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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_016604 Mycolicibacterium rhodesiae NBB3, complete sequence 6 crisprs WYL,csa3,DEDDh,cas3,csf3gr5,csf2gr7,csf4gr11,csf1gr8,DinG,c2c9_V-U4,cas4 1 3 3 0

Results visualization

1. NC_016604
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016604_1 952639-952736 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016604_2 1094372-1094499 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016604_3 1427123-1427223 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016604_4 3495966-3496042 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016604_5 4690674-4690762 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016604_6 6218735-6218818 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_016604_3 3.1|1427146|16|NC_016604|CRISPRCasFinder 1427146-1427161 16 NC_016604.1 2808618-2808633 0 1.0

1. spacer 3.1|1427146|16|NC_016604|CRISPRCasFinder matches to position: 2808618-2808633, mismatch: 0, identity: 1.0

ggtcgtggtcggcgac	CRISPR spacer
ggtcgtggtcggcgac	Protospacer
****************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 1094186-1094210 2 0.92
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 319751-319775 2 0.92
NC_016604_2 2.1|1094398|25|NC_016604|CRISPRCasFinder 1094398-1094422 25 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 1182978-1183002 3 0.88
NC_016604_2 2.2|1094449|25|NC_016604|CRISPRCasFinder 1094449-1094473 25 NC_015163 Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence 86322-86346 3 0.88
NC_016604_2 2.2|1094449|25|NC_016604|CRISPRCasFinder 1094449-1094473 25 NC_015163 Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence 11501-11525 3 0.88
NC_016604_2 2.2|1094449|25|NC_016604|CRISPRCasFinder 1094449-1094473 25 NC_015163 Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence 36357-36381 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP026745 Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence 54275-54299 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP031818 Klebsiella pneumoniae strain INF235-sc-2280127 plasmid unnamed1, complete sequence 114924-114948 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP021958 Klebsiella pneumoniae strain AR_0139 plasmid tig00000002_u 56650-56674 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP017451 Klebsiella sp. LTGPAF-6F plasmid unnamed1, complete sequence 58663-58687 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP046573 Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence 96906-96930 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP026049 Raoultella planticola strain FDAARGOS_64 plasmid unnamed2, complete sequence 164285-164309 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP037442 Klebsiella sp. PO552 plasmid p1, complete sequence 111262-111286 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP023417 Klebsiella pneumoniae strain 1050 plasmid pKp1050-1, complete sequence 191269-191293 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP026276 Klebsiella oxytoca strain KONIH5 plasmid pKOR-ab4d, complete sequence 74047-74071 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP026186 Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence 308240-308264 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP028549 Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence 122505-122529 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP009865 Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29 plasmid pKPN-80a, complete sequence 3362-3386 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP008842 Klebsiella michiganensis strain M1 plasmid pKOXM1A, complete sequence 13912-13936 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP042546 Klebsiella michiganensis strain C52 plasmid pC52_001, complete sequence 108326-108350 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP024507 Klebsiella pneumoniae strain KSB2_1B plasmid unnamed1, complete sequence 110679-110703 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP029357 Azospirillum sp. CFH 70021 plasmid unnamed2 575735-575759 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP033429 Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence 83672-83696 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP013052 Sinorhizobium americanum CCGM7 plasmid A, complete sequence 154299-154323 3 0.88
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NC_009660 Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD02, complete sequence 8676-8700 3 0.88
NC_016604_2 2.1|1094398|25|NC_016604|CRISPRCasFinder 1094398-1094422 25 NZ_CP013635 Rhizobium sp. N324 plasmid pRspN324e, complete sequence 27625-27649 4 0.84
NC_016604_2 2.1|1094398|25|NC_016604|CRISPRCasFinder 1094398-1094422 25 KC292027 Halovirus HCTV-5, complete genome 44985-45009 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 MT723941 Gordonia phage YorkOnyx, complete genome 12868-12892 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 795267-795291 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 402597-402621 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP007797 Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence 535449-535473 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP007797 Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence 560192-560216 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4000262-4000286 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP029830 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence 33773-33797 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 1086761-1086785 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 126501-126525 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP011665 Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence 364963-364987 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP029357 Azospirillum sp. CFH 70021 plasmid unnamed2 644508-644532 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP032343 Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence 348507-348531 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NC_017957 Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence 81808-81832 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP041045 Paracoccus sp. AK26 plasmid pAK1, complete sequence 359230-359254 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP024891 Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence 12678-12702 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP024891 Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence 43997-44021 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP020040 Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence 216042-216066 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 456019-456043 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 726317-726341 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP017563 Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence 947081-947105 4 0.84
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NZ_CP012917 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence 379695-379719 4 0.84
NC_016604_2 2.2|1094449|25|NC_016604|CRISPRCasFinder 1094449-1094473 25 MF150911 Ralstonia phage DU_RP_II, complete genome 7107-7131 5 0.8
NC_016604_2 2.2|1094449|25|NC_016604|CRISPRCasFinder 1094449-1094473 25 MN996301 Ralstonia phage RpY1, complete genome 23574-23598 5 0.8
NC_016604_4 4.1|3495992|25|NC_016604|CRISPRCasFinder 3495992-3496016 25 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 970043-970067 5 0.8

1. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 2, identity: 0.92

gcccgcggccggcggcggtggggtc	CRISPR spacer
gcccgcgaccggcggcggtgggggc	Protospacer
*******.*************** *

2. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.92

gcccgcggccggcggcggtggggtc	CRISPR spacer
gcccgccgccggcggcgatggggtc	Protospacer
****** **********.*******

3. spacer 2.1|1094398|25|NC_016604|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 3, identity: 0.88

tcgatccccggtggtcccacgggca	CRISPR spacer
gcgatccccggtgttgccacgggca	Protospacer
 ************ * *********

4. spacer 2.2|1094449|25|NC_016604|CRISPRCasFinder matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 3, identity: 0.88

ggcattccgggcggcccgtcaggag	CRISPR spacer
cgcattccaggcggcctgtcaggag	Protospacer
 *******.*******.********

5. spacer 2.2|1094449|25|NC_016604|CRISPRCasFinder matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 3, identity: 0.88

ggcattccgggcggcccgtcaggag	CRISPR spacer
cgcattccaggcggcctgtcaggag	Protospacer
 *******.*******.********

6. spacer 2.2|1094449|25|NC_016604|CRISPRCasFinder matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 3, identity: 0.88

ggcattccgggcggcccgtcaggag	CRISPR spacer
cgcattccaggcggcctgtcaggag	Protospacer
 *******.*******.********

7. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP026745 (Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gcccgcggccggcggcggtggtgaa	Protospacer
********************* *  

8. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP031818 (Klebsiella pneumoniae strain INF235-sc-2280127 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

9. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP021958 (Klebsiella pneumoniae strain AR_0139 plasmid tig00000002_u) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

10. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP017451 (Klebsiella sp. LTGPAF-6F plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

11. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
ccccgcggccggcggcggtgaggac	Protospacer
 *******************.** *

12. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP026049 (Raoultella planticola strain FDAARGOS_64 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

13. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP037442 (Klebsiella sp. PO552 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

14. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP023417 (Klebsiella pneumoniae strain 1050 plasmid pKp1050-1, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

15. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP026276 (Klebsiella oxytoca strain KONIH5 plasmid pKOR-ab4d, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

16. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP026186 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

17. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP028549 (Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

18. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP009865 (Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29 plasmid pKPN-80a, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

19. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP008842 (Klebsiella michiganensis strain M1 plasmid pKOXM1A, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

20. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP042546 (Klebsiella michiganensis strain C52 plasmid pC52_001, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

21. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP024507 (Klebsiella pneumoniae strain KSB2_1B plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gatcgcggccggcggcggtgggatc	Protospacer
* .*******************.**

22. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gccggcggccggcggcggagggggc	Protospacer
*** ************** **** *

23. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP033429 (Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gccagcggccggcggaggtggggac	Protospacer
*** *********** ******* *

24. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP013052 (Sinorhizobium americanum CCGM7 plasmid A, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
ggccgaggccggcggcggtgaggtc	Protospacer
* *** **************.****

25. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NC_009660 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD02, complete sequence) position: , mismatch: 3, identity: 0.88

gcccgcggccggcggcggtggggtc	CRISPR spacer
gccggcggccggcggcggtgcggcc	Protospacer
*** **************** **.*

26. spacer 2.1|1094398|25|NC_016604|CRISPRCasFinder matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 4, identity: 0.84

tcgatccccggtggtcccacgggca	CRISPR spacer
ccgatccccgttggttccacgggcc	Protospacer
.********* ****.******** 

27. spacer 2.1|1094398|25|NC_016604|CRISPRCasFinder matches to KC292027 (Halovirus HCTV-5, complete genome) position: , mismatch: 4, identity: 0.84

tcgatccccggtggtcccacgggca	CRISPR spacer
cctgtccccggtggtcccacgagca	Protospacer
.* .*****************.***

28. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to MT723941 (Gordonia phage YorkOnyx, complete genome) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
cggcgcggccggcggcggcggggtc	Protospacer
   ***************.******

29. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gccggcggccggcggcggtgaggcg	Protospacer
*** ****************.**. 

30. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gcgcgcggccggcggcggtgaggcg	Protospacer
** *****************.**. 

31. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gcccgcggccggtggccgtggggaa	Protospacer
************.*** ******  

32. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
cgccgcggcgggcggcggtgcggtc	Protospacer
  ******* ********** ****

33. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gcccgcgggcggaggcggtggggga	Protospacer
******** *** **********  

34. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
ccgcgcggccggcggcggaggggta	Protospacer
 * *************** ***** 

35. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gctcgcggccgggggcggtgggggt	Protospacer
**.********* ********** .

36. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
cgccgcggccggcggcggtggcctc	Protospacer
  *******************  **

37. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
ctccgcggtcggcggcggtggcgtc	Protospacer
 .******.************ ***

38. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
ggccgcggccggtggcggtggggaa	Protospacer
* **********.**********  

39. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gcccgcggccggtggccgtggggaa	Protospacer
************.*** ******  

40. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gggcgcggccggcggcggtggcgtt	Protospacer
*  ****************** **.

41. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
acccgcggccggcggcgaaggggtt	Protospacer
.****************. *****.

42. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
cgccgcggccggcggcggtgagatc	Protospacer
  ******************.*.**

43. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
cgccgcggccggcggcggtgagatc	Protospacer
  ******************.*.**

44. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gtttgcggccggcgtcggtggggtc	Protospacer
*...********** **********

45. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gcccgcggccggtggccgtggggaa	Protospacer
************.*** ******  

46. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gctcgcggccgggggcggtgggggt	Protospacer
**.********* ********** .

47. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
ttccgcgaccggctgcggtggggtc	Protospacer
 .*****.***** ***********

48. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 4, identity: 0.84

gcccgcggccggcggcggtggggtc	CRISPR spacer
gcccgcggccggtggccgtggggaa	Protospacer
************.*** ******  

49. spacer 2.2|1094449|25|NC_016604|CRISPRCasFinder matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 5, identity: 0.8

ggcattccgggcggcccgtcaggag	CRISPR spacer
cgcattccgggcggcccgtcgtacg	Protospacer
 *******************. . *

50. spacer 2.2|1094449|25|NC_016604|CRISPRCasFinder matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 5, identity: 0.8

ggcattccgggcggcccgtcaggag	CRISPR spacer
cgcattccgggcggcccgtcgtacg	Protospacer
 *******************. . *

51. spacer 4.1|3495992|25|NC_016604|CRISPRCasFinder matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.8

gcccgcggccggcggcggtggggtc	CRISPR spacer
cagcgcggccggcggcggtggggct	Protospacer
   ********************..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2169470 : 2238905 60 Tupanvirus(18.75%) tRNA,protease,holin NA
DBSCAN-SWA_2 2890124 : 2978070 67 Virus_Rctr41k(21.43%) integrase,transposase attL 2916610:2916669|attR 2976933:2978204
DBSCAN-SWA_3 3019566 : 3133110 94 Staphylococcus_phage(22.22%) integrase,transposase attL 3044472:3044488|attR 3139670:3139686
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage