVARWAWGLLRESGRILLDAEMDQPVVEEIRDVVRQRFTTAAVSDLHVWRVGRDSYACILGLVASSAIRAEDVRRELAIHEELVHVTVEVAVA

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Crispr_ID: NC_020541_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020541_4

3541412-3541516

Unclear

Consensus_repeat	Method
ATTGAAAAGTGCGGCCAAGGATGGCCGCCCGTTTGATCTT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_020541_4

>merge|NC_020541|4|3541412-3541516|CRISPRCasFinder
ATTGAAAAGTGCGGCCAAGGATGGCCGCCCGTTTGATCTTCGCAATCAGGGATGATTGCAAAAACATTGAAAAGTGCGGCCAAGGATGGCCGCCCGTTTGATCTT

>NC_020541|4|4|3541412-3541516|CRISPRCasFinder
ATTGAAAAGTGCGGCCAAGGATGGCCGCCCGTTTGATCTT	CGCAATCAGGGATGATTGCAAAAAC
ATTGAAAAGTGCGGCCAAGGATGGCCGCCCGTTTGATCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_020541.1\|WP_007509511.1\|3540132_3540387_-\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NC_020541.1\|WP_015448758.1\|3535229_3537758_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|227342
NC_020541.1\|WP_015448765.1\|3547986_3548292_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225655
NC_020541.1\|WP_007509543.1\|3550673_3551510_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NC_020541.1\|WP_015448763.1\|3544298_3546464_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NC_020541.1\|WP_041676810.1\|3529781_3531926_-\|type-IV-pilus-secretin-PilQ	unknown	unknown	gnl\|CDD\|274173
NC_020541.1\|WP_015448759.1\|3537819_3538491_+\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_007509502.1\|3533898_3534957_-\|pilus-assembly-protein-PilM	unknown	unknown	gnl\|CDD\|378558
NC_020541.1\|WP_015448761.1\|3540457_3541393_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239115
NC_020541.1\|WP_007509521.1\|3543812_3544196_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NC_020541.1\|WP_041676811.1\|3547080_3547911_+\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|377309
NC_020541.1\|WP_015448756.1\|3531981_3532524_-\|pilus-assembly-protein-PilP	unknown	unknown	gnl\|CDD\|377322
NC_020541.1\|WP_007509541.1\|3549900_3550677_-\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	unknown	unknown	gnl\|CDD\|223838
NC_020541.1\|WP_007509536.1\|3548288_3548963_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|377516
NC_020541.1\|WP_007509529.1\|3546590_3546881_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NC_020541.1\|WP_015448757.1\|3533173_3533899_-\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|225707
NC_020541.1\|WP_015448760.1\|3538561_3539857_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NC_020541.1\|WP_007509498.1\|3532523_3533177_-\|type-4a-pilus-biogenesis-protein-PilO	unknown	unknown	gnl\|CDD\|225708
NC_020541.1\|WP_015448762.1\|3541615_3543730_-\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NC_020541.1\|WP_007509539.1\|3549014_3549866_-\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	unknown	unknown	gnl\|CDD\|275223

Protein	Function_ID	Function_description	E-value
NC_020541.1\|WP_007509511.1\|3540132_3540387_-\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	4.40752e-50
NC_020541.1\|WP_015448758.1\|3535229_3537758_+\|penicillin-binding-protein-1A	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NC_020541.1\|WP_015448765.1\|3547986_3548292_-\|STAS-domain-containing-protein	gnl\|CDD\|225655	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only].	4.82381e-11
NC_020541.1\|WP_007509543.1\|3550673_3551510_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	9.8351e-122
NC_020541.1\|WP_015448763.1\|3544298_3546464_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NC_020541.1\|WP_041676810.1\|3529781_3531926_-\|type-IV-pilus-secretin-PilQ	gnl\|CDD\|274173	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. [Cell envelope, Surface structures].	1.98648e-176
NC_020541.1\|WP_015448756.1\|3531981_3532524_-\|pilus-assembly-protein-PilP	gnl\|CDD\|377322	pfam04351, PilP, Pilus assembly protein, PilP. The PilP family are periplasmic proteins involved in the biogenesis of type IV pili.	5.88789e-68
NC_020541.1\|WP_007509502.1\|3533898_3534957_-\|pilus-assembly-protein-PilM	gnl\|CDD\|378558	pfam11104, PilM_2, Type IV pilus assembly protein PilM;. The type IV pilus assembly protein PilM is required for competency and pilus biogenesis. It binds to PilN and ATP.	1.59986e-171
NC_020541.1\|WP_015448761.1\|3540457_3541393_-\|nucleoside-hydrolase	gnl\|CDD\|239115	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR). .	1.24409e-101
NC_020541.1\|WP_041676811.1\|3547080_3547911_+\|VacJ-family-lipoprotein	gnl\|CDD\|377309	pfam04333, MlaA, MlaA lipoprotein. MlaA is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. MlaA is required for the intercellular spreading of Shigella flexneri. It is attached to the outer membrane by a lipid anchor.	1.10785e-84
NC_020541.1\|WP_007509521.1\|3543812_3544196_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.10333e-56
NC_020541.1\|WP_007509541.1\|3549900_3550677_-\|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	9.48527e-80
NC_020541.1\|WP_007509536.1\|3548288_3548963_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|377516	pfam05494, MlaC, MlaC protein. MlaC is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. This family of proteins is involved in toluene tolerance, which is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation. Many proteins are involved in these processes.	4.67946e-52
NC_020541.1\|WP_007509529.1\|3546590_3546881_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.16973e-23
NC_020541.1\|WP_015448757.1\|3533173_3533899_-\|PilN-domain-containing-protein	gnl\|CDD\|225707	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion].	5.07e-43
NC_020541.1\|WP_015448760.1\|3538561_3539857_-\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NC_020541.1\|WP_007509498.1\|3532523_3533177_-\|type-4a-pilus-biogenesis-protein-PilO	gnl\|CDD\|225708	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion].	5.64284e-74
NC_020541.1\|WP_015448762.1\|3541615_3543730_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NC_020541.1\|WP_007509539.1\|3549014_3549866_-\|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	1.02495e-44

>NC_020541.1|WP_015448761.1|3540457_3541393_-|nucleoside-hydrolase
MSKPQLLIDTDPGVDDALAILMAYAHADIAGLSIAAGNVGLGHTVRNARTLVDLAGAATPVFAGCSTPLVRAADEDAAFVHGQDGFGDIGFAEPAAALADEPAALALLRLTHERPGELTLVALGPLTNLALALRLDPGLPGRVARLVVMGGAVTGHGNTGKVPAEFNVGFDPEAAHVVFEAFPAFDLVDWEATLRHAFDDAEFDRWLAAGDRRAAFFGKIMGAARRYNAKHDRRGVIAADALAMAVALDPSIVTRRETRAVAVELDGRLTRGATVVDWSARLGWPARANIVLEVDQIRFAAMVRRALGVPG
>NC_020541.1|WP_007509511.1|3540132_3540387_-|type-B-50S-ribosomal-protein-L31
MKPDIHPNYVPVVFQDLSSDFAFLTKSTMSSKETIKWEDGNEYPLIKVDISSHSHPFYTGKQKTLDVGGRVDKFRRRYAGSVKE
>NC_020541.1|WP_015448760.1|3538561_3539857_-|citrate-synthase
MSDPKTVKLVDESSKRSSELPLVSGTLGPACIDIATLYKDTGHFTYDPGFGSTASTKSAITYIDGDQGVLLYRGYPIEQLAESSSFLEVAYLLLNGELPKPAEFATFEHDVAHHTMLHESLKNFFQGFHHDAHPMAMLAAAVASLSAFYHDDLNVDDPADRKLAAIRLIAKMPTIAAACYRYSIGWPMRYPRNNLEYVDRFLHMMFEVPSEPLQMNPVAAKALDLLFILHADHEQNASTSTVRLVGSTGANPYASIAAGITALWGPAHGGANEAVLKQLQEIGTPDNVESAILRAKDKNDSFRLMGFGHRVYKNFDPRAKIIREMCHKVLAELGVNDPLLDVAMKLEEAALKDEYFVERKLYPNVDFYSGIIYKALGIPTEMFTVMFAIARTAGWIAHWIEQHETPGSRIGRPRQVYTGADVRNYVPTAKR
>NC_020541.1|WP_015448759.1|3537819_3538491_+|hypothetical-protein
MSRGDHHRIHAHDRLQRNRLRVAQEAARLMSEHGIRDFHHAKLKAAERLGILDNQALPRNLEVEQALREHQRLFLADSQPQLLRQRREAAVEAMRFLAAFEPRLVGSVLEGTADAHSAVCLHVYSDDPEAVTLYLRERGVPIETQVRRLRYSRDEQPEYPVLLFAADELPFDLTVLPRDALRQAPLDRADDRPMRRASLAQVEMLLDEDVDDTFEQRLSAALR
>NC_020541.1|WP_015448758.1|3535229_3537758_+|penicillin-binding-protein-1A
MQIFKRLLRWALVLAFSGLLLAVVAVGVAYWLIAPRLPSVAELKNYPMQVPLRVLSADGKLIASFGETRRIPVDIGNVPDRLKHAVLSAEDADFYHHPGVDWHGIARAGWHVLVTGGDKGPGGSTITQQVARNFFLSPEKLYSRKLTEIFIALRIEHELSKDQILELYLNKMFLGHRSYGVAAAAEYYYGKTLDQLTVAECALIASTFQLPSAVNPINSPKRAMARRNWVLGEMLRHDYITRAVYEQAIAEPNHAYPHEQPIEVDAPYLAEMVRRQVLDRFGNDALTEGYVVRTTLQSSRQQAAVEALRDGLVAYDRRHGWRGPEAHQDLPAGAGEADLDGLLSAYASVSGMQPGVVTASDAKQATVYLSSRESVILDLAAVSWARPHISDDRVGAAPTRVDGVLKRGDIIRLARDDKGEWQLAQIPEAQAALASIAPEDGSIQALVGGFNFVRSKFNRAVMAARQPGSSFKPYLYSAAFERGFTPASIINDAPLALPDPSRPNGIWTPSNDDDKFAGPMRLREALVQSKNLVSVRLLDAVGVRYMREYATRFGFSQDAMPANLSMALGTASVSPMGMARGYAVFANGGYLVTPYFIHEIDDRTGQAVYVANPARACRNCQERLLDTQPPGPPPAGMNPTPANNLASTSSAAPAESSSIDGVGDAVLPADAHGDGAHPPVLAPHVIEARNDYLVTSLMKDVILRGTGSAARALGRDDLAGKTGSTNDHRDAWFVGFDGELSTAVWVGFDNYNSLGRGEFGARAALPIWMSYMGSVLKGQPSSTLPMPPGISTVWINRDSGLPASSDDPDGINEMFKVEDVDRLRSQAAQQKEQDQQHAYDIF
>NC_020541.1|WP_007509502.1|3533898_3534957_-|pilus-assembly-protein-PilM
MGLFTPKKPALIGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEIEAVGDAIRRALARSGSKLKHAAAAVAGSAVITRIIPMTGDLSDDDLEGQIQVEANQYIPYPIDEVSLDYEVLGPVRDNPDMNNVLLAASRTENVDMRVAALDLGGLTAAVIDVEAFAMENAFAMIADQLNVGRDALVAVVDIGATMTTLSVLRNQRTIYSREQVFGGKQLTDEIMRRFGLSYEEAGRAKRKGGLPESYETEALEPFKESLIQQISRLLQFFFAGSEYSKVDQVVLAGGCASIEGLGQMLEEQLGVPCVVANPLARMSLSPRVQAQSLAQDAPALMIAVGLALRSFD
>NC_020541.1|WP_015448757.1|3533173_3533899_-|PilN-domain-containing-protein
MAHVNLLPWRVARRKQREREFYMQLAAAFVAGLGVLLLWVFWMDQRIDNQNDRNTYLQTEIKQLDVRIAKIKDLEKVREHLLARKQIIEQLQADRSQMVHLFDELVKTIPASARLSGLKQNGQSMSLDGVAQSNASVAEYMRNIEGSPWMGHADLRKTENTHNGSRMPYVFGLNVTLSKPKADEADGKTPVLPNAAGTAAASTAPAAAAKAATASPAKPAATTAPEVKPVSAPAATGGARS
>NC_020541.1|WP_007509498.1|3532523_3533177_-|type-4a-pilus-biogenesis-protein-PilO
MSFLHDIQNLDRNNVGGWPQTVKIFFTALLFGFVLLVGWYFFVSDQQDSLNSLAGKENQLKQEFSAKQAKSVNLEALQQQLDEMQDMLRQLLRQLPSKTEMPELLIDISQTAQAAGLESDLFQPGPETPKDFYAEKPIALRFTGTYHQFGTFISGVASLPRVVILTLHDVSLTPKAAGKDGTSGGQLVLQGTVKTYRYLDDEESAAANKGKPAGGAK
>NC_020541.1|WP_015448756.1|3531981_3532524_-|pilus-assembly-protein-PilP
MKNLAVVKPANVARLVLMLGAALVLAGCTRGMSDLRTWVAQEKAKKGAPIQPLPVIKTFETFTYSDQDRRDPFSPSTAELDNSVATSGPRPDANRAKQPLELFALDSLKMVGTVGTGAGMEVLVKDPGGVIHRVHVNEYMGQNYGHITAISEDHIDLVELVSNGNGGWMERPASIALDAK
>NC_020541.1|WP_041676810.1|3529781_3531926_-|type-IV-pilus-secretin-PilQ
MRHASRYMLMGLLIAGATWASAAMAATTTLKNISYDALPGGSVELHMDFGDGPVPQPKIFTTGNPPRIAVDFADTDNAAPRHLDIGKGSTSGVSAVAAGGRTRVVVELMRESSYRSRVEGNSLVLTVNNGSTDQSVTTASTIDPTKALPSSSAGPTISNIDFRRGPNGEGRVLIDFSGSGANAEMTRKGDKVLVTIDHANLPANLAQRLDTLDFATPVQSIVTRAGMGGGARMEIAVKGNVETSAYQTADQYVVEVAPKKADASKDAKLARLGQEPSYNGKRVTFNFQDIPVRSALQLIADISGLNLVASDSVGGSVTLRLVNVPWDQALDVILRAKSLDKRRNGNVVWVAPQAELAKYEQDLADAKLKAQDTAELITDYVPISYGKASDIAKLLTSGSMQGGGGSSGGNTQRGFLSPRGSVSFDERTNTLLLNDTPEKIRQLRELIAVLDKPVQQVLIESRIVVASDDFTRELGAKFGVNGRINNTEFQNAAAATPALTAGLGGGNVTSGGLNVNLPVTPAAGSFGLAILGANYAIDLELSAAQTEGRGEVISSPRVITANQQEAVIRQGQEIGYVTFQNSAGSGAGSGTATVQFKDAVLELKVTPTITADNRVYLMINVKKDALAGYVDAPGSGKIPTIDTREINTSVLVDNGQTVVLGGIYEINKANTMTKVPGLGDIPGVGVLFRKTSRTNTKAELLIFVTPRILSDTLQ
>NC_020541.1|WP_015448762.1|3541615_3543730_-|ATP-dependent-DNA-helicase-RecG
MATRPVRPAPAIGTDPGITSVGALPGVGPALVASLARLGLERVQDLWFHLPLRYEDKTRISTIADLRAGDRAQVEGVVEAVERGFRYRPQLKVAIGDASGQTLLLRFFHFNRAQAEQLLPGTRLLCYGEVRHAAQGLEMVHPNYRRLDGATVAAVDESLSPVYPTTEGLGPKRLAGVIGKALALLPPAAQLELIPPELCAKHGLTSLRDALLYVHRPPPDAHLGQLMLGRHPAQQRLAFEELLTQHLSLKRMRAAVRRRRAPELGGTGELRRLLLQGLPFRLTAAQQRVGEEVARDLVRPQPMLRLVQGDVGSGKTVVAALAALAAVESGHQVALMAPTELLAEQHLHNFRHWLQPLGIEVEWLAGKVTGKARKQVLARVAAGAPVVVGTHALMQEGVAFARLGLVIVDEQHRFGVQQRLALRDKGRDGERVPHQLVLTATPIPRTLAMSAYADLDVSSIDELPPGRTPVQTIAISNARRSEVIERIHAACGEGRQAYWVCTLIEESEQLRAQAAEVAHVELSAALAGFRVGLIHGRMKPKEKQAVMDAFKAGELAVLVATTVIEVGVDVPNASLMVIENSERLGLAQLHQLRGRVGRGAVASNCVLLYQPPLGQLARERLQVMRDTNDGFRIAEKDLELRGPGEVLGTRQTGQLSFRIADLARDAHLLPAVQQVGEHMLAEHPRQTTQLIERWIGGAARYAHA
>NC_020541.1|WP_007509521.1|3543812_3544196_-|RidA-family-protein
MSRSIISTEQAPAAIGPYSQAVRAGQTVYFSGQIPLDPATGALVDGDISAQTRRVFDNLTAVAAAAGGSLAQIVRVGIYVTDLANFAAVNAVMAEYFQQPYPARSTIEVSGLPKAAQVEVDAVMVLD
>NC_020541.1|WP_015448763.1|3544298_3546464_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MTAATPSATVDLSALPPYALALKERIAYLPEAQIDRVLRAFQLGAQAHAGQERKSGEPYITHPVAVAGILAELGLDAETIIAAILHDTLEDTELSRETLATEFGEVVAELVDGVTKLDKMRFGSRQEADAESFRKMLLAMARDIRVILIKLADRLHNMRTLGAKDAPSRRRIARETLEIFAPIAQRLGMNKFKAELQDLGFRALYPDRYRVISERIRAALGNRREAMGKIEAALSARLAADHLPARVVGRIKSPWSIYSKMRNDHKSFAQLMDVYGFRVVVDSAMSCYMALGVVHALYKPVDRRFKDFIAIPKANGYQSLHTVLLGPFGAPIEVQIRTAEMDSVAERGVAAHWAYKTDSGPANSAQARAREWLSSLVDSSASTVSSSEFIENVKIDLFPDEVYLFTPRGDILSLPRNATALDFAYAVHTDVGDHAVAARVDKKLLPLRAKLESGQLVEIITAPSAVPNPAWLEVVVTGKARTAIRQYLKHLQHEDAVDFGHRMLDRALDAQGSSLDGIPPAVLDRFLDTSKLKRLEELLSDIALGNRMPDVVASQLLASRGRKAGKPQASAHAHEKIRITGAERGVLSFANCCHPLPGDEIIGYLSSGKGIVVHREECPNVVELRKSPERCVAIEWDRDVQGDYRAELRIEVINRPGVLATVAAAIAAADSNIENVEYVERDAAAATLLFAMEVKSRKHLADVIRRVRRTGVVSGAYRYPL
>NC_020541.1|WP_007509529.1|3546590_3546881_-|DNA-directed-RNA-polymerase-subunit-omega
MARITVEDCLEVVDNRFELVLMATKRARQLEKGAEPAVNPDHDKPTVLALREIAARRIDQATIDQIDKAERERAEREALEWAAAEVDDDLSKGGDD
>NC_020541.1|WP_041676811.1|3547080_3547911_+|VacJ-family-lipoprotein
MHSPLRLPKLSRWLSVLAIALLAGCTIAKPRTDDPLEKFNRGAYKFNDAVDQAVIRPVALGYRKVTNPPVRRSFSDFFTNIRMPVTVANDVLQARPKQALQSTGRFLVNLTLGIGGFFDPASQLGLPIEDNDFGITLARWGAPEGDFLMLPFFGPNTARDVWRLPVDSYFFDPLSLYANNHHYNGLQYLPQAMYLVTLRSRAIDAESFLQSAYDPYVFIRDAYRQQRLYKIYDGNPPVEIIQQMQGLDEQNFDPEELLDQQHQWENKHPDKTGKQQ
>NC_020541.1|WP_015448765.1|3547986_3548292_-|STAS-domain-containing-protein
MTQTAAGFQLDTGTPGTLGVRGELSFDTAAAAWQAIRSALAGAPVSQLDLADVRHSDSAGLACVLAIAADAARRGQMLRVVRMPAGMQSLAQVCEVDRLLA
>NC_020541.1|WP_007509536.1|3548288_3548963_-|ABC-transporter-substrate-binding-protein
MLRSLALATAIAFGAVIAAPAFARADAVAPAAAQQAPVAVVQTIADQLATAIEGHRDELKKNQEKLISVIDEVFLPHFDIDYASILVLGQHAREASPAQRERFARAFYNSITHRYAEGLLNYTRGRVKVLPFKGDLNDKRTVVRTQVVLDDGKLVSVDYAFRKGRNGDWKAYDVIIEGISYVTNYRNQVDAEIRKVGIEQLISNIESQGSKALDTMAKDNKDKS
>NC_020541.1|WP_007509539.1|3549014_3549866_-|outer-membrane-lipid-asymmetry-maintenance-protein-MlaD
MSQPRSSYAVGTGLFIVLGFAALAYLATQTSSVANVRQGDSYVVDAQFTNIGQLKERAPVKIAGVRVGQVQSIALKPGGDVADVKLSIDKTYDRIPRDSVATIFTSGLLGDQYVGIEYGSAKQMVAAGGTLARTKSTQPLEEMLGKFFGAGGVVDNVGGSYAVKAAFTNVGTLSAGAPVKMAGVVIGSVQSVHADPVKLNAEVVLSIDKRYDAIPDDSSAAVFTSGLIGSQYVAIQPGGSPDALKDGDEMILTQSALQLEDLIGKFLVNGSPGDKKDAGNGNK
>NC_020541.1|WP_007509541.1|3549900_3550677_-|lipid-asymmetry-maintenance-ABC-transporter-permease-subunit-MlaE
MNARAPQGNNVVTQSLAQIGACGLFLLTLLGAVPRSFRYLRETVRQLWFVGAMSLTIIMVCGLFVGMVLMLQLYHVLSIFGGTSASGMVVALSVYRELGPVVTALLFAGRAGTAITAEIGLMRATDQISAMEMMAVDPIAYVATPRFLAGLIAMPLLCCVFCAMAIFGGHLVGVTWLGIDNGTFWSNMTAQVDVHTDIVNGVLLKSLAFGAVVSLIAVFQGFTTPPTSEGVAYATTRTVVASSIAILALDFVLTAFLM
>NC_020541.1|WP_007509543.1|3550673_3551510_-|ATP-binding-cassette-domain-containing-protein
MNETARATPDDAILVRIRGLTTVLNGKTIFDALDLDIPRGKITSIMGPSGTGKTTLLKHITGQMYADAGSIHLDGRDVAGLSREQLYKLREGVGYLFQNSALLTDFDVFENVAFPLRQHTKLPEVLIRNLVLMKLQAVGLRGAARLMPNELSGGMARRVALARAIVFDPQLILYDEPFVGLDPVALNQVLKLIQTLNQTLGITSVLVSHELPAVQRIAHHVALLSNGKVVAQGDPATIADDGSPWTRQFFGGEADGPIPFRYPAADYATELGFAGAAK

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Crispr_ID: NC_020541_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_020541_5

3996604-3996701

Orphan

Consensus_repeat	Method
CCGCAGCGAAGAGCTGCGGCCTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_020541_5

>merge|NC_020541|5|3996604-3996701|CRISPRCasFinder
CCGCAGCGAAGAGCTGCGGCCTCATTGAAGCAAGGTGGGCGGCGGCGGCGGCGTTTGCGGGCGTCGACGGTGATCCGCAGCGAAGAGCTGCGGCCTCA

>NC_020541|5|5|3996604-3996701|CRISPRCasFinder
CCGCAGCGAAGAGCTGCGGCCTCA	TTGAAGCAAGGTGGGCGGCGGCGGCGGCGTTTGCGGGCGTCGACGGTGAT
CCGCAGCGAAGAGCTGCGGCCTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_020541.1\|WP_007512282.1\|3984312_3984975_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350289
NC_020541.1\|WP_015449056.1\|3997849_4000984_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182589
NC_020541.1\|WP_015449052.1\|3989757_3991983_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|377178
NC_020541.1\|WP_007512329.1\|3997441_3997738_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236880
NC_020541.1\|WP_015449062.1\|4008352_4009468_+\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NC_020541.1\|WP_015449060.1\|4006982_4007576_-\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NC_020541.1\|WP_015449063.1\|4009552_4011358_+\|sensor-domain-containing-phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NC_020541.1\|WP_015449049.1\|3987272_3987470_+\|hypothetical-protein	unknown	unknown	unknown
NC_020541.1\|WP_015449059.1\|4006267_4006789_+\|cytochrome-c5-family-protein	unknown	unknown	gnl\|CDD\|225784
NC_020541.1\|WP_015449050.1\|3987574_3988519_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381307
NC_020541.1\|WP_027484071.1\|4007624_4008314_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NC_020541.1\|WP_015449054.1\|3995898_3996213_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_020541.1\|WP_015449053.1\|3992126_3995480_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223627
NC_020541.1\|WP_015449057.1\|4001197_4004437_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NC_020541.1\|WP_015449047.1\|3985062_3986175_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NC_020541.1\|WP_015449046.1\|3983300_3984236_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|227135
NC_020541.1\|WP_015449051.1\|3988607_3989630_-\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|350613
NC_020541.1\|WP_015449058.1\|4004535_4005777_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183194
NC_020541.1\|WP_007512327.1\|3996891_3997425_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237000
NC_020541.1\|WP_015449048.1\|3986242_3987163_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990

Protein	Function_ID	Function_description	E-value
NC_020541.1\|WP_015449063.1\|4009552_4011358_+\|sensor-domain-containing-phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	9.56221e-93
NC_020541.1\|WP_007512282.1\|3984312_3984975_-\|NYN-domain-containing-protein	gnl\|CDD\|350289	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins. Curiously NicB from Pseudomonas putida S16 is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine. This subfamily also includes the uncharacterized CPP15 (plasmid) protein from Campylobacter jejuni. This subfamily belongs to LabA-like PIN domain family which includes Synechococcus elongatus PCC 7942 LabA, human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.66572e-26
NC_020541.1\|WP_015449056.1\|3997849_4000984_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
NC_020541.1\|WP_015449052.1\|3989757_3991983_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|377178	pfam03971, IDH, Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.	0
NC_020541.1\|WP_015449059.1\|4006267_4006789_+\|cytochrome-c5-family-protein	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	2.24179e-22
NC_020541.1\|WP_015449046.1\|3983300_3984236_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|227135	COG4798, COG4798, Predicted methyltransferase [General function prediction only].	1.2545e-50
NC_020541.1\|WP_015449060.1\|4006982_4007576_-\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	3.83765e-41
NC_020541.1\|WP_015449062.1\|4008352_4009468_+\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	7.06632e-147
NC_020541.1\|WP_015449050.1\|3987574_3988519_+\|aldo/keto-reductase	gnl\|CDD\|381307	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR). Haloferax volcanii aldo-keto reductase is a founding member of aldo-keto reductase family 9 member C1 (AKR9C1).	1.63402e-178
NC_020541.1\|WP_027484071.1\|4007624_4008314_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	5.94481e-62
NC_020541.1\|WP_015449054.1\|3995898_3996213_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.009e-08
NC_020541.1\|WP_015449053.1\|3992126_3995480_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	9.38137e-120
NC_020541.1\|WP_015449057.1\|4001197_4004437_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NC_020541.1\|WP_015449047.1\|3985062_3986175_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NC_020541.1\|WP_007512329.1\|3997441_3997738_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|236880	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional.	8.93696e-20
NC_020541.1\|WP_015449051.1\|3988607_3989630_-\|TraB/GumN-family-protein	gnl\|CDD\|350613	cd14788, GumN, poorly characterized family of proteins related to gumN pathogenicity factor of Xanthomonas. GumN, a poorly characterized protein, is part of the large gum cluster of pathogenicity factors of the plant pathogen Xanthomonas. Except for GumN, the gum cluster is conserved, and proteins of this operon are involved in the production of xanthan, an extracellular polysaccharide that promotes plant disease. Xanthomonas campestri is responsible for 'black rot' disease in certain crop plants. GumN has sequence similarity to the Tiki/TraB protease family, but lacks the typical conserved residues of the active site.	3.00437e-138
NC_020541.1\|WP_015449058.1\|4004535_4005777_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183194	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit.	1.50689e-102
NC_020541.1\|WP_007512327.1\|3996891_3997425_-\|hypothetical-protein	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0.00117459
NC_020541.1\|WP_015449048.1\|3986242_3987163_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	4.05032e-59

>NC_020541.1|WP_015449054.1|3995898_3996213_+|helix-turn-helix-domain-containing-protein
MPKRTPPIFPAAAERLTALGARLRAARLRRRMTQAALAARADVSLPTLRKLEQGEGSSSLATLLRAMEVLGLDHDLDLLAKEDELGRRLQDIRQVGAPRGRRKS
>NC_020541.1|WP_015449053.1|3992126_3995480_+|DEAD/DEAH-box-helicase
MHNELTHLLQRAEWRSNFGDRTLERARAYAADGSVSKLRSRIENGVQMLSALVDGSHGEQYECRVDVHDHSEWLTVDCDCSCPVGVDCKHAAAMLMVAAGEVVRAAALATPAWLQAPRDEADAPDTGSPDLASWEDWLRTLQPPAPSHEAEPDRRFGVMLRGGGGSPVADLLAWPAWLRPSKRRSGNELVDPQPLQLNDRRGAVPTPPGGWSSEAAAALTTLIPRQYVLVGSQRWAPIRAVHEEQALEYLLAHFPVWFERGSAPLQRAEPQSLQLYWHEATDGSQQLRARIDAGDSVLLRGAGLWYVQPAQGRYGRVDGDLHLLDRLPHAPVLQPPQVAALRQRLQRGGTTLPEPIDRGPVEVVRERPVPVLRLRSVTLRKWAGKSHDIGIARVDFDYAGVRLPPATRKHAVERSLHEGRLREIHRDLPAEQQAVQLLEQLGAMRCGPALYEYVTRGLDFAANDVLLRPHPRKPPLAPRDWRESIDRLAAAGFRIEYEAGFPHDELVDIDAWHADIQPSGNAWFDVSLGIDVGGQRVDLLPILRRVLADPAFPRVAPARESRDASWRVAVDENRSVEIPLARLRVLIEPLLEWLEGGEALRLHRSQARTLQALADNAQLYWRGGDALRAQLALLERTTRSARAPKSFKATLRPYQREGLAWLDFLGAAGLGGILADDMGLGKTVQVLAHILGEKQRGRLEQPALVVAPTSLVGNWQSEAARFAPALKVLVIHGIARADRYDEITSHDLIITTYPLLPRDREQLLAQRFALLVLDEAQAIKNAKSQAARVVREIPATRRLAMTGTPLENHLGELWAQFDAVEPGLLGSQHQFTRLYRTPIEKHGDVDRQQRLNRRIGPLLLRRRKDDVLTDLPPKTEIVRTLELEDDQRALYETLRLAQHERVRQAVAERGLAQSGIVVLDALLKLRQACCDPRLVKLASAKKVKTSAKLDALLELLDGLLADGRRVLLFSQFTEMLSLIEAALHKRGVAHQTLTGQTPARERTALVKRFQQGNVPLFLISLKAGGVGLNLTAADTVIHYDPWWNPAVEAQATDRAHRIGQDKPVFVYRLICKDTVEEKIQAMQGRKAELARAVLEGGGASTRLRFDEKDLEALFGGM
>NC_020541.1|WP_015449052.1|3989757_3991983_-|NADP-dependent-isocitrate-dehydrogenase
MSQTPRIIYTLTDEAPFLATQSLLPIVAAFAGTAGIKVETRDISLAARIIALFPEALKEGQRLPDDLAELGKLATTPEANIIKLPNISASMPQLKAAIKELQGQGYALPDYPDAPKDDSEKDIRARYDRVKGSAVNPVLREGNSDRRAPASVKNYARKHPHKMGAWSRDSKTHVAHMGGGDFYGTEKSALIGQAGNVSIEWFGKDGSHAVLKPKTALLAGEIIDGAVMSRRALAGFIDAQIADAKQQGVLFSLHLKATMMKVSDPIMFGVAVGEFYRDVLAKHAAALKQVGFNPNNGIGDLYARLGSLPEAQQAAIKADLDAEYAQRPGVAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWNAQGQLQDVKAVIPDRSYAGVYQATIDDCKAHGAFDPATMGSVPNVGLMAQAAEEYGSHDKTFQIAGDGVVKVLDEAGTVLLQHDVEAGDIWRMCQTKDAPIRDWVKLAVSRARHTPAVFWLDPARAHDAQVIAKVERYLKDHDTSGLDIRIMDPVAATKFSLERIRQGLDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFLQENYLRWDSLGEFLALAASLEFVAGRQGSAEVDVLAKTLDQANGKFLDTDKSPSRKLGGIDNRGSHFYLALYWAQALAAQDVNAALKAKFAPLAKALTEHEATIVDELVRVQGKPADIGGYYHPDLARVSAAMRPSATFNAALALLSA
>NC_020541.1|WP_015449051.1|3988607_3989630_-|TraB/GumN-family-protein
MRSLHLVFVLALAGLSPAFAQSAATSVAPAAASTAAVADLPVVVVTGVQPGPGLWKVSKGDHVLWVLGTLSPLPRAMQWQSREVDEVIAASQQVLLEPSVQLKADVGFLGKLLLLPAAYGARKNDDGATLQQVLPPPVYARWQVLKQKYLGDDRGVERWRPLFASQELYRKALKANGLSRSGGIRANIDALAKRHGVPELATDYHVLIEHPRAAIKAFKQAAPRDVTCFIRTLDSVEHDLPAMTARANAWATGDLQALRELPDSDRRDACVAAVAGAGFAQALGLGDVPAQQRATWLAAARKALHDNAQTFALLPMDELLKPGGYLATLQAEGYQVDVPQ
>NC_020541.1|WP_015449050.1|3987574_3988519_+|aldo/keto-reductase
MQKRPLGHSPLSIAPLAFGGNVFGWSVDEKRSFELLDAFVDAGGNLIDTADVYSAWVPGNRGGESETILGKWLKQSGKRAQVVISTKVAKWTEQPGLSPVNLQQAVDGSLRRLQVDCIDLYQAHQDDASVPMEDTLGAFARLIEAGKVRAIGASNFGAARFADALAVSKRHGLPRYESLQPEYNLVRRAGYEQELEPLIRRENIGVISYYALASGFLSGKYRSAADLAKSSARGGAVKKYLNPRGLRVLAALDAVAAAHGATPAQAALAWLIARPGLTAPIVSATRVEQLHELLGATSLQLSDDEIAQVDLASA
>NC_020541.1|WP_015449049.1|3987272_3987470_+|hypothetical-protein
MHSLWKDLLFLHGHLLHKDDLDWRPEPEPAPDPASDATGSGHAAKTARHALACCASVWPRIMSPR
>NC_020541.1|WP_015449048.1|3986242_3987163_-|LysR-family-transcriptional-regulator
MGKLPLGLLQQFVLVARLGNLSRAAAQANLTVSALSHQMRQLEERLERRLFERGPRGVKLTAEGCVLLEAVGMHFDGIEHALAGYRTRHHDALTLSASPGIMSSWLVPRLPRLVAAHPELELSLQSGSTLVDFEREPVDVALRYGRGEWAGLHSERLFGEWIAPVAAPALIARMDGADPRELSRWPLLGEPNPSRRWSDWFGRSGGTPPTRYVAQFDSLDALRHAALEGLGVALGRMVTSKSLIDAGRLEVLGDNYLAVEEAYWLVYPPRSLEHRGLQLFRDWLLAEADDYRRQMSAFRPDDKPVG
>NC_020541.1|WP_015449047.1|3985062_3986175_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MKSRAAVAWVAGQPLSIEQVDVAGPKAGEVLVRIVATGVCHTDAFTLSGADPEGQFPVILGHEGGGIVEEVGEGVTSLKVGDHVIPLYTPECGECKFCRSGKTNLCQKIRATQGQGLMPDGTSRFSLNGKPLLHYMGTSTFSEYTVLPEISLAKINPAAPLDKVCLLGCGITTGIGAVLNTAKVEPGATVAVFGLGGIGLSVVQGAVMAKAGRIIAIDRHPEKFAMAKALGATDCVNVNDYPDTPIQQVIVELTDGGVDYSFECIGNVQVMRSALECCHKGWGESIIIGVAGAGQEICTRPFQLVTGRVWRGSAFGGVKGRSQLPGYVERYLAGEIKIDEMISQVLPLERINEAFELMHGGQVIRSVIHY
>NC_020541.1|WP_007512282.1|3984312_3984975_-|NYN-domain-containing-protein
MNRTAILVDGAFFLARYRKVYGERDAGDARAVAKTLFGMALEHLKAVDRPREQLYRIYFYDCPPLEKSLVKPISGDSVDFGRTGAAAFRRELHDQLRRQRKMALRLGRLAERGEWQLKRSAYQQLREGSLRWDDLRDEHFEPDMRQTQVDMKIGIDIAALTYKKLVDQIILVAGDADFIPAAKLARYEGIDFILDPMWQGIAPDLHEHIDGLQSVCPRPF
>NC_020541.1|WP_015449046.1|3983300_3984236_-|class-I-SAM-dependent-methyltransferase
MNRATRVARTGTVRLAAVVLLAAGLGLPALAGAQAARVASTETDQPADELVPPTSASDFTASQLDSVLAGSWRSAANRARDAYRHPKATLQFFGVRPDRTVIEITPGGGWYAEILAPLLHDNGHYVAAEKAPAADSEARSDDSALRRKFAADPAHYGNASIVTFDPRSPVFGPPASTDLVLTFRNVHNWVMADTAPAMFKAFFAVLKPGGVLGVVDHRAADGASLEAVKSSGYLPTDYVVKLATGAGFTLDESSEINANPKDTRDYPKGVWTLPPTLTLGEKDKAKYQAIGESDRMTLRFVKPAAPAAASR
>NC_020541.1|WP_007512327.1|3996891_3997425_-|hypothetical-protein
MKMTRQPLILAALLAATVVLGACGKKDNESAAPAPSTAPPPAATAMTPATPPAPAPAATAPMAMNNGAPLAVTVGAVELGSTVDANHKILASGTSFAPKDTIYASVDTGGSGTATLAAKWTYQDGQVVHEDSKTLNAMGPETTAFMISKPDGFPAGNYKVDISLDGKQVASKDFTVK
>NC_020541.1|WP_007512329.1|3997441_3997738_-|LysM-peptidoglycan-binding-domain-containing-protein
MGNETPRADFSNVQGGVKSTAPDAPPKADFGNVQSQVGSTADRPATYTVVAGDNLTKIAKHFYGDANAWKAVFDANRDQLSDPDRIRVGQVLKIPAKS
>NC_020541.1|WP_015449056.1|3997849_4000984_-|efflux-RND-transporter-permease-subunit
MNLSGTFIRRPIGTSLLAIGLFVGGMIGYFLLGVAALPNMQFPAIFVQASQAGADASTMASTVAAPLERHLGQVPGIETMRSSSSEGRTFVFMMFRNGTDLDSAARDVQAAINSAAPDLPSGLNGAPSYQKANPNDDPIIALALTSATQSAADLYNLSDTLLAQRLRQLPGVSSVEIAGAATPAIRVDVNLRALNAMGLSPDQLRNALSAANLTSPEGFLSNGKTTMAISATTQLHSAEDFARLVIASRNGTPVRLADVAKVYAGQQDAYQAAWFHGKPAVLMYVYKKADANVIATVDLVRDQLPLLRDYLPPATVLTPFFDGTPTIRASLHEVQATLLISLAMVILVMALFLRRLAPTLIAAVAVPLSLAGAFVVMYILGYTLNNLTLLALVIAIGFVVDDAIVVIENIIRHIDAGMSRMQATLAGAREIGFTIVSITASLIAVFIPLLFAGGVTGMFMHEFSVTLVAAIVVSALVSLTLTPALCGRFLNGHAAKEKTQPSRRARALDGFHAGMLRVYTRALNFSLRHALLFSLTPLVLIVVTFYLFGVVKTGLFPAQDTGLIWGRASSSATVSFAESRQRLERLTTMLMADPDVATVGSRLGSSRQGTSGSFNIDLKTRAEGRQDDTFAVLARLSAKAANYPDLNLRLRPVQDLPSGGGGGTSQGAQYQVSLQGNDLASLQEWLPKLQTELKKNPKLRDVGTDVDEAGLRQNIVIDRDKAARLGVSIGAIDGALYDAFGQRQVSTIYSDINQYQVVVNALPEQTATPEALNRIYVRSGSGRMIPITAFAQQQPGLAPSQITHENQYTTMDLSFNLAPGVSMGEAMAVIQATVKNMRMPGDIRVQMGNDFRRFQQSQSGMGWLILAAVLTVYIVLGMLYENLIHPITILSTLPAAGVGALLALWITGTELSVVAQIALVLLIGIVKKNAIMMIDFALVAQREHGKSPLEAAREACTVRFRPIMMTTMVAILAALPIAIGLGEGSELRRPLGIALIGGLLISQSLTLLSTPALYVVFSCLAERRKAWWARRQGRKPMVVRPGIG
>NC_020541.1|WP_015449057.1|4001197_4004437_-|efflux-RND-transporter-permease-subunit
MGFSTLFIRRPIATSLLMVAVLLLGILGYRQLPVSALPEIEAPSLVVSTQYPGASASTMAALITTPLERNLGQISGLTMMSSDSSAGLSTIILQFSMDRDIDIAAQDVQAAINQAKGTLPGNLPYPPVYNRVNPADAPILTLKLTSDSRQLREVNDLADSIIAQKLSQVQGVGLVSIAGNVRPAVRVQVNPAQLSNLGLTMEDVRSALTQANVNAPKGTLNGKTQSYSIGTNDQLSDAAEYKNTIISYKNNSPVRLSDVANVVDGVENDQLAAWANGQPAVLLDVRRQPGANIVQTVEQIRRVLPELRAALPADVHLDVFADRTVTIRASVHDVEFTLILTVFLVIGVIFVFLRRLWATIIPSVAVPLSLMGTFGVMAFTGMSLDNLSLMALTVATGFVVDDAIVMIENIVRYIEQGKDGKEAAEVGAKEIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLTIAVTISMLVSLTLTPMMCAYLLKPDQLPEGDDAHERHAAAGKRTVWSRTVSLYESSLDWVLDHQRLTMLVAGAAVVLTVFLYIVIPKGLLPEQDTGLITGVVQADDNIAFPQMEDRTKAVAEALRKDPAVAGVAAFIGAGTINPTLNQGQLSIVLKDRGDRAGLDALLPRLQHAVAGIPGVALYLKPVQDVTLDSRVAATEYQYSLSAVKSSELAGYASQMTQAMRQRPELADVDNNLADNGNALKLTIDREKASRLGVPVQTIDDTLYDAFGQRQISTIFTQLNQYRVVLEVAPEFRSSDDLLTKLTVRGNGNGALTGSNATSFGQLKSSNSATPSGIGNTGNIGFEIGAGGSIPLSSLVSAQVTSAPLVVSHQQQLPAVTLAFNVAPGYSLSDAVAAIHQVEAQLNFPPQIRGEFVGKAAEFTSSLGDEVLLLLAAIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALILCGMSLSVDGIVGIVLLIGIVKKNAIMMIDFAIEARRTGLNAREAIRRACLLRFRPIMMTTAAAMLGALPLALGNGIGAELRRPLGVSIVGGLLLSQLVTLYTTPVIYLYMERFSDWLAERRERRALAQAQASNAA
>NC_020541.1|WP_015449058.1|4004535_4005777_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MSRFWKIALIVVAVIVVAAVGFRLLHKPVPAGSAPVSAAAKNKDGKDETPPVPVTVVPVVKQNVPVYLTALGTVQALNTVTVNPQVGGQLLSLEFSEGQPVKKGQLLAQIDPRTYQAAYDQAAAKQRQDQALLETAKSNLTRSQDLAAKGYISRQDLDTLRNTAAQYEAAVAADAANVRDTQVQLNYTRVLSPIDGLAGIRAVDPGNVVTTASAIVTLTQLHPINVMFTLPEQNLDMVRRAAAKDGAGLQVTALDRTDAHPIANGGVLKVVDNQIDTSTGTFRLKSEFPNANNELWPGQFVNVRLLVNTVDGGLVIPAQAVQRGPDGDYVYQVQADSTVKMQPVTVAGEVGDSHVMIGNGLQAGERVVTEGQFRLKPGSKVNALKPGEVPAAPTAAELEKAKQDSKGGGRRRG
>NC_020541.1|WP_015449059.1|4006267_4006789_+|cytochrome-c5-family-protein
MSKSDQSVLRQFSIMIGGLVVLTVVLILAALAIHEHEPKETNPNQPARVAARLAPDGAVYAGNTGRAAMQAAADAAAKAAASQVAYGGTTDGKAIYDHLCTSCHASGVAGAPKTGDKAMWGPRLAQGIDTLVKHAIDGYHGPDGNFMPPKGGNPALTTEQVTNAVHWLTDQAK
>NC_020541.1|WP_015449060.1|4006982_4007576_-|DUF479-domain-containing-protein
MNHLAHALLAGDDEALQLGGMLGDFVRGPPDAVLLPPRVIAGIRLHRAIDAYTDAHPEVLAAKVLLPPPYRRYAGILLDMWFDRCLARDFPQWSAQPLAEYSLALRALLWRQDALLPPALRRFRGYMETHGLPAAYTDDAVFGDALGGIGQRLSRANPLASALPLLLQREAELQGRFAAFFPQLREFARAWVEEHAE
>NC_020541.1|WP_027484071.1|4007624_4008314_+|alpha/beta-hydrolase
MTPTELSTAPAGFPDVAASFMLDGPAGKLEAISDVAEAACARRGVAVICHPLTIEGGSMHNKVVTMAERALRESGLDTVRFNFRGAGESQGDYDKGRGEGDDLAAVVDWVRRMRPDDALWLAGFSFGSYVSIANAVRLHADALVSIAPPVGRWPFDAVELPRCPWLIVQGEADEIVEPQAVFDWVETLAHRPELVRMPETSHFFHRRLMDLRGAIKHAVHGWLPPKRHA
>NC_020541.1|WP_015449062.1|4008352_4009468_+|cell-division-protein-ZapE
MSEPSLAPTARYLEGVAAHRWESDPTQLALLPEFDRMHAALCTEPANGNGLLGRLKSLLGNEPPAAVPGLYLWGTVGRGKTFLMDLFAASLPHGVVLRRHFHRFMGELHEHLRALGERQSPLVEVAAGLAARCRVLCLDEFLVNDIGDAMILSGLLDALFARGVTLVTTSNTAPANLYKGGLQRARFLPAIALIEEHCHVVEMASAHDWRLRALTQAPVYLTPPGAEAHRALERIFASQARGGVQENGNLHVNGRDIPFVKRDDEIVWFEFAALCEGPRAVADYIALAKAGPTVIVANVPQFTVYSEDAAKRFVQLVDEFYDRHVKLVLTAAASITELYDGERLRAEFGRTESRLIEMQSEAYLALEHRPE
>NC_020541.1|WP_015449063.1|4009552_4011358_+|sensor-domain-containing-phosphodiesterase
MKMTQGSLASSRAGAGIAWPAGDAEPHALPGFDAVARLAATTLGTPLVALLLADGSAFWYTPPGHGDPIRLDGMLLAACRQATRRGVAEVVHDARDDARFLPVDADPAHAVIGFFACEPVFALNGQLLGALFAVDRRPHPPLHAGERNALRDAASLAGTGAALRHYLDRTDPATGLPHRNAFFADLHTHLPGADDTAWLLAVEVAPVARFNAFVRAMGHSYADALMHAVAARVQAWMTPGMQLYQVGTARLALLPAHPHDELLPARLDEFVALLREPIDCLGVPLTLQPGVGLLKVEAHELRGGDPLRRVMNAAHVAQDSVRGWAVYDRTQDERQRQDFFLVTELAAALSERAELELHYQPRVQLASGRCVALEALARWRHPTLGAVPPGVFVPLAEQAGLMRSLTDWVLDHGLAQLAAWLRDGLDVQLSLNVSSADLDATLETRLTAAARRHAVPLARLELEFTESTAMRHSDANRCHLAALREAGVGIAIDDFGIGYSNLDALRQMPASCVKIDKSLVCGLDASRHDAAVVRSMVALAHELGFRVVMEGVETGRVLEAVRGMACDEVQGFHIAHPLPAADVAGWLREHASPPPADRLPG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_020541_2	2.1\|978302\|31\|NC_020541\|CRISPRCasFinder	978302-978332	31	NZ_CP006988	Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence	43615-43645	8	0.742

1. spacer 2.1|978302|31|NC_020541|CRISPRCasFinder matches to NZ_CP006988 (Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence) position: , mismatch: 8, identity: 0.742

-gcacgtgcgccaggtatccggcaagttcggc	CRISPR spacer
gatgcg-gcgccagggatccggcaagatcgtg	Protospacer
 ...** ******** ********** ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

260625 : 285405

Synechococcus_phage(14.29%)

protease,transposase,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015446520.1\|260625_261126_+\|tail	phage tail protein	F5B3N6	Synechococcus_phage	3.8e-06	51.9
WP_015446521.1\|261140_261671_+\|tail	phage tail protein	A0A2R3ZX78	Enterobacter_phage	1.5e-08	46.6
WP_007508865.1\|261702_262236_+\|tail	phage tail protein	A0A2R4A082	Microbacterium_phage	4.9e-12	30.1
WP_157769786.1\|262313_262790_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_007508868.1\|262782_263076_-	hypothetical protein	NA	NA	NA	NA
WP_007508871.1\|263253_265131_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.3e-38	34.1
WP_007508873.1\|265298_265739_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_015446523.1\|265843_266737_+	lipid A biosynthesis acyltransferase	NA	NA	NA	NA
WP_015446524.1\|266789_267536_-	pteridine reductase	NA	NA	NA	NA
WP_015446525.1\|267606_268221_-	hypothetical protein	NA	NA	NA	NA
WP_015446526.1\|268405_270592_+	TonB-dependent receptor	NA	NA	NA	NA
WP_015446527.1\|270734_271928_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_007508886.1\|271936_272347_+	VanZ family protein	NA	NA	NA	NA
WP_027489626.1\|272323_274549_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_007508890.1\|274593_275841_-	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	1.2e-74	46.9
WP_041676645.1\|276838_280303_+	sugar-binding protein	NA	NA	NA	NA
WP_157769689.1\|280400_281276_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_007508893.1\|281359_281680_+	hypothetical protein	NA	NA	NA	NA
WP_155950937.1\|281726_281972_-	hypothetical protein	NA	NA	NA	NA
WP_051061193.1\|282289_282652_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_015446532.1\|282671_284207_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.4e-88	39.3
WP_015446533.1\|284247_285405_+\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	2.1e-52	32.0

DBSCAN-SWA_2

521152 : 560846

Bacillus_phage(50.0%)

plate,protease,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015446701.1\|521152_521716_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_007511662.1\|521762_522137_+	hypothetical protein	NA	NA	NA	NA
WP_015446702.1\|522139_522661_+	hypothetical protein	NA	NA	NA	NA
WP_007511659.1\|522691_523414_+	HAD family hydrolase	NA	NA	NA	NA
WP_007511657.1\|523437_523692_-	hypothetical protein	NA	NA	NA	NA
WP_015446703.1\|523894_524806_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_015446704.1\|525066_525525_+	putative toxin-antitoxin system toxin component, PIN family	NA	NA	NA	NA
WP_007511652.1\|525590_525779_+	CPXCG motif-containing cysteine-rich protein	NA	NA	NA	NA
WP_015446705.1\|525782_526436_-	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L2K0	Tupanvirus	2.3e-19	31.3
WP_041676848.1\|526540_526927_+	hypothetical protein	NA	NA	NA	NA
WP_015446707.1\|526931_527714_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_007511648.1\|527725_529120_-	cardiolipin synthase	NA	NA	NA	NA
WP_015446708.1\|529138_530506_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA
WP_007514701.1\|530537_531116_-	cysteine dioxygenase	NA	NA	NA	NA
WP_007514703.1\|531258_531924_-	TonB family protein	NA	NA	NA	NA
WP_007514705.1\|532447_533113_+	hemolysin III family protein	NA	NA	NA	NA
WP_007514707.1\|533109_533442_+	TfoX/Sxy family protein	NA	NA	NA	NA
WP_015446709.1\|533445_535218_-	DUF885 domain-containing protein	NA	NA	NA	NA
WP_015446710.1\|535289_535772_-	DUF456 family protein	NA	NA	NA	NA
WP_015446711.1\|535943_536720_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_027485314.1\|537236_538214_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_041676658.1\|538429_538666_+	hypothetical protein	NA	NA	NA	NA
WP_015446714.1\|538702_540304_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	5.3e-54	33.0
WP_007514723.1\|540314_540842_+\|tail	phage tail protein	NA	NA	NA	NA
WP_015446715.1\|540847_541582_+	hypothetical protein	NA	NA	NA	NA
WP_015446716.1\|541578_542325_+	hypothetical protein	NA	NA	NA	NA
WP_015446717.1\|542321_543566_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_015446718.1\|543562_545710_+	ATP-binding protein	K9MCS8	Sulfolobus_virus	2.0e-08	31.2
WP_015446719.1\|545706_545994_+	hypothetical protein	NA	NA	NA	NA
WP_015446720.1\|545995_546817_+	hypothetical protein	NA	NA	NA	NA
WP_015446721.1\|546809_547724_+	hypothetical protein	NA	NA	NA	NA
WP_015446722.1\|547733_548282_+	hypothetical protein	NA	NA	NA	NA
WP_015446723.1\|548446_550126_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_015446724.1\|550139_550919_+	hypothetical protein	NA	NA	NA	NA
WP_015446725.1\|550915_551692_+	CHAP domain-containing protein	NA	NA	NA	NA
WP_007512630.1\|551688_552345_+	hypothetical protein	NA	NA	NA	NA
WP_015446726.1\|552344_552665_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_015446727.1\|552657_553794_+	hypothetical protein	NA	NA	NA	NA
WP_015446728.1\|553804_554311_+\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_015446729.1\|554322_554646_+	hypothetical protein	NA	NA	NA	NA
WP_015446730.1\|554656_555016_+	GPW/gp25 family protein	NA	NA	NA	NA
WP_015446731.1\|555012_557736_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_015446732.1\|557732_560846_+\|plate	putative baseplate assembly protein	J9PV89	Bacillus_phage	1.5e-15	26.7

DBSCAN-SWA_3

623249 : 634087

Escherichia_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015446786.1\|623249_625796_-	magnesium-translocating P-type ATPase	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.6e-39	25.1
WP_015446787.1\|625924_627337_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	7.3e-55	30.7
WP_015446788.1\|627341_628277_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.3e-23	33.8
WP_015446789.1\|628273_628831_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.4e-47	51.7
WP_015446790.1\|628827_629718_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	4.8e-97	59.3
WP_041676849.1\|629714_630764_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	5.7e-81	46.6
WP_015446792.1\|630959_632126_+	cystathionine gamma-synthase	NA	NA	NA	NA
WP_041676662.1\|632176_632980_+	FkbM family methyltransferase	A0A222Z098	Streptomyces_phage	7.6e-09	35.1
WP_015446794.1\|633010_634087_+	NAD-dependent epimerase/dehydratase family protein	M1IBX1	Acanthocystis_turfacea_Chlorella_virus	9.9e-20	25.5

DBSCAN-SWA_4

1617441 : 1626742

Bacillus_virus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015447423.1\|1617441_1620015_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.3e-113	33.4
WP_015447424.1\|1620113_1620338_-	helix-turn-helix domain-containing protein	S5M643	Brevibacillus_phage	9.2e-05	48.1
WP_015447425.1\|1620341_1620773_-	hypothetical protein	NA	NA	NA	NA
WP_007513250.1\|1620918_1621401_-	peroxiredoxin	M1I839	Pelagibacter_phage	2.0e-20	46.7
WP_015447426.1\|1621541_1622000_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_007513253.1\|1622096_1622990_+	DnaJ domain-containing protein	A0A0G2YAM9	Acanthamoeba_polyphaga_mimivirus	4.4e-13	64.2
WP_007513255.1\|1623060_1623426_-	twitching motility response regulator PilH	W8CYM9	Bacillus_phage	5.3e-10	31.6
WP_015447427.1\|1623494_1624493_-	YhdH/YhfP family quinone oxidoreductase	NA	NA	NA	NA
WP_015447428.1\|1624515_1625112_-	TIGR00730 family Rossman fold protein	A0A2I2L3F0	Orpheovirus	9.0e-07	25.4
WP_015447429.1\|1625317_1626742_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	4.2e-42	26.0

DBSCAN-SWA_5

2083465 : 2091574

Vibrio_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015447778.1\|2083465_2083987_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	8.1e-36	60.0
WP_157769720.1\|2084153_2084363_+	hypothetical protein	NA	NA	NA	NA
WP_015447780.1\|2084346_2085885_+	ATP-dependent helicase	A0A126DN25	Acinetobacter_phage	5.5e-48	29.5
WP_015447781.1\|2085878_2086796_+	recombination-associated protein RdgC	A0A2I7RNT5	Vibrio_phage	8.3e-44	35.5
WP_015447782.1\|2086819_2087233_+	hypothetical protein	K7PHA5	Enterobacterial_phage	6.7e-17	45.6
WP_157769721.1\|2087337_2087730_+	hypothetical protein	NA	NA	NA	NA
WP_157769722.1\|2087726_2088329_+	hypothetical protein	Q71T85	Escherichia_phage	2.3e-10	37.9
WP_041676731.1\|2088325_2088754_+	hypothetical protein	NA	NA	NA	NA
WP_015447786.1\|2088750_2089734_+	hypothetical protein	NA	NA	NA	NA
WP_015447787.1\|2089769_2090411_+	hypothetical protein	I6R980	Salmonella_phage	3.7e-06	29.7
WP_015447788.1\|2090407_2090890_+	DUF1643 domain-containing protein	D4FUM9	Pseudomonas_phage	6.3e-43	53.1
WP_015447789.1\|2090991_2091363_+	hypothetical protein	NA	NA	NA	NA
WP_015447790.1\|2091409_2091574_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	1.1e-10	59.6

DBSCAN-SWA_6

2177009 : 2241848

Salmonella_phage(28.57%)

integrase,transposase

attL 2183941:2183972|attR 2243020:2243051

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157769734.1\|2177009_2178119_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015447876.1\|2178315_2178816_-	hypothetical protein	NA	NA	NA	NA
WP_015447877.1\|2178817_2178994_-	hypothetical protein	NA	NA	NA	NA
WP_015447878.1\|2178990_2179224_-	hypothetical protein	NA	NA	NA	NA
WP_015447879.1\|2179255_2180002_-	hypothetical protein	NA	NA	NA	NA
WP_015447880.1\|2179988_2180351_-	hypothetical protein	NA	NA	NA	NA
WP_041676756.1\|2180638_2182315_+	DNA-binding protein	NA	NA	NA	NA
WP_015447882.1\|2182304_2182991_+	hypothetical protein	NA	NA	NA	NA
WP_157769735.1\|2183179_2183410_+	hypothetical protein	NA	NA	NA	NA
2183941:2183972	attL	NA	NA	NA	NA
WP_015447883.1\|2183973_2187078_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.2e-48	25.6
WP_015447884.1\|2187356_2188376_+	glycosyltransferase family 2 protein	U5P087	Shigella_phage	1.6e-72	45.7
WP_015447885.1\|2188372_2190088_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_015447886.1\|2190187_2191603_+	TolC family protein	NA	NA	NA	NA
WP_015447887.1\|2191599_2192652_+	multidrug transporter	NA	NA	NA	NA
WP_015447888.1\|2192648_2195783_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	4.5e-73	25.0
WP_041677002.1\|2195791_2196469_+	response regulator transcription factor	NA	NA	NA	NA
WP_015447890.1\|2196458_2197703_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_015447891.1\|2197787_2198969_+	MFS transporter	NA	NA	NA	NA
WP_015447892.1\|2199058_2199460_+	GtrA family protein	NA	NA	NA	NA
WP_015447893.1\|2199550_2200714_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_015447894.1\|2200808_2202452_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_015447895.1\|2202509_2202734_-	hypothetical protein	NA	NA	NA	NA
WP_015447896.1\|2202783_2205867_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	7.6e-57	26.4
WP_157769805.1\|2207089_2208694_-	EAL domain-containing protein	NA	NA	NA	NA
WP_015447899.1\|2208771_2209803_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_015447900.1\|2209832_2210363_-	acyloxyacyl hydrolase	NA	NA	NA	NA
WP_015447901.1\|2210595_2211009_-	universal stress protein	NA	NA	NA	NA
WP_015447902.1\|2211102_2212632_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_015447903.1\|2212913_2213381_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015447904.1\|2213546_2214677_-	ABC transporter permease	NA	NA	NA	NA
WP_015447905.1\|2214673_2217409_-	ribosome-associated ATPase/putative transporter RbbA	A0A2H4PQG7	Staphylococcus_phage	9.2e-22	32.5
WP_081602816.1\|2217405_2218242_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_081602817.1\|2218229_2219288_+	FUSC family protein	NA	NA	NA	NA
WP_015447907.1\|2219293_2219503_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_037090337.1\|2219532_2220462_+	HlyD family secretion protein	NA	NA	NA	NA
WP_015447909.1\|2220458_2221814_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_008209282.1\|2221945_2224879_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_008209284.1\|2224918_2225554_+	hypothetical protein	NA	NA	NA	NA
WP_008209286.1\|2225634_2226042_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_153021737.1\|2226107_2226701_+	hypothetical protein	NA	NA	NA	NA
WP_015447712.1\|2226812_2227034_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_015447711.1\|2227250_2227535_+	DUF2282 domain-containing protein	NA	NA	NA	NA
WP_015447710.1\|2227546_2228419_+	DUF692 domain-containing protein	NA	NA	NA	NA
WP_015447709.1\|2228393_2229143_+	putative DNA-binding domain-containing protein	NA	NA	NA	NA
WP_015447708.1\|2229228_2229591_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_015447707.1\|2229610_2229889_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_015447706.1\|2229908_2230316_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_015447910.1\|2230615_2232340_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.4e-39	30.4
WP_008214502.1\|2232356_2232722_+	mercuric resistance transcriptional repressor protein MerD	NA	NA	NA	NA
WP_008214504.1\|2232718_2232937_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_008214506.1\|2233024_2233402_+	group III truncated hemoglobin	NA	NA	NA	NA
WP_041677010.1\|2233436_2234768_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	4.0e-39	26.0
WP_015447702.1\|2236006_2237143_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015447701.1\|2237252_2238191_+	DNA-binding protein	NA	NA	NA	NA
WP_157769711.1\|2239397_2240504_+	DNA-binding protein	NA	NA	NA	NA
WP_015447913.1\|2240547_2240688_-	hypothetical protein	NA	NA	NA	NA
WP_015447914.1\|2240684_2241848_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2243020:2243051	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2958576 : 2995381

Pseudomonas_phage(63.33%)

protease,head,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015448355.1\|2958576_2958933_+	helix-turn-helix domain-containing protein	M1PVU4	Vibrio_phage	1.2e-11	57.8
WP_157769751.1\|2959025_2959310_+	hypothetical protein	NA	NA	NA	NA
WP_041676786.1\|2959345_2959759_+	hypothetical protein	I6P8D5	Pseudomonas_phage	1.0e-25	47.7
WP_015448358.1\|2959758_2961711_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A1B0T6H2	Thiobacimonas_phage	4.0e-112	39.4
WP_015448359.1\|2961784_2962750_+	AAA family ATPase	A0A2P9JZG8	Alteromonadaceae_phage	2.5e-59	43.1
WP_157769752.1\|2962746_2963043_+	hypothetical protein	NA	NA	NA	NA
WP_015448361.1\|2963053_2963437_+	hypothetical protein	NA	NA	NA	NA
WP_041676788.1\|2963429_2963708_+	hypothetical protein	NA	NA	NA	NA
WP_015448363.1\|2963707_2964418_+	hypothetical protein	NA	NA	NA	NA
WP_015448364.1\|2964414_2965032_+	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	2.4e-63	61.0
WP_041676789.1\|2965033_2965477_+	hypothetical protein	NA	NA	NA	NA
WP_015448365.1\|2965473_2965896_+	hypothetical protein	A0A286N3D2	Arthrobacter_phage	1.9e-14	42.1
WP_157769753.1\|2965921_2966212_+	hypothetical protein	A0A0F6SJ59	Sinorhizobium_phage	2.6e-15	75.6
WP_015448368.1\|2966208_2966418_+	hypothetical protein	NA	NA	NA	NA
WP_015448369.1\|2966414_2966807_+	hypothetical protein	A0A0M4U437	Ralstonia_phage	4.0e-11	32.3
WP_015448370.1\|2966806_2967013_+	hypothetical protein	NA	NA	NA	NA
WP_015448371.1\|2966996_2967452_+	regulatory protein GemA	A0A0M3LP80	Mannheimia_phage	6.2e-08	30.8
WP_015448372.1\|2967453_2967696_+	hypothetical protein	NA	NA	NA	NA
WP_015448373.1\|2967695_2967956_+	hypothetical protein	NA	NA	NA	NA
WP_015448374.1\|2967948_2968218_+	hypothetical protein	NA	NA	NA	NA
WP_015448375.1\|2968217_2968808_+	hypothetical protein	J9RWB3	Pseudomonas_phage	2.1e-32	50.3
WP_015448376.1\|2968804_2969218_+	hypothetical protein	NA	NA	NA	NA
WP_015448377.1\|2969349_2969673_+	hypothetical protein	NA	NA	NA	NA
WP_015448378.1\|2969669_2969864_+	hypothetical protein	NA	NA	NA	NA
WP_015448379.1\|2969860_2970613_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-38	48.6
WP_015448380.1\|2970609_2971053_+	hypothetical protein	NA	NA	NA	NA
WP_051061184.1\|2971060_2971267_+	hypothetical protein	NA	NA	NA	NA
WP_015448381.1\|2971263_2971479_+	hypothetical protein	NA	NA	NA	NA
WP_015448382.1\|2971475_2971718_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_015448383.1\|2971714_2972008_+	DUF2730 domain-containing protein	NA	NA	NA	NA
WP_015448384.1\|2972004_2972313_+	hypothetical protein	A0A1B0T6F4	Thiobacimonas_phage	4.8e-12	38.8
WP_015448385.1\|2972315_2972867_+	DUF3486 family protein	J9SH37	Pseudomonas_phage	4.6e-29	51.4
WP_015448386.1\|2972863_2974468_+	hypothetical protein	A4JWJ4	Burkholderia_virus	7.5e-157	58.7
WP_015448387.1\|2974461_2976090_+	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	2.8e-175	59.7
WP_015448389.1\|2976213_2977479_+\|head	phage head morphogenesis protein, SPP1 gp7	J9STS2	Pseudomonas_phage	2.1e-82	59.8
WP_015448390.1\|2977478_2977958_+	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	2.3e-08	28.0
WP_015448391.1\|2978185_2979268_+\|protease	phage protease	J9SH47	Pseudomonas_phage	2.7e-94	55.9
WP_015448392.1\|2979337_2979742_+	hypothetical protein	J9RWG0	Pseudomonas_phage	1.4e-30	58.3
WP_015448393.1\|2979839_2980736_+\|head	Mu-like prophage major head subunit gpT family protein	J9SVY7	Pseudomonas_phage	2.8e-84	50.2
WP_015448394.1\|2980816_2981182_+	hypothetical protein	NA	NA	NA	NA
WP_015448395.1\|2981305_2981566_+	hypothetical protein	NA	NA	NA	NA
WP_015448396.1\|2981568_2982081_+	DUF1320 domain-containing protein	J9SNI4	Pseudomonas_phage	1.7e-38	52.1
WP_051061203.1\|2982098_2982545_+	hypothetical protein	J9SH57	Pseudomonas_phage	7.4e-22	41.8
WP_157769754.1\|2982541_2982709_+	hypothetical protein	NA	NA	NA	NA
WP_015448399.1\|2982712_2983471_+	hypothetical protein	Q5ZQX2	Pseudomonas_phage	1.5e-51	45.7
WP_015448400.1\|2983473_2984007_+	hypothetical protein	Q5ZQX1	Pseudomonas_phage	1.4e-22	39.1
WP_015448402.1\|2984132_2984399_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_015448403.1\|2984437_2987290_+\|tail	phage tail length tape measure family protein	J9SH65	Pseudomonas_phage	2.8e-45	46.8
WP_015448404.1\|2987291_2988146_+	hypothetical protein	H6WU10	Pseudomonas_phage	4.4e-55	40.0
WP_015448405.1\|2988145_2989042_+	hypothetical protein	A0A0M3MXF1	Stenotrophomonas_phage	2.8e-36	35.1
WP_157769755.1\|2989051_2990752_+	hypothetical protein	B7SDV7	Pseudomonas_virus	3.7e-114	43.6
WP_015448407.1\|2990748_2991540_+	phage BR0599 family protein	I6XM63	Pseudomonas_phage	3.0e-50	40.6
WP_015448408.1\|2991549_2991792_+	hypothetical protein	NA	NA	NA	NA
WP_015448409.1\|2991791_2992022_+	hypothetical protein	NA	NA	NA	NA
WP_015448410.1\|2992014_2994216_+	hypothetical protein	Q5ZQV9	Pseudomonas_phage	1.3e-138	41.0
WP_015448411.1\|2994218_2995055_+	hypothetical protein	NA	NA	NA	NA
WP_085999895.1\|2995087_2995381_+\|tail	phage tail protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_020541

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection