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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_021172 Hyphomicrobium denitrificans 1NES1, complete sequence 1 crisprs csa3,cas3,RT,WYL,DEDDh 0 1 2 0

Results visualization

1. NC_021172
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021172_1 2605605-2605723 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 MN693302 Marine virus AFVG_25M270, complete genome 4143-4167 2 0.92
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP048640 Rhizobium oryzihabitans strain M15 plasmid p8, complete sequence 36579-36603 3 0.88
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP014290 Bacillus thuringiensis strain Bt185 plasmid pBT1850007, complete sequence 6303-6327 3 0.88
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_KT290268 Enterococcus faecalis strain CK135 plasmid pPD1, complete sequence 47289-47313 4 0.84
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP032530 Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence 116560-116584 4 0.84
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 MN692968 Marine virus AFVG_117M26, complete genome 4047-4071 4 0.84
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 MN692946 Marine virus AFVG_117M27, complete genome 3372-3396 4 0.84
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 MN694368 Marine virus AFVG_250M429, complete genome 3372-3396 4 0.84
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 MN855735 Bacteriophage sp. isolate 111, complete genome 24815-24839 4 0.84
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 KU886270 Freshwater phage uvFW-CGR-AMD-COM-C429, complete genome 34176-34200 4 0.84
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 MN694254 Marine virus AFVG_250M1006, complete genome 4080-4104 4 0.84
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NC_031020 Morganella phage vB_MmoM_MP1, complete genome 157541-157565 5 0.8
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 KY593455 Yersinia phage fHe-Yen9-01, complete genome 134720-134744 5 0.8
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NC_019909 Yersinia phage phiR1-RT complete genome 132799-132823 5 0.8
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 MN234211 Arthrobacter phage Mimi, complete genome 40745-40769 5 0.8
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NC_011973 Bacillus cereus Q1 plasmid pBc239, complete sequence 124442-124466 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP010578 Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence 168559-168583 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP010579 Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence 8757-8781 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP010579 Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence 84169-84193 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP020005 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence 401712-401736 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP015177 Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence 150994-151018 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP045534 Bacillaceae bacterium C02 plasmid unnamed1, complete sequence 120774-120798 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP053930 Bacillus cereus strain FDAARGOS_797 plasmid unnamed1, complete sequence 67174-67198 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP053953 Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence 203978-204002 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP014853 Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence 283643-283667 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP040345 Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence 169617-169641 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP009299 Bacillus cereus D17 plasmid unnamed, complete sequence 110229-110253 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP009317 Bacillus cereus 03BB102 plasmid unnamed, complete sequence 132093-132117 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NC_018492 Bacillus cereus FRI-35 plasmid p01, complete sequence 170124-170148 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NC_012473 Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence 4806-4830 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NC_018501 Bacillus thuringiensis HD-771 plasmid p02, complete sequence 36727-36751 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP033789 Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence 184310-184334 6 0.76
NC_021172_1 1.2|2605676|25|NC_021172|CRISPRCasFinder 2605676-2605700 25 NZ_CP053950 Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence 98225-98249 6 0.76

1. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to MN693302 (Marine virus AFVG_25M270, complete genome) position: , mismatch: 2, identity: 0.92

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttagcttcttcttcagct	Protospacer
*********.***********.***

2. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP048640 (Rhizobium oryzihabitans strain M15 plasmid p8, complete sequence) position: , mismatch: 3, identity: 0.88

ttttttcttggcttcttcttcggct	CRISPR spacer
gtttttcttggcttcttcatcgggt	Protospacer
 ***************** **** *

3. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP014290 (Bacillus thuringiensis strain Bt185 plasmid pBT1850007, complete sequence) position: , mismatch: 3, identity: 0.88

ttttttcttggcttcttcttcggct	CRISPR spacer
tattttcttggctacttcttcagct	Protospacer
* *********** *******.***

4. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_KT290268 (Enterococcus faecalis strain CK135 plasmid pPD1, complete sequence) position: , mismatch: 4, identity: 0.84

ttttttcttggcttcttcttcggct	CRISPR spacer
tttttccttggcttcttcttcctca	Protospacer
*****.***************  * 

5. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP032530 (Bacillus megaterium NCT-2 plasmid pNCT2_2, complete sequence) position: , mismatch: 4, identity: 0.84

ttttttcttggcttcttcttcggct	CRISPR spacer
atttttcttggcttcttcttttact	Protospacer
 *******************. .**

6. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to MN692968 (Marine virus AFVG_117M26, complete genome) position: , mismatch: 4, identity: 0.84

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcgtggcttcttcttcagaa	Protospacer
******* *************.*  

7. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to MN692946 (Marine virus AFVG_117M27, complete genome) position: , mismatch: 4, identity: 0.84

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcgtggcttcttcttcagaa	Protospacer
******* *************.*  

8. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to MN694368 (Marine virus AFVG_250M429, complete genome) position: , mismatch: 4, identity: 0.84

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcgtggcttcttcttcagaa	Protospacer
******* *************.*  

9. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to MN855735 (Bacteriophage sp. isolate 111, complete genome) position: , mismatch: 4, identity: 0.84

ttttttcttggcttcttcttcggct	CRISPR spacer
atttttcttggcttcttcatcgtca	Protospacer
 ***************** *** * 

10. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to KU886270 (Freshwater phage uvFW-CGR-AMD-COM-C429, complete genome) position: , mismatch: 4, identity: 0.84

ttttttcttggcttcttcttcggct	CRISPR spacer
ggttttcttggcttcttttttggct	Protospacer
  ***************.**.****

11. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to MN694254 (Marine virus AFVG_250M1006, complete genome) position: , mismatch: 4, identity: 0.84

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcgtggcttcttcttcagaa	Protospacer
******* *************.*  

12. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NC_031020 (Morganella phage vB_MmoM_MP1, complete genome) position: , mismatch: 5, identity: 0.8

ttttttcttggcttcttcttcggct	CRISPR spacer
aattttattggcttcttcttcggtg	Protospacer
  **** ****************. 

13. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to KY593455 (Yersinia phage fHe-Yen9-01, complete genome) position: , mismatch: 5, identity: 0.8

ttttttcttggcttcttcttcggct	CRISPR spacer
aagattattggcttcttcttcggct	Protospacer
    ** ******************

14. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NC_019909 (Yersinia phage phiR1-RT complete genome) position: , mismatch: 5, identity: 0.8

ttttttcttggcttcttcttcggct	CRISPR spacer
aagattgttggcttcttcttcggct	Protospacer
    ** ******************

15. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to MN234211 (Arthrobacter phage Mimi, complete genome) position: , mismatch: 5, identity: 0.8

ttttttcttggcttcttcttcggct	CRISPR spacer
gatgctcttggcttcttcttcggcg	Protospacer
  * .******************* 

16. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

17. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

18. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP010579 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

19. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP010579 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB92, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

20. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

21. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

22. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP045534 (Bacillaceae bacterium C02 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

23. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP053930 (Bacillus cereus strain FDAARGOS_797 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

24. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

25. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP014853 (Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

26. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaaa	Protospacer
******************* . .  

27. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP009299 (Bacillus cereus D17 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

28. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP009317 (Bacillus cereus 03BB102 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

29. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NC_018492 (Bacillus cereus FRI-35 plasmid p01, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

30. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NC_012473 (Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

31. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NC_018501 (Bacillus thuringiensis HD-771 plasmid p02, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctaataaa	Protospacer
*******************   .  

32. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP033789 (Bacillus sp. FDAARGOS_527 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

33. spacer 1.2|2605676|25|NC_021172|CRISPRCasFinder matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.76

ttttttcttggcttcttcttcggct	CRISPR spacer
ttttttcttggcttcttctattaga	Protospacer
******************* . .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1334050 : 1341752 9 uncultured_Mediterranean_phage(85.71%) tRNA NA
DBSCAN-SWA_2 1886170 : 1899915 15 Rhodobacter_phage(37.5%) transposase,head,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage