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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017551 Leptospira interrogans serovar Lai str. IPAV chromosome 1, complete sequence 15 crisprs Cas9_archaeal,cas1,cas4,cas7,cas8c,cas5,csa3,DinG,cas3,WYL,cas6,cas2,cas8b3 3 15 2 0
NC_017552 Leptospira interrogans serovar Lai str. IPAV chromosome 2, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NC_017551
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_1 1346214-1346656 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_2 1683300-1683395 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_3 2269606-2269696 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_4 2414652-2414751 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_5 2676135-2676228 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_6 3143123-3143218 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_9 3161489-3161590 Unclear I-A,I-B,II-B
1 spacers
cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_7 3160604-3160853 Unclear I-A,I-B,II-B
3 spacers
cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_8 3161011-3161331 Unclear I-A,I-B,II-B
4 spacers
cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_12 3162738-3162838 Unclear I-A,I-B,II-B
1 spacers
cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_13 3163002-3163172 Unclear I-A,I-B,II-B
2 spacers
cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_10 3161825-3162077 Unclear I-A,I-B,II-B
3 spacers
cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_11 3162190-3162512 Unclear I-A,I-B,II-B
4 spacers
cas2,cas1,cas6,cas3,cas8b3,cas7,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_14 3485652-3485776 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017551_15 4070025-4070120 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017551_5 5.1|2676158|48|NC_017551|CRISPRCasFinder 2676158-2676205 48 NC_017551.1 2709335-2709382 0 1.0
NC_017551_5 5.1|2676158|48|NC_017551|CRISPRCasFinder 2676158-2676205 48 NC_017551.1 2709406-2709453 0 1.0
NC_017551_6 6.1|3143148|46|NC_017551|CRISPRCasFinder 3143148-3143193 46 NC_017551.1 2709337-2709382 0 1.0
NC_017551_6 6.1|3143148|46|NC_017551|CRISPRCasFinder 3143148-3143193 46 NC_017551.1 2709408-2709453 0 1.0
NC_017551_15 15.1|4070050|46|NC_017551|CRISPRCasFinder 4070050-4070095 46 NC_017551.1 2709337-2709382 0 1.0
NC_017551_15 15.1|4070050|46|NC_017551|CRISPRCasFinder 4070050-4070095 46 NC_017551.1 2709408-2709453 0 1.0

1. spacer 5.1|2676158|48|NC_017551|CRISPRCasFinder matches to position: 2709335-2709382, mismatch: 0, identity: 1.0

caaactcaatgcatcgctccctaagggtcgctctgcaggtcgcgttgg	CRISPR spacer
caaactcaatgcatcgctccctaagggtcgctctgcaggtcgcgttgg	Protospacer
************************************************

2. spacer 5.1|2676158|48|NC_017551|CRISPRCasFinder matches to position: 2709406-2709453, mismatch: 0, identity: 1.0

caaactcaatgcatcgctccctaagggtcgctctgcaggtcgcgttgg	CRISPR spacer
caaactcaatgcatcgctccctaagggtcgctctgcaggtcgcgttgg	Protospacer
************************************************

3. spacer 6.1|3143148|46|NC_017551|CRISPRCasFinder matches to position: 2709337-2709382, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

4. spacer 6.1|3143148|46|NC_017551|CRISPRCasFinder matches to position: 2709408-2709453, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

5. spacer 15.1|4070050|46|NC_017551|CRISPRCasFinder matches to position: 2709337-2709382, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

6. spacer 15.1|4070050|46|NC_017551|CRISPRCasFinder matches to position: 2709408-2709453, mismatch: 0, identity: 1.0

aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	CRISPR spacer
aacgcgacctgcagagcgacccttagggagcgatgcattgagtttg	Protospacer
**********************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP039286 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence 65288-65319 0 1.0
NC_017551_7 7.3|3160641|34|NC_017551|CRT 3160641-3160674 34 NZ_CP039286 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence 65288-65321 0 1.0
NC_017551_8 8.2|3161118|35|NC_017551|CRT,PILER-CR 3161118-3161152 35 NZ_CP039286 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence 65287-65321 0 1.0
NC_017551_8 8.4|3161261|35|NC_017551|CRT 3161261-3161295 35 NZ_CP006725 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence 31227-31261 0 1.0
NC_017551_8 8.4|3161261|35|NC_017551|CRT 3161261-3161295 35 NZ_CP039285 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence 49049-49083 0 1.0
NC_017551_10 10.1|3161864|32|NC_017551|PILER-CR 3161864-3161895 32 NZ_CP040842 Leptospira weilii strain CUDO6 plasmid pDO6, complete sequence 80499-80530 0 1.0
NC_017551_10 10.1|3161864|32|NC_017551|PILER-CR 3161864-3161895 32 NZ_CP040845 Leptospira weilii strain CUD13 plasmid pD13, complete sequence 86750-86781 0 1.0
NC_017551_10 10.1|3161864|32|NC_017551|PILER-CR 3161864-3161895 32 KF114877 Leptospira phage LnoZ_CZ214, complete genome 72965-72996 0 1.0
NC_017551_10 10.2|3161935|33|NC_017551|PILER-CR 3161935-3161967 33 NZ_CP006727 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence 35635-35667 0 1.0
NC_017551_10 10.6|3161863|35|NC_017551|CRT 3161863-3161897 35 NZ_CP040842 Leptospira weilii strain CUDO6 plasmid pDO6, complete sequence 80497-80531 0 1.0
NC_017551_10 10.6|3161863|35|NC_017551|CRT 3161863-3161897 35 NZ_CP040845 Leptospira weilii strain CUD13 plasmid pD13, complete sequence 86748-86782 0 1.0
NC_017551_10 10.6|3161863|35|NC_017551|CRT 3161863-3161897 35 KF114877 Leptospira phage LnoZ_CZ214, complete genome 72964-72998 0 1.0
NC_017551_10 10.7|3161934|36|NC_017551|CRT 3161934-3161969 36 NZ_CP006727 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence 35633-35668 0 1.0
NC_017551_8 8.1|3161047|35|NC_017551|CRT 3161047-3161081 35 NZ_CP039285 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence 43641-43675 5 0.857
NC_017551_8 8.1|3161047|35|NC_017551|CRT 3161047-3161081 35 NZ_CP006725 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence 36638-36672 5 0.857
NC_017551_8 8.7|3161253|43|NC_017551|CRISPRCasFinder 3161253-3161295 43 NZ_CP006725 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence 31219-31261 5 0.884
NC_017551_8 8.7|3161253|43|NC_017551|CRISPRCasFinder 3161253-3161295 43 NZ_CP039285 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence 49049-49091 5 0.884
NC_017551_10 10.3|3161855|43|NC_017551|CRISPRCasFinder 3161855-3161897 43 KF114877 Leptospira phage LnoZ_CZ214, complete genome 72956-72998 5 0.884
NC_017551_10 10.4|3161926|44|NC_017551|CRISPRCasFinder 3161926-3161969 44 NZ_CP006727 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence 35633-35676 5 0.886
NC_017551_13 13.2|3163102|43|NC_017551|CRISPRCasFinder 3163102-3163144 43 NZ_CP039285 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence 112456-112498 5 0.884
NC_017551_13 13.2|3163102|43|NC_017551|CRISPRCasFinder 3163102-3163144 43 NZ_CP044515 Leptospira interrogans serovar Canicola strain 611 plasmid p1, complete sequence 53965-54007 5 0.884
NC_017551_13 13.2|3163102|43|NC_017551|CRISPRCasFinder 3163102-3163144 43 NC_025136 Leptospira interrogans serovar Canicola strain Gui44 plasmid pGui1, complete sequence 53020-53062 5 0.884
NC_017551_13 13.2|3163102|43|NC_017551|CRISPRCasFinder 3163102-3163144 43 NZ_CP044511 Leptospira interrogans serovar Canicola strain LJ178 plasmid p1, complete sequence 53892-53934 5 0.884
NC_017551_13 13.2|3163102|43|NC_017551|CRISPRCasFinder 3163102-3163144 43 NZ_CP006725 Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence 2529-2571 5 0.884
NC_017551_7 7.6|3160633|43|NC_017551|CRISPRCasFinder 3160633-3160675 43 NZ_CP039286 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence 65287-65329 6 0.86
NC_017551_8 8.5|3161110|43|NC_017551|CRISPRCasFinder 3161110-3161152 43 NZ_CP039286 Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence 65287-65329 6 0.86
NC_017551_10 10.3|3161855|43|NC_017551|CRISPRCasFinder 3161855-3161897 43 NZ_CP040842 Leptospira weilii strain CUDO6 plasmid pDO6, complete sequence 80497-80539 6 0.86
NC_017551_10 10.3|3161855|43|NC_017551|CRISPRCasFinder 3161855-3161897 43 NZ_CP040845 Leptospira weilii strain CUD13 plasmid pD13, complete sequence 86748-86790 6 0.86
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 MH884508 Bacillus phage vB_BcoS-136, complete genome 152113-152144 7 0.781
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP045289 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence 818-849 7 0.781
NC_017551_10 10.1|3161864|32|NC_017551|PILER-CR 3161864-3161895 32 NC_010478 Synechococcus sp. PCC 7002 plasmid pAQ4, complete sequence 21064-21095 7 0.781
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP049031 Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence 5839-5870 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 KT997873 Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome 4333-4364 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 385746-385777 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP039706 Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence 290213-290244 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP033246 Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence 875651-875682 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP033248 Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence 875666-875697 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 CP027480 Pseudomonas koreensis strain P19E3 plasmid p3, complete sequence 204918-204949 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP013238 Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence 503401-503432 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_AP019717 Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence 325243-325274 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 AP014201 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C75-MedDCM-OCT-S25-C132, *** SEQUENCING IN PROGRESS *** 2093-2124 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 AP014202 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C75-MedDCM-OCT-S34-C124, *** SEQUENCING IN PROGRESS *** 13864-13895 8 0.75
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP045289 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence 428-459 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP045289 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence 13163-13194 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 MW084976 Bacillus phage Kirov, complete genome 164209-164240 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP023350 Escherichia coli strain ETEC-2264 plasmid unnamed1, complete sequence 65593-65624 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP022446 Bacillus cereus C1L plasmid pC1L1, complete sequence 47139-47170 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP024241 Escherichia coli O114:H49 strain 90-9280 plasmid unnamed1 63946-63977 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 NZ_CP024238 Escherichia coli O15:H11 strain 90-9272 plasmid unnamed 252060-252091 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 MN693454 Marine virus AFVG_25M276, complete genome 1344-1375 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 AP013581 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S23-C56, *** SEQUENCING IN PROGRESS *** 13486-13517 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 MN693568 Marine virus AFVG_25M275, complete genome 28428-28459 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 MH319749 Marine virus AG-345-F15 Ga0172271_11 genomic sequence 75208-75239 9 0.719
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 AP013457 Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C20 9239-9270 9 0.719
NC_017551_7 7.3|3160641|34|NC_017551|CRT 3160641-3160674 34 MH884508 Bacillus phage vB_BcoS-136, complete genome 152111-152144 9 0.735
NC_017551_7 7.3|3160641|34|NC_017551|CRT 3160641-3160674 34 NZ_CP049031 Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence 5839-5872 9 0.735
NC_017551_8 8.2|3161118|35|NC_017551|CRT,PILER-CR 3161118-3161152 35 MH884508 Bacillus phage vB_BcoS-136, complete genome 152111-152145 9 0.743
NC_017551_7 7.1|3160643|32|NC_017551|PILER-CR 3160643-3160674 32 MN698241 Pelagibacter phage HTVC027P, complete genome 31106-31137 10 0.688
NC_017551_7 7.3|3160641|34|NC_017551|CRT 3160641-3160674 34 KT997873 Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome 4333-4366 10 0.706
NC_017551_8 8.2|3161118|35|NC_017551|CRT,PILER-CR 3161118-3161152 35 NZ_CP049031 Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence 5838-5872 10 0.714
NC_017551_7 7.3|3160641|34|NC_017551|CRT 3160641-3160674 34 NZ_CP045289 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence 426-459 11 0.676
NC_017551_7 7.3|3160641|34|NC_017551|CRT 3160641-3160674 34 MW084976 Bacillus phage Kirov, complete genome 164209-164242 11 0.676
NC_017551_8 8.2|3161118|35|NC_017551|CRT,PILER-CR 3161118-3161152 35 KT997873 Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome 4332-4366 11 0.686
NC_017551_7 7.3|3160641|34|NC_017551|CRT 3160641-3160674 34 MN698241 Pelagibacter phage HTVC027P, complete genome 31106-31139 12 0.647

1. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP039286 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence) position: , mismatch: 0, identity: 1.0

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttctgattttttcttttccttccttttgtta	Protospacer
********************************

2. spacer 7.3|3160641|34|NC_017551|CRT matches to NZ_CP039286 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence) position: , mismatch: 0, identity: 1.0

ccgttctgattttttcttttccttccttttgtta	CRISPR spacer
ccgttctgattttttcttttccttccttttgtta	Protospacer
**********************************

3. spacer 8.2|3161118|35|NC_017551|CRT,PILER-CR matches to NZ_CP039286 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence) position: , mismatch: 0, identity: 1.0

ccgttctgattttttcttttccttccttttgttat	CRISPR spacer
ccgttctgattttttcttttccttccttttgttat	Protospacer
***********************************

4. spacer 8.4|3161261|35|NC_017551|CRT matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 0, identity: 1.0

gaatacaacctcttcaaaaaagaggaaccggcgta	CRISPR spacer
gaatacaacctcttcaaaaaagaggaaccggcgta	Protospacer
***********************************

5. spacer 8.4|3161261|35|NC_017551|CRT matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 0, identity: 1.0

gaatacaacctcttcaaaaaagaggaaccggcgta	CRISPR spacer
gaatacaacctcttcaaaaaagaggaaccggcgta	Protospacer
***********************************

6. spacer 10.1|3161864|32|NC_017551|PILER-CR matches to NZ_CP040842 (Leptospira weilii strain CUDO6 plasmid pDO6, complete sequence) position: , mismatch: 0, identity: 1.0

aagacaaatcggttcatttgattttttcggat	CRISPR spacer
aagacaaatcggttcatttgattttttcggat	Protospacer
********************************

7. spacer 10.1|3161864|32|NC_017551|PILER-CR matches to NZ_CP040845 (Leptospira weilii strain CUD13 plasmid pD13, complete sequence) position: , mismatch: 0, identity: 1.0

aagacaaatcggttcatttgattttttcggat	CRISPR spacer
aagacaaatcggttcatttgattttttcggat	Protospacer
********************************

8. spacer 10.1|3161864|32|NC_017551|PILER-CR matches to KF114877 (Leptospira phage LnoZ_CZ214, complete genome) position: , mismatch: 0, identity: 1.0

aagacaaatcggttcatttgattttttcggat	CRISPR spacer
aagacaaatcggttcatttgattttttcggat	Protospacer
********************************

9. spacer 10.2|3161935|33|NC_017551|PILER-CR matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 0, identity: 1.0

agttaaattctgcccactccatggcctaaaatc	CRISPR spacer
agttaaattctgcccactccatggcctaaaatc	Protospacer
*********************************

10. spacer 10.6|3161863|35|NC_017551|CRT matches to NZ_CP040842 (Leptospira weilii strain CUDO6 plasmid pDO6, complete sequence) position: , mismatch: 0, identity: 1.0

aaagacaaatcggttcatttgattttttcggatct	CRISPR spacer
aaagacaaatcggttcatttgattttttcggatct	Protospacer
***********************************

11. spacer 10.6|3161863|35|NC_017551|CRT matches to NZ_CP040845 (Leptospira weilii strain CUD13 plasmid pD13, complete sequence) position: , mismatch: 0, identity: 1.0

aaagacaaatcggttcatttgattttttcggatct	CRISPR spacer
aaagacaaatcggttcatttgattttttcggatct	Protospacer
***********************************

12. spacer 10.6|3161863|35|NC_017551|CRT matches to KF114877 (Leptospira phage LnoZ_CZ214, complete genome) position: , mismatch: 0, identity: 1.0

aaagacaaatcggttcatttgattttttcggatct	CRISPR spacer
aaagacaaatcggttcatttgattttttcggatct	Protospacer
***********************************

13. spacer 10.7|3161934|36|NC_017551|CRT matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 0, identity: 1.0

gagttaaattctgcccactccatggcctaaaatcag	CRISPR spacer
gagttaaattctgcccactccatggcctaaaatcag	Protospacer
************************************

14. spacer 8.1|3161047|35|NC_017551|CRT matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 5, identity: 0.857

ttgattggtgcagttgtgcttgttttgattggtgt	CRISPR spacer
ctcggtggtgcagttgtgcttgttttgattggcgt	Protospacer
.* . ***************************.**

15. spacer 8.1|3161047|35|NC_017551|CRT matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 5, identity: 0.857

ttgattggtgcagttgtgcttgttttgattggtgt	CRISPR spacer
ctcggtggtgcagttgtgcttgttttgattggcgt	Protospacer
.* . ***************************.**

16. spacer 8.7|3161253|43|NC_017551|CRISPRCasFinder matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 5, identity: 0.884

ttgagcacgaatacaacctcttcaaaaaagaggaaccggcgta	CRISPR spacer
gaacgctcgaatacaacctcttcaaaaaagaggaaccggcgta	Protospacer
  . ** ************************************

17. spacer 8.7|3161253|43|NC_017551|CRISPRCasFinder matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 5, identity: 0.884

ttgagca--cgaatacaacctcttcaaaaaagaggaaccggcgta	CRISPR spacer
--gaacgatggaatacaacctcttcaaaaaagaggaaccggcgta	Protospacer
  **.*.   ***********************************

18. spacer 10.3|3161855|43|NC_017551|CRISPRCasFinder matches to KF114877 (Leptospira phage LnoZ_CZ214, complete genome) position: , mismatch: 5, identity: 0.884

ttgagcacaaagacaaatcggttcatttgattttttcggatct	CRISPR spacer
ctaagataaaagacaaatcggttcatttgattttttcggatct	Protospacer
.*.**   ***********************************

19. spacer 10.4|3161926|44|NC_017551|CRISPRCasFinder matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 5, identity: 0.886

ttgagca--cgagttaaattctgcccactccatggcctaaaatcag	CRISPR spacer
--ggccaatggagttaaattctgcccactccatggcctaaaatcag	Protospacer
  *. **   ************************************

20. spacer 13.2|3163102|43|NC_017551|CRISPRCasFinder matches to NZ_CP039285 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL2, complete sequence) position: , mismatch: 5, identity: 0.884

----ttgagcactaagagtaagtggaggctagatttagagggattgt	CRISPR spacer
tgtcttta----taagagtaagtggaggctagatttagagggattgt	Protospacer
    ** *    ***********************************

21. spacer 13.2|3163102|43|NC_017551|CRISPRCasFinder matches to NZ_CP044515 (Leptospira interrogans serovar Canicola strain 611 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.884

-----ttgagcactaagagtaagtggaggctagatttagagggattgt	CRISPR spacer
tgtctttg-----taagagtaagtggaggctagatttagagggattgt	Protospacer
     ***     ***********************************

22. spacer 13.2|3163102|43|NC_017551|CRISPRCasFinder matches to NC_025136 (Leptospira interrogans serovar Canicola strain Gui44 plasmid pGui1, complete sequence) position: , mismatch: 5, identity: 0.884

-----ttgagcactaagagtaagtggaggctagatttagagggattgt	CRISPR spacer
tgtctttg-----taagagtaagtggaggctagatttagagggattgt	Protospacer
     ***     ***********************************

23. spacer 13.2|3163102|43|NC_017551|CRISPRCasFinder matches to NZ_CP044511 (Leptospira interrogans serovar Canicola strain LJ178 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.884

-----ttgagcactaagagtaagtggaggctagatttagagggattgt	CRISPR spacer
tgtctttg-----taagagtaagtggaggctagatttagagggattgt	Protospacer
     ***     ***********************************

24. spacer 13.2|3163102|43|NC_017551|CRISPRCasFinder matches to NZ_CP006725 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp1, complete sequence) position: , mismatch: 5, identity: 0.884

-----ttgagcactaagagtaagtggaggctagatttagagggattgt	CRISPR spacer
tgtctttg-----taagagtaagtggaggctagatttagagggattgt	Protospacer
     ***     ***********************************

25. spacer 7.6|3160633|43|NC_017551|CRISPRCasFinder matches to NZ_CP039286 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence) position: , mismatch: 6, identity: 0.86

-ttgagcacccgttctgattttttcttttccttccttttgttat	CRISPR spacer
ggtaaatg-ccgttctgattttttcttttccttccttttgttat	Protospacer
  *.*... ***********************************

26. spacer 8.5|3161110|43|NC_017551|CRISPRCasFinder matches to NZ_CP039286 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence) position: , mismatch: 6, identity: 0.86

-ttgagcacccgttctgattttttcttttccttccttttgttat	CRISPR spacer
ggtaaatg-ccgttctgattttttcttttccttccttttgttat	Protospacer
  *.*... ***********************************

27. spacer 10.3|3161855|43|NC_017551|CRISPRCasFinder matches to NZ_CP040842 (Leptospira weilii strain CUDO6 plasmid pDO6, complete sequence) position: , mismatch: 6, identity: 0.86

ttgagcacaaagacaaatcggttcatttgattttttcggatct	CRISPR spacer
ctaaaattaaagacaaatcggttcatttgattttttcggatct	Protospacer
.*.*.  .***********************************

28. spacer 10.3|3161855|43|NC_017551|CRISPRCasFinder matches to NZ_CP040845 (Leptospira weilii strain CUD13 plasmid pD13, complete sequence) position: , mismatch: 6, identity: 0.86

ttgagcacaaagacaaatcggttcatttgattttttcggatct	CRISPR spacer
ctaaaattaaagacaaatcggttcatttgattttttcggatct	Protospacer
.*.*.  .***********************************

29. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 7, identity: 0.781

gttctgattttttcttttccttccttttgtta	CRISPR spacer
tatttccttttttcttttctttccttttatta	Protospacer
  *.*  ************.********.***

30. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 7, identity: 0.781

gttctgattttttcttttccttccttttgtta	CRISPR spacer
tttttcctttttttttttccttccttttcttt	Protospacer
 **.*  ******.************** ** 

31. spacer 10.1|3161864|32|NC_017551|PILER-CR matches to NC_010478 (Synechococcus sp. PCC 7002 plasmid pAQ4, complete sequence) position: , mismatch: 7, identity: 0.781

aagacaaatcggttcatttgattttttcggat	CRISPR spacer
agaacaaatcggttgttttgattttttagttt	Protospacer
*..***********  *********** *  *

32. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP049031 (Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
ggattgagtttgtcttttccttccttttggcg	Protospacer
*  .*** *** ***************** ..

33. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to KT997873 (Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
acccagattttttcttttccttctttatgtat	Protospacer
...* ******************.** ***  

34. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttctgatttttcattttccttctcctttcaa	Protospacer
************. *********...** . *

35. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttctgatttttcattttccttctcctttcaa	Protospacer
************. *********...** . *

36. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttctgatttttcattttccttctcctttcaa	Protospacer
************. *********...** . *

37. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttctgatttttcattttccttctcctttcaa	Protospacer
************. *********...** . *

38. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to CP027480 (Pseudomonas koreensis strain P19E3 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

gttctgat-tttttcttttccttccttttgtta	CRISPR spacer
-tcatagtgtttttcttttccttcctattcttg	Protospacer
 *. *..* ***************** ** **.

39. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttctgatttttcattttccttctcctttcaa	Protospacer
************. *********...** . *

40. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttctgatttttcattttccttctcctttcaa	Protospacer
************. *********...** . *

41. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to AP014201 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C75-MedDCM-OCT-S25-C132, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttcgggttttttcttttccttctctctatct	Protospacer
**** *.****************..*.*.*. 

42. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to AP014202 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C75-MedDCM-OCT-S34-C124, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttcgggttttttcttttccttctgtctatct	Protospacer
**** *.****************. *.*.*. 

43. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
tcttccttttcttcttttccttcctttttttc	Protospacer
 .*..  ***.***************** ** 

44. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
cctgcaagtttttcttttcctccctttttttc	Protospacer
 .* ..* *************.****** ** 

45. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
acttgacttttttcgttttcttccttttgttc	Protospacer
..*. . ******* ***.************ 

46. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP023350 (Escherichia coli strain ETEC-2264 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
ttttcttcattttcttttccttctttttctta	Protospacer
 **..  . **************.**** ***

47. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
ttaaatactttttcttttcatttcttttgttt	Protospacer
 *    *.*********** **.******** 

48. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP024241 (Escherichia coli O114:H49 strain 90-9280 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
ttttcttcattttcttttccttctttttctta	Protospacer
 **..  . **************.**** ***

49. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to NZ_CP024238 (Escherichia coli O15:H11 strain 90-9272 plasmid unnamed) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
ttttcttcattttcttttccttctttttctta	Protospacer
 **..  . **************.**** ***

50. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to MN693454 (Marine virus AFVG_25M276, complete genome) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
agtaatattttttcttttctttgcttttgctt	Protospacer
. *   *************.** ******.* 

51. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to AP013581 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S23-C56, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
tggataattttttcttttctctccttttgatc	Protospacer
    *.*************..******** * 

52. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to MN693568 (Marine virus AFVG_25M275, complete genome) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
agtaatattttttcttttctttgcttttgctt	Protospacer
. *   *************.** ******.* 

53. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to MH319749 (Marine virus AG-345-F15 Ga0172271_11 genomic sequence) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
agtaagattttttctttttcttctttttatat	Protospacer
. *  *************.****.****.*  

54. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to AP013457 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C20) position: , mismatch: 9, identity: 0.719

gttctgattttttcttttccttccttttgtta	CRISPR spacer
gttttgattttttcttttacttcttcgtacat	Protospacer
***.************** ****.*. *..  

55. spacer 7.3|3160641|34|NC_017551|CRT matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 9, identity: 0.735

ccgttctgattttttcttttccttccttttgtta	CRISPR spacer
tttatttccttttttcttttctttccttttatta	Protospacer
..  *.*  ************.********.***

56. spacer 7.3|3160641|34|NC_017551|CRT matches to NZ_CP049031 (Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence) position: , mismatch: 9, identity: 0.735

ccgttctgattttttcttttccttccttttgtta	CRISPR spacer
cgggattgagtttgtcttttccttccttttggcg	Protospacer
* *  .*** *** ***************** ..

57. spacer 8.2|3161118|35|NC_017551|CRT,PILER-CR matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 9, identity: 0.743

ccgttctgattttttcttttccttccttttgttat	CRISPR spacer
tttatttccttttttcttttctttccttttattat	Protospacer
..  *.*  ************.********.****

58. spacer 7.1|3160643|32|NC_017551|PILER-CR matches to MN698241 (Pelagibacter phage HTVC027P, complete genome) position: , mismatch: 10, identity: 0.688

gttctgattttttcttttccttccttttgtta	CRISPR spacer
aacagatttttttctttttcttccttttcttt	Protospacer
. .  . ***********.********* ** 

59. spacer 7.3|3160641|34|NC_017551|CRT matches to KT997873 (Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome) position: , mismatch: 10, identity: 0.706

ccgttctgattttttcttttccttccttttgtta	CRISPR spacer
gtacccagattttttcttttccttctttatgtat	Protospacer
 ....* ******************.** ***  

60. spacer 8.2|3161118|35|NC_017551|CRT,PILER-CR matches to NZ_CP049031 (Fluviibacterium aquatile strain SC52 plasmid pSC52_3, complete sequence) position: , mismatch: 10, identity: 0.714

ccgttctgattttttcttttccttccttttgttat	CRISPR spacer
cgggattgagtttgtcttttccttccttttggcgc	Protospacer
* *  .*** *** ***************** ...

61. spacer 7.3|3160641|34|NC_017551|CRT matches to NZ_CP045289 (Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence) position: , mismatch: 11, identity: 0.676

ccgttctgattttttcttttccttccttttgtta	CRISPR spacer
tttcttccttttcttcttttccttcctttttttc	Protospacer
.. .*..  ***.***************** ** 

62. spacer 7.3|3160641|34|NC_017551|CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 11, identity: 0.676

ccgttctgattttttcttttccttccttttgtta	CRISPR spacer
ttacttgacttttttcgttttcttccttttgttc	Protospacer
....*. . ******* ***.************ 

63. spacer 8.2|3161118|35|NC_017551|CRT,PILER-CR matches to KT997873 (Uncultured Mediterranean phage uvDeep-CGR2-KM21-C368, complete genome) position: , mismatch: 11, identity: 0.686

ccgttctgattttttcttttccttccttttgttat	CRISPR spacer
gtacccagattttttcttttccttctttatgtata	Protospacer
 ....* ******************.** ***   

64. spacer 7.3|3160641|34|NC_017551|CRT matches to MN698241 (Pelagibacter phage HTVC027P, complete genome) position: , mismatch: 12, identity: 0.647

ccgttctgattttttcttttccttccttttgtta	CRISPR spacer
taaacagatttttttctttttcttccttttcttt	Protospacer
. . .  . ***********.********* ** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1652696 : 1662132 8 uncultured_marine_virus(37.5%) NA NA
DBSCAN-SWA_2 1738528 : 1793598 41 Leptospira_phage(75.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage