CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007032	Desulfitobacterium metallireducens DSM 15288 chromosome, complete genome	0 crisprs	DEDDh,RT,csa3,WYL,cas3,DinG	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

618057 : 670208

Bacillus_phage(40.0%)

integrase,protease,transposase,holin

attL 619607:619629|attR 674556:674578

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006717482.1\|618057_619272_-\|transposase	IS110 family transposase	A0A0U3ULR1	Bacillus_phage	7.4e-40	29.8
619607:619629	attL	NA	NA	NA	NA
WP_006715346.1\|619705_620314_+	lipase	NA	NA	NA	NA
WP_156922784.1\|620679_621048_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_006715344.1\|621293_621893_+	HD domain-containing protein	NA	NA	NA	NA
WP_006715219.1\|622525_623809_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_006715343.1\|624138_624714_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_006715342.1\|624750_625938_-	MFS transporter	NA	NA	NA	NA
WP_006715341.1\|625977_626325_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_006715340.1\|626555_627803_-	threonine ammonia-lyase IlvA	NA	NA	NA	NA
WP_006715339.1\|628072_628999_-	DUF2935 domain-containing protein	NA	NA	NA	NA
WP_006715338.1\|629183_629750_+	cache domain-containing protein	NA	NA	NA	NA
WP_006715337.1\|629904_631509_+	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA
WP_006715336.1\|631501_632224_+	response regulator	NA	NA	NA	NA
WP_006715335.1\|632336_633668_+	2-hydroxycarboxylate transporter family protein	A0A140XAH4	Dickeya_phage	4.3e-17	43.9
WP_006715334.1\|633700_634933_+	NAD-dependent malic enzyme 4	NA	NA	NA	NA
WP_006715333.1\|635066_636017_+	bile acid:sodium symporter	NA	NA	NA	NA
WP_006715332.1\|636261_636666_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_006715331.1\|636678_636939_-	hypothetical protein	NA	NA	NA	NA
WP_006715330.1\|636983_638237_-	DNA polymerase IV	A0A1P8CWP4	Bacillus_phage	9.1e-33	29.8
WP_006715329.1\|638445_638592_-	alpha/beta-type small acid-soluble spore protein	NA	NA	NA	NA
WP_006715328.1\|638698_638845_-	alpha/beta-type small acid-soluble spore protein	NA	NA	NA	NA
WP_006715327.1\|639061_640201_-	aldo/keto reductase	NA	NA	NA	NA
WP_006715326.1\|640464_641871_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_006715324.1\|642188_643751_+	acyl CoA:acetate/3-ketoacid CoA transferase	NA	NA	NA	NA
WP_006715323.1\|643766_645164_+	GntP family permease	NA	NA	NA	NA
WP_006715322.1\|645215_646355_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_006715321.1\|646465_647233_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_006715320.1\|647253_648165_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_006715319.1\|648179_649466_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_006715318.1\|649462_649744_+	ferredoxin family protein	NA	NA	NA	NA
WP_006715317.1\|649803_650223_+	MaoC family dehydratase	NA	NA	NA	NA
WP_006715316.1\|650286_651051_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_006715315.1\|651051_651255_-	hypothetical protein	NA	NA	NA	NA
WP_167998825.1\|651519_651693_-	hypothetical protein	NA	NA	NA	NA
WP_006715314.1\|651857_652277_-	MaoC family dehydratase	NA	NA	NA	NA
WP_156922752.1\|652323_652629_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_006715312.1\|652604_653891_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_006715311.1\|653902_654811_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_006715310.1\|654824_655598_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
WP_006715309.1\|655714_656854_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_006715308.1\|656911_658309_-	GntP family permease	NA	NA	NA	NA
WP_174377973.1\|658329_659898_-	malonate decarboxylase subunit alpha	NA	NA	NA	NA
WP_006715306.1\|660050_660269_+	hypothetical protein	NA	NA	NA	NA
WP_006715305.1\|660489_661632_+	acyltransferase	NA	NA	NA	NA
WP_006715304.1\|661838_662234_+	DUF2089 domain-containing protein	NA	NA	NA	NA
WP_006715303.1\|662251_662674_+	hypothetical protein	NA	NA	NA	NA
WP_006715302.1\|662663_662990_+	hypothetical protein	NA	NA	NA	NA
WP_006715301.1\|663002_663344_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_006715300.1\|663749_664757_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006715299.1\|664888_665095_-	TOBE domain-containing protein	NA	NA	NA	NA
WP_006715298.1\|665302_666052_-	exonuclease domain-containing protein	A0A2H4N840	Lake_Baikal_phage	1.6e-05	27.9
WP_006715297.1\|666787_667624_+\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	2.4e-42	36.9
WP_006715296.1\|667620_668796_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_041483955.1\|669278_670208_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
674556:674578	attR	NA	NA	NA	NA

DBSCAN-SWA_2

893510 : 901275

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006715091.1\|893510_894002_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.6e-25	44.7
WP_006715090.1\|894064_895360_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	6.1e-24	31.0
WP_006715089.1\|895892_896612_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
WP_006715088.1\|896645_898052_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.8e-61	36.9
WP_006715087.1\|898083_899100_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D8KMR0	Synechococcus_phage	1.1e-73	47.0
WP_006715086.1\|899096_899669_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.2e-29	40.3
WP_006715085.1\|899721_901275_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.6e-77	51.1

DBSCAN-SWA_3

1077787 : 1086258

Bodo_saltans_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006717929.1\|1077787_1078621_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	3.5e-25	32.6
WP_006717928.1\|1078638_1079418_+	NRDE family protein	A0A0M3ZEJ9	Turkeypox_virus	6.4e-37	36.1
WP_006717926.1\|1079418_1080393_+	D-2-hydroxyacid dehydrogenase	M1HBE3	Paramecium_bursaria_Chlorella_virus	2.7e-32	31.3
WP_006717925.1\|1080455_1080656_-	hypothetical protein	NA	NA	NA	NA
WP_006717923.1\|1080842_1083482_+	DNA polymerase I	A0A0C5K9B9	Enterococcus_phage	2.1e-39	31.0
WP_006717921.1\|1083527_1084349_+	DNA-formamidopyrimidine glycosylase	G3MA33	Bacillus_virus	7.3e-23	32.2
WP_006717920.1\|1084386_1086258_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.5e-55	31.2

DBSCAN-SWA_4

1717390 : 1724795

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006717263.1\|1717390_1718077_+	C40 family peptidase	S5MM68	Bacillus_phage	6.5e-17	41.2
WP_006717265.1\|1718086_1718956_-	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	5.6e-58	44.4
WP_006717268.1\|1719159_1719813_+	hemolysin III family protein	NA	NA	NA	NA
WP_006717271.1\|1719878_1720652_+	N-acetylmuramoyl-L-alanine amidase	A0A067ZJB6	Vibrio_phage	3.8e-21	35.4
WP_006717273.1\|1720711_1722307_-	peptide chain release factor 3	A0A2K9L2P9	Tupanvirus	5.0e-12	35.7
WP_006717275.1\|1722483_1722942_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_006717276.1\|1723072_1723279_+	alpha/beta-type small acid-soluble spore protein	A0A1P8CX76	Bacillus_phage	1.1e-09	56.1
WP_025248628.1\|1723385_1724795_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	6.4e-35	29.8

DBSCAN-SWA_5

1763805 : 1789445

Bacillus_phage(37.5%)

transposase,integrase,terminase,capsid

attL 1782114:1782129|attR 1792565:1792580

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006718579.1\|1763805_1764879_-\|integrase	site-specific integrase	A0A2R2ZGM9	Clostridioides_phage	1.9e-26	27.7
WP_006718578.1\|1764865_1765114_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006718575.1\|1765209_1765431_-	hypothetical protein	NA	NA	NA	NA
WP_006718573.1\|1765446_1765875_-	hypothetical protein	NA	NA	NA	NA
WP_006718571.1\|1765973_1766711_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_006718568.1\|1766793_1767390_-	hypothetical protein	NA	NA	NA	NA
WP_006718564.1\|1767682_1767901_+	hypothetical protein	NA	NA	NA	NA
WP_006718562.1\|1767921_1770534_-	hypothetical protein	NA	NA	NA	NA
WP_006716270.1\|1770817_1772359_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.9e-80	35.0
WP_006716269.1\|1772358_1773102_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.2e-19	24.7
WP_006719094.1\|1773163_1774357_-	hypothetical protein	NA	NA	NA	NA
WP_006719096.1\|1774369_1775710_-	hypothetical protein	NA	NA	NA	NA
WP_006719098.1\|1775816_1776233_-	hypothetical protein	NA	NA	NA	NA
WP_006719100.1\|1776244_1776805_-	hypothetical protein	NA	NA	NA	NA
WP_025248734.1\|1776820_1777021_-	hypothetical protein	NA	NA	NA	NA
WP_006719103.1\|1777120_1777741_-	hypothetical protein	NA	NA	NA	NA
WP_006719105.1\|1777743_1779567_-	hypothetical protein	A0A0S2SXH8	Bacillus_phage	4.9e-80	32.9
WP_006719108.1\|1779571_1780159_-	hypothetical protein	NA	NA	NA	NA
WP_006719111.1\|1780187_1780502_-	hypothetical protein	NA	NA	NA	NA
WP_006719113.1\|1780566_1781730_-\|capsid	phage major capsid protein	A0A0F7L1U5	uncultured_marine_virus	3.6e-52	33.8
WP_006719115.1\|1781760_1782567_-	hypothetical protein	NA	NA	NA	NA
1782114:1782129	attL	NA	NA	NA	NA
WP_006719118.1\|1782648_1782963_-	hypothetical protein	NA	NA	NA	NA
WP_006719120.1\|1782959_1783172_-	hypothetical protein	NA	NA	NA	NA
WP_006719121.1\|1783195_1783528_-	hypothetical protein	NA	NA	NA	NA
WP_006715219.1\|1783660_1784944_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_025248735.1\|1785234_1786926_-	hypothetical protein	A0A0U4IEM9	Arthrobacter_phage	4.8e-53	30.9
WP_156922765.1\|1786955_1787165_-	hypothetical protein	NA	NA	NA	NA
WP_006718841.1\|1787330_1788809_-\|terminase	PBSX family phage terminase large subunit	A0A0S2SXL6	Bacillus_phage	1.1e-149	55.5
WP_006718840.1\|1788866_1789445_-\|integrase	site-specific integrase	A0A1B1P7Y2	Bacillus_phage	2.4e-33	43.3
1792565:1792580	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3140865 : 3151317

Escherichia_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006716736.1\|3140865_3142845_-	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	5.4e-32	24.4
WP_006716735.1\|3142879_3144316_-	thioether cross-link-forming SCIFF peptide maturase	A0A1B2IB49	Erwinia_phage	5.5e-10	29.8
WP_006716734.1\|3144508_3144649_-	six-cysteine ranthipeptide SCIFF	NA	NA	NA	NA
WP_006716733.1\|3145195_3146479_-	adenylosuccinate synthase	G5CQQ4	Megavirus	9.8e-67	34.2
WP_006716732.1\|3146526_3147828_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	6.8e-23	30.7
WP_006716731.1\|3148076_3149405_-	replicative DNA helicase	O80281	Escherichia_phage	3.7e-109	50.2
WP_006716730.1\|3149418_3151317_-\|protease	ATP-dependent protease, Lon family	A0A0R6PGP8	Moraxella_phage	2.3e-27	25.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage